Multiple sequence alignment - TraesCS3D01G051900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G051900 chr3D 100.000 2321 0 0 1 2321 21205469 21203149 0.000000e+00 4287.0
1 TraesCS3D01G051900 chr3D 93.552 791 46 3 212 1001 21194497 21193711 0.000000e+00 1173.0
2 TraesCS3D01G051900 chr3D 97.321 224 5 1 1 223 339331998 339331775 1.680000e-101 379.0
3 TraesCS3D01G051900 chr3B 91.084 1144 67 8 1035 2154 35148278 35149410 0.000000e+00 1515.0
4 TraesCS3D01G051900 chr3B 90.909 1144 69 8 1035 2154 35063928 35065060 0.000000e+00 1504.0
5 TraesCS3D01G051900 chr3B 88.064 687 67 11 212 889 35061386 35062066 0.000000e+00 800.0
6 TraesCS3D01G051900 chr3B 88.081 688 65 13 212 889 35145737 35146417 0.000000e+00 800.0
7 TraesCS3D01G051900 chr3B 76.149 805 128 37 1039 1801 35461979 35462761 4.710000e-97 364.0
8 TraesCS3D01G051900 chr3B 85.804 317 35 8 212 526 35729580 35729888 6.180000e-86 327.0
9 TraesCS3D01G051900 chr3B 85.804 317 35 8 212 526 35801270 35801578 6.180000e-86 327.0
10 TraesCS3D01G051900 chr3B 89.005 191 13 7 338 526 34527339 34527155 1.790000e-56 230.0
11 TraesCS3D01G051900 chr3B 90.341 176 16 1 2146 2321 35070216 35070390 1.790000e-56 230.0
12 TraesCS3D01G051900 chr3B 90.341 176 16 1 2146 2321 35154566 35154740 1.790000e-56 230.0
13 TraesCS3D01G051900 chr3B 92.025 163 13 0 839 1001 35635979 35636141 1.790000e-56 230.0
14 TraesCS3D01G051900 chr3B 89.005 191 11 8 338 526 34472204 34472022 6.450000e-56 228.0
15 TraesCS3D01G051900 chr3B 91.411 163 14 0 839 1001 34472021 34471859 8.350000e-55 224.0
16 TraesCS3D01G051900 chr3B 91.411 163 14 0 839 1001 35569321 35569483 8.350000e-55 224.0
17 TraesCS3D01G051900 chr3B 91.720 157 13 0 845 1001 34527148 34526992 3.880000e-53 219.0
18 TraesCS3D01G051900 chr3B 89.571 163 17 0 839 1001 35729889 35730051 8.410000e-50 207.0
19 TraesCS3D01G051900 chrUn 83.363 553 81 10 1032 1578 44500715 44500168 3.440000e-138 501.0
20 TraesCS3D01G051900 chrUn 83.032 554 81 12 1032 1578 44529410 44528863 7.450000e-135 490.0
21 TraesCS3D01G051900 chrUn 82.944 557 80 11 1032 1578 44297241 44297792 2.680000e-134 488.0
22 TraesCS3D01G051900 chrUn 82.914 556 80 14 1032 1578 44271407 44271956 9.640000e-134 486.0
23 TraesCS3D01G051900 chrUn 86.087 460 49 12 1035 1492 43770569 43771015 4.490000e-132 481.0
24 TraesCS3D01G051900 chrUn 84.565 460 57 13 1035 1492 43664891 43665338 5.880000e-121 444.0
25 TraesCS3D01G051900 chrUn 83.130 492 58 16 1035 1511 43650867 43651348 2.130000e-115 425.0
26 TraesCS3D01G051900 chrUn 86.869 297 36 3 212 505 377177141 377177437 1.720000e-86 329.0
27 TraesCS3D01G051900 chrUn 88.482 191 12 8 338 526 478634797 478634979 3.000000e-54 222.0
28 TraesCS3D01G051900 chrUn 92.806 139 10 0 839 977 478634980 478635118 3.910000e-48 202.0
29 TraesCS3D01G051900 chrUn 88.889 162 18 0 840 1001 377177448 377177609 1.410000e-47 200.0
30 TraesCS3D01G051900 chrUn 72.593 405 70 31 1416 1804 390052009 390051630 6.830000e-16 95.3
31 TraesCS3D01G051900 chrUn 72.778 360 63 26 1416 1762 338662713 338663050 3.180000e-14 89.8
32 TraesCS3D01G051900 chrUn 83.838 99 7 8 1416 1511 257906906 257906998 4.110000e-13 86.1
33 TraesCS3D01G051900 chr4D 100.000 211 0 0 1 211 293105673 293105463 7.780000e-105 390.0
34 TraesCS3D01G051900 chr4D 97.738 221 3 2 1 221 243796936 243796718 1.680000e-101 379.0
35 TraesCS3D01G051900 chr7D 99.528 212 1 0 1 212 105309562 105309351 1.010000e-103 387.0
36 TraesCS3D01G051900 chr7D 99.070 215 2 0 1 215 106159245 106159459 1.010000e-103 387.0
37 TraesCS3D01G051900 chr6D 99.526 211 1 0 1 211 148739316 148739526 3.620000e-103 385.0
38 TraesCS3D01G051900 chr6D 99.057 212 1 1 1 211 210338033 210338244 1.680000e-101 379.0
39 TraesCS3D01G051900 chr1D 98.174 219 2 2 1 218 85225534 85225751 4.680000e-102 381.0
40 TraesCS3D01G051900 chr2D 97.738 221 3 2 1 219 31830794 31830574 1.680000e-101 379.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G051900 chr3D 21203149 21205469 2320 True 4287.0 4287 100.0000 1 2321 1 chr3D.!!$R2 2320
1 TraesCS3D01G051900 chr3D 21193711 21194497 786 True 1173.0 1173 93.5520 212 1001 1 chr3D.!!$R1 789
2 TraesCS3D01G051900 chr3B 35145737 35149410 3673 False 1157.5 1515 89.5825 212 2154 2 chr3B.!!$F8 1942
3 TraesCS3D01G051900 chr3B 35061386 35065060 3674 False 1152.0 1504 89.4865 212 2154 2 chr3B.!!$F7 1942
4 TraesCS3D01G051900 chr3B 35461979 35462761 782 False 364.0 364 76.1490 1039 1801 1 chr3B.!!$F3 762
5 TraesCS3D01G051900 chrUn 44500168 44500715 547 True 501.0 501 83.3630 1032 1578 1 chrUn.!!$R1 546
6 TraesCS3D01G051900 chrUn 44528863 44529410 547 True 490.0 490 83.0320 1032 1578 1 chrUn.!!$R2 546
7 TraesCS3D01G051900 chrUn 44297241 44297792 551 False 488.0 488 82.9440 1032 1578 1 chrUn.!!$F5 546
8 TraesCS3D01G051900 chrUn 44271407 44271956 549 False 486.0 486 82.9140 1032 1578 1 chrUn.!!$F4 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.0 0.0 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 3410 0.035915 GAGTGCTTTCCCAGACTCCC 60.036 60.0 0.0 0.0 30.55 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.901627 GCTGAACGTGTGCTGAAC 57.098 55.556 0.00 0.00 0.00 3.18
18 19 2.311294 GCTGAACGTGTGCTGAACT 58.689 52.632 0.00 0.00 0.00 3.01
19 20 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
23 24 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
24 25 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
