Multiple sequence alignment - TraesCS3D01G058200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G058200 chr3D 100.000 4209 0 0 1 4209 24874479 24870271 0.000000e+00 7773.0
1 TraesCS3D01G058200 chr3D 95.938 320 11 1 3613 3930 400997161 400997480 6.240000e-143 518.0
2 TraesCS3D01G058200 chr3D 92.260 323 20 5 3612 3930 299391391 299391712 1.780000e-123 453.0
3 TraesCS3D01G058200 chr3D 93.805 226 13 1 3928 4152 400997669 400997894 5.210000e-89 339.0
4 TraesCS3D01G058200 chr3D 69.974 1139 288 38 1073 2185 24103702 24102592 4.360000e-35 159.0
5 TraesCS3D01G058200 chr3B 94.151 2855 98 27 818 3612 42475898 42473053 0.000000e+00 4283.0
6 TraesCS3D01G058200 chr3B 87.611 226 14 2 3928 4152 729170010 729169798 2.510000e-62 250.0
7 TraesCS3D01G058200 chr3B 81.928 166 30 0 1077 1242 480427160 480426995 1.580000e-29 141.0
8 TraesCS3D01G058200 chr3A 96.382 2239 75 3 987 3222 33886511 33884276 0.000000e+00 3681.0
9 TraesCS3D01G058200 chr3A 96.231 398 15 0 3215 3612 33850946 33850549 0.000000e+00 652.0
10 TraesCS3D01G058200 chr3A 91.791 268 21 1 1 268 657334242 657333976 5.140000e-99 372.0
11 TraesCS3D01G058200 chr3A 91.765 170 7 2 817 986 33886737 33886575 3.270000e-56 230.0
12 TraesCS3D01G058200 chr2B 95.327 321 13 1 3612 3930 765218950 765218630 3.750000e-140 508.0
13 TraesCS3D01G058200 chr2B 83.523 176 29 0 1064 1239 42177663 42177838 9.360000e-37 165.0
14 TraesCS3D01G058200 chr5A 95.062 324 13 2 3610 3930 631741513 631741836 1.350000e-139 507.0
15 TraesCS3D01G058200 chr5A 90.000 70 5 2 2435 2502 30657398 30657329 5.800000e-14 89.8
16 TraesCS3D01G058200 chr2A 95.016 321 11 3 3613 3930 740045251 740045569 2.260000e-137 499.0
17 TraesCS3D01G058200 chr2A 94.081 321 16 2 3612 3930 58996729 58996410 6.330000e-133 484.0
18 TraesCS3D01G058200 chr2A 91.304 69 1 4 2434 2501 121181450 121181386 5.800000e-14 89.8
19 TraesCS3D01G058200 chr2A 88.732 71 6 2 2434 2502 763366827 763366757 7.500000e-13 86.1
20 TraesCS3D01G058200 chr2A 95.000 40 2 0 4002 4041 234281541 234281502 3.510000e-06 63.9
21 TraesCS3D01G058200 chr4B 94.704 321 14 2 3613 3930 650952717 650953037 2.920000e-136 496.0
22 TraesCS3D01G058200 chr6D 93.168 322 19 2 3612 3930 436885268 436885589 1.770000e-128 470.0
23 TraesCS3D01G058200 chr6D 91.078 269 24 0 1 269 121824965 121825233 8.600000e-97 364.0
24 TraesCS3D01G058200 chr7A 92.835 321 20 2 3613 3930 664109660 664109980 2.960000e-126 462.0
25 TraesCS3D01G058200 chr1D 92.222 270 21 0 1 270 400032151 400031882 2.370000e-102 383.0
26 TraesCS3D01G058200 chr1D 91.144 271 22 2 1 271 375764729 375764997 2.390000e-97 366.0
27 TraesCS3D01G058200 chr1D 82.609 92 16 0 1653 1744 453822410 453822501 9.700000e-12 82.4
28 TraesCS3D01G058200 chr7D 91.544 272 23 0 1 272 254987977 254987706 3.970000e-100 375.0
29 TraesCS3D01G058200 chr7D 91.078 269 24 0 1 269 139305610 139305878 8.600000e-97 364.0
30 TraesCS3D01G058200 chr7D 91.078 269 24 0 1 269 426819367 426819635 8.600000e-97 364.0
31 TraesCS3D01G058200 chr7D 94.444 72 2 2 2433 2502 53277371 53277300 4.450000e-20 110.0
32 TraesCS3D01G058200 chr7D 97.059 34 1 0 4002 4035 582818059 582818092 1.630000e-04 58.4
33 TraesCS3D01G058200 chr2D 91.513 271 23 0 1 271 114635070 114635340 1.430000e-99 374.0
34 TraesCS3D01G058200 chr4D 90.775 271 25 0 1 271 449403803 449403533 3.090000e-96 363.0
35 TraesCS3D01G058200 chr6A 86.066 122 13 4 3928 4049 575287198 575287081 1.230000e-25 128.0
36 TraesCS3D01G058200 chr6A 92.308 65 4 1 2433 2496 119749505 119749569 1.610000e-14 91.6
37 TraesCS3D01G058200 chr1B 98.246 57 0 1 2441 2496 633139973 633139917 9.630000e-17 99.0
38 TraesCS3D01G058200 chr1B 82.796 93 14 2 1653 1744 624087786 624087877 9.700000e-12 82.4
39 TraesCS3D01G058200 chr5B 93.846 65 3 1 2433 2496 527760622 527760558 3.460000e-16 97.1
40 TraesCS3D01G058200 chr1A 84.337 83 11 2 1653 1734 548531624 548531705 3.490000e-11 80.5
41 TraesCS3D01G058200 chr5D 87.719 57 4 3 4002 4058 137988704 137988651 3.510000e-06 63.9
42 TraesCS3D01G058200 chr5D 97.059 34 1 0 4002 4035 39069294 39069327 1.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G058200 chr3D 24870271 24874479 4208 True 7773.0 7773 100.0000 1 4209 1 chr3D.!!$R2 4208
1 TraesCS3D01G058200 chr3D 400997161 400997894 733 False 428.5 518 94.8715 3613 4152 2 chr3D.!!$F2 539
2 TraesCS3D01G058200 chr3B 42473053 42475898 2845 True 4283.0 4283 94.1510 818 3612 1 chr3B.!!$R1 2794
3 TraesCS3D01G058200 chr3A 33884276 33886737 2461 True 1955.5 3681 94.0735 817 3222 2 chr3A.!!$R3 2405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.034896 GGACACGCTTCAAGGAGGAA 59.965 55.0 0.00 0.0 0.00 3.36 F
345 346 0.240945 GAAGCCACCAAACATCCACG 59.759 55.0 0.00 0.0 0.00 4.94 F
534 535 0.322187 ACCACCGGAACATACAAGGC 60.322 55.0 9.46 0.0 0.00 4.35 F
1353 1422 0.608582 ACCACTTCGTCTACTCCGCT 60.609 55.0 0.00 0.0 0.00 5.52 F
3064 3170 0.183731 GCCCCAATAACTCTGGAGGG 59.816 60.0 2.58 0.0 35.85 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 1478 0.107945 GCTCATGAAGGCTTCGACCT 60.108 55.000 21.42 4.39 43.91 3.85 R
1451 1520 0.179119 GGCATAGTGCTCGTTACCGT 60.179 55.000 1.64 0.00 44.28 4.83 R
1470 1539 1.026718 GGTGATGAAGGAAGGCCACG 61.027 60.000 5.01 0.00 36.29 4.94 R
3087 3193 0.321122 CCGTGCCTGCTTCTTCTTCT 60.321 55.000 0.00 0.00 0.00 2.85 R
3980 4282 1.152525 GATCCCTCCTAGACCCGCA 60.153 63.158 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.431725 GGGGCGTTGGAAGCGAAG 61.432 66.667 0.00 0.00 35.00 3.79
32 33 3.431725 GGGCGTTGGAAGCGAAGG 61.432 66.667 0.00 0.00 35.00 3.46
33 34 3.431725 GGCGTTGGAAGCGAAGGG 61.432 66.667 0.00 0.00 35.00 3.95
34 35 2.358247 GCGTTGGAAGCGAAGGGA 60.358 61.111 0.00 0.00 0.00 4.20
35 36 2.677979 GCGTTGGAAGCGAAGGGAC 61.678 63.158 0.00 0.00 0.00 4.46
37 38 1.291877 CGTTGGAAGCGAAGGGACTG 61.292 60.000 0.00 0.00 40.86 3.51
38 39 1.302511 TTGGAAGCGAAGGGACTGC 60.303 57.895 0.00 0.00 40.86 4.40
39 40 1.768684 TTGGAAGCGAAGGGACTGCT 61.769 55.000 0.00 0.00 40.86 4.24
40 41 0.902984 TGGAAGCGAAGGGACTGCTA 60.903 55.000 0.00 0.00 40.86 3.49
41 42 0.179097 GGAAGCGAAGGGACTGCTAG 60.179 60.000 0.00 0.00 40.86 3.42
42 43 0.533032 GAAGCGAAGGGACTGCTAGT 59.467 55.000 0.00 0.00 40.86 2.57
43 44 0.247736 AAGCGAAGGGACTGCTAGTG 59.752 55.000 0.00 0.00 40.86 2.74
44 45 0.900647 AGCGAAGGGACTGCTAGTGT 60.901 55.000 0.00 0.00 40.86 3.55
45 46 0.458716 GCGAAGGGACTGCTAGTGTC 60.459 60.000 8.79 8.79 40.86 3.67
49 50 4.130255 GGACTGCTAGTGTCCCCA 57.870 61.111 19.74 0.00 46.01 4.96
50 51 2.372852 GGACTGCTAGTGTCCCCAA 58.627 57.895 19.74 0.00 46.01 4.12
51 52 0.036294 GGACTGCTAGTGTCCCCAAC 60.036 60.000 19.74 2.31 46.01 3.77
52 53 0.685097 GACTGCTAGTGTCCCCAACA 59.315 55.000 6.72 0.00 34.78 3.33
53 54 0.687354 ACTGCTAGTGTCCCCAACAG 59.313 55.000 0.00 0.00 38.97 3.16
54 55 0.036010 CTGCTAGTGTCCCCAACAGG 60.036 60.000 0.00 0.00 38.97 4.00
55 56 1.377333 GCTAGTGTCCCCAACAGGC 60.377 63.158 0.00 0.00 38.97 4.85
56 57 1.079127 CTAGTGTCCCCAACAGGCG 60.079 63.158 0.00 0.00 38.97 5.52
57 58 2.521958 CTAGTGTCCCCAACAGGCGG 62.522 65.000 0.00 0.00 38.97 6.13
72 73 4.308458 CGGGCCACGTGAGGACAA 62.308 66.667 19.30 0.00 38.98 3.18
73 74 2.358737 GGGCCACGTGAGGACAAG 60.359 66.667 19.30 0.00 38.98 3.16
74 75 2.426023 GGCCACGTGAGGACAAGT 59.574 61.111 19.30 0.00 39.09 3.16
