>input_sequence_36177
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-------------------------ATGGATATCTCCACAGTTTCCATCCGTCCCTCCACCATAATCGGCCCACGC---G
CCGCCGACTCCACCTCCCTGCGCCCCGGCTATCCCGATTGGGTCTTACTCAACAAGACGGCGCGCATCTCCGACCAACGG
AACGCGACCACTGCCTTGTGCCGCACGAGGGAGGGCCAAGCCGTCGCGGTGTCCTTCTGGCTCGTCGACCCGCCCGCCGT
CTCCTACTTCTCCGTCCACTGCCCTGGTCTGGAAGACGACGATTTCTCCGACACCCCGCCCTTCCTTCTTTGCGCCGAGG
GAGCCTTCGTCGTCTTCTGCGTCACCCTCGATGACTCCGTTCACCACTTCGTCTACTCCGCTCGAGGAATCCCCGGAGGG
AAGCCGTCGCTGCACCGTCTCCCGGACCCGAAACCCAAGGTCGAAGCCTTCATGAGCCAGCAATTTGGCCTCTTGCCTTA
CGGTAACGAGCACTATGCCGTGGCCTTCCTTCATCACCAGTGGGAATCTAGTGACCAGGCCTGGCATTATTATGCCTACA
TCTTCTCCTCCGAGACAAAGACATGGAAGAGAAGTAAGGAGGCCTTGCTCTACTTATCCAAGTCTGATCAGTTATTGTTT
GATAGACATGCCAGCTCCAAGCAGATCACTGTCGGGGAAAGCTCATTGGGATGGGTTGATCTCTTGCGTGGTATTCTTCT
TCTTAGCAACCTGTTCGACGATCGTCCTGTCATCACATACATACCGTTACCTAAAGTAAAGGCTTGCATCACCGATAGGA
ATGGTTATCCTTCCTACGCGCCGGAATTCTTCTGCGATATAACATGCTGCCATGATTTGATCAAGTTTGTCGAGATAAAA
TTCGATGAACCTAATTGCAGGGCCAATGGTAAAGCATGGAAGGCCACCACATGGAACAGGAAGGTCTCTTGGGATGATTG
GGGCAGGTGCTCCACAGCTGATGTTGCTGAAATCTCGGTTGACCCAAGTTATTTGTCATTGTTACCCGAGCTTTTGAATG
ATGAGACCAAACAGCTGGAAATTAAGAACCTGTATTTCCTTAACCCCACCCTGAGTGTGGACGACGACGATCTCCTTTAC
ATGATGGGCAAGGTGAACGAGGAAGACGACACAGCCTGGGTAGTCGTTGTTGACATGAAACGTGCGGCTCTGGAGGCATT
GGTCCCGGTTTCTACCCAACCTTCATACACCGTTACGATGTACTGTCCATGCACCTTCCCCAAGTACTACCTCAATAGAA
CACCAGGTATGGTAACTATATTCTTTTTTCTTCATCATGCCATGTGATTTAGCAGCAACATAGGACTGTATTTTTTGCAC
TCTTGTTTCAAACCGGAACTTTTGTATTCTTGA----------------------------TTGTCTATCAGTTCTTGTG
TGTGCTTGCTTTGGAGAATGTATGTTTCAGTACTAACAATGTTGACATTTACTCCATCCGTTTTTATTTACTCTGCATAT
TAGTTTTGACCTAAGTCAAACTTTATAAATTTACAA-AGAAAGGGTTTCAAATATATATGCAATATATGTAATTTTCTCT
TATTTCTTTATATCGCAAACAGCATGATATAGGACCATGGAATTTTATTATATA--GCATAGATTTGTAGTAGAATGTT-
-AATTAACAAAAAACAGAATTTTGGTGCAGTGAGAATAAACATACCATTTTGAATGTACATACACTCATGCTTAGGAAAT
GCTTCACGAGTTTGGTCTTTTCGAAATTAACAGGTTTGGGTGTCTGAGACGGGAGGCAAGTTGCCTATCTTAGTTATGAT
GACCCATGTGTCATTTATAT--GTACATTACCTATTTACCTGTAGCCATTTGTTTTGTCCATTGTTATTTACTCAGTACT
AGTTTTATACCTCTGGTCGAGGCCCTCTCCAATAAGAATTAAGAAGTGCTCCATTGCGAAGTTTATGTGCATTTATTTCC
CCA--TCTTTTATATGTGAATGTCCCTTTGTTAAATAATACCTTTTTGAACAGACATTGGCAGTCCAGTTGAGAAGGATA
AATCCGATAAATGGCCGCAAGGGAGACCCAGCCCCAATAACTCTGGAGGGAGTGTGCAGAGGAAGAGGAGGAAGAAGAAG
AAGCAGGC---ACGGGCTGCGGATTGCTGGTTGGAACAGCCCTATTTGCTGTATTTTGTTGGCTGTGTATTGATTGCGAT
CTTTGTAAAAGTGTTCTTTCATCTGTGTGGAATGTAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>chr3D_1_TraesCS3D01G058200
GGGGAGAGGGGGTGGGGGCGTTGGAAGCGAAGGGACTGCTAGTGTCCCCAACAGGCGGGCCACGTGAGGACAAGTGTGTG