25 26 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
26 27 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
27 28 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
28 29 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
44 45 3.152703 CCGTGCGTTCGGTACTTG 58.847 61.111 11.17 0.00 44.77 3.16
45 46 1.372004 CCGTGCGTTCGGTACTTGA 60.372 57.895 11.17 0.00 44.77 3.02
46 47 0.734942 CCGTGCGTTCGGTACTTGAT 60.735 55.000 11.17 0.00 44.77 2.57
47 48 1.065358 CGTGCGTTCGGTACTTGATT 58.935 50.000 0.00 0.00 0.00 2.57
48 49 1.201769 CGTGCGTTCGGTACTTGATTG 60.202 52.381 0.00 0.00 0.00 2.67
49 50 1.127951 GTGCGTTCGGTACTTGATTGG 59.872 52.381 0.00 0.00 0.00 3.16
50 51 1.270412 TGCGTTCGGTACTTGATTGGT 60.270 47.619 0.00 0.00 0.00 3.67
51 52 1.392510 GCGTTCGGTACTTGATTGGTC 59.607 52.381 0.00 0.00 0.00 4.02
52 53 1.652124 CGTTCGGTACTTGATTGGTCG 59.348 52.381 0.00 0.00 0.00 4.79
53 54 1.997606 GTTCGGTACTTGATTGGTCGG 59.002 52.381 0.00 0.00 0.00 4.79
54 55 1.548081 TCGGTACTTGATTGGTCGGA 58.452 50.000 0.00 0.00 0.00 4.55
55 56 2.104967 TCGGTACTTGATTGGTCGGAT 58.895 47.619 0.00 0.00 0.00 4.18
56 57 2.100252 TCGGTACTTGATTGGTCGGATC 59.900 50.000 0.00 0.00 0.00 3.36
57 58 2.470821 GGTACTTGATTGGTCGGATCG 58.529 52.381 0.00 0.00 0.00 3.69
58 59 2.159142 GGTACTTGATTGGTCGGATCGT 60.159 50.000 0.00 0.00 0.00 3.73
59 60 2.010145 ACTTGATTGGTCGGATCGTG 57.990 50.000 0.00 0.00 0.00 4.35
60 61 1.548719 ACTTGATTGGTCGGATCGTGA 59.451 47.619 0.00 0.00 0.00 4.35
61 62 2.028476 ACTTGATTGGTCGGATCGTGAA 60.028 45.455 0.00 0.00 0.00 3.18
62 63 2.293677 TGATTGGTCGGATCGTGAAG 57.706 50.000 0.00 0.00 0.00 3.02
63 64 1.822371 TGATTGGTCGGATCGTGAAGA 59.178 47.619 0.00 0.00 0.00 2.87
64 65 2.194271 GATTGGTCGGATCGTGAAGAC 58.806 52.381 0.00 0.00 0.00 3.01
66 67 1.239296 TGGTCGGATCGTGAAGACGT 61.239 55.000 0.00 0.00 46.20 4.34
67 68 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
68 69 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
69 70 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
75 76 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
76 77 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
77 78 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
78 79 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
79 80 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
80 81 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
81 82 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
82 83 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
83 84 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
84 85 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
85 86 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
86 87 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
87 88 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
88 89 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
89 90 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
90 91 1.144969 CTACATCAACCGCGTTGTGT 58.855 50.000 20.57 20.57 43.23 3.72
91 92 1.529438 CTACATCAACCGCGTTGTGTT 59.471 47.619 21.25 11.61 43.23 3.32
92 93 1.584175 ACATCAACCGCGTTGTGTTA 58.416 45.000 16.97 3.28 43.23 2.41
93 94 1.941294 ACATCAACCGCGTTGTGTTAA 59.059 42.857 16.97 0.00 43.23 2.01
94 95 2.286536 ACATCAACCGCGTTGTGTTAAC 60.287 45.455 16.97 0.00 43.23 2.01
95 96 0.301088 TCAACCGCGTTGTGTTAACG 59.699 50.000 16.97 7.73 43.23 3.18
101 102 3.338603 CGTTGTGTTAACGCTTCCG 57.661 52.632 19.29 13.98 36.82 4.30
102 103 0.720173 CGTTGTGTTAACGCTTCCGC 60.720 55.000 19.29 5.19 36.82 5.54
103 104 0.584876 GTTGTGTTAACGCTTCCGCT 59.415 50.000 19.29 0.00 38.22 5.52
104 105 1.003223 GTTGTGTTAACGCTTCCGCTT 60.003 47.619 19.29 0.00 38.22 4.68
105 106 1.301423 TGTGTTAACGCTTCCGCTTT 58.699 45.000 19.29 0.00 38.22 3.51
106 107 1.262151 TGTGTTAACGCTTCCGCTTTC 59.738 47.619 19.29 0.00 38.22 2.62
107 108 0.509499 TGTTAACGCTTCCGCTTTCG 59.491 50.000 0.26 0.00 38.22 3.46
125 126 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
127 128 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
128 129 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
129 130 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
130 131 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
131 132 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
132 133 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
140 141 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
141 142 0.321996 GTGGACAACACTCTCCCCTC 59.678 60.000 0.00 0.00 46.72 4.30
142 143 0.191064 TGGACAACACTCTCCCCTCT 59.809 55.000 0.00 0.00 0.00 3.69
143 144 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
144 145 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
145 146 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
146 147 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
147 148 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
148 149 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
149 150 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
150 151 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
151 152 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
152 153 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
153 154 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
154 155 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
155 156 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