78 79 3.362581 CACGTGAGGACAAGTGTGT 57.637 52.632 10.90 0.00 46.02 3.72
79 80 0.930310 CACGTGAGGACAAGTGTGTG 59.070 55.000 10.90 0.00 46.02 3.82
80 81 0.810031 ACGTGAGGACAAGTGTGTGC 60.810 55.000 0.00 0.00 45.91 4.57
84 85 4.012895 GGACAAGTGTGTGCGGCG 62.013 66.667 0.51 0.51 38.41 6.46
85 86 2.964925 GACAAGTGTGTGCGGCGA 60.965 61.111 12.98 0.00 38.41 5.54
86 87 2.943345 GACAAGTGTGTGCGGCGAG 61.943 63.158 12.98 0.00 38.41 5.03
107 108 2.809601 GTCTGCGCGATGTCCGTT 60.810 61.111 12.10 0.00 41.15 4.44
108 109 2.048597 TCTGCGCGATGTCCGTTT 60.049 55.556 12.10 0.00 41.15 3.60
109 110 2.092291 TCTGCGCGATGTCCGTTTC 61.092 57.895 12.10 0.00 41.15 2.78
110 111 2.356433 TGCGCGATGTCCGTTTCA 60.356 55.556 12.10 0.00 41.15 2.69
111 112 2.095843 GCGCGATGTCCGTTTCAC 59.904 61.111 12.10 0.00 41.15 3.18
112 113 2.776072 CGCGATGTCCGTTTCACC 59.224 61.111 0.00 0.00 41.15 4.02
113 114 2.736682 CGCGATGTCCGTTTCACCC 61.737 63.158 0.00 0.00 41.15 4.61
114 115 2.396157 GCGATGTCCGTTTCACCCC 61.396 63.158 0.00 0.00 41.15 4.95
115 116 1.004320 CGATGTCCGTTTCACCCCA 60.004 57.895 0.00 0.00 0.00 4.96
116 117 0.604243 CGATGTCCGTTTCACCCCAA 60.604 55.000 0.00 0.00 0.00 4.12
117 118 1.611519 GATGTCCGTTTCACCCCAAA 58.388 50.000 0.00 0.00 0.00 3.28
118 119 1.268625 GATGTCCGTTTCACCCCAAAC 59.731 52.381 0.00 0.00 33.57 2.93
119 120 0.256464 TGTCCGTTTCACCCCAAACT 59.744 50.000 0.00 0.00 34.59 2.66
120 121 0.949397 GTCCGTTTCACCCCAAACTC 59.051 55.000 0.00 0.00 34.59 3.01
121 122 0.533308 TCCGTTTCACCCCAAACTCG 60.533 55.000 0.00 0.00 34.59 4.18
122 123 1.512156 CCGTTTCACCCCAAACTCGG 61.512 60.000 0.00 0.00 34.59 4.63
123 124 1.658114 GTTTCACCCCAAACTCGGC 59.342 57.895 0.00 0.00 34.03 5.54
124 125 1.894756 TTTCACCCCAAACTCGGCG 60.895 57.895 0.00 0.00 0.00 6.46
127 128 4.572571 ACCCCAAACTCGGCGCAA 62.573 61.111 10.83 0.00 0.00 4.85
128 129 3.737172 CCCCAAACTCGGCGCAAG 61.737 66.667 10.83 8.81 43.44 4.01
129 130 2.978010 CCCAAACTCGGCGCAAGT 60.978 61.111 10.83 9.58 41.68 3.16
130 131 2.551912 CCCAAACTCGGCGCAAGTT 61.552 57.895 18.46 18.46 38.59 2.66
131 132 1.358759 CCAAACTCGGCGCAAGTTT 59.641 52.632 25.63 25.63 45.41 2.66
133 134 1.358759 AAACTCGGCGCAAGTTTGG 59.641 52.632 28.61 8.31 43.46 3.28
134 135 2.070654 AAACTCGGCGCAAGTTTGGG 62.071 55.000 28.61 8.02 43.46 4.12
140 141 3.683937 CGCAAGTTTGGGCCAGGG 61.684 66.667 6.23 0.00 34.31 4.45
141 142 2.203625 GCAAGTTTGGGCCAGGGA 60.204 61.111 6.23 0.00 0.00 4.20
142 143 1.610379 GCAAGTTTGGGCCAGGGAT 60.610 57.895 6.23 0.00 0.00 3.85
143 144 1.891722 GCAAGTTTGGGCCAGGGATG 61.892 60.000 6.23 6.71 0.00 3.51
144 145 1.079073 AAGTTTGGGCCAGGGATGG 59.921 57.895 6.23 0.00 0.00 3.51
145 146 2.364186 GTTTGGGCCAGGGATGGG 60.364 66.667 6.23 0.00 0.00 4.00
146 147 2.868566 TTTGGGCCAGGGATGGGT 60.869 61.111 6.23 0.00 0.00 4.51
147 148 2.929964 TTTGGGCCAGGGATGGGTC 61.930 63.158 6.23 0.00 0.00 4.46
150 151 3.407967 GGCCAGGGATGGGTCGAA 61.408 66.667 0.00 0.00 0.00 3.71
151 152 2.674754 GCCAGGGATGGGTCGAAA 59.325 61.111 0.00 0.00 0.00 3.46
152 153 1.001393 GCCAGGGATGGGTCGAAAA 60.001 57.895 0.00 0.00 0.00 2.29
153 154 1.313091 GCCAGGGATGGGTCGAAAAC 61.313 60.000 0.00 0.00 0.00 2.43
154 155 1.024579 CCAGGGATGGGTCGAAAACG 61.025 60.000 0.00 0.00 0.00 3.60
155 156 1.024579 CAGGGATGGGTCGAAAACGG 61.025 60.000 0.00 0.00 0.00 4.44
156 157 1.196104 AGGGATGGGTCGAAAACGGA 61.196 55.000 0.00 0.00 0.00 4.69
157 158 1.022982 GGGATGGGTCGAAAACGGAC 61.023 60.000 0.00 0.00 0.00 4.79
158 159 1.356527 GGATGGGTCGAAAACGGACG 61.357 60.000 0.00 0.00 35.24 4.79
159 160 1.356527 GATGGGTCGAAAACGGACGG 61.357 60.000 0.00 0.00 35.24 4.79
160 161 1.818959 ATGGGTCGAAAACGGACGGA 61.819 55.000 0.00 0.00 35.24 4.69
161 162 1.300853 GGGTCGAAAACGGACGGAA 60.301 57.895 0.00 0.00 35.24 4.30
162 163 0.671472 GGGTCGAAAACGGACGGAAT 60.671 55.000 0.00 0.00 35.24 3.01
163 164 0.717784 GGTCGAAAACGGACGGAATC 59.282 55.000 0.00 0.00 35.24 2.52
164 165 0.717784 GTCGAAAACGGACGGAATCC 59.282 55.000 0.00 0.00 45.20 3.01
186 187 1.471287 GACATTTGTCCGTTTAGGGCC 59.529 52.381 0.00 0.00 46.38 5.80
187 188 0.450184 CATTTGTCCGTTTAGGGCCG 59.550 55.000 0.00 0.00 46.38 6.13
188 189 1.310216 ATTTGTCCGTTTAGGGCCGC 61.310 55.000 0.00 0.00 46.38 6.53
189 190 4.745751 TGTCCGTTTAGGGCCGCG 62.746 66.667 0.00 0.00 46.38 6.46
194 195 4.454717 GTTTAGGGCCGCGCGTTG 62.455 66.667 29.95 15.79 0.00 4.10
206 207 3.806422 GCGTTGGGCCGCGTTATT 61.806 61.111 18.89 0.00 44.69 1.40
207 208 2.401990 CGTTGGGCCGCGTTATTC 59.598 61.111 4.92 0.00 0.00 1.75
208 209 2.401990 GTTGGGCCGCGTTATTCG 59.598 61.111 4.92 0.00 43.12 3.34
209 210 2.047083 TTGGGCCGCGTTATTCGT 60.047 55.556 4.92 0.00 42.13 3.85
210 211 2.101835 TTGGGCCGCGTTATTCGTC 61.102 57.895 4.92 0.00 42.13 4.20
211 212 3.267118 GGGCCGCGTTATTCGTCC 61.267 66.667 4.92 0.00 42.13 4.79
212 213 3.623330 GGCCGCGTTATTCGTCCG 61.623 66.667 4.92 0.00 42.13 4.79
213 214 2.882301 GCCGCGTTATTCGTCCGT 60.882 61.111 4.92 0.00 42.13 4.69
214 215 2.447070 GCCGCGTTATTCGTCCGTT 61.447 57.895 4.92 0.00 42.13 4.44
215 216 1.627424 CCGCGTTATTCGTCCGTTC 59.373 57.895 4.92 0.00 42.13 3.95
216 217 0.799534 CCGCGTTATTCGTCCGTTCT 60.800 55.000 4.92 0.00 42.13 3.01
217 218 1.531677 CCGCGTTATTCGTCCGTTCTA 60.532 52.381 4.92 0.00 42.13 2.10
218 219 1.510338 CGCGTTATTCGTCCGTTCTAC 59.490 52.381 0.00 0.00 42.13 2.59
219 220 2.518949 GCGTTATTCGTCCGTTCTACA 58.481 47.619 0.00 0.00 42.13 2.74
220 221 2.277316 GCGTTATTCGTCCGTTCTACAC 59.723 50.000 0.00 0.00 42.13 2.90
221 222 2.848302 CGTTATTCGTCCGTTCTACACC 59.152 50.000 0.00 0.00 34.52 4.16
222 223 3.670359 CGTTATTCGTCCGTTCTACACCA 60.670 47.826 0.00 0.00 34.52 4.17
223 224 4.236935 GTTATTCGTCCGTTCTACACCAA 58.763 43.478 0.00 0.00 0.00 3.67
224 225 2.886862 TTCGTCCGTTCTACACCAAA 57.113 45.000 0.00 0.00 0.00 3.28
225 226 2.138596 TCGTCCGTTCTACACCAAAC 57.861 50.000 0.00 0.00 0.00 2.93
226 227 1.408340 TCGTCCGTTCTACACCAAACA 59.592 47.619 0.00 0.00 0.00 2.83
227 228 1.790623 CGTCCGTTCTACACCAAACAG 59.209 52.381 0.00 0.00 0.00 3.16
228 229 2.544277 CGTCCGTTCTACACCAAACAGA 60.544 50.000 0.00 0.00 0.00 3.41
229 230 2.798847 GTCCGTTCTACACCAAACAGAC 59.201 50.000 0.00 0.00 0.00 3.51
230 231 1.790623 CCGTTCTACACCAAACAGACG 59.209 52.381 0.00 0.00 0.00 4.18
231 232 1.191647 CGTTCTACACCAAACAGACGC 59.808 52.381 0.00 0.00 0.00 5.19
232 233 2.206750 GTTCTACACCAAACAGACGCA 58.793 47.619 0.00 0.00 0.00 5.24
233 234 2.806244 GTTCTACACCAAACAGACGCAT 59.194 45.455 0.00 0.00 0.00 4.73
234 235 3.120321 TCTACACCAAACAGACGCATT 57.880 42.857 0.00 0.00 0.00 3.56
235 236 3.064207 TCTACACCAAACAGACGCATTC 58.936 45.455 0.00 0.00 0.00 2.67
236 237 1.674359 ACACCAAACAGACGCATTCA 58.326 45.000 0.00 0.00 0.00 2.57
237 238 1.603802 ACACCAAACAGACGCATTCAG 59.396 47.619 0.00 0.00 0.00 3.02
238 239 1.872952 CACCAAACAGACGCATTCAGA 59.127 47.619 0.00 0.00 0.00 3.27
239 240 2.485426 CACCAAACAGACGCATTCAGAT 59.515 45.455 0.00 0.00 0.00 2.90
240 241 3.684305 CACCAAACAGACGCATTCAGATA 59.316 43.478 0.00 0.00 0.00 1.98
241 242 4.154015 CACCAAACAGACGCATTCAGATAA 59.846 41.667 0.00 0.00 0.00 1.75
242 243 4.393062 ACCAAACAGACGCATTCAGATAAG 59.607 41.667 0.00 0.00 0.00 1.73
243 244 4.631377 CCAAACAGACGCATTCAGATAAGA 59.369 41.667 0.00 0.00 0.00 2.10
244 245 5.295292 CCAAACAGACGCATTCAGATAAGAT 59.705 40.000 0.00 0.00 0.00 2.40