CGGCGAGCCCGTCTGCGCGATGTCCGTTTCACCCCAAACTCGGCGCAAGTTTGGGCCAGGGATGGGTCGAAAACGGACGG
AATCCGGACATTTGTCCGTTTAGGGCCGCGCGTTGGGCCGCGTTATTCGTCCGTTCTACACCAAACAGACGCATTCAGAT
AAGATGGAGTCGCGCCGTGGAGTTGGCCTAACGGGCTGGACGGCGGCCTTGCTCCAAGGGGCCGGACGTGGACACGCTTC
AAGGAGGAAGCCACCAAACATCCACGGTATTACCTCCACCATCCCGGCAGCGAGATCTAGCCGCAGGCCCGACAAAGCCC
AGATCGGGCTCCGTCACTGCAAGCCACCGCGTCGCCAACTCTCCTCGCGCAGATCAGCCCTTGGCACGGCACAGAGACCG
CAACAGCCGACCACCCGCCCACAGGGCCGCCGGACACCACCGGAACATACAAGGCCGCCACCCAGCAGATCCGCACCGGG
GGCGCCGTCCGCGCGCATCCCTGCGGAACCACGCCTGTGCACCACGCACACGCGCTGCCCAGCCTGGGCCAACCGCATTA
CGCCGTCGAGCGTCTGGCATCCGGCCGCCCGCGTCCTACCGCGACCACCAGCGCGCCAGCACGGCGCCCAGGCGCGCATC
GCCTCGGCAGCCCGCCGCGCGGACCGGCTCCAGCTCGTGCCGCCCCGCGCCTCTCCTTGTCGAGCAGCCCCGCGCAGCCC
TGGACACGGGCAGTCACTATAGCAGGCAGATTTTGAGTCCGAGTCGGATGAAAATCAGATTCATGGTCCGAGTAGGTGTC
TCCCCCGCCTCCGC--TTACAAAAAGTAGCGCCCACCGCTTCAGACCTTCGTGTCAAGTTCGCCCCCGCAGACGCTAGAA
GGAAAACAGAGCAAATTACCCGCATCAA----------------------------------------------------
-----------CCTCTTGTCGATCCATGGATATCTCCACAGTTTCCATCCGTCCCTCCACCATAATCGGCCCACGC---G
CCGCCGACTCCACCTCCCTGCGCCCCGGCTATCCCGATTGGGTCTTACTCAACAAGACGGCGCGCATCTCCGACCAACGG
AACGCGACCACTGCCTTGTGCCGCACGAGGGAGGGCCAAGCCGTCGCGGTGTCCTTCTGGCTCGTCGACCCGCCCGCCGT
CTCCTACTTCTCCGTCCACTGCCCTGGTCTGGAAGACGACGATTTCTCCGACACCCCGCCCTTCCTTCTTTGCGCCGAGG
GAGCCTTCGTCGTCTTCTGCGTCACCCTCGATGACTCCGTTCACCACTTCGTCTACTCCGCTCGAGGAATCCCCGGAGGG
AAGCCGTCGCTGCACCGTCTCCCGGACCCGAAACCCAAGGTCGAAGCCTTCATGAGCCAGCAATTTGGCCTCTTGCCTTA
CGGTAACGAGCACTATGCCGTGGCCTTCCTTCATCACCAGTGGGAATCTAGTGACCAGGCCTGGCATTATTATGCCTACA
TCTTCTCCTCCGAGACAAAGACATGGAAGAGAAGTAAGGAGGCCTTGCTCTACTTATCCAAGTCTGATCAGTTATTGTTT
GATAGACATGCCAGCTCCAAGCAGATCACTGTCGGGGAAAGCTCATTGGGATGGGTTGATCTCTTGCGTGGTATTCTTCT
TCTTAGCAACCTGTTCGACGATCGTCCTGTCATCACATACATACCGTTACCTAAAGTAAAGGCTTGCATCACCGATAGGA
ATGGTTATCCTTCCTACGCGCCGGAATTCTTCTGCGATATAACATGCTGCCATGATTTGATCAAGTTTGTCGAGATAAAA
TTCGATGAACCTAATTGCAGGGCCAATGGTAAAGCATGGAAGGCCACCACATGGAACAGGAAGGTCTCTTGGGATGATTG
GGGCAGGTGCTCCACAGCTGATGTTGCTGAAATCTCGGTTGACCCAAGTTATTTGTCATTGTTACCCGAGCTTTTGAATG
ATGAGACCAAACAGCTGGAAATTAAGAACCTGTATTTCCTTAACCCCACCCTGAGTGTGGACGACGACGATCTCCTTTAC
ATGATGGGCAAGGTGAACGAGGAAGACGACACAGCCTGGGTAGTCGTTGTTGACATGAAACGTGCGGCTCTGGAGGCATT
GGTCCCGGTTTCTACCCAACCTTCATACACCGTTACGATGTACTGTCCATGCACCTTCCCCAAGTACTACCTCAATAGAA
CACCAGGTATGGTAACTATATTCTTTTTTCTTCATCATGCCATGTGATTTAGCAGCAACATAGGACTGTATTTTTTGCAC
TCTTGTTTCAAACCGGAACTTTTGTATTCTTGA----------------------------TTGTCTATCAGTTCTTGTG
TGTGCTTGCTTTGGAGAATGTATGTTTCAGTACTAACAATGTTGACATTTACTCCATCCGTTTTTATTTACTCTGCATAT
TAGTTTTGACCTAAGTCAAACTTTATAAATTTACAA-AGAAAGGGTTTCAAATATATATGCAATATATGTAATTTTCTCT