156 157 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
157 158 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
158 159 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
159 160 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
160 161 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
161 162 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
162 163 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
163 164 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
164 165 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
165 166 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
166 167 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
167 168 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
168 169 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
169 170 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
170 171 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
171 172 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
172 173 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
173 174 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
174 175 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
175 176 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
207 208 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
208 209 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
209 210 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
210 211 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
236 237 8.752766 TTATTTCGACGGGATCTGATTATAAC 57.247 34.615 0.00 0.00 0.00 1.89
264 265 5.527582 CCATAGGATCAAACTTTCCTTACCG 59.472 44.000 0.00 0.00 42.40 4.02
269 270 7.854337 AGGATCAAACTTTCCTTACCGTATTA 58.146 34.615 0.00 0.00 39.36 0.98
334 335 8.584157 AGTCTCAGTGGATTCTATTATCATCAC 58.416 37.037 0.00 0.00 0.00 3.06
462 465 8.593945 AGATGGGCTTTTCTTGTTTTCATATA 57.406 30.769 0.00 0.00 0.00 0.86
484 489 2.950975 GAGAACCTACCGGTAGAAGGAG 59.049 54.545 37.76 24.26 44.73 3.69
491 496 2.537143 ACCGGTAGAAGGAGATGTTGT 58.463 47.619 4.49 0.00 0.00 3.32
496 501 3.997021 GGTAGAAGGAGATGTTGTGTGTG 59.003 47.826 0.00 0.00 0.00 3.82
500 505 4.576463 AGAAGGAGATGTTGTGTGTGTTTC 59.424 41.667 0.00 0.00 0.00 2.78
662 669 6.026513 GCATGAAGAGAAAGAACATTAGTGC 58.973 40.000 0.00 0.00 0.00 4.40
722 729 6.515862 GCCCACTAAGTAGAGATCACATGTAG 60.516 46.154 0.00 0.00 0.00 2.74
752 759 7.694886 AGCTAAGGAAACTAATTATTCAACGC 58.305 34.615 0.00 0.00 42.68 4.84
775 783 2.751259 AGTTACGTCAGCCGAATGACTA 59.249 45.455 15.15 6.69 46.04 2.59
816 826 6.149129 TGAGGTGTAGATGCACACTATTAG 57.851 41.667 6.37 0.00 46.52 1.73
829 839 5.685075 GCACACTATTAGTTATCCAGTGCCT 60.685 44.000 17.48 0.00 42.74 4.75
843 853 3.057596 CCAGTGCCTTTTCGCTTCATAAA 60.058 43.478 0.00 0.00 0.00 1.40
889 899 0.318699 ATGGCGTCGTGTATGGATCG 60.319 55.000 0.00 0.00 0.00 3.69
900 910 1.412710 GTATGGATCGAGACCCTGCAA 59.587 52.381 8.60 0.00 0.00 4.08
946 2187 4.055360 CACAGCGGATCCGTATTCAATTA 58.945 43.478 33.33 0.00 42.09 1.40
969 2210 2.737039 GCACATCTCGAACTCTCTTCCC 60.737 54.545 0.00 0.00 0.00 3.97
978 2219 2.322355 ACTCTCTTCCCAATGATGCG 57.678 50.000 0.00 0.00 0.00 4.73
1001 2242 6.757010 GCGGTATGTGGATCGAGAAATTATAT 59.243 38.462 0.00 0.00 0.00 0.86
1002 2243 7.254117 GCGGTATGTGGATCGAGAAATTATATG 60.254 40.741 0.00 0.00 0.00 1.78
1011 2252 9.862371 GGATCGAGAAATTATATGTACTGTCAT 57.138 33.333 0.00 0.00 0.00 3.06
1014 2255 9.476202 TCGAGAAATTATATGTACTGTCATTGG 57.524 33.333 0.00 0.00 0.00 3.16
1037 2378 9.781633 TTGGTTTACTTTATTACTAGTCAAGCA 57.218 29.630 0.00 0.00 35.44 3.91
1093 2818 2.679092 CCTTGAGCCCCTGCATCA 59.321 61.111 0.00 0.00 41.13 3.07
1094 2819 1.453379 CCTTGAGCCCCTGCATCAG 60.453 63.158 0.00 0.00 41.13 2.90
1265 2990 0.038166 GGCATTCCCTCCAAGTGTGA 59.962 55.000 0.00 0.00 0.00 3.58
1326 3051 4.142071 TGCTCTAAGATTCGCTGATCAACT 60.142 41.667 0.00 0.00 0.00 3.16
1332 3057 3.449018 AGATTCGCTGATCAACTACTGGT 59.551 43.478 0.00 0.00 0.00 4.00
1367 3109 3.181482 CGCTAATAGCTCCATCCATCGAT 60.181 47.826 10.80 0.00 39.60 3.59
1407 3169 4.392138 TCACACACACACACACGAATAAAA 59.608 37.500 0.00 0.00 0.00 1.52
1412 3174 3.250040 ACACACACACGAATAAAAGCTCC 59.750 43.478 0.00 0.00 0.00 4.70
1446 3208 3.214696 TGTGTGTGTGAGAGAGAGAGA 57.785 47.619 0.00 0.00 0.00 3.10
1450 3212 2.095263 GTGTGTGAGAGAGAGAGAGTGC 60.095 54.545 0.00 0.00 0.00 4.40
1516 3280 4.319766 CGATGTTTGGTTGTTCCTTCTCTG 60.320 45.833 0.00 0.00 37.07 3.35
1517 3281 3.287222 TGTTTGGTTGTTCCTTCTCTGG 58.713 45.455 0.00 0.00 37.07 3.86
1535 3299 1.688735 TGGCTTCGAGGAGATACATGG 59.311 52.381 0.00 0.00 0.00 3.66
1546 3310 6.179906 AGGAGATACATGGGTTTGTCATAG 57.820 41.667 0.00 0.00 0.00 2.23
1607 3381 2.678836 GCTCTACTCTCTACTCACGCAA 59.321 50.000 0.00 0.00 0.00 4.85
1629 3408 5.718649 AGTCGTTATTGCACATGTATGAC 57.281 39.130 0.00 3.06 0.00 3.06
1630 3409 4.570772 AGTCGTTATTGCACATGTATGACC 59.429 41.667 11.16 0.00 0.00 4.02
1631 3410 3.553917 TCGTTATTGCACATGTATGACCG 59.446 43.478 0.00 0.00 0.00 4.79
1632 3411 3.303066 CGTTATTGCACATGTATGACCGG 60.303 47.826 0.00 0.00 0.00 5.28
1633 3412 1.679139 ATTGCACATGTATGACCGGG 58.321 50.000 6.32 0.00 0.00 5.73
1634 3413 0.615850 TTGCACATGTATGACCGGGA 59.384 50.000 6.32 0.00 0.00 5.14
1635 3414 0.177836 TGCACATGTATGACCGGGAG 59.822 55.000 6.32 0.00 0.00 4.30
1636 3415 0.178068 GCACATGTATGACCGGGAGT 59.822 55.000 6.32 0.00 0.00 3.85