245 246 5.980698 AACAGACGCATTCAGATAAGATG 57.019 39.130 0.00 0.00 0.00 2.90
246 247 4.375272 ACAGACGCATTCAGATAAGATGG 58.625 43.478 0.00 0.00 0.00 3.51
247 248 4.100035 ACAGACGCATTCAGATAAGATGGA 59.900 41.667 0.00 0.00 0.00 3.41
248 249 4.685165 CAGACGCATTCAGATAAGATGGAG 59.315 45.833 0.00 0.00 0.00 3.86
249 250 4.343526 AGACGCATTCAGATAAGATGGAGT 59.656 41.667 0.00 0.00 0.00 3.85
250 251 4.626042 ACGCATTCAGATAAGATGGAGTC 58.374 43.478 0.00 0.00 0.00 3.36
251 252 3.672397 CGCATTCAGATAAGATGGAGTCG 59.328 47.826 0.00 0.00 0.00 4.18
252 253 3.431572 GCATTCAGATAAGATGGAGTCGC 59.568 47.826 0.00 0.00 0.00 5.19
253 254 3.355626 TTCAGATAAGATGGAGTCGCG 57.644 47.619 0.00 0.00 0.00 5.87
254 255 1.001268 TCAGATAAGATGGAGTCGCGC 60.001 52.381 0.00 0.00 0.00 6.86
255 256 0.315568 AGATAAGATGGAGTCGCGCC 59.684 55.000 0.00 0.00 0.00 6.53
256 257 1.004277 GATAAGATGGAGTCGCGCCG 61.004 60.000 0.00 0.00 0.00 6.46
257 258 1.735376 ATAAGATGGAGTCGCGCCGT 61.735 55.000 0.00 0.00 0.00 5.68
258 259 2.607668 TAAGATGGAGTCGCGCCGTG 62.608 60.000 0.00 0.00 0.00 4.94
263 264 4.719369 GAGTCGCGCCGTGGAGTT 62.719 66.667 0.00 0.00 0.00 3.01
270 271 2.349755 GCCGTGGAGTTGGCCTAA 59.650 61.111 3.32 0.00 45.73 2.69
271 272 2.038837 GCCGTGGAGTTGGCCTAAC 61.039 63.158 3.32 7.14 45.73 2.34
272 273 1.740296 CCGTGGAGTTGGCCTAACG 60.740 63.158 3.32 2.91 44.15 3.18
273 274 1.740296 CGTGGAGTTGGCCTAACGG 60.740 63.158 3.32 0.00 44.15 4.44
274 275 1.376812 GTGGAGTTGGCCTAACGGG 60.377 63.158 3.32 0.00 44.15 5.28
283 284 4.832608 CCTAACGGGCTGGACGGC 62.833 72.222 0.00 0.00 35.23 5.68
324 325 4.771127 GTGGACACGCTTCAAGGA 57.229 55.556 0.00 0.00 0.00 3.36
325 326 2.533318 GTGGACACGCTTCAAGGAG 58.467 57.895 0.00 0.00 0.00 3.69
326 327 0.951040 GTGGACACGCTTCAAGGAGG 60.951 60.000 0.00 0.00 0.00 4.30
327 328 1.118965 TGGACACGCTTCAAGGAGGA 61.119 55.000 0.00 0.00 0.00 3.71
328 329 0.034896 GGACACGCTTCAAGGAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
329 330 1.433534 GACACGCTTCAAGGAGGAAG 58.566 55.000 0.00 0.00 45.58 3.46
334 335 3.256281 CTTCAAGGAGGAAGCCACC 57.744 57.895 0.00 0.00 38.01 4.61
335 336 0.401738 CTTCAAGGAGGAAGCCACCA 59.598 55.000 2.82 0.00 38.01 4.17
336 337 0.850100 TTCAAGGAGGAAGCCACCAA 59.150 50.000 2.82 0.00 36.71 3.67
337 338 0.850100 TCAAGGAGGAAGCCACCAAA 59.150 50.000 2.82 0.00 36.71 3.28
338 339 0.961753 CAAGGAGGAAGCCACCAAAC 59.038 55.000 2.82 0.00 36.71 2.93
339 340 0.555769 AAGGAGGAAGCCACCAAACA 59.444 50.000 2.82 0.00 36.71 2.83
340 341 0.779997 AGGAGGAAGCCACCAAACAT 59.220 50.000 2.82 0.00 36.71 2.71
341 342 1.177401 GGAGGAAGCCACCAAACATC 58.823 55.000 0.00 0.00 34.35 3.06
342 343 1.177401 GAGGAAGCCACCAAACATCC 58.823 55.000 0.00 0.00 0.00 3.51
343 344 0.482446 AGGAAGCCACCAAACATCCA 59.518 50.000 0.00 0.00 0.00 3.41
344 345 0.603065 GGAAGCCACCAAACATCCAC 59.397 55.000 0.00 0.00 0.00 4.02
345 346 0.240945 GAAGCCACCAAACATCCACG 59.759 55.000 0.00 0.00 0.00 4.94
346 347 1.178534 AAGCCACCAAACATCCACGG 61.179 55.000 0.00 0.00 0.00 4.94
347 348 1.901464 GCCACCAAACATCCACGGT 60.901 57.895 0.00 0.00 0.00 4.83
348 349 0.606944 GCCACCAAACATCCACGGTA 60.607 55.000 0.00 0.00 0.00 4.02
349 350 1.953311 GCCACCAAACATCCACGGTAT 60.953 52.381 0.00 0.00 0.00 2.73
350 351 2.442413 CCACCAAACATCCACGGTATT 58.558 47.619 0.00 0.00 0.00 1.89
351 352 3.611970 CCACCAAACATCCACGGTATTA 58.388 45.455 0.00 0.00 0.00 0.98
352 353 3.375922 CCACCAAACATCCACGGTATTAC 59.624 47.826 0.00 0.00 0.00 1.89
353 354 3.375922 CACCAAACATCCACGGTATTACC 59.624 47.826 2.50 2.50 34.05 2.85
354 355 3.264964 ACCAAACATCCACGGTATTACCT 59.735 43.478 11.05 0.00 35.66 3.08
355 356 3.875134 CCAAACATCCACGGTATTACCTC 59.125 47.826 11.05 0.00 35.66 3.85
356 357 3.832615 AACATCCACGGTATTACCTCC 57.167 47.619 11.05 0.00 35.66 4.30
357 358 2.754465 ACATCCACGGTATTACCTCCA 58.246 47.619 11.05 0.00 35.66 3.86
358 359 2.433239 ACATCCACGGTATTACCTCCAC 59.567 50.000 11.05 0.00 35.66 4.02
359 360 1.488390 TCCACGGTATTACCTCCACC 58.512 55.000 11.05 0.00 35.66 4.61
360 361 1.196911 CCACGGTATTACCTCCACCA 58.803 55.000 11.05 0.00 35.66 4.17
361 362 1.766496 CCACGGTATTACCTCCACCAT 59.234 52.381 11.05 0.00 35.66 3.55
362 363 2.224209 CCACGGTATTACCTCCACCATC 60.224 54.545 11.05 0.00 35.66 3.51
363 364 2.044758 ACGGTATTACCTCCACCATCC 58.955 52.381 11.05 0.00 35.66 3.51
364 365 1.346722 CGGTATTACCTCCACCATCCC 59.653 57.143 11.05 0.00 35.66 3.85
365 366 1.346722 GGTATTACCTCCACCATCCCG 59.653 57.143 5.56 0.00 34.73 5.14
366 367 1.346722 GTATTACCTCCACCATCCCGG 59.653 57.143 0.00 0.00 42.50 5.73
367 368 1.705997 ATTACCTCCACCATCCCGGC 61.706 60.000 0.00 0.00 39.03 6.13
368 369 3.627332 TACCTCCACCATCCCGGCA 62.627 63.158 0.00 0.00 39.03 5.69
369 370 4.181010 CCTCCACCATCCCGGCAG 62.181 72.222 0.00 0.00 39.03 4.85
370 371 4.864334 CTCCACCATCCCGGCAGC 62.864 72.222 0.00 0.00 39.03 5.25
375 376 3.933722 CCATCCCGGCAGCGAGAT 61.934 66.667 0.00 0.00 0.00 2.75
376 377 2.356793 CATCCCGGCAGCGAGATC 60.357 66.667 0.00 0.00 0.00 2.75
377 378 2.522923 ATCCCGGCAGCGAGATCT 60.523 61.111 0.00 0.00 0.00 2.75
378 379 1.228583 ATCCCGGCAGCGAGATCTA 60.229 57.895 0.00 0.00 0.00 1.98
379 380 1.247419 ATCCCGGCAGCGAGATCTAG 61.247 60.000 0.00 0.00 0.00 2.43
380 381 2.049618 CCGGCAGCGAGATCTAGC 60.050 66.667 19.06 19.06 0.00 3.42
381 382 2.049618 CGGCAGCGAGATCTAGCC 60.050 66.667 22.38 18.09 41.86 3.93
382 383 2.049618 GGCAGCGAGATCTAGCCG 60.050 66.667 22.38 14.71 35.42 5.52
402 403 4.344865 GGCCCGACAAAGCCCAGA 62.345 66.667 0.00 0.00 43.76 3.86
403 404 2.044946 GCCCGACAAAGCCCAGAT 60.045 61.111 0.00 0.00 0.00 2.90
404 405 2.115291 GCCCGACAAAGCCCAGATC 61.115 63.158 0.00 0.00 0.00 2.75
405 406 1.815421 CCCGACAAAGCCCAGATCG 60.815 63.158 0.00 0.00 0.00 3.69
406 407 1.815421 CCGACAAAGCCCAGATCGG 60.815 63.158 0.00 0.00 45.61 4.18
421 422 4.680237 CGGGCTCCGTCACTGCAA 62.680 66.667 5.56 0.00 42.73 4.08
422 423 2.743928 GGGCTCCGTCACTGCAAG 60.744 66.667 0.00 0.00 42.29 4.01
423 424 3.426568 GGCTCCGTCACTGCAAGC 61.427 66.667 0.00 0.00 37.60 4.01
424 425 3.426568 GCTCCGTCACTGCAAGCC 61.427 66.667 0.00 0.00 37.60 4.35
425 426 2.031012 CTCCGTCACTGCAAGCCA 59.969 61.111 0.00 0.00 37.60 4.75
426 427 2.280797 TCCGTCACTGCAAGCCAC 60.281 61.111 0.00 0.00 37.60 5.01
427 428 3.357079 CCGTCACTGCAAGCCACC 61.357 66.667 0.00 0.00 37.60 4.61
428 429 3.716006 CGTCACTGCAAGCCACCG 61.716 66.667 0.00 0.00 37.60 4.94
429 430 4.030452 GTCACTGCAAGCCACCGC 62.030 66.667 0.00 0.00 37.60 5.68
442 443 4.719369 ACCGCGTCGCCAACTCTC 62.719 66.667 12.44 0.00 0.00 3.20
444 445 4.421479 CGCGTCGCCAACTCTCCT 62.421 66.667 12.44 0.00 0.00 3.69
445 446 2.507324 GCGTCGCCAACTCTCCTC 60.507 66.667 5.75 0.00 0.00 3.71
446 447 2.202492 CGTCGCCAACTCTCCTCG 60.202 66.667 0.00 0.00 0.00 4.63
447 448 2.507324 GTCGCCAACTCTCCTCGC 60.507 66.667 0.00 0.00 0.00 5.03
448 449 4.116328 TCGCCAACTCTCCTCGCG 62.116 66.667 0.00 0.00 44.00 5.87
450 451 4.742201 GCCAACTCTCCTCGCGCA 62.742 66.667 8.75 0.00 0.00 6.09
451 452 2.507992 CCAACTCTCCTCGCGCAG 60.508 66.667 8.75 3.84 0.00 5.18
452 453 2.568612 CAACTCTCCTCGCGCAGA 59.431 61.111 8.75 4.86 0.00 4.26
453 454 1.140589 CAACTCTCCTCGCGCAGAT 59.859 57.895 8.75 0.00 0.00 2.90
454 455 0.869454 CAACTCTCCTCGCGCAGATC 60.869 60.000 8.75 0.00 0.00 2.75