TATTTCTTTATATCGCAAACAGCATGATATAGGACCATGGAATTTTATTATATA--GCATAGATTTGTAGTAGAATGTT-
-AATTAACAAAAAACAGAATTTTGGTGCAGTGAGAATAAACATACCATTTTGAATGTACATACACTCATGCTTAGGAAAT
GCTTCACGAGTTTGGTCTTTTCGAAATTAACAGGTTTGGGTGTCTGAGACGGGAGGCAAGTTGCCTATCTTAGTTATGAT
GACCCATGTGTCATTTATAT--GTACATTACCTATTTACCTGTAGCCATTTGTTTTGTCCATTGTTATTTACTCAGTACT
AGTTTTATACCTCTGGTCGAGGCCCTCTCCAATAAGAATTAAGAAGTGCTCCATTGCGAAGTTTATGTGCATTTATTTCC
CCA--TCTTTTATATGTGAATGTCCCTTTGTTAAATAATACCTTTTTGAACAGACATTGGCAGTCCAGTTGAGAAGGATA
AATCCGATAAATGGCCGCAAGGGAGACCCAGCCCCAATAACTCTGGAGGGAGTGTGCAGAGGAAGAGGAGGAAGAAGAAG
AAGCAGGC---ACGGGCTGCGGATTGCTGGTTGGAACAGCCCTATTTGCTGTATTTTGTTGGCTGTGTATTGATTGCGAT
CTTTGTAAAAGTGTTCTTTCATCTGTGTGGAATGTAATAGTTAGTATGTTACCCTCTTATCTGTAAAAGTAGCGGCAAGC
AAAAGCATATTCTAGCAGCTGCTCTGCATGTATAATGTTCTGGAATGAGTGTTGGATGAGGTTCAGTTTAAGCTGTGTTT
AACCTGTTCTGGAACAGGGAACGGTGCTGCAGTTGATATGTTGCTTCTAGTTCTTAAGCAAGTTGGAATAAAATCATTTG
AGCTTCATAGGTTTTCCCCATCAGTATGTTGCTTCTATCTTGTACCAATGGACAAACATGCAACATGTGTCTGCTTATTT
TTATTCTGGTGGTAAGGTAAGTGGTCTTTGTTGTTGCAGTCCAGTGAAGCTCCTTTTAATTGCGACAGATTGTCGAACAA
ACGCACATGCTTATGCGTTCCTAGGACAACCCAGTTCGGAGAGTAATTGATAAAAAACTACCACATTTCATGTATCCGTC
CTACAGAACTATCACATTTTGAAAACTGACCAAAAACTCCAAATTAGTGCTAATTTCGTGACAAAAAACTACCAGGTCGA
GTTGATGACCGTTTTTATGATTTTAAACCTGTTTATGACATGTGGGAACGGCAGCAAAGTCAACTCTGTTTATTTTGACC
GTCAAGTTAACTGTTATGACAGGTGGGACCCACATGTTATCATCAACCTTCTTCTTCCTCCCCTCCTCTCTCT--TTGGC
ATTTCAACAAACACCTCTTGTGCATGAGACGGAAACA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGGCTGCAGGGG
GCGGTGCCGCGCTGGGAGGAGGAGGCAGGGCGAGCCGTGAGTGCGGGTCTAGGAGGGATCATGCGGCAGAGGCAGAGGCG
GGAGCCGAGCAGCGGCTGGGCTGCGGCGAGGCATGCAGGCCGGCGGGCAGCGCGAGCGGACGGCACGGGCGGTCTGCGGC
GGCGGGGCCGGCAAGCCGTAGCGGCAGCAAGCCAGCAGGGG-CGCGGGCAGGAGAGGCCAGGGGCTCGCCGGCGCGGGTA
GCAGAGGCCAGCAGCGGGGACCACCGCGGTA
>chr3A_817
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------CTATAGCAGGCAGATTTTGAGTCCGAGTCGGATGCAAATCAGATTCATGGTCCGAGTAGGCGTC
TCCCCC-CCTCCGC--TTACAAAAAGTAGCGCCCACCCCTTCCGACCTTCGTGTCAAGTTCGCCCC------CGCTAGAA
GGGAAACAGAGCAAATTCGCCGCATCAATCGCTCCTCGTAGTGCAAATCTAGGCCGCGGCCAAAAGCAAAAATCTGCCGA
ATTCCCCAAATCCTCTTGTCAATCCATGGATATCTCCCCAGTTTCCATCCGTCACTCCACCATAATCGGCCCACGT---G
CCGCCGACTCCACCTCCCTGCGCCCCGGCTATCCCGATTGGGTCTTACTCAACAAGACAGCGCGCATCTCCGACCACCGG
AACGCGACCACCGCCTTGTGCCGCACGAGGGAGGGCCAAGCCGTCGCGGTGTCCTTCTGGCTCGTCGACCCGCCCGCCGT
CTCCTACTTCTCCGTCCACTGCCCTGGTCTGGAAGACGACGATTTCTCCGACACCCCGCCCTTCCTTCTCTGCGCCGAGG
GAGCCTTCGTCCTCTTCTGCGTCACCCTCGATGACTCCGTCCACCACTTCGTCTACTCCGCCCGAGGAATCCCCGGCGGG
AGGCCGTCGCTGCACCGTCTCCCGGCCCCGAAACCCACGGTCGAAGCCTTCATGAGCCAGCAATTTGGCCTCTTGCCTTG