1648 3427 1.376037 CGGGAGTCTGGGAAAGCAC 60.376 63.158 0.00 0.00 0.00 4.40
1661 3440 3.057245 GGGAAAGCACTCCATTCAAGTTC 60.057 47.826 6.45 0.00 37.20 3.01
1667 3447 3.152341 CACTCCATTCAAGTTCCTGCTT 58.848 45.455 0.00 0.00 0.00 3.91
1773 3554 2.904434 ACCCTAAAACCGTGAGAGATGT 59.096 45.455 0.00 0.00 0.00 3.06
1874 3670 2.330216 CCCCACGGAATAAGATCCTCT 58.670 52.381 0.00 0.00 37.34 3.69
1918 3714 4.777896 AGGTCTGTAGGTCTGCTCAAATTA 59.222 41.667 0.00 0.00 0.00 1.40
1949 3745 4.466828 CAGTTCGCCACAAAATACTTCTG 58.533 43.478 0.00 0.00 0.00 3.02
1985 3781 7.173562 AGCTAATTTTCAAACCATGTACACGTA 59.826 33.333 0.00 0.00 0.00 3.57
2038 3834 9.899661 TTAAGCACCAATTATTAGTGAGTACAT 57.100 29.630 7.64 0.00 33.21 2.29
2039 3835 8.438676 AAGCACCAATTATTAGTGAGTACATC 57.561 34.615 7.64 0.00 33.21 3.06
2053 3849 5.856455 GTGAGTACATCAACGAAAATTTGGG 59.144 40.000 0.00 0.00 40.43 4.12
2081 3884 7.044181 ACTCATGATTGTGATGGTAAGTACAG 58.956 38.462 0.00 0.00 0.00 2.74
2125 3928 7.939039 ACAAATGGATCGGATAGTATGAAATGT 59.061 33.333 0.00 0.00 0.00 2.71
2129 3932 7.154656 TGGATCGGATAGTATGAAATGTTCAG 58.845 38.462 0.00 0.00 43.98 3.02
2154 3957 3.090210 TCTACAACTGGACACCCGATA 57.910 47.619 0.00 0.00 34.29 2.92
2155 3958 3.021695 TCTACAACTGGACACCCGATAG 58.978 50.000 0.00 0.00 34.29 2.08
2156 3959 0.249398 ACAACTGGACACCCGATAGC 59.751 55.000 0.00 0.00 34.29 2.97
2157 3960 0.462047 CAACTGGACACCCGATAGCC 60.462 60.000 0.00 0.00 34.29 3.93
2158 3961 1.956629 AACTGGACACCCGATAGCCG 61.957 60.000 0.00 0.00 38.18 5.52
2159 3962 3.792053 CTGGACACCCGATAGCCGC 62.792 68.421 0.00 0.00 36.84 6.53
2160 3963 4.603946 GGACACCCGATAGCCGCC 62.604 72.222 0.00 0.00 36.84 6.13
2161 3964 4.603946 GACACCCGATAGCCGCCC 62.604 72.222 0.00 0.00 36.84 6.13
2165 3968 4.183858 CCCGATAGCCGCCCCAAA 62.184 66.667 0.00 0.00 36.84 3.28
2166 3969 2.113139 CCGATAGCCGCCCCAAAT 59.887 61.111 0.00 0.00 36.84 2.32
2167 3970 2.260869 CCGATAGCCGCCCCAAATG 61.261 63.158 0.00 0.00 36.84 2.32
2168 3971 2.908073 CGATAGCCGCCCCAAATGC 61.908 63.158 0.00 0.00 0.00 3.56
2169 3972 2.521708 ATAGCCGCCCCAAATGCC 60.522 61.111 0.00 0.00 0.00 4.40
2170 3973 2.983725 GATAGCCGCCCCAAATGCCT 62.984 60.000 0.00 0.00 0.00 4.75
2201 4004 4.436998 GGACAGTGCCCGGACGAG 62.437 72.222 0.73 0.00 0.00 4.18
2202 4005 3.681835 GACAGTGCCCGGACGAGT 61.682 66.667 0.73 0.00 0.00 4.18
2203 4006 3.222354 GACAGTGCCCGGACGAGTT 62.222 63.158 0.73 0.00 0.00 3.01
2204 4007 2.030562 CAGTGCCCGGACGAGTTT 59.969 61.111 0.73 0.00 0.00 2.66
2205 4008 1.597027 CAGTGCCCGGACGAGTTTT 60.597 57.895 0.73 0.00 0.00 2.43
2206 4009 1.597027 AGTGCCCGGACGAGTTTTG 60.597 57.895 0.73 0.00 0.00 2.44
2207 4010 2.281208 TGCCCGGACGAGTTTTGG 60.281 61.111 0.73 0.00 0.00 3.28
2208 4011 3.733960 GCCCGGACGAGTTTTGGC 61.734 66.667 0.73 0.00 0.00 4.52
2209 4012 3.053896 CCCGGACGAGTTTTGGCC 61.054 66.667 0.73 0.00 0.00 5.36
2210 4013 2.281208 CCGGACGAGTTTTGGCCA 60.281 61.111 0.00 0.00 0.00 5.36
2211 4014 2.613506 CCGGACGAGTTTTGGCCAC 61.614 63.158 3.88 0.00 0.00 5.01
2212 4015 2.613506 CGGACGAGTTTTGGCCACC 61.614 63.158 3.88 0.00 0.00 4.61
2213 4016 1.527380 GGACGAGTTTTGGCCACCA 60.527 57.895 3.88 0.00 0.00 4.17
2214 4017 1.104577 GGACGAGTTTTGGCCACCAA 61.105 55.000 3.88 0.00 42.29 3.67
2220 4023 3.962557 TTTGGCCACCAAACCAGG 58.037 55.556 3.88 0.00 46.92 4.45
2221 4024 2.439104 TTTGGCCACCAAACCAGGC 61.439 57.895 3.88 0.00 46.92 4.85
2225 4028 2.917227 CCACCAAACCAGGCACCC 60.917 66.667 0.00 0.00 0.00 4.61
2226 4029 2.917227 CACCAAACCAGGCACCCC 60.917 66.667 0.00 0.00 0.00 4.95
2227 4030 3.434179 ACCAAACCAGGCACCCCA 61.434 61.111 0.00 0.00 0.00 4.96
2228 4031 2.120274 CCAAACCAGGCACCCCAT 59.880 61.111 0.00 0.00 0.00 4.00
2229 4032 1.386155 CCAAACCAGGCACCCCATA 59.614 57.895 0.00 0.00 0.00 2.74
2230 4033 0.970427 CCAAACCAGGCACCCCATAC 60.970 60.000 0.00 0.00 0.00 2.39
2231 4034 0.970427 CAAACCAGGCACCCCATACC 60.970 60.000 0.00 0.00 0.00 2.73
2232 4035 1.146544 AAACCAGGCACCCCATACCT 61.147 55.000 0.00 0.00 0.00 3.08
2234 4037 2.597340 CAGGCACCCCATACCTGG 59.403 66.667 0.19 0.00 45.97 4.45
2243 4046 2.126951 CCATACCTGGGCCAAATGC 58.873 57.895 8.04 0.00 39.04 3.56
2254 4057 2.014335 GCCAAATGCCTGGACAAATC 57.986 50.000 0.00 0.00 38.96 2.17
2255 4058 1.736696 GCCAAATGCCTGGACAAATCG 60.737 52.381 0.00 0.00 38.96 3.34
2256 4059 1.135024 CCAAATGCCTGGACAAATCGG 60.135 52.381 0.00 0.00 38.96 4.18
2257 4060 0.532115 AAATGCCTGGACAAATCGGC 59.468 50.000 0.00 0.00 42.78 5.54
2259 4062 1.001020 TGCCTGGACAAATCGGCAT 60.001 52.632 0.00 0.00 46.75 4.40
2260 4063 0.611618 TGCCTGGACAAATCGGCATT 60.612 50.000 0.00 0.00 46.75 3.56
2261 4064 0.101219 GCCTGGACAAATCGGCATTC 59.899 55.000 0.00 0.00 42.06 2.67
2262 4065 0.740737 CCTGGACAAATCGGCATTCC 59.259 55.000 0.00 0.00 0.00 3.01
2263 4066 0.740737 CTGGACAAATCGGCATTCCC 59.259 55.000 0.00 0.00 0.00 3.97
2264 4067 0.682855 TGGACAAATCGGCATTCCCC 60.683 55.000 0.00 0.00 0.00 4.81
2265 4068 0.682855 GGACAAATCGGCATTCCCCA 60.683 55.000 0.00 0.00 0.00 4.96
2266 4069 1.402787 GACAAATCGGCATTCCCCAT 58.597 50.000 0.00 0.00 0.00 4.00
2267 4070 2.582052 GACAAATCGGCATTCCCCATA 58.418 47.619 0.00 0.00 0.00 2.74
2268 4071 3.157087 GACAAATCGGCATTCCCCATAT 58.843 45.455 0.00 0.00 0.00 1.78
2269 4072 3.157087 ACAAATCGGCATTCCCCATATC 58.843 45.455 0.00 0.00 0.00 1.63
2270 4073 2.493278 CAAATCGGCATTCCCCATATCC 59.507 50.000 0.00 0.00 0.00 2.59
2271 4074 0.253044 ATCGGCATTCCCCATATCCG 59.747 55.000 0.00 0.00 38.34 4.18