455 456 1.315981 AACTCTCCTCGCGCAGATCA 61.316 55.000 8.75 0.00 0.00 2.92
456 457 1.008652 CTCTCCTCGCGCAGATCAG 60.009 63.158 8.75 4.93 0.00 2.90
457 458 2.657944 CTCCTCGCGCAGATCAGC 60.658 66.667 8.75 0.00 0.00 4.26
458 459 4.212913 TCCTCGCGCAGATCAGCC 62.213 66.667 8.75 0.00 0.00 4.85
460 461 4.218578 CTCGCGCAGATCAGCCCT 62.219 66.667 8.75 0.00 0.00 5.19
461 462 3.729965 CTCGCGCAGATCAGCCCTT 62.730 63.158 8.75 0.00 0.00 3.95
462 463 3.570638 CGCGCAGATCAGCCCTTG 61.571 66.667 8.75 0.00 0.00 3.61
463 464 3.207669 GCGCAGATCAGCCCTTGG 61.208 66.667 0.30 0.00 0.00 3.61
474 475 4.641645 CCCTTGGCACGGCACAGA 62.642 66.667 4.13 0.00 0.00 3.41
475 476 3.052082 CCTTGGCACGGCACAGAG 61.052 66.667 0.00 0.00 0.00 3.35
476 477 2.031012 CTTGGCACGGCACAGAGA 59.969 61.111 0.00 0.00 0.00 3.10
477 478 2.280797 TTGGCACGGCACAGAGAC 60.281 61.111 0.00 0.00 0.00 3.36
478 479 3.825160 TTGGCACGGCACAGAGACC 62.825 63.158 0.00 0.00 0.00 3.85
483 484 3.414700 CGGCACAGAGACCGCAAC 61.415 66.667 0.00 0.00 43.44 4.17
484 485 2.280797 GGCACAGAGACCGCAACA 60.281 61.111 0.00 0.00 0.00 3.33
485 486 2.320587 GGCACAGAGACCGCAACAG 61.321 63.158 0.00 0.00 0.00 3.16
486 487 2.959357 GCACAGAGACCGCAACAGC 61.959 63.158 0.00 0.00 0.00 4.40
487 488 2.031163 ACAGAGACCGCAACAGCC 59.969 61.111 0.00 0.00 0.00 4.85
488 489 3.114616 CAGAGACCGCAACAGCCG 61.115 66.667 0.00 0.00 0.00 5.52
489 490 3.303135 AGAGACCGCAACAGCCGA 61.303 61.111 0.00 0.00 0.00 5.54
490 491 3.112709 GAGACCGCAACAGCCGAC 61.113 66.667 0.00 0.00 0.00 4.79
491 492 4.681978 AGACCGCAACAGCCGACC 62.682 66.667 0.00 0.00 0.00 4.79
492 493 4.980805 GACCGCAACAGCCGACCA 62.981 66.667 0.00 0.00 0.00 4.02
529 530 3.148340 GGACACCACCGGAACATAC 57.852 57.895 9.46 0.00 0.00 2.39
530 531 0.322322 GGACACCACCGGAACATACA 59.678 55.000 9.46 0.00 0.00 2.29
531 532 1.270947 GGACACCACCGGAACATACAA 60.271 52.381 9.46 0.00 0.00 2.41
532 533 2.073816 GACACCACCGGAACATACAAG 58.926 52.381 9.46 0.00 0.00 3.16
533 534 1.271163 ACACCACCGGAACATACAAGG 60.271 52.381 9.46 0.00 0.00 3.61
534 535 0.322187 ACCACCGGAACATACAAGGC 60.322 55.000 9.46 0.00 0.00 4.35
535 536 1.029947 CCACCGGAACATACAAGGCC 61.030 60.000 9.46 0.00 0.00 5.19
536 537 1.078708 ACCGGAACATACAAGGCCG 60.079 57.895 9.46 0.00 41.53 6.13
537 538 2.469516 CCGGAACATACAAGGCCGC 61.470 63.158 0.00 0.00 40.59 6.53
538 539 2.469516 CGGAACATACAAGGCCGCC 61.470 63.158 0.00 0.00 35.17 6.13
539 540 1.377987 GGAACATACAAGGCCGCCA 60.378 57.895 13.15 0.00 0.00 5.69
540 541 1.654023 GGAACATACAAGGCCGCCAC 61.654 60.000 13.15 0.00 0.00 5.01
541 542 1.654023 GAACATACAAGGCCGCCACC 61.654 60.000 13.15 0.00 0.00 4.61
542 543 2.828549 CATACAAGGCCGCCACCC 60.829 66.667 13.15 0.00 0.00 4.61
543 544 3.334891 ATACAAGGCCGCCACCCA 61.335 61.111 13.15 0.00 0.00 4.51
544 545 3.344137 ATACAAGGCCGCCACCCAG 62.344 63.158 13.15 0.00 0.00 4.45
551 552 4.864334 CCGCCACCCAGCAGATCC 62.864 72.222 0.00 0.00 0.00 3.36
554 555 4.100084 CCACCCAGCAGATCCGCA 62.100 66.667 3.28 0.00 0.00 5.69
555 556 2.821366 CACCCAGCAGATCCGCAC 60.821 66.667 3.28 0.00 0.00 5.34
556 557 4.101448 ACCCAGCAGATCCGCACC 62.101 66.667 3.28 0.00 0.00 5.01
591 592 3.134127 GCATCCCTGCGGAACCAC 61.134 66.667 0.00 0.00 43.10 4.16
592 593 2.819595 CATCCCTGCGGAACCACG 60.820 66.667 0.00 0.00 43.10 4.94
601 602 3.660111 GGAACCACGCCTGTGCAC 61.660 66.667 10.75 10.75 45.04 4.57
602 603 3.660111 GAACCACGCCTGTGCACC 61.660 66.667 15.69 0.00 45.04 5.01
603 604 4.497984 AACCACGCCTGTGCACCA 62.498 61.111 15.69 1.31 45.04 4.17
639 640 2.044451 CCTGGGCCAACCGCATTA 60.044 61.111 8.04 0.00 44.64 1.90
640 641 2.414785 CCTGGGCCAACCGCATTAC 61.415 63.158 8.04 0.00 44.64 1.89
641 642 2.748251 TGGGCCAACCGCATTACG 60.748 61.111 2.13 0.00 44.64 3.18
642 643 4.187810 GGGCCAACCGCATTACGC 62.188 66.667 4.39 0.00 41.76 4.42
643 644 4.187810 GGCCAACCGCATTACGCC 62.188 66.667 0.00 0.00 41.76 5.68
644 645 4.530325 GCCAACCGCATTACGCCG 62.530 66.667 0.00 0.00 41.76 6.46
645 646 3.122323 CCAACCGCATTACGCCGT 61.122 61.111 0.00 0.00 41.76 5.68
646 647 2.398036 CAACCGCATTACGCCGTC 59.602 61.111 0.00 0.00 41.76 4.79
647 648 3.183323 AACCGCATTACGCCGTCG 61.183 61.111 0.00 0.00 41.76 5.12
648 649 3.629883 AACCGCATTACGCCGTCGA 62.630 57.895 0.00 0.00 41.76 4.20
649 650 3.320078 CCGCATTACGCCGTCGAG 61.320 66.667 0.00 0.00 41.76 4.04
650 651 3.972803 CGCATTACGCCGTCGAGC 61.973 66.667 0.00 0.00 39.41 5.03
688 689 4.487412 CGTCCTACCGCGACCACC 62.487 72.222 8.23 0.00 0.00 4.61
689 690 3.376078 GTCCTACCGCGACCACCA 61.376 66.667 8.23 0.00 0.00 4.17
690 691 3.066190 TCCTACCGCGACCACCAG 61.066 66.667 8.23 0.00 0.00 4.00
691 692 4.814294 CCTACCGCGACCACCAGC 62.814 72.222 8.23 0.00 0.00 4.85
758 759 4.803426 GACCGGCTCCAGCTCGTG 62.803 72.222 0.00 0.00 41.70 4.35
780 781 4.821589 CCCGCGCCTCTCCTTGTC 62.822 72.222 0.00 0.00 0.00 3.18
782 783 4.116328 CGCGCCTCTCCTTGTCGA 62.116 66.667 0.00 0.00 0.00 4.20
783 784 2.202676 GCGCCTCTCCTTGTCGAG 60.203 66.667 0.00 0.00 0.00 4.04
784 785 2.202676 CGCCTCTCCTTGTCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
785 786 2.973899 GCCTCTCCTTGTCGAGCA 59.026 61.111 0.00 0.00 0.00 4.26
786 787 1.153667 GCCTCTCCTTGTCGAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
787 788 1.153667 CCTCTCCTTGTCGAGCAGC 60.154 63.158 0.00 0.00 0.00 5.25
788 789 1.153667 CTCTCCTTGTCGAGCAGCC 60.154 63.158 0.00 0.00 0.00 4.85
789 790 2.125350 CTCCTTGTCGAGCAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
790 791 3.672295 CTCCTTGTCGAGCAGCCCC 62.672 68.421 0.00 0.00 0.00 5.80
814 815 4.394712 CCCTGGACACGGGCAGTC 62.395 72.222 0.00 0.00 42.17 3.51
815 816 3.625897 CCTGGACACGGGCAGTCA 61.626 66.667 6.36 0.00 37.74 3.41
886 887 2.119655 CGAGTAGGTGTCTCCCCCG 61.120 68.421 0.00 0.00 36.75 5.73
915 918 1.209127 CAAAAAGTAGCGCCCACCG 59.791 57.895 2.29 0.00 40.75 4.94
960 963 2.415608 CCCGCAGACGCTAGAAGGA 61.416 63.158 0.00 0.00 38.22 3.36
975 978 6.128282 CGCTAGAAGGAAAACAGAGCAAATTA 60.128 38.462 0.00 0.00 0.00 1.40
995 1061 1.361668 CCCGCATCAACCTCTTGTCG 61.362 60.000 0.00 0.00 0.00 4.35
1281 1350 2.531942 ACCCCGCCCTTCCTTCTT 60.532 61.111 0.00 0.00 0.00 2.52
1303 1372 4.194720 CCGAGGGAGCCTTCGTCG 62.195 72.222 17.91 8.12 40.70 5.12
1332 1401 0.611062 TCACCCTCGATGACTCCGTT 60.611 55.000 0.00 0.00 0.00 4.44
1353 1422 0.608582 ACCACTTCGTCTACTCCGCT 60.609 55.000 0.00 0.00 0.00 5.52
1368 1437 2.838225 GCTCGAGGAATCCCCGGA 60.838 66.667 15.58 0.00 40.87 5.14
1409 1478 3.956314 CCCGGACCCGAAACCCAA 61.956 66.667 10.42 0.00 42.83 4.12
1482 1551 1.224592 CTATGCCGTGGCCTTCCTT 59.775 57.895 8.69 0.00 41.09 3.36
1512 1581 0.470341 GGGAATCTAGTGACCAGGCC 59.530 60.000 0.00 0.00 0.00 5.19
1713 1782 2.230508 TCTTAGCAACCTGTTCGACGAT 59.769 45.455 0.00 0.00 0.00 3.73
1822 1891 2.416747 TCTGCGATATAACATGCTGCC 58.583 47.619 0.00 0.00 0.00 4.85
1995 2064 7.825331 TGACCCAAGTTATTTGTCATTGTTA 57.175 32.000 0.00 0.00 34.87 2.41
2127 2196 1.444553 CGAGGAAGACGACACAGCC 60.445 63.158 0.00 0.00 0.00 4.85
2193 2262 0.474273 TCCCGGTTTCTACCCAACCT 60.474 55.000 0.00 0.00 41.54 3.50
2220 2289 2.095110 CACCGTTACGATGTACTGTCCA 60.095 50.000 6.24 0.00 0.00 4.02
2249 2318 5.070580 CCTTCCCCAAGTACTACCTCAATAG 59.929 48.000 0.00 0.00 0.00 1.73
2358 2427 6.210287 TGTTTCAAACCGGAACTTTTGTAT 57.790 33.333 9.46 0.00 34.81 2.29