CGGTAACGAGCACTATGTTGTTGCCTTTCTCCATCATCAGTGGGAATCTAGTGACCAGGCTTGGCATTATTATGCGTACA
TCTTCTCCTGCGAGACAAAGACATGGAAGAGAAGTAAGGAGGCCTTGCTCTGCTTATCCAAGTCTGATCAGTTATTGTTT
GATAGACATGCCAGCTCCAAGCAGATCACTGTCGGGGAAAGCTCATTGGGATGGGTTGATCTCTTGCGTGGTATTCTTCT
TCTTAGCAACCTGTTCGACGAGCGTCCTGTCATCACATACATACCGTTACCTAAAGTAAAAGCTTGCATCACCGATAGGA
ATGGTTATCCTTCCTACGCGCCGGAATTCTTCTGCGATATAACATGCTGCGATGATCTGATCAAGTTTGTCGACATAAAA
TTCGATGAACCTAATTGCAGGGCCAATGGTCAAGCATGGAAGGCCACCACATGGAACAGGAAGGTCTCTTGGGATGATTG
GGGCAGGTGCTCCACAACTGATGTTGCTGAAATCTCGGTTGACCCAAGTTATTTGTCATTGTTGCCCGAGCTTTTGAATG
ATGAGACCAAACAGCTGGAAATTAAGAACCTGTATTTCCTTAACCCCACCCTGAGTGTGGACGACGACGATCTCCTTTAC
ATGATGGGCAAGGTGAACGAGGAAGACGACACAGCTTGGGTAGTCGTTGTTGACATGAAACGTGCGGCTCTGGAGGCATT
GGTCCCGGTTTCTACCCAACCGTCATACGCCGTTACGATGTACTGTCCGTGCACCTTCCCCAAGTACTACCTCAATATAA
CACCAGGTATGGTAACTATATTCTTTTTT--TCATCGTGCCATGTGATTTAGCAGCAACATAGGACTGTATTTTTTGCAC
TCTTGTTTCAAACCGGAACTTTTGTACTCTTGA----------------------------TTCTCTGTCAGTTCTTGTG
TGTGCTTGCTTAGGAGAATGTATGTATCAGTACTAACACTGTTGAAATTTACTCCATCAGTTTTTATTTACTCCACATAT
TAGCTTTGACCTAAGTCAAACTTTATAAGTTTACAA-AGAAAGTGTTTCAAATATATATGCAATATATGTAATTTTCTCT
TATTTCTTTATATCGCAAACAACATGATATAGGACCATGGAATTTTATTATATA--ACATAGATTTGTAGTAGAATGTT-
-CATTAACAAAAATCAGAATTTTGGTGCAGTGAGAATAAACATACCATTTTGAATGTACATACACTCATGCTTAGGAAAT
GCTTCACTAGTTTGGTCTTTTCGAAATTAACAGGTTTGGGTGTCTGAGACGGGAGGCAAGTTGCATATCTTAGTTATGAT
GACCCATGTGTCATTTATAT--GTACATTACCTATTTACCTGTATCCATCTGTTTTGTCCATTATTATTTACTTAGTACT
AGTTTTATACCTCTGGTTGAGGCCCTCTCCAATAAGAATTAAGAAGTGCTCCATTGCCAAGTGTATGTGCATTTATTTCC
-CA--TCTTTTATATGTGAATGTCCCTTTGTTAAATAATACCTTTTTGAACAGACATTGGCAGTCCAGTTGAGAAGGATA
AATCCGATAAATGGCCGCAAGGGAGACCCAGCCCCAATAACTCTGGAGGAAGTGTGCAGATGAAGAGGAGGAGGAAGAAG
AAGAAGCAGGTACAGGCTGCGGATTGCTGGTTGGAACAACCCTATTTGCTGTATTTTGTTGGCTGCGTATTGATTGCGAT
CTTTGTAAAAGTGTTCTTTCATCTGACTGGAATGTAATAGTCAGTATGTT------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3B_818
--------------------------------------------------------------------------------
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-----------------TATAGCAGGCAGATTTTGAGTCCGAGTCGGATGCAAATCAGATTCATGGTCCGAGTAGGTGTC
TCCCCC-CCCCTCGGGTTACAAAAAGTAGCGCCCACCCCTCCCGACCTTCGTGTCAAGTTGGCCCCCGCAGACGCTAGAA
GGGAAACAGAGCAAATTCCCCGCATCAATCGCTCCTCGTACTGCAAATCTAGGCCGCG----------------------
---------------------ATCCATGGATATCTCCACAGTTTCTGTCCGTCCCTCCACCATAATCGGCCCACGCGCCG
CCGCCGACTGCACCTCCCTGCGCCCCGGCTATCCCGACTGGGTCTTACTCAACAAGACGGCGCGCATCTCCGACCAACGG
AACGCGACCACCGCCTTGTGCCGCACGAGGGAGGGCCAAGCCGTCGCGGTGTCCTTCTGGCTCGTCGACCCGCCCGCCGT
CTCCTACTTCTCCGTCCACTGCCCTGGTCTGGAAGACGACGATTTCTCCGACACCCCGCCCTTCCTTCTCTGCGCCGAGG