2272 4075 1.377202 CGGCATTCCCCATATCCGG 60.377 63.158 0.00 0.00 33.85 5.14
2273 4076 1.678970 GGCATTCCCCATATCCGGC 60.679 63.158 0.00 0.00 0.00 6.13
2274 4077 1.678970 GCATTCCCCATATCCGGCC 60.679 63.158 0.00 0.00 0.00 6.13
2275 4078 1.000896 CATTCCCCATATCCGGCCC 60.001 63.158 0.00 0.00 0.00 5.80
2276 4079 1.151587 ATTCCCCATATCCGGCCCT 60.152 57.895 0.00 0.00 0.00 5.19
2277 4080 0.776080 ATTCCCCATATCCGGCCCTT 60.776 55.000 0.00 0.00 0.00 3.95
2278 4081 0.104356 TTCCCCATATCCGGCCCTTA 60.104 55.000 0.00 0.00 0.00 2.69
2279 4082 0.120377 TCCCCATATCCGGCCCTTAT 59.880 55.000 0.00 0.00 0.00 1.73
2280 4083 1.366787 TCCCCATATCCGGCCCTTATA 59.633 52.381 0.00 0.00 0.00 0.98
2281 4084 2.021441 TCCCCATATCCGGCCCTTATAT 60.021 50.000 0.00 0.00 0.00 0.86
2282 4085 2.106511 CCCCATATCCGGCCCTTATATG 59.893 54.545 15.16 15.16 34.68 1.78
2283 4086 2.106511 CCCATATCCGGCCCTTATATGG 59.893 54.545 25.48 25.48 46.54 2.74
2284 4087 2.106511 CCATATCCGGCCCTTATATGGG 59.893 54.545 25.07 17.66 44.64 4.00
2285 4088 5.091646 CCATATCCGGCCCTTATATGGGG 62.092 56.522 25.07 14.49 44.64 4.96
2295 4098 5.116084 CCCTTATATGGGGTGGATATGTG 57.884 47.826 14.76 0.00 43.45 3.21
2296 4099 4.079787 CCCTTATATGGGGTGGATATGTGG 60.080 50.000 14.76 0.00 43.45 4.17
2297 4100 4.788075 CCTTATATGGGGTGGATATGTGGA 59.212 45.833 0.00 0.00 0.00 4.02
2298 4101 5.104360 CCTTATATGGGGTGGATATGTGGAG 60.104 48.000 0.00 0.00 0.00 3.86
2299 4102 1.449271 ATGGGGTGGATATGTGGAGG 58.551 55.000 0.00 0.00 0.00 4.30
2300 4103 1.352622 TGGGGTGGATATGTGGAGGC 61.353 60.000 0.00 0.00 0.00 4.70
2301 4104 1.456287 GGGTGGATATGTGGAGGCC 59.544 63.158 0.00 0.00 0.00 5.19
2302 4105 1.456287 GGTGGATATGTGGAGGCCC 59.544 63.158 0.00 0.00 0.00 5.80
2303 4106 1.071471 GTGGATATGTGGAGGCCCG 59.929 63.158 0.00 0.00 34.29 6.13
2304 4107 2.146724 TGGATATGTGGAGGCCCGG 61.147 63.158 0.00 0.00 34.29 5.73
2305 4108 1.841556 GGATATGTGGAGGCCCGGA 60.842 63.158 0.73 0.00 34.29 5.14
2306 4109 1.371558 GATATGTGGAGGCCCGGAC 59.628 63.158 0.73 0.00 34.29 4.79
2307 4110 2.436087 GATATGTGGAGGCCCGGACG 62.436 65.000 0.73 0.00 34.29 4.79
2308 4111 3.968837 TATGTGGAGGCCCGGACGT 62.969 63.158 0.73 0.00 34.29 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
2 3 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
3 4 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
4 5 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
5 6 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
6 7 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
7 8 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
8 9 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
9 10 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
10 11 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
11 12 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
28 29 1.065358 AATCAAGTACCGAACGCACG 58.935 50.000 0.00 0.00 0.00 5.34
29 30 1.127951 CCAATCAAGTACCGAACGCAC 59.872 52.381 0.00 0.00 0.00 5.34
30 31 1.270412 ACCAATCAAGTACCGAACGCA 60.270 47.619 0.00 0.00 0.00 5.24
31 32 1.392510 GACCAATCAAGTACCGAACGC 59.607 52.381 0.00 0.00 0.00 4.84
32 33 1.652124 CGACCAATCAAGTACCGAACG 59.348 52.381 0.00 0.00 0.00 3.95
33 34 1.997606 CCGACCAATCAAGTACCGAAC 59.002 52.381 0.00 0.00 0.00 3.95
34 35 1.894466 TCCGACCAATCAAGTACCGAA 59.106 47.619 0.00 0.00 0.00 4.30
35 36 1.548081 TCCGACCAATCAAGTACCGA 58.452 50.000 0.00 0.00 0.00 4.69
36 37 2.470821 GATCCGACCAATCAAGTACCG 58.529 52.381 0.00 0.00 0.00 4.02
37 38 2.159142 ACGATCCGACCAATCAAGTACC 60.159 50.000 0.00 0.00 0.00 3.34
38 39 2.858344 CACGATCCGACCAATCAAGTAC 59.142 50.000 0.00 0.00 0.00 2.73
39 40 2.756207 TCACGATCCGACCAATCAAGTA 59.244 45.455 0.00 0.00 0.00 2.24
40 41 1.548719 TCACGATCCGACCAATCAAGT 59.451 47.619 0.00 0.00 0.00 3.16
41 42 2.293677 TCACGATCCGACCAATCAAG 57.706 50.000 0.00 0.00 0.00 3.02
42 43 2.232696 TCTTCACGATCCGACCAATCAA 59.767 45.455 0.00 0.00 0.00 2.57
43 44 1.822371 TCTTCACGATCCGACCAATCA 59.178 47.619 0.00 0.00 0.00 2.57
44 45 2.194271 GTCTTCACGATCCGACCAATC 58.806 52.381 0.00 0.00 0.00 2.67
45 46 2.295253 GTCTTCACGATCCGACCAAT 57.705 50.000 0.00 0.00 0.00 3.16
46 47 3.806591 GTCTTCACGATCCGACCAA 57.193 52.632 0.00 0.00 0.00 3.67
57 58 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
58 59 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
59 60 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
60 61 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
61 62 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
62 63 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
63 64 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
64 65 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
65 66 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
66 67 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
67 68 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
68 69 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
69 70 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
70 71 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
71 72 1.144969 ACACAACGCGGTTGATGTAG 58.855 50.000 22.26 1.41 45.28 2.74
72 73 1.584175 AACACAACGCGGTTGATGTA 58.416 45.000 22.26 0.00 45.28 2.29
73 74 1.584175 TAACACAACGCGGTTGATGT 58.416 45.000 22.26 18.62 45.28 3.06
74 75 2.303537 GTTAACACAACGCGGTTGATG 58.696 47.619 22.26 18.17 45.28 3.07
75 76 1.070443 CGTTAACACAACGCGGTTGAT 60.070 47.619 22.26 10.28 45.28 2.57