2371 2468 8.717821 CGGAACTTTTGTATTCTTGATTGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
2395 2492 2.493278 AGTTCTTGTGTGTGCTTGCTTT 59.507 40.909 0.00 0.00 0.00 3.51
2422 2519 9.431887 GGAGAATGTATGTTTCAGTACTAACAA 57.568 33.333 13.74 0.76 37.75 2.83
2457 2554 9.729281 TTTACTCCATCCGTTTTTATTTACTCT 57.271 29.630 0.00 0.00 0.00 3.24
2458 2555 7.611213 ACTCCATCCGTTTTTATTTACTCTG 57.389 36.000 0.00 0.00 0.00 3.35
2706 2808 3.374988 TCATGCTTAGGAAATGCTTCACG 59.625 43.478 0.00 0.00 32.75 4.35
2826 2930 7.812306 ACATTACCTATTTACCTGTAGCCATT 58.188 34.615 0.00 0.00 0.00 3.16
2937 3041 6.019881 GCGAAGTTTATGTGCATTTATTTCCC 60.020 38.462 0.00 0.00 0.00 3.97
3064 3170 0.183731 GCCCCAATAACTCTGGAGGG 59.816 60.000 2.58 0.00 35.85 4.30
3087 3193 1.270907 GTGCAGAGGAAGAGGAGGAA 58.729 55.000 0.00 0.00 0.00 3.36
3157 3266 4.399004 TTTGCTGTATTTTGTTGGCTGT 57.601 36.364 0.00 0.00 0.00 4.40
3198 3307 8.909708 TTTGTAAAAGTGTTCTTTCATCTGTG 57.090 30.769 0.00 0.00 42.26 3.66
3213 3322 8.862325 TTTCATCTGTGTGGAATGTAATAGTT 57.138 30.769 0.00 0.00 0.00 2.24
3297 3406 6.206243 GCTCTGCATGTATAATGTTCTGGAAT 59.794 38.462 0.00 0.00 0.00 3.01
3336 3445 6.183360 GGTTCAGTTTAAGCTGTGTTTAACCT 60.183 38.462 22.13 0.00 36.37 3.50
3462 3571 5.647658 TGTTGCTTCTATCTTGTACCAATGG 59.352 40.000 0.00 0.00 0.00 3.16
3494 3603 6.743110 TGCAACATGTGTCTGCTTATTTTTA 58.257 32.000 18.99 0.00 35.03 1.52
3515 3624 4.569719 ATTCTGGTGGTAAGGTAAGTGG 57.430 45.455 0.00 0.00 0.00 4.00
3517 3626 2.901839 TCTGGTGGTAAGGTAAGTGGTC 59.098 50.000 0.00 0.00 0.00 4.02
3551 3660 5.006386 CAGTCCAGTGAAGCTCCTTTTAAT 58.994 41.667 0.00 0.00 0.00 1.40
3579 3688 2.548057 AGATTGTCGAACAAACGCACAT 59.452 40.909 4.87 0.00 41.96 3.21
3584 3693 1.867865 TCGAACAAACGCACATGCTTA 59.132 42.857 1.82 0.00 39.32 3.09
3597 3706 2.434336 ACATGCTTATGCGTTCCTAGGA 59.566 45.455 7.62 7.62 43.34 2.94
3622 3731 3.775316 ACCCAGTTCGGAGAGTAATTGAT 59.225 43.478 0.00 0.00 38.43 2.57
3653 3762 3.199946 ACCACATTTCATGTATCCGTCCT 59.800 43.478 0.00 0.00 42.70 3.85
3663 3772 6.304624 TCATGTATCCGTCCTACAGAACTAT 58.695 40.000 0.00 0.00 32.91 2.12
3693 3802 5.730296 TGAAAACTGACCAAAAACTCCAA 57.270 34.783 0.00 0.00 0.00 3.53
3779 3888 4.380843 ACCTGTTTATGACATGTGGGAA 57.619 40.909 1.15 0.00 36.03 3.97
3823 3932 7.987649 TGTTTATTTTGACCGTCAAGTTAACT 58.012 30.769 13.51 1.12 37.70 2.24
3939 4241 4.305956 AAACAGGGCTGCAGGGGG 62.306 66.667 17.12 0.00 0.00 5.40
3996 4298 2.043248 GTGCGGGTCTAGGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
4000 4302 0.543174 GCGGGTCTAGGAGGGATCAT 60.543 60.000 0.00 0.00 0.00 2.45
4006 4308 1.459348 TAGGAGGGATCATGCGGCA 60.459 57.895 4.58 4.58 0.00 5.69
4189 4492 4.537433 CGGGTAGCAGAGGCCAGC 62.537 72.222 5.01 6.06 42.56 4.85
4190 4493 3.402681 GGGTAGCAGAGGCCAGCA 61.403 66.667 5.01 0.00 42.56 4.41
4191 4494 2.188994 GGTAGCAGAGGCCAGCAG 59.811 66.667 5.01 0.00 42.56 4.24
4192 4495 2.513435 GTAGCAGAGGCCAGCAGC 60.513 66.667 5.01 5.05 42.56 5.25
4193 4496 4.152964 TAGCAGAGGCCAGCAGCG 62.153 66.667 5.01 0.00 45.17 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.431725 CTTCGCTTCCAACGCCCC 61.432 66.667 0.00 0.00 0.00 5.80
15 16 3.431725 CCTTCGCTTCCAACGCCC 61.432 66.667 0.00 0.00 0.00 6.13
16 17 3.431725 CCCTTCGCTTCCAACGCC 61.432 66.667 0.00 0.00 0.00 5.68
17 18 2.358247 TCCCTTCGCTTCCAACGC 60.358 61.111 0.00 0.00 0.00 4.84
18 19 1.004918 AGTCCCTTCGCTTCCAACG 60.005 57.895 0.00 0.00 0.00 4.10
19 20 1.578206 GCAGTCCCTTCGCTTCCAAC 61.578 60.000 0.00 0.00 0.00 3.77
20 21 1.302511 GCAGTCCCTTCGCTTCCAA 60.303 57.895 0.00 0.00 0.00 3.53
21 22 0.902984 TAGCAGTCCCTTCGCTTCCA 60.903 55.000 0.00 0.00 37.20 3.53
22 23 0.179097 CTAGCAGTCCCTTCGCTTCC 60.179 60.000 0.00 0.00 37.20 3.46
23 24 0.533032 ACTAGCAGTCCCTTCGCTTC 59.467 55.000 0.00 0.00 37.20 3.86
24 25 0.247736 CACTAGCAGTCCCTTCGCTT 59.752 55.000 0.00 0.00 37.20 4.68
25 26 0.900647 ACACTAGCAGTCCCTTCGCT 60.901 55.000 0.00 0.00 39.80 4.93
26 27 0.458716 GACACTAGCAGTCCCTTCGC 60.459 60.000 4.92 0.00 0.00 4.70
27 28 3.723554 GACACTAGCAGTCCCTTCG 57.276 57.895 4.92 0.00 0.00 3.79
33 34 0.685097 TGTTGGGGACACTAGCAGTC 59.315 55.000 7.26 7.26 42.67 3.51
34 35 0.687354 CTGTTGGGGACACTAGCAGT 59.313 55.000 0.00 0.00 42.67 4.40
35 36 0.036010 CCTGTTGGGGACACTAGCAG 60.036 60.000 0.00 0.00 42.67 4.24
36 37 2.066340 CCTGTTGGGGACACTAGCA 58.934 57.895 0.00 0.00 42.67 3.49
37 38 1.377333 GCCTGTTGGGGACACTAGC 60.377 63.158 0.00 0.00 42.67 3.42
55 56 4.308458 TTGTCCTCACGTGGCCCG 62.308 66.667 17.00 11.48 44.03 6.13
56 57 2.358737 CTTGTCCTCACGTGGCCC 60.359 66.667 17.00 2.14 0.00 5.80
57 58 1.961277 CACTTGTCCTCACGTGGCC 60.961 63.158 17.00 0.00 39.24 5.36
58 59 1.227556 ACACTTGTCCTCACGTGGC 60.228 57.895 17.00 4.64 44.54 5.01
59 60 0.179084 ACACACTTGTCCTCACGTGG 60.179 55.000 17.00 6.38 44.54 4.94
60 61 0.930310 CACACACTTGTCCTCACGTG 59.070 55.000 9.94 9.94 45.34 4.49
61 62 0.810031 GCACACACTTGTCCTCACGT 60.810 55.000 0.00 0.00 31.66 4.49
62 63 1.821241 CGCACACACTTGTCCTCACG 61.821 60.000 0.00 0.00 31.66 4.35
63 64 1.498865 CCGCACACACTTGTCCTCAC 61.499 60.000 0.00 0.00 31.66 3.51
64 65 1.227527 CCGCACACACTTGTCCTCA 60.228 57.895 0.00 0.00 31.66 3.86
65 66 2.607892 GCCGCACACACTTGTCCTC 61.608 63.158 0.00 0.00 31.66 3.71
66 67 2.591715 GCCGCACACACTTGTCCT 60.592 61.111 0.00 0.00 31.66 3.85
67 68 4.012895 CGCCGCACACACTTGTCC 62.013 66.667 0.00 0.00 31.66 4.02
68 69 2.943345 CTCGCCGCACACACTTGTC 61.943 63.158 0.00 0.00 31.66 3.18
69 70 2.967076 CTCGCCGCACACACTTGT 60.967 61.111 0.00 0.00 35.84 3.16
70 71 4.374702 GCTCGCCGCACACACTTG 62.375 66.667 0.00 0.00 38.92 3.16
90 91 2.279937 GAAACGGACATCGCGCAGAC 62.280 60.000 8.75 0.00 43.89 3.51
91 92 2.048597 AAACGGACATCGCGCAGA 60.049 55.556 8.75 6.27 43.89 4.26
92 93 2.379634 TGAAACGGACATCGCGCAG 61.380 57.895 8.75 0.00 43.89 5.18
93 94 2.356433 TGAAACGGACATCGCGCA 60.356 55.556 8.75 0.00 43.89 6.09
94 95 2.095843 GTGAAACGGACATCGCGC 59.904 61.111 0.00 0.00 43.89 6.86
95 96 2.736682 GGGTGAAACGGACATCGCG 61.737 63.158 0.00 0.00 43.89 5.87
96 97 2.396157 GGGGTGAAACGGACATCGC 61.396 63.158 0.00 0.00 43.89 4.58
97 98 0.604243 TTGGGGTGAAACGGACATCG 60.604 55.000 0.00 0.00 45.88 3.84
98 99 1.268625 GTTTGGGGTGAAACGGACATC 59.731 52.381 0.00 0.00 38.12 3.06
99 100 1.133606 AGTTTGGGGTGAAACGGACAT 60.134 47.619 0.00 0.00 40.20 3.06
100 101 0.256464 AGTTTGGGGTGAAACGGACA 59.744 50.000 0.00 0.00 40.20 4.02
101 102 0.949397 GAGTTTGGGGTGAAACGGAC 59.051 55.000 0.00 0.00 40.20 4.79
102 103 0.533308 CGAGTTTGGGGTGAAACGGA 60.533 55.000 0.00 0.00 40.20 4.69
103 104 1.512156 CCGAGTTTGGGGTGAAACGG 61.512 60.000 0.00 0.00 40.20 4.44
104 105 1.946267 CCGAGTTTGGGGTGAAACG 59.054 57.895 0.00 0.00 40.20 3.60
105 106 1.658114 GCCGAGTTTGGGGTGAAAC 59.342 57.895 0.00 0.00 36.28 2.78
106 107 1.894756 CGCCGAGTTTGGGGTGAAA 60.895 57.895 0.00 0.00 37.20 2.69
107 108 2.281208 CGCCGAGTTTGGGGTGAA 60.281 61.111 0.00 0.00 37.20 3.18
110 111 4.572571 TTGCGCCGAGTTTGGGGT 62.573 61.111 4.18 0.00 43.50 4.95
111 112 3.737172 CTTGCGCCGAGTTTGGGG 61.737 66.667 4.18 0.00 44.36 4.96
112 113 2.070654 AAACTTGCGCCGAGTTTGGG 62.071 55.000 27.70 3.91 43.80 4.12
113 114 1.358759 AAACTTGCGCCGAGTTTGG 59.641 52.632 27.70 5.23 43.80 3.28
115 116 1.358759 CCAAACTTGCGCCGAGTTT 59.641 52.632 24.71 24.71 45.62 2.66