GAGCCTTCGTCCTCTTCTGCGTCACCCTCGATGACTCCGTCTACCACTTCGTCTACTCCGCCCGAGGAATCCCCGGCGGG
AGGCCGTCGCTGCACCGTCTCCCGGACCCGAAACCCAGGGTCGAAGCCTTCATGAGCCAGCAATTTGGCCTCTTGCCTTG
CGGTAACGAGCACTATGCTGTGGCATTCCTCCATCACCAGTGGGAATCTAGTGACCAGGCTTGGCATTATTATGCCTACA
TCTTCTCCTCGGAGACAAAGGCATGGAAGAGAAGTAAGGAGGCCTTGCTCTACATATCCAAGTCTGATCAGTTACTGTTT
GATAGACATGCCAGCTCCAAGCAGATCACTGTCAGGGAAAGCGCATTGGGATGGGTTGATCTCTTGCGTGGTATTCTTCT
TCTTAGCAACCTGTTCGACGAGCGTCCTGTCATCACATACATACCGTTACCTAAATTAAAGGCTTGCATCACCGATAGGA
ATGGTTATCCTTCCTACGCGCCGGAATTCTTCTGCGATATAACATGCTGCGATGATCTGATCAAGTTTGTCGAGATAAAA
TTCGATGAACCGAATTGCAGGGCCAATGGTAAAGCATGGAAGGCCACCACATGGAACAGGAAGGTCTCTTGGGATGATTG
GGGCAGGTGCTCCACAGTTGATGTTGCTGAAATCTCGGTTGACCCAAGTTATTTGTCATTGTTGCCTGAGCTTTTGAATG
ATGAAACCAAACAGCTGGAAATTAAGAACCTGTATTTCCTTAACCCCACCCTGAGTGTGGACGACGACGATCTCCTTTAC
ATGATGGGCAAGGTGAACGAGGAAGACGACACAGCTTGGGTAGTCGTTGTTGACATGAAACGTGCGGCTCTGGAGGCATT
GGTCCCGGTTTCTATCCAACCGTCATACACCGTTACGATGTACTGTCCGTGCACCTTCCCCAAGTACTACCTCAATATAA
CACCAGGTATGGTAACTATATTCTTTTTTA--CATCATGCCATGTGATTTAGCAGCAACATAAGACTTTATTTTTTGCAC
TCTTGCTTGAAACTGGAACTTCTGTACTCTTGGTTGTCTGTCAGTACTTTTGTACTCTTGGTTGTCTGTCAGTTCTTGTG
TGTGCTTGCTTAGGAGAATGTATGTTTCAGTACTAACACTGTTGACATTTACTCCGTCCGTTTTTATTTACT----ATAT
TAGCTTTGACCTAAGTCAAACTTTATAAGTTTACAAAAGAAAGGGTTTCAAATATATATGCAATATATGTAATTTTCTCT
TATTTCTTTATATCTCAAACAGCATGATATAGGACCATGGAATTTTATTATATATAACATAGATTTGTAGTAGAATGTTT
TAATTAACAAAAATCAGAATTTTGGTGCAGTGAGAATAAACATACCACTATGAATGTACATACACCCATGCTTAGGAAAT
GCTTCACTAGTTTGGTCTTCTCGAAATTAACAGGTTTAGGTGTCTGGGACGGGAGGCAAGTTGCATATCTTAGTTATGAT
GACCCATGTGTCATTTATATATGTACATTACCTATTTACCTGTAGCCATCTGTTTTGTCCATTGTTATTTACTTAGTACT
AGTTTTATACCTCTTGTCGAGGCCCTCTCCAATAAGAATTAAGAAGTGCTCCATTGCGAAGTTTATGTGCATTTATTTCC
-CCACTCTTTTATATGTGAATGTCCCTTTGTTATATAATACCTTTTTGAACAGACATTGGCAGTCCAGTTGAGAAGGATA
AATCCGATAAATGGCCGCAAGGGAGACCCAGCCCCAATAACTCTG---GAAGTGTGCAGAGGAAGAGGAGGAGGAAGAAG
AAGCAGGC---ACGGGCTGCGGATTGCTGGTTGGAACAGCCATATTTGCTGTATTTTGTTGGCTGCGTATTGATTGCGAT
CTTCGTAAAAGTGTTCTTTCATCTGTCTGGAATGTAATAGTCAGTATGTTACCCTCTTATCTGCAAAAGTAGCGGCAAGC
ATAAGCATATTCTAGCAGCTGCTCTGCATGTAAAATGTTCTGGAACGAGTGTTGGATGAGGTTCAGTTTAAGCTGTGTTT
AACCAGTTCTGGAACCGGGAACGGTGCTGCAGTTGATATGTTGCTTCTAGTTCTTAAGCAAGTTGGAATAAAATCATTTG
AGCTTCATAGGTTTTCCCCATCAGTATGTTGCTTCTATCTTGTACCAATGAACAAACATGCAACATGTGTCTGCTTATTT
TTGTTCTGGTGGTAAGGTAAGTGATGTTTGTTGTTGCAGTCCAGTGAAGCTCCTTTTAACTGCGACAGATTGTCGAGCAA
ACGCACAGGCTTGTGCGTTCCTAGGCCAACCCAGTTCGGA----------------------------------------
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-------------------------------
>chr3D_3613