76 77 0.301088 CGTTAACACAACGCGGTTGA 59.699 50.000 22.26 7.25 45.28 3.18
83 84 3.338603 CGGAAGCGTTAACACAACG 57.661 52.632 6.39 5.22 45.56 4.10
100 101 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
101 102 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
102 103 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
103 104 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
104 105 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
105 106 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
106 107 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
107 108 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
108 109 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
109 110 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
110 111 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
111 112 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
112 113 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
113 114 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
114 115 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
119 120 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
121 122 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
122 123 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
123 124 0.191064 AGAGGGGAGAGTGTTGTCCA 59.809 55.000 0.00 0.00 38.50 4.02
124 125 0.899019 GAGAGGGGAGAGTGTTGTCC 59.101 60.000 0.00 0.00 36.03 4.02
125 126 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
126 127 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
127 128 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
128 129 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
129 130 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
130 131 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
131 132 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
132 133 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
133 134 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
134 135 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
135 136 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
136 137 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
137 138 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
138 139 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
139 140 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
140 141 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
141 142 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
142 143 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
143 144 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
144 145 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
145 146 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
146 147 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
147 148 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
148 149 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
149 150 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
150 151 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
151 152 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
152 153 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
153 154 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
154 155 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
155 156 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
156 157 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
157 158 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
158 159 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
159 160 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
160 161 1.135112 TCTACGCACACGCAAGATCAT 60.135 47.619 0.00 0.00 45.53 2.45
161 162 0.242555 TCTACGCACACGCAAGATCA 59.757 50.000 0.00 0.00 45.53 2.92
162 163 1.346365 TTCTACGCACACGCAAGATC 58.654 50.000 0.00 0.00 45.53 2.75
163 164 2.010145 ATTCTACGCACACGCAAGAT 57.990 45.000 0.00 0.00 45.53 2.40
164 165 1.790755 AATTCTACGCACACGCAAGA 58.209 45.000 0.00 0.00 45.53 3.02
165 166 2.594529 AAATTCTACGCACACGCAAG 57.405 45.000 0.00 0.00 45.53 4.01
166 167 3.341857 AAAAATTCTACGCACACGCAA 57.658 38.095 0.00 0.00 45.53 4.85
184 185 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
185 186 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
186 187 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
187 188 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
188 189 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
189 190 6.505044 AATGTTGGGGAACGTAGTAATTTC 57.495 37.500 0.00 0.00 45.00 2.17
190 191 8.584063 AATAATGTTGGGGAACGTAGTAATTT 57.416 30.769 0.00 0.00 45.00 1.82
191 192 8.584063 AAATAATGTTGGGGAACGTAGTAATT 57.416 30.769 0.00 0.00 45.00 1.40
192 193 7.011669 CGAAATAATGTTGGGGAACGTAGTAAT 59.988 37.037 0.00 0.00 45.00 1.89
193 194 6.313411 CGAAATAATGTTGGGGAACGTAGTAA 59.687 38.462 0.00 0.00 45.00 2.24
194 195 5.811613 CGAAATAATGTTGGGGAACGTAGTA 59.188 40.000 0.00 0.00 45.00 1.82
196 197 4.871557 TCGAAATAATGTTGGGGAACGTAG 59.128 41.667 0.00 0.00 0.00 3.51
197 198 4.630940 GTCGAAATAATGTTGGGGAACGTA 59.369 41.667 0.00 0.00 0.00 3.57
198 199 3.437741 GTCGAAATAATGTTGGGGAACGT 59.562 43.478 0.00 0.00 0.00 3.99
199 200 3.484557 CGTCGAAATAATGTTGGGGAACG 60.485 47.826 0.00 0.00 0.00 3.95
200 201 3.181504 CCGTCGAAATAATGTTGGGGAAC 60.182 47.826 0.00 0.00 0.00 3.62