116 117 2.551912 CCCAAACTTGCGCCGAGTT 61.552 57.895 17.47 17.47 39.51 3.01
117 118 2.978010 CCCAAACTTGCGCCGAGT 60.978 61.111 4.18 6.29 0.00 4.18
118 119 4.404654 GCCCAAACTTGCGCCGAG 62.405 66.667 4.18 5.52 0.00 4.63
122 123 4.362476 CCTGGCCCAAACTTGCGC 62.362 66.667 0.00 0.00 0.00 6.09
123 124 3.683937 CCCTGGCCCAAACTTGCG 61.684 66.667 0.00 0.00 0.00 4.85
124 125 1.610379 ATCCCTGGCCCAAACTTGC 60.610 57.895 0.00 0.00 0.00 4.01
125 126 1.259840 CCATCCCTGGCCCAAACTTG 61.260 60.000 0.00 0.00 35.23 3.16
126 127 1.079073 CCATCCCTGGCCCAAACTT 59.921 57.895 0.00 0.00 35.23 2.66
127 128 2.772924 CCATCCCTGGCCCAAACT 59.227 61.111 0.00 0.00 35.23 2.66
128 129 2.364186 CCCATCCCTGGCCCAAAC 60.364 66.667 0.00 0.00 41.64 2.93
129 130 2.868566 ACCCATCCCTGGCCCAAA 60.869 61.111 0.00 0.00 41.64 3.28
130 131 3.346734 GACCCATCCCTGGCCCAA 61.347 66.667 0.00 0.00 41.64 4.12
133 134 2.493273 TTTTCGACCCATCCCTGGCC 62.493 60.000 0.00 0.00 41.64 5.36
134 135 1.001393 TTTTCGACCCATCCCTGGC 60.001 57.895 0.00 0.00 41.64 4.85
135 136 2.868253 GTTTTCGACCCATCCCTGG 58.132 57.895 0.00 0.00 42.73 4.45
154 155 1.014352 CAAATGTCCGGATTCCGTCC 58.986 55.000 22.83 13.25 46.80 4.79
155 156 1.664151 GACAAATGTCCGGATTCCGTC 59.336 52.381 22.83 15.53 46.80 4.79
156 157 1.734163 GACAAATGTCCGGATTCCGT 58.266 50.000 22.83 1.21 46.80 4.69
166 167 1.471287 GGCCCTAAACGGACAAATGTC 59.529 52.381 4.96 4.96 44.04 3.06
167 168 1.541379 GGCCCTAAACGGACAAATGT 58.459 50.000 0.00 0.00 33.16 2.71
168 169 0.450184 CGGCCCTAAACGGACAAATG 59.550 55.000 0.00 0.00 33.16 2.32
169 170 1.310216 GCGGCCCTAAACGGACAAAT 61.310 55.000 0.00 0.00 33.16 2.32
170 171 1.967494 GCGGCCCTAAACGGACAAA 60.967 57.895 0.00 0.00 33.16 2.83
171 172 2.358984 GCGGCCCTAAACGGACAA 60.359 61.111 0.00 0.00 33.16 3.18
172 173 4.745751 CGCGGCCCTAAACGGACA 62.746 66.667 0.00 0.00 33.16 4.02
177 178 4.454717 CAACGCGCGGCCCTAAAC 62.455 66.667 35.22 0.00 0.00 2.01
190 191 2.401990 GAATAACGCGGCCCAACG 59.598 61.111 12.47 0.60 0.00 4.10
191 192 2.300597 GACGAATAACGCGGCCCAAC 62.301 60.000 12.47 0.00 46.94 3.77
192 193 2.047083 ACGAATAACGCGGCCCAA 60.047 55.556 12.47 0.00 46.94 4.12
193 194 2.509786 GACGAATAACGCGGCCCA 60.510 61.111 12.47 0.00 46.94 5.36
196 197 2.338936 GAACGGACGAATAACGCGGC 62.339 60.000 12.47 0.00 46.94 6.53
197 198 0.799534 AGAACGGACGAATAACGCGG 60.800 55.000 12.47 0.00 46.94 6.46
198 199 1.510338 GTAGAACGGACGAATAACGCG 59.490 52.381 3.53 3.53 46.94 6.01
199 200 2.277316 GTGTAGAACGGACGAATAACGC 59.723 50.000 0.00 0.00 46.94 4.84
201 202 3.836949 TGGTGTAGAACGGACGAATAAC 58.163 45.455 0.00 0.00 0.00 1.89
202 203 4.517952 TTGGTGTAGAACGGACGAATAA 57.482 40.909 0.00 0.00 0.00 1.40
203 204 4.236935 GTTTGGTGTAGAACGGACGAATA 58.763 43.478 0.00 0.00 0.00 1.75
204 205 3.062042 GTTTGGTGTAGAACGGACGAAT 58.938 45.455 0.00 0.00 0.00 3.34
205 206 2.159128 TGTTTGGTGTAGAACGGACGAA 60.159 45.455 0.00 0.00 0.00 3.85
206 207 1.408340 TGTTTGGTGTAGAACGGACGA 59.592 47.619 0.00 0.00 0.00 4.20
207 208 1.790623 CTGTTTGGTGTAGAACGGACG 59.209 52.381 0.00 0.00 34.77 4.79
208 209 3.102052 TCTGTTTGGTGTAGAACGGAC 57.898 47.619 0.00 0.00 36.51 4.79
209 210 2.544277 CGTCTGTTTGGTGTAGAACGGA 60.544 50.000 0.00 0.00 38.47 4.69
210 211 1.790623 CGTCTGTTTGGTGTAGAACGG 59.209 52.381 0.00 0.00 34.26 4.44
211 212 1.191647 GCGTCTGTTTGGTGTAGAACG 59.808 52.381 0.00 0.00 0.00 3.95
212 213 2.206750 TGCGTCTGTTTGGTGTAGAAC 58.793 47.619 0.00 0.00 0.00 3.01
213 214 2.605837 TGCGTCTGTTTGGTGTAGAA 57.394 45.000 0.00 0.00 0.00 2.10
214 215 2.831685 ATGCGTCTGTTTGGTGTAGA 57.168 45.000 0.00 0.00 0.00 2.59
215 216 2.805671 TGAATGCGTCTGTTTGGTGTAG 59.194 45.455 0.00 0.00 0.00 2.74
216 217 2.805671 CTGAATGCGTCTGTTTGGTGTA 59.194 45.455 0.00 0.00 0.00 2.90
217 218 1.603802 CTGAATGCGTCTGTTTGGTGT 59.396 47.619 0.00 0.00 0.00 4.16
218 219 1.872952 TCTGAATGCGTCTGTTTGGTG 59.127 47.619 0.00 0.00 0.00 4.17
219 220 2.254546 TCTGAATGCGTCTGTTTGGT 57.745 45.000 0.00 0.00 0.00 3.67
220 221 4.631377 TCTTATCTGAATGCGTCTGTTTGG 59.369 41.667 0.00 0.00 0.00 3.28
221 222 5.784750 TCTTATCTGAATGCGTCTGTTTG 57.215 39.130 0.00 0.00 0.00 2.93
222 223 5.295292 CCATCTTATCTGAATGCGTCTGTTT 59.705 40.000 0.00 0.00 0.00 2.83
223 224 4.813161 CCATCTTATCTGAATGCGTCTGTT 59.187 41.667 0.00 0.00 0.00 3.16
224 225 4.100035 TCCATCTTATCTGAATGCGTCTGT 59.900 41.667 0.00 0.00 0.00 3.41
225 226 4.625028 TCCATCTTATCTGAATGCGTCTG 58.375 43.478 0.00 0.00 0.00 3.51
226 227 4.343526 ACTCCATCTTATCTGAATGCGTCT 59.656 41.667 0.00 0.00 0.00 4.18
227 228 4.626042 ACTCCATCTTATCTGAATGCGTC 58.374 43.478 0.00 0.00 0.00 5.19
228 229 4.626042 GACTCCATCTTATCTGAATGCGT 58.374 43.478 0.00 0.00 0.00 5.24
229 230 3.672397 CGACTCCATCTTATCTGAATGCG 59.328 47.826 0.00 0.00 0.00 4.73
230 231 3.431572 GCGACTCCATCTTATCTGAATGC 59.568 47.826 0.00 0.00 0.00 3.56
231 232 3.672397 CGCGACTCCATCTTATCTGAATG 59.328 47.826 0.00 0.00 0.00 2.67
232 233 3.858877 GCGCGACTCCATCTTATCTGAAT 60.859 47.826 12.10 0.00 0.00 2.57
233 234 2.543861 GCGCGACTCCATCTTATCTGAA 60.544 50.000 12.10 0.00 0.00 3.02
234 235 1.001268 GCGCGACTCCATCTTATCTGA 60.001 52.381 12.10 0.00 0.00 3.27
235 236 1.413382 GCGCGACTCCATCTTATCTG 58.587 55.000 12.10 0.00 0.00 2.90
236 237 0.315568 GGCGCGACTCCATCTTATCT 59.684 55.000 12.10 0.00 0.00 1.98
237 238 1.004277 CGGCGCGACTCCATCTTATC 61.004 60.000 12.10 0.00 0.00 1.75
238 239 1.007271 CGGCGCGACTCCATCTTAT 60.007 57.895 12.10 0.00 0.00 1.73
239 240 2.411701 CGGCGCGACTCCATCTTA 59.588 61.111 12.10 0.00 0.00 2.10
240 241 3.760035 ACGGCGCGACTCCATCTT 61.760 61.111 12.10 0.00 0.00 2.40
241 242 4.498520 CACGGCGCGACTCCATCT 62.499 66.667 12.10 0.00 0.00 2.90
246 247 4.719369 AACTCCACGGCGCGACTC 62.719 66.667 12.10 0.00 0.00 3.36
254 255 1.740296 CGTTAGGCCAACTCCACGG 60.740 63.158 5.01 0.00 34.16 4.94
255 256 1.740296 CCGTTAGGCCAACTCCACG 60.740 63.158 5.01 3.38 36.34 4.94
256 257 1.376812 CCCGTTAGGCCAACTCCAC 60.377 63.158 5.01 0.00 34.77 4.02
257 258 3.074281 CCCGTTAGGCCAACTCCA 58.926 61.111 5.01 0.00 34.77 3.86
266 267 4.832608 GCCGTCCAGCCCGTTAGG 62.833 72.222 0.00 0.00 39.47 2.69
307 308 0.951040 CCTCCTTGAAGCGTGTCCAC 60.951 60.000 0.00 0.00 0.00 4.02
308 309 1.118965 TCCTCCTTGAAGCGTGTCCA 61.119 55.000 0.00 0.00 0.00 4.02
309 310 0.034896 TTCCTCCTTGAAGCGTGTCC 59.965 55.000 0.00 0.00 0.00 4.02
310 311 1.433534 CTTCCTCCTTGAAGCGTGTC 58.566 55.000 0.00 0.00 35.72 3.67
311 312 3.614399 CTTCCTCCTTGAAGCGTGT 57.386 52.632 0.00 0.00 35.72 4.49
316 317 0.401738 TGGTGGCTTCCTCCTTGAAG 59.598 55.000 5.66 0.00 43.71 3.02
317 318 0.850100 TTGGTGGCTTCCTCCTTGAA 59.150 50.000 5.66 0.00 37.97 2.69
318 319 0.850100 TTTGGTGGCTTCCTCCTTGA 59.150 50.000 5.66 0.00 37.97 3.02
319 320 0.961753 GTTTGGTGGCTTCCTCCTTG 59.038 55.000 5.66 0.00 37.97 3.61
320 321 0.555769 TGTTTGGTGGCTTCCTCCTT 59.444 50.000 5.66 0.00 37.97 3.36
321 322 0.779997 ATGTTTGGTGGCTTCCTCCT 59.220 50.000 5.66 0.00 37.97 3.69
322 323 1.177401 GATGTTTGGTGGCTTCCTCC 58.823 55.000 0.00 0.00 37.65 4.30
323 324 1.177401 GGATGTTTGGTGGCTTCCTC 58.823 55.000 1.63 0.00 0.00 3.71
324 325 0.482446 TGGATGTTTGGTGGCTTCCT 59.518 50.000 0.00 0.00 32.23 3.36
325 326 0.603065 GTGGATGTTTGGTGGCTTCC 59.397 55.000 0.00 0.00 0.00 3.46
326 327 0.240945 CGTGGATGTTTGGTGGCTTC 59.759 55.000 0.00 0.00 0.00 3.86
327 328 1.178534 CCGTGGATGTTTGGTGGCTT 61.179 55.000 0.00 0.00 0.00 4.35