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----------------------------------------GAGTAATTGACAAAAAACTACCACATTTCACATATCCGTC
CCACAGAACTACCACATTTTGAAAACTGACCAAAAACTCCAGATTAGTGCTAATTTCGTGACAAAAAACTACCAGGTCGA
GTTGATGACCGTTTTTATGATTTTAAACCTGTTTATGACATGTGGGACCGGCAGCAAAGTCAACTCTGTTTATTTTGACC
GTCAAGTTAACCGTTATGACAGGTGGTACCCACACGTCATCATCAACCTTCTTCTTCCTCCCCTCCTCTCTCTCTTTGGC
ATTTCAACAAACACCTCTTGTGCATGAGACGGAAACAGGGGAGCTCCGGCCGCCTGCTCGCTTTACACCACGTCGGACCC
CAGCACGAGCGCCGGGTGAACTAGCTCCGGGTCGGCTCTGCCTCGCACTGCACGGCGGCAGCCTTCGCGGCGACATCGAT
GTCGGTGTCGCGAGCTACTGCTCGATGGTAGATGTGGGCCTGGCCGGTCGCCGGGCGCGGCCGTGTGTGGGCTGCAGGGG
ACGGTGCGGCACTGGGAGGAGGAGGCGGGGCGAGCCGTGAGCGCGGGTCTGGGAGGGTTCACGCGGCGGAGGCAGAGGCG
GGAGCCGAGCAGCGGCGGGGCTGCGGCGAGGCACGCAGGCCGGCGGGCAGCGCGAGCGGACGGCACGGGCGGTCTGCGGC
GGCGGGGCCGGCAAGCTGCAGCGGCAGCAAGCCAGCAGGGGGCGCGGGCAGGAG--------------------------
-------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----------------------------------S-----------------------------
------S------------------------------S----S-------------------------------------
--S--------------S--------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------S----------------------------S--------------------S--------------S---
-S-----------------------------------S-----------------------------------------S
------------------S-----------S-----------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------S-----S-----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
---------------------S--------------------------S----------------------------S--
-----------------------------SS-------------------------------------------------
--------------------------S----------------------------------------S------------
-----------S--------------------------S----------------------------------SS-----
---S------------------------S---------------------------------------------------
--------------------------------------------------------S-----------------------
-------------S------------------------------------------------------------------
-------S--------------------------------------------------------S---------------
-------------------------------------------------S-----------------------S------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
-------------------------------------------------S----------------------S-------
-----------------------------------------------------------------S--------------
--------------------------S--------------S---------------------S----------------
-S------------------------------S------------S----------------------------------