201 202 3.011119 CCGTCGAAATAATGTTGGGGAA 58.989 45.455 0.00 0.00 0.00 3.97
202 203 2.634600 CCGTCGAAATAATGTTGGGGA 58.365 47.619 0.00 0.00 0.00 4.81
203 204 1.673920 CCCGTCGAAATAATGTTGGGG 59.326 52.381 0.00 0.00 0.00 4.96
204 205 2.634600 TCCCGTCGAAATAATGTTGGG 58.365 47.619 0.00 0.00 36.72 4.12
205 206 4.024893 CAGATCCCGTCGAAATAATGTTGG 60.025 45.833 0.00 0.00 0.00 3.77
206 207 4.808895 TCAGATCCCGTCGAAATAATGTTG 59.191 41.667 0.00 0.00 0.00 3.33
207 208 5.018539 TCAGATCCCGTCGAAATAATGTT 57.981 39.130 0.00 0.00 0.00 2.71
208 209 4.665833 TCAGATCCCGTCGAAATAATGT 57.334 40.909 0.00 0.00 0.00 2.71
209 210 7.834068 ATAATCAGATCCCGTCGAAATAATG 57.166 36.000 0.00 0.00 0.00 1.90
210 211 9.367444 GTTATAATCAGATCCCGTCGAAATAAT 57.633 33.333 0.00 0.00 0.00 1.28
236 237 3.877508 GGAAAGTTTGATCCTATGGGTCG 59.122 47.826 0.00 0.00 32.75 4.79
269 270 7.448748 ACTGAGAATTAGCAAAACCGTAAAT 57.551 32.000 0.00 0.00 0.00 1.40
334 335 9.956797 CTCAATAAAGAAATAAACCAAAATGCG 57.043 29.630 0.00 0.00 0.00 4.73
521 526 4.432712 AGCAAACAAAAATGGACAGACAC 58.567 39.130 0.00 0.00 0.00 3.67
591 598 9.887406 TGTTCTTATCGTTTCCTTCAAAAATAC 57.113 29.630 0.00 0.00 0.00 1.89
607 614 6.554334 TTTCTCCCACTTTTGTTCTTATCG 57.446 37.500 0.00 0.00 0.00 2.92
662 669 5.082059 CCATTTGTCTTTTCTCGATCGTTG 58.918 41.667 15.94 9.60 0.00 4.10
752 759 2.092211 GTCATTCGGCTGACGTAACTTG 59.908 50.000 1.46 0.00 44.69 3.16
775 783 5.820947 CACCTCAGGTTACTAACACTTTGTT 59.179 40.000 0.00 0.00 37.90 2.83
816 826 2.084546 AGCGAAAAGGCACTGGATAAC 58.915 47.619 0.00 0.00 40.86 1.89
829 839 8.506168 AGAGGAATATGTTTATGAAGCGAAAA 57.494 30.769 0.00 0.00 0.00 2.29
843 853 6.216456 AGGAAAAGAGGTGAAGAGGAATATGT 59.784 38.462 0.00 0.00 0.00 2.29
889 899 1.968540 GCCACTGTTGCAGGGTCTC 60.969 63.158 0.00 0.00 32.12 3.36
900 910 1.487976 CATCCTAGGATGTGCCACTGT 59.512 52.381 34.86 6.01 44.93 3.55
923 933 0.529773 TGAATACGGATCCGCTGTGC 60.530 55.000 33.62 18.28 44.19 4.57
946 2187 3.430098 GGAAGAGAGTTCGAGATGTGCAT 60.430 47.826 0.00 0.00 0.00 3.96
969 2210 2.158254 CGATCCACATACCGCATCATTG 59.842 50.000 0.00 0.00 0.00 2.82
1011 2252 9.781633 TGCTTGACTAGTAATAAAGTAAACCAA 57.218 29.630 0.00 0.00 0.00 3.67
1012 2253 9.211485 GTGCTTGACTAGTAATAAAGTAAACCA 57.789 33.333 0.00 0.00 0.00 3.67
1018 2359 5.867716 CGGTGTGCTTGACTAGTAATAAAGT 59.132 40.000 0.00 0.00 0.00 2.66
1021 2362 5.404946 GTCGGTGTGCTTGACTAGTAATAA 58.595 41.667 0.00 0.00 0.00 1.40
1022 2363 4.437794 CGTCGGTGTGCTTGACTAGTAATA 60.438 45.833 0.00 0.00 0.00 0.98
1024 2365 2.351060 CGTCGGTGTGCTTGACTAGTAA 60.351 50.000 0.00 0.00 0.00 2.24
1025 2366 1.198408 CGTCGGTGTGCTTGACTAGTA 59.802 52.381 0.00 0.00 0.00 1.82
1026 2367 0.039437 CGTCGGTGTGCTTGACTAGT 60.039 55.000 0.00 0.00 0.00 2.57
1265 2990 3.077519 GCGTAGGGGATGCTGACGT 62.078 63.158 0.00 0.00 37.09 4.34
1326 3051 1.880221 CGGCAAACATGGTGACCAGTA 60.880 52.381 11.23 0.00 36.75 2.74
1332 3057 1.832883 ATTAGCGGCAAACATGGTGA 58.167 45.000 1.45 0.00 0.00 4.02
1367 3109 1.338973 GTGACCTCAACGTACTCACCA 59.661 52.381 0.00 0.00 0.00 4.17
1407 3169 3.259374 CACATGGAGATAATACGGGAGCT 59.741 47.826 0.00 0.00 0.00 4.09
1412 3174 4.507756 CACACACACATGGAGATAATACGG 59.492 45.833 0.00 0.00 0.00 4.02
1450 3212 1.396543 GAGCTTGCTCGACGTACGTG 61.397 60.000 28.16 17.59 43.13 4.49
1516 3280 1.001406 CCCATGTATCTCCTCGAAGCC 59.999 57.143 0.00 0.00 0.00 4.35
1517 3281 1.689273 ACCCATGTATCTCCTCGAAGC 59.311 52.381 0.00 0.00 0.00 3.86
1535 3299 6.364976 GCACATGGTAAAAACTATGACAAACC 59.635 38.462 8.60 0.00 33.57 3.27
1546 3310 6.843069 ATCAAAAGTGCACATGGTAAAAAC 57.157 33.333 21.04 0.00 0.00 2.43
1607 3381 4.570772 GGTCATACATGTGCAATAACGACT 59.429 41.667 9.11 0.00 0.00 4.18
1629 3408 2.269241 GCTTTCCCAGACTCCCGG 59.731 66.667 0.00 0.00 0.00 5.73
1630 3409 1.376037 GTGCTTTCCCAGACTCCCG 60.376 63.158 0.00 0.00 0.00 5.14
1631 3410 0.035915 GAGTGCTTTCCCAGACTCCC 60.036 60.000 0.00 0.00 30.55 4.30
1632 3411 0.035915 GGAGTGCTTTCCCAGACTCC 60.036 60.000 0.00 0.00 45.82 3.85
1633 3412 0.687354 TGGAGTGCTTTCCCAGACTC 59.313 55.000 4.87 0.00 36.35 3.36
1634 3413 1.366319 ATGGAGTGCTTTCCCAGACT 58.634 50.000 4.87 0.00 36.35 3.24
1635 3414 2.087646 GAATGGAGTGCTTTCCCAGAC 58.912 52.381 4.87 0.00 36.35 3.51
1636 3415 1.704628 TGAATGGAGTGCTTTCCCAGA 59.295 47.619 7.64 0.00 36.35 3.86
1648 3427 3.415212 TGAAGCAGGAACTTGAATGGAG 58.585 45.455 0.00 0.00 34.60 3.86
1667 3447 7.647827 TGTTTCCATTCCTATATTTTCCCTGA 58.352 34.615 0.00 0.00 0.00 3.86
1677 3457 8.893563 AGAATTGGTTTGTTTCCATTCCTATA 57.106 30.769 0.00 0.00 34.75 1.31
1844 3640 2.063774 TCCGTGGGGGACTCTTTTC 58.936 57.895 0.00 0.00 40.94 2.29
1874 3670 5.186797 ACCTCAAGTTGTTTCCATTTGACAA 59.813 36.000 2.11 0.00 0.00 3.18
1901 3697 5.675538 AGATGGTAATTTGAGCAGACCTAC 58.324 41.667 0.00 0.00 0.00 3.18
1918 3714 0.321653 GTGGCGAACTGGAAGATGGT 60.322 55.000 0.00 0.00 37.43 3.55
1975 3771 4.752604 TGCACAATGAACTTACGTGTACAT 59.247 37.500 0.00 0.00 0.00 2.29
1978 3774 5.051153 TCTTGCACAATGAACTTACGTGTA 58.949 37.500 0.00 0.00 0.00 2.90
2025 3821 9.825972 CAAATTTTCGTTGATGTACTCACTAAT 57.174 29.630 0.00 0.00 32.17 1.73
2033 3829 7.758495 AGTATCCCAAATTTTCGTTGATGTAC 58.242 34.615 0.00 0.00 0.00 2.90
2038 3834 6.657117 TCATGAGTATCCCAAATTTTCGTTGA 59.343 34.615 0.00 0.00 0.00 3.18
2039 3835 6.851609 TCATGAGTATCCCAAATTTTCGTTG 58.148 36.000 0.00 0.00 0.00 4.10
2053 3849 9.197694 GTACTTACCATCACAATCATGAGTATC 57.802 37.037 0.09 0.00 30.46 2.24