328 329 1.603455 CCGTGGATGTTTGGTGGCT 60.603 57.895 0.00 0.00 0.00 4.75
329 330 0.606944 TACCGTGGATGTTTGGTGGC 60.607 55.000 0.00 0.00 35.93 5.01
330 331 2.122783 ATACCGTGGATGTTTGGTGG 57.877 50.000 0.00 0.00 35.93 4.61
331 332 3.375922 GGTAATACCGTGGATGTTTGGTG 59.624 47.826 0.00 0.00 35.93 4.17
332 333 3.264964 AGGTAATACCGTGGATGTTTGGT 59.735 43.478 3.47 0.00 44.90 3.67
333 334 3.875134 GAGGTAATACCGTGGATGTTTGG 59.125 47.826 3.47 0.00 44.90 3.28
334 335 3.875134 GGAGGTAATACCGTGGATGTTTG 59.125 47.826 3.47 0.00 44.90 2.93
335 336 3.520317 TGGAGGTAATACCGTGGATGTTT 59.480 43.478 3.47 0.00 44.90 2.83
336 337 3.109151 TGGAGGTAATACCGTGGATGTT 58.891 45.455 3.47 0.00 44.90 2.71
337 338 2.433239 GTGGAGGTAATACCGTGGATGT 59.567 50.000 3.47 0.00 44.90 3.06
338 339 2.224209 GGTGGAGGTAATACCGTGGATG 60.224 54.545 3.47 0.00 44.90 3.51
339 340 2.044758 GGTGGAGGTAATACCGTGGAT 58.955 52.381 3.47 0.00 44.90 3.41
340 341 1.273154 TGGTGGAGGTAATACCGTGGA 60.273 52.381 3.47 0.00 44.90 4.02
341 342 1.196911 TGGTGGAGGTAATACCGTGG 58.803 55.000 3.47 0.00 44.90 4.94
342 343 2.224209 GGATGGTGGAGGTAATACCGTG 60.224 54.545 3.47 0.00 44.90 4.94
343 344 2.044758 GGATGGTGGAGGTAATACCGT 58.955 52.381 3.47 0.00 44.90 4.83
344 345 1.346722 GGGATGGTGGAGGTAATACCG 59.653 57.143 3.47 0.00 44.90 4.02
345 346 1.346722 CGGGATGGTGGAGGTAATACC 59.653 57.143 0.07 0.07 38.99 2.73
346 347 1.346722 CCGGGATGGTGGAGGTAATAC 59.653 57.143 0.00 0.00 0.00 1.89
347 348 1.724545 CCGGGATGGTGGAGGTAATA 58.275 55.000 0.00 0.00 0.00 0.98
348 349 1.705997 GCCGGGATGGTGGAGGTAAT 61.706 60.000 2.18 0.00 41.21 1.89
349 350 2.372074 GCCGGGATGGTGGAGGTAA 61.372 63.158 2.18 0.00 41.21 2.85
350 351 2.766651 GCCGGGATGGTGGAGGTA 60.767 66.667 2.18 0.00 41.21 3.08
352 353 4.181010 CTGCCGGGATGGTGGAGG 62.181 72.222 2.18 0.00 41.21 4.30
353 354 4.864334 GCTGCCGGGATGGTGGAG 62.864 72.222 2.18 0.00 41.21 3.86
362 363 2.647875 CTAGATCTCGCTGCCGGG 59.352 66.667 2.18 0.00 35.89 5.73
363 364 2.049618 GCTAGATCTCGCTGCCGG 60.050 66.667 11.80 0.00 34.56 6.13
364 365 2.049618 GGCTAGATCTCGCTGCCG 60.050 66.667 17.77 0.00 33.96 5.69
365 366 2.049618 CGGCTAGATCTCGCTGCC 60.050 66.667 17.77 16.19 40.14 4.85
370 371 2.049618 GCCTGCGGCTAGATCTCG 60.050 66.667 0.00 0.00 46.69 4.04
386 387 2.044946 ATCTGGGCTTTGTCGGGC 60.045 61.111 0.00 0.00 0.00 6.13
387 388 1.815421 CGATCTGGGCTTTGTCGGG 60.815 63.158 0.00 0.00 0.00 5.14
388 389 1.815421 CCGATCTGGGCTTTGTCGG 60.815 63.158 7.33 7.33 44.72 4.79
389 390 3.799753 CCGATCTGGGCTTTGTCG 58.200 61.111 0.00 0.00 0.00 4.35
405 406 2.743928 CTTGCAGTGACGGAGCCC 60.744 66.667 0.00 0.00 0.00 5.19
406 407 3.426568 GCTTGCAGTGACGGAGCC 61.427 66.667 0.00 0.00 0.00 4.70
407 408 3.426568 GGCTTGCAGTGACGGAGC 61.427 66.667 0.00 0.00 0.00 4.70
408 409 2.031012 TGGCTTGCAGTGACGGAG 59.969 61.111 0.00 0.00 0.00 4.63
409 410 2.280797 GTGGCTTGCAGTGACGGA 60.281 61.111 0.00 0.00 0.00 4.69
410 411 3.357079 GGTGGCTTGCAGTGACGG 61.357 66.667 0.00 0.00 0.00 4.79
411 412 3.716006 CGGTGGCTTGCAGTGACG 61.716 66.667 0.00 0.00 0.00 4.35
412 413 4.030452 GCGGTGGCTTGCAGTGAC 62.030 66.667 0.00 0.00 35.83 3.67
425 426 4.719369 GAGAGTTGGCGACGCGGT 62.719 66.667 14.61 0.00 32.79 5.68
427 428 4.421479 AGGAGAGTTGGCGACGCG 62.421 66.667 14.61 3.53 32.79 6.01
428 429 2.507324 GAGGAGAGTTGGCGACGC 60.507 66.667 12.43 12.43 0.00 5.19
429 430 2.202492 CGAGGAGAGTTGGCGACG 60.202 66.667 0.00 0.00 0.00 5.12
430 431 2.507324 GCGAGGAGAGTTGGCGAC 60.507 66.667 0.00 0.00 0.00 5.19
433 434 4.742201 TGCGCGAGGAGAGTTGGC 62.742 66.667 12.10 0.00 0.00 4.52
441 442 4.212913 GGCTGATCTGCGCGAGGA 62.213 66.667 12.10 7.17 0.00 3.71
446 447 3.207669 CCAAGGGCTGATCTGCGC 61.208 66.667 27.32 27.32 44.71 6.09
447 448 3.207669 GCCAAGGGCTGATCTGCG 61.208 66.667 17.16 5.44 46.69 5.18
457 458 4.641645 TCTGTGCCGTGCCAAGGG 62.642 66.667 0.00 0.00 0.00 3.95
458 459 3.052082 CTCTGTGCCGTGCCAAGG 61.052 66.667 0.00 0.00 0.00 3.61
459 460 2.031012 TCTCTGTGCCGTGCCAAG 59.969 61.111 0.00 0.00 0.00 3.61
460 461 2.280797 GTCTCTGTGCCGTGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
461 462 4.314440 GGTCTCTGTGCCGTGCCA 62.314 66.667 0.00 0.00 0.00 4.92
467 468 2.280797 TGTTGCGGTCTCTGTGCC 60.281 61.111 0.00 0.00 0.00 5.01
468 469 2.959357 GCTGTTGCGGTCTCTGTGC 61.959 63.158 0.00 0.00 0.00 4.57
469 470 2.320587 GGCTGTTGCGGTCTCTGTG 61.321 63.158 0.00 0.00 40.82 3.66
470 471 2.031163 GGCTGTTGCGGTCTCTGT 59.969 61.111 0.00 0.00 40.82 3.41
471 472 3.114616 CGGCTGTTGCGGTCTCTG 61.115 66.667 0.00 0.00 40.82 3.35
472 473 3.303135 TCGGCTGTTGCGGTCTCT 61.303 61.111 0.00 0.00 40.82 3.10
473 474 3.112709 GTCGGCTGTTGCGGTCTC 61.113 66.667 0.00 0.00 40.82 3.36
474 475 4.681978 GGTCGGCTGTTGCGGTCT 62.682 66.667 0.00 0.00 40.82 3.85
475 476 4.980805 TGGTCGGCTGTTGCGGTC 62.981 66.667 0.00 0.00 40.82 4.79
511 512 0.322322 TGTATGTTCCGGTGGTGTCC 59.678 55.000 0.00 0.00 0.00 4.02
512 513 2.073816 CTTGTATGTTCCGGTGGTGTC 58.926 52.381 0.00 0.00 0.00 3.67
513 514 1.271163 CCTTGTATGTTCCGGTGGTGT 60.271 52.381 0.00 0.00 0.00 4.16
514 515 1.448985 CCTTGTATGTTCCGGTGGTG 58.551 55.000 0.00 0.00 0.00 4.17
515 516 0.322187 GCCTTGTATGTTCCGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
516 517 1.029947 GGCCTTGTATGTTCCGGTGG 61.030 60.000 0.00 0.00 0.00 4.61
517 518 1.366111 CGGCCTTGTATGTTCCGGTG 61.366 60.000 0.00 0.00 36.73 4.94
518 519 1.078708 CGGCCTTGTATGTTCCGGT 60.079 57.895 0.00 0.00 36.73 5.28
519 520 2.469516 GCGGCCTTGTATGTTCCGG 61.470 63.158 0.00 0.00 40.37 5.14
520 521 2.469516 GGCGGCCTTGTATGTTCCG 61.470 63.158 12.87 0.00 42.68 4.30
521 522 1.377987 TGGCGGCCTTGTATGTTCC 60.378 57.895 21.46 0.00 0.00 3.62
522 523 1.654023 GGTGGCGGCCTTGTATGTTC 61.654 60.000 21.46 0.00 0.00 3.18
523 524 1.677633 GGTGGCGGCCTTGTATGTT 60.678 57.895 21.46 0.00 0.00 2.71
524 525 2.045340 GGTGGCGGCCTTGTATGT 60.045 61.111 21.46 0.00 0.00 2.29
525 526 2.828549 GGGTGGCGGCCTTGTATG 60.829 66.667 21.46 0.00 0.00 2.39
526 527 3.334891 TGGGTGGCGGCCTTGTAT 61.335 61.111 21.46 0.00 0.00 2.29
527 528 4.028490 CTGGGTGGCGGCCTTGTA 62.028 66.667 21.46 3.59 0.00 2.41
534 535 4.864334 GGATCTGCTGGGTGGCGG 62.864 72.222 0.00 0.00 39.72 6.13
537 538 4.100084 TGCGGATCTGCTGGGTGG 62.100 66.667 26.32 0.00 35.36 4.61
538 539 2.821366 GTGCGGATCTGCTGGGTG 60.821 66.667 26.32 0.00 35.36 4.61
539 540 4.101448 GGTGCGGATCTGCTGGGT 62.101 66.667 26.32 0.00 35.36 4.51
584 585 3.660111 GTGCACAGGCGTGGTTCC 61.660 66.667 13.17 0.00 43.81 3.62
585 586 3.660111 GGTGCACAGGCGTGGTTC 61.660 66.667 20.43 0.00 43.81 3.62
586 587 4.497984 TGGTGCACAGGCGTGGTT 62.498 61.111 20.43 0.00 43.81 3.67
622 623 2.044451 TAATGCGGTTGGCCCAGG 60.044 61.111 0.00 0.00 42.61 4.45
623 624 2.760159 CGTAATGCGGTTGGCCCAG 61.760 63.158 0.00 0.00 42.61 4.45
624 625 2.748251 CGTAATGCGGTTGGCCCA 60.748 61.111 0.00 0.00 42.61 5.36
625 626 4.187810 GCGTAATGCGGTTGGCCC 62.188 66.667 0.00 0.00 42.61 5.80
644 645 2.583593 GGATGCCAGACGCTCGAC 60.584 66.667 0.00 0.00 38.78 4.20
645 646 4.193334 CGGATGCCAGACGCTCGA 62.193 66.667 0.00 0.00 38.78 4.04
671 672 4.487412 GGTGGTCGCGGTAGGACG 62.487 72.222 6.13 0.00 35.24 4.79
672 673 3.352338 CTGGTGGTCGCGGTAGGAC 62.352 68.421 6.13 0.00 0.00 3.85
673 674 3.066190 CTGGTGGTCGCGGTAGGA 61.066 66.667 6.13 0.00 0.00 2.94