----S----------S----------------------------------------------------------------
--------------------------------------------------S-----------------------------
--S--------------------S-S---------------------------------S----------------S---
-------S----S------------S------------------------S-------------------SS--------
-S---------S-----------------------------S--------------------------------------
-----------------------------------------------S--------------------------------
-----------S--------------S-------S--S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S------S--S---------------S--------------S--------S------S---S-----S------------
----------------S----------------S----------------------------------------------
----------------S-S-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGACACGCTTC
AAGGAGGAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>reverse_1478
--------------------------------------------------------------------------------
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-------------------------------------AGGTCGAAGCCTTCATGAGC-----------------------
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-------------------------------
>forward_346
--------------------------------------------------------------------------------
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------GAAGCCACCAAACATCCACG------------------------------------------------------
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-------------------------------
>reverse_1520
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
CGGTAACGAGCACTATGCC-------------------------------------------------------------
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-------------------------------
>forward_535
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-----------------------------------ACCACCGGAACATACAAGGC-------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_1539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CGTGGCCTTCCTTCATCACC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>forward_1422
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ACCACTTCGTCTACTCCGCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_3193
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AGAAGAAG
AAGCAGGCACGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>forward_3170
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GCCCCAATAACTCTGGAGGG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_4282
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TGCGGGTCTAGGAGGGATC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