2125 3928 3.578282 TGTCCAGTTGTAGATGCTCTGAA 59.422 43.478 0.00 0.00 0.00 3.02
2129 3932 2.622436 GGTGTCCAGTTGTAGATGCTC 58.378 52.381 0.00 0.00 0.00 4.26
2143 3946 4.603946 GGCGGCTATCGGGTGTCC 62.604 72.222 0.00 0.00 39.69 4.02
2184 3987 4.436998 CTCGTCCGGGCACTGTCC 62.437 72.222 6.96 0.00 0.00 4.02
2185 3988 2.710724 AAACTCGTCCGGGCACTGTC 62.711 60.000 6.96 0.00 0.00 3.51
2186 3989 2.319890 AAAACTCGTCCGGGCACTGT 62.320 55.000 6.96 0.00 0.00 3.55
2187 3990 1.597027 AAAACTCGTCCGGGCACTG 60.597 57.895 6.96 0.00 0.00 3.66
2188 3991 1.597027 CAAAACTCGTCCGGGCACT 60.597 57.895 6.96 0.00 0.00 4.40
2189 3992 2.613506 CCAAAACTCGTCCGGGCAC 61.614 63.158 6.96 0.00 0.00 5.01
2190 3993 2.281208 CCAAAACTCGTCCGGGCA 60.281 61.111 6.96 0.00 0.00 5.36
2191 3994 3.733960 GCCAAAACTCGTCCGGGC 61.734 66.667 0.00 0.00 0.00 6.13
2192 3995 3.053896 GGCCAAAACTCGTCCGGG 61.054 66.667 0.00 0.00 0.00 5.73
2193 3996 2.281208 TGGCCAAAACTCGTCCGG 60.281 61.111 0.61 0.00 0.00 5.14
2194 3997 2.613506 GGTGGCCAAAACTCGTCCG 61.614 63.158 7.24 0.00 0.00 4.79
2195 3998 1.104577 TTGGTGGCCAAAACTCGTCC 61.105 55.000 7.24 1.47 40.92 4.79
2196 3999 2.410466 TTGGTGGCCAAAACTCGTC 58.590 52.632 7.24 0.00 40.92 4.20
2197 4000 4.668151 TTGGTGGCCAAAACTCGT 57.332 50.000 7.24 0.00 40.92 4.18
2204 4007 2.841988 GCCTGGTTTGGTGGCCAA 60.842 61.111 7.24 0.00 42.29 4.52
2205 4008 4.149019 TGCCTGGTTTGGTGGCCA 62.149 61.111 0.00 0.00 45.56 5.36
2206 4009 3.615709 GTGCCTGGTTTGGTGGCC 61.616 66.667 0.00 0.00 45.56 5.36
2207 4010 3.615709 GGTGCCTGGTTTGGTGGC 61.616 66.667 0.00 0.00 46.26 5.01
2208 4011 2.917227 GGGTGCCTGGTTTGGTGG 60.917 66.667 0.00 0.00 0.00 4.61
2209 4012 2.917227 GGGGTGCCTGGTTTGGTG 60.917 66.667 0.00 0.00 0.00 4.17
2210 4013 1.439524 TATGGGGTGCCTGGTTTGGT 61.440 55.000 0.00 0.00 0.00 3.67
2211 4014 0.970427 GTATGGGGTGCCTGGTTTGG 60.970 60.000 0.00 0.00 0.00 3.28
2212 4015 0.970427 GGTATGGGGTGCCTGGTTTG 60.970 60.000 0.00 0.00 0.00 2.93
2213 4016 1.146544 AGGTATGGGGTGCCTGGTTT 61.147 55.000 0.00 0.00 41.91 3.27
2214 4017 1.543896 AGGTATGGGGTGCCTGGTT 60.544 57.895 0.00 0.00 41.91 3.67
2215 4018 2.127297 AGGTATGGGGTGCCTGGT 59.873 61.111 0.00 0.00 41.91 4.00
2235 4038 1.736696 CGATTTGTCCAGGCATTTGGC 60.737 52.381 0.00 0.00 43.74 4.52
2236 4039 1.135024 CCGATTTGTCCAGGCATTTGG 60.135 52.381 0.00 0.00 39.70 3.28
2237 4040 2.282701 CCGATTTGTCCAGGCATTTG 57.717 50.000 0.00 0.00 0.00 2.32
2243 4046 0.740737 GGAATGCCGATTTGTCCAGG 59.259 55.000 0.00 0.00 0.00 4.45
2244 4047 0.740737 GGGAATGCCGATTTGTCCAG 59.259 55.000 0.00 0.00 33.83 3.86
2245 4048 0.682855 GGGGAATGCCGATTTGTCCA 60.683 55.000 0.00 0.00 33.83 4.02
2246 4049 0.682855 TGGGGAATGCCGATTTGTCC 60.683 55.000 0.00 0.00 33.83 4.02
2247 4050 1.402787 ATGGGGAATGCCGATTTGTC 58.597 50.000 0.00 0.00 33.83 3.18
2248 4051 2.746279 TATGGGGAATGCCGATTTGT 57.254 45.000 0.00 0.00 33.83 2.83
2249 4052 2.493278 GGATATGGGGAATGCCGATTTG 59.507 50.000 0.00 0.00 33.83 2.32
2250 4053 2.807676 GGATATGGGGAATGCCGATTT 58.192 47.619 0.00 0.00 33.83 2.17
2251 4054 1.340017 CGGATATGGGGAATGCCGATT 60.340 52.381 0.00 0.00 38.89 3.34
2252 4055 0.253044 CGGATATGGGGAATGCCGAT 59.747 55.000 0.00 0.00 38.89 4.18
2253 4056 1.676968 CGGATATGGGGAATGCCGA 59.323 57.895 0.00 0.00 38.89 5.54
2254 4057 1.377202 CCGGATATGGGGAATGCCG 60.377 63.158 0.00 0.00 37.32 5.69
2255 4058 1.678970 GCCGGATATGGGGAATGCC 60.679 63.158 5.05 0.00 0.00 4.40
2256 4059 1.678970 GGCCGGATATGGGGAATGC 60.679 63.158 5.05 0.00 0.00 3.56
2257 4060 1.000896 GGGCCGGATATGGGGAATG 60.001 63.158 5.05 0.00 0.00 2.67
2258 4061 0.776080 AAGGGCCGGATATGGGGAAT 60.776 55.000 5.05 0.00 0.00 3.01
2259 4062 0.104356 TAAGGGCCGGATATGGGGAA 60.104 55.000 5.05 0.00 0.00 3.97
2260 4063 0.120377 ATAAGGGCCGGATATGGGGA 59.880 55.000 5.05 0.00 0.00 4.81
2261 4064 1.887797 TATAAGGGCCGGATATGGGG 58.112 55.000 5.05 0.00 0.00 4.96
2262 4065 2.106511 CCATATAAGGGCCGGATATGGG 59.893 54.545 32.12 21.61 44.70 4.00
2263 4066 2.106511 CCCATATAAGGGCCGGATATGG 59.893 54.545 32.46 32.46 46.62 2.74
2264 4067 3.492102 CCCATATAAGGGCCGGATATG 57.508 52.381 23.45 23.45 43.10 1.78
2274 4077 4.788075 TCCACATATCCACCCCATATAAGG 59.212 45.833 0.00 0.00 0.00 2.69
2275 4078 5.104360 CCTCCACATATCCACCCCATATAAG 60.104 48.000 0.00 0.00 0.00 1.73
2276 4079 4.788075 CCTCCACATATCCACCCCATATAA 59.212 45.833 0.00 0.00 0.00 0.98
2277 4080 4.370776 CCTCCACATATCCACCCCATATA 58.629 47.826 0.00 0.00 0.00 0.86
2278 4081 3.192944 CCTCCACATATCCACCCCATAT 58.807 50.000 0.00 0.00 0.00 1.78
2279 4082 2.631384 CCTCCACATATCCACCCCATA 58.369 52.381 0.00 0.00 0.00 2.74
2280 4083 1.449271 CCTCCACATATCCACCCCAT 58.551 55.000 0.00 0.00 0.00 4.00
2281 4084 1.352622 GCCTCCACATATCCACCCCA 61.353 60.000 0.00 0.00 0.00 4.96
2282 4085 1.456287 GCCTCCACATATCCACCCC 59.544 63.158 0.00 0.00 0.00 4.95
2283 4086 1.456287 GGCCTCCACATATCCACCC 59.544 63.158 0.00 0.00 0.00 4.61
2284 4087 1.456287 GGGCCTCCACATATCCACC 59.544 63.158 0.84 0.00 0.00 4.61
2285 4088 1.071471 CGGGCCTCCACATATCCAC 59.929 63.158 0.84 0.00 0.00 4.02
2286 4089 2.146724 CCGGGCCTCCACATATCCA 61.147 63.158 0.84 0.00 0.00 3.41
2287 4090 1.841556 TCCGGGCCTCCACATATCC 60.842 63.158 0.84 0.00 0.00 2.59
2288 4091 1.371558 GTCCGGGCCTCCACATATC 59.628 63.158 0.84 0.00 0.00 1.63
2289 4092 2.507854 CGTCCGGGCCTCCACATAT 61.508 63.158 0.00 0.00 0.00 1.78
2290 4093 3.151710 CGTCCGGGCCTCCACATA 61.152 66.667 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.