674 675 4.814294 GCTGGTGGTCGCGGTAGG 62.814 72.222 6.13 0.00 0.00 3.18
741 742 4.803426 CACGAGCTGGAGCCGGTC 62.803 72.222 1.90 0.00 43.38 4.79
763 764 4.821589 GACAAGGAGAGGCGCGGG 62.822 72.222 8.83 0.00 0.00 6.13
765 766 4.116328 TCGACAAGGAGAGGCGCG 62.116 66.667 0.00 0.00 0.00 6.86
766 767 2.202676 CTCGACAAGGAGAGGCGC 60.203 66.667 0.00 0.00 36.08 6.53
767 768 2.202676 GCTCGACAAGGAGAGGCG 60.203 66.667 0.00 0.00 36.08 5.52
768 769 1.153667 CTGCTCGACAAGGAGAGGC 60.154 63.158 0.00 0.00 45.87 4.70
769 770 1.153667 GCTGCTCGACAAGGAGAGG 60.154 63.158 0.00 0.00 45.87 3.69
770 771 1.153667 GGCTGCTCGACAAGGAGAG 60.154 63.158 0.00 0.00 45.87 3.20
771 772 2.650116 GGGCTGCTCGACAAGGAGA 61.650 63.158 0.00 0.00 45.87 3.71
772 773 2.125350 GGGCTGCTCGACAAGGAG 60.125 66.667 0.00 0.00 45.76 3.69
773 774 3.706373 GGGGCTGCTCGACAAGGA 61.706 66.667 0.00 0.00 0.00 3.36
798 799 3.625897 TGACTGCCCGTGTCCAGG 61.626 66.667 0.00 0.00 33.83 4.45
799 800 1.532604 TAGTGACTGCCCGTGTCCAG 61.533 60.000 0.00 0.00 33.83 3.86
800 801 0.902984 ATAGTGACTGCCCGTGTCCA 60.903 55.000 0.00 0.00 33.83 4.02
801 802 1.067212 CTATAGTGACTGCCCGTGTCC 59.933 57.143 0.00 0.00 33.83 4.02
802 803 1.536284 GCTATAGTGACTGCCCGTGTC 60.536 57.143 0.84 0.00 35.21 3.67
803 804 0.460311 GCTATAGTGACTGCCCGTGT 59.540 55.000 0.84 0.00 0.00 4.49
804 805 0.459899 TGCTATAGTGACTGCCCGTG 59.540 55.000 0.84 0.00 0.00 4.94
805 806 0.747255 CTGCTATAGTGACTGCCCGT 59.253 55.000 0.84 0.00 0.00 5.28
806 807 0.032678 CCTGCTATAGTGACTGCCCG 59.967 60.000 0.84 0.00 0.00 6.13
807 808 0.250081 GCCTGCTATAGTGACTGCCC 60.250 60.000 0.84 0.00 0.00 5.36
808 809 0.465705 TGCCTGCTATAGTGACTGCC 59.534 55.000 0.84 0.00 0.00 4.85
809 810 1.410517 TCTGCCTGCTATAGTGACTGC 59.589 52.381 0.84 0.00 0.00 4.40
810 811 4.333913 AATCTGCCTGCTATAGTGACTG 57.666 45.455 0.84 0.00 0.00 3.51
811 812 5.104776 TCAAAATCTGCCTGCTATAGTGACT 60.105 40.000 0.84 0.00 0.00 3.41
812 813 5.118990 TCAAAATCTGCCTGCTATAGTGAC 58.881 41.667 0.84 0.00 0.00 3.67
813 814 5.104776 ACTCAAAATCTGCCTGCTATAGTGA 60.105 40.000 0.84 0.00 0.00 3.41
814 815 5.121811 ACTCAAAATCTGCCTGCTATAGTG 58.878 41.667 0.84 0.00 0.00 2.74
815 816 5.363939 GACTCAAAATCTGCCTGCTATAGT 58.636 41.667 0.84 0.00 0.00 2.12
850 851 4.848357 ACTCGGACCATGAATCTGATTTT 58.152 39.130 4.11 0.00 31.06 1.82
886 887 2.159558 GCTACTTTTTGTAAGCGGAGGC 60.160 50.000 0.00 0.00 40.37 4.70
915 918 1.795286 CTTGACACGAAGGTCTGAAGC 59.205 52.381 0.00 0.00 38.61 3.86
920 923 1.868519 GCGAACTTGACACGAAGGTCT 60.869 52.381 0.00 0.00 37.50 3.85
960 963 2.625790 TGCGGGTAATTTGCTCTGTTTT 59.374 40.909 0.00 0.00 0.00 2.43
975 978 0.321653 GACAAGAGGTTGATGCGGGT 60.322 55.000 0.00 0.00 37.10 5.28
995 1061 5.495926 AACTGTGGAGATATCCATGGATC 57.504 43.478 30.61 18.43 42.41 3.36
1303 1372 1.444553 CGAGGGTGACGCAGAAGAC 60.445 63.158 1.61 0.00 0.00 3.01
1353 1422 2.123425 CCTCCGGGGATTCCTCGA 60.123 66.667 26.53 11.24 37.23 4.04
1409 1478 0.107945 GCTCATGAAGGCTTCGACCT 60.108 55.000 21.42 4.39 43.91 3.85
1451 1520 0.179119 GGCATAGTGCTCGTTACCGT 60.179 55.000 1.64 0.00 44.28 4.83
1470 1539 1.026718 GGTGATGAAGGAAGGCCACG 61.027 60.000 5.01 0.00 36.29 4.94
1482 1551 3.452264 CACTAGATTCCCACTGGTGATGA 59.548 47.826 0.00 0.00 45.26 2.92
1713 1782 4.037565 GGTATGTATGTGATGACAGGACGA 59.962 45.833 0.00 0.00 34.87 4.20
1822 1891 6.834876 TCTCGACAAACTTGATCAAATCATG 58.165 36.000 9.88 8.75 39.39 3.07
1828 1897 9.825972 GAATTTTATCTCGACAAACTTGATCAA 57.174 29.630 8.12 8.12 0.00 2.57
1995 2064 3.012518 CTCATCATTCAAAAGCTCGGGT 58.987 45.455 0.00 0.00 0.00 5.28
2127 2196 2.519377 TGTCAACAACGACTACCCAG 57.481 50.000 0.00 0.00 36.82 4.45
2220 2289 1.372501 AGTACTTGGGGAAGGTGCAT 58.627 50.000 0.00 0.00 0.00 3.96
2281 2350 5.220381 GCTAAATCACATGGCATGATGAAG 58.780 41.667 32.74 22.71 36.89 3.02
2282 2351 4.645588 TGCTAAATCACATGGCATGATGAA 59.354 37.500 32.74 14.93 36.89 2.57
2358 2427 7.933577 ACACAAGAACTGATAGACAATCAAGAA 59.066 33.333 0.00 0.00 44.05 2.52
2371 2468 2.033801 GCAAGCACACACAAGAACTGAT 59.966 45.455 0.00 0.00 0.00 2.90
2395 2492 8.590204 TGTTAGTACTGAAACATACATTCTCCA 58.410 33.333 5.39 0.00 30.88 3.86
2422 2519 4.843728 ACGGATGGAGTAAATGTCAACAT 58.156 39.130 0.00 0.00 38.41 2.71
2632 2734 3.554934 TCTCACTGCACCAAAATTCTGT 58.445 40.909 0.00 0.00 0.00 3.41
2706 2808 7.378728 CCTGTTAATTTCGAAAAGACCAAACTC 59.621 37.037 15.66 0.00 0.00 3.01
2763 2865 8.370940 ACACATGGGTCATCATAACTAAGATAG 58.629 37.037 0.00 0.00 0.00 2.08
2826 2930 9.743057 CTGAGTAAATAACAATGGACAAAACAA 57.257 29.630 0.00 0.00 0.00 2.83
2850 2954 7.281774 TCGACCAGAGGTATAAAACTAGTACTG 59.718 40.741 5.39 0.00 35.25 2.74
2937 3041 8.469309 AAGGGACATTCACATATAAAAGATGG 57.531 34.615 0.00 0.00 0.00 3.51
3064 3170 1.204467 CTCCTCTTCCTCTGCACACTC 59.796 57.143 0.00 0.00 0.00 3.51
3087 3193 0.321122 CCGTGCCTGCTTCTTCTTCT 60.321 55.000 0.00 0.00 0.00 2.85
3157 3266 8.511321 ACTTTTACAAAGATCGCAATCAATACA 58.489 29.630 3.24 0.00 34.07 2.29
3235 3344 3.855524 GCTTTTGCTTGCCGCTACTTTTA 60.856 43.478 0.00 0.00 43.35 1.52
3284 3393 5.875224 TCCAACACTCATTCCAGAACATTA 58.125 37.500 0.00 0.00 0.00 1.90
3297 3406 2.705658 ACTGAACCTCATCCAACACTCA 59.294 45.455 0.00 0.00 0.00 3.41
3347 3456 3.120086 AACTGCAGCACCGTTCCCT 62.120 57.895 15.27 0.00 0.00 4.20
3462 3571 3.732219 CAGACACATGTTGCATGTTTGTC 59.268 43.478 17.61 17.61 0.00 3.18
3494 3603 3.914435 ACCACTTACCTTACCACCAGAAT 59.086 43.478 0.00 0.00 0.00 2.40
3515 3624 2.423538 ACTGGACTGCAACAACAAAGAC 59.576 45.455 0.00 0.00 0.00 3.01
3517 3626 2.423185 TCACTGGACTGCAACAACAAAG 59.577 45.455 0.00 0.00 0.00 2.77
3579 3688 1.828595 TGTCCTAGGAACGCATAAGCA 59.171 47.619 14.65 0.39 42.27 3.91
3584 3693 0.252197 GGGTTGTCCTAGGAACGCAT 59.748 55.000 14.65 0.00 35.63 4.73
3597 3706 2.005370 TACTCTCCGAACTGGGTTGT 57.995 50.000 0.00 0.00 38.76 3.32
3642 3751 5.530171 GTGATAGTTCTGTAGGACGGATACA 59.470 44.000 0.00 0.00 32.78 2.29
3643 3752 5.530171 TGTGATAGTTCTGTAGGACGGATAC 59.470 44.000 0.00 0.00 32.78 2.24
3663 3772 7.659390 AGTTTTTGGTCAGTTTTCAAAATGTGA 59.341 29.630 0.00 0.00 39.24 3.58
3779 3888 0.179045 AGAGTTGACTTTGCTGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
3823 3932 0.988832 GGGTCCCACCTGTCATAACA 59.011 55.000 1.78 0.00 38.64 2.41
3838 3947 4.526970 AGGTTGATGATAACATGTGGGTC 58.473 43.478 0.00 0.00 36.82 4.46
3846 3955 7.020827 AGGAAGAAGAAGGTTGATGATAACA 57.979 36.000 0.00 0.00 32.22 2.41
3849 3958 5.131142 GGGAGGAAGAAGAAGGTTGATGATA 59.869 44.000 0.00 0.00 0.00 2.15
3949 4251 3.478274 CTGCCTCCTCCTCCCAGC 61.478 72.222 0.00 0.00 0.00 4.85
3980 4282 1.152525 GATCCCTCCTAGACCCGCA 60.153 63.158 0.00 0.00 0.00 5.69
3989 4291 2.769621 TGCCGCATGATCCCTCCT 60.770 61.111 0.00 0.00 0.00 3.69
3996 4298 2.203167 CTGCCTCTGCCGCATGAT 60.203 61.111 0.00 0.00 35.25 2.45
4171 4474 4.537433 CTGGCCTCTGCTACCCGC 62.537 72.222 3.32 0.00 37.74 6.13
4172 4475 4.537433 GCTGGCCTCTGCTACCCG 62.537 72.222 3.32 0.00 37.74 5.28
4173 4476 3.397613 CTGCTGGCCTCTGCTACCC 62.398 68.421 3.32 0.00 38.45 3.69
4174 4477 2.188994 CTGCTGGCCTCTGCTACC 59.811 66.667 3.32 0.00 38.45 3.18
4175 4478 2.513435 GCTGCTGGCCTCTGCTAC 60.513 66.667 3.32 0.00 38.45 3.58
4176 4479 4.152964 CGCTGCTGGCCTCTGCTA 62.153 66.667 19.20 6.81 38.45 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.