Multiple sequence alignment - TraesCS3D01G049100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G049100 chr3D 100.000 3593 0 0 1 3593 18844753 18848345 0.000000e+00 6636.0
1 TraesCS3D01G049100 chr3D 86.618 1659 171 28 1100 2730 18908434 18910069 0.000000e+00 1786.0
2 TraesCS3D01G049100 chr3D 97.177 744 19 2 2852 3593 245047046 245046303 0.000000e+00 1256.0
3 TraesCS3D01G049100 chr3D 96.770 743 23 1 2852 3593 18862857 18863599 0.000000e+00 1238.0
4 TraesCS3D01G049100 chr3D 96.366 743 25 2 2852 3593 117504816 117504075 0.000000e+00 1221.0
5 TraesCS3D01G049100 chr3D 84.328 134 20 1 943 1075 18742107 18742240 2.910000e-26 130.0
6 TraesCS3D01G049100 chr3D 93.103 87 6 0 557 643 8368240 8368154 1.050000e-25 128.0
7 TraesCS3D01G049100 chr3D 81.955 133 24 0 943 1075 18908239 18908371 2.930000e-21 113.0
8 TraesCS3D01G049100 chr3B 95.396 1694 76 1 1160 2851 29997670 29995977 0.000000e+00 2695.0
9 TraesCS3D01G049100 chr3B 95.666 1269 52 2 1585 2851 29460286 29459019 0.000000e+00 2036.0
10 TraesCS3D01G049100 chr3B 89.076 1547 147 8 1306 2849 75523209 75521682 0.000000e+00 1901.0
11 TraesCS3D01G049100 chr3B 86.880 1532 181 14 1316 2840 29781943 29783461 0.000000e+00 1698.0
12 TraesCS3D01G049100 chr3B 86.610 1531 182 16 1318 2840 30207332 30208847 0.000000e+00 1670.0
13 TraesCS3D01G049100 chr3B 93.405 743 48 1 846 1587 29477344 29476602 0.000000e+00 1099.0
14 TraesCS3D01G049100 chr3B 93.249 237 15 1 888 1124 29997902 29997667 7.380000e-92 348.0
15 TraesCS3D01G049100 chr3B 89.024 82 9 0 989 1070 30067521 30067440 6.350000e-18 102.0
16 TraesCS3D01G049100 chr3B 80.597 134 21 5 943 1075 29628012 29628141 8.210000e-17 99.0
17 TraesCS3D01G049100 chr3A 88.591 2086 169 28 798 2840 26232565 26234624 0.000000e+00 2470.0
18 TraesCS3D01G049100 chr3A 86.111 1548 196 14 1301 2840 26481447 26482983 0.000000e+00 1650.0
19 TraesCS3D01G049100 chr3A 86.540 1471 176 13 1311 2773 26261542 26262998 0.000000e+00 1600.0
20 TraesCS3D01G049100 chr3A 87.444 223 27 1 565 786 17734979 17735201 4.600000e-64 255.0
21 TraesCS3D01G049100 chr3A 85.841 226 28 4 565 786 714358032 714357807 1.670000e-58 237.0
22 TraesCS3D01G049100 chr3A 85.268 224 25 4 565 786 24052139 24052356 1.300000e-54 224.0
23 TraesCS3D01G049100 chr3A 84.328 134 20 1 943 1075 26205177 26205310 2.910000e-26 130.0
24 TraesCS3D01G049100 chr3A 84.211 133 20 1 943 1075 26010030 26009899 1.050000e-25 128.0
25 TraesCS3D01G049100 chr3A 86.957 69 9 0 18 86 28884590 28884522 1.070000e-10 78.7
26 TraesCS3D01G049100 chr4D 96.644 745 22 2 2852 3593 196254107 196254851 0.000000e+00 1234.0
27 TraesCS3D01G049100 chr4D 96.501 743 23 3 2852 3593 262845356 262846096 0.000000e+00 1225.0
28 TraesCS3D01G049100 chr6D 96.635 743 23 2 2852 3593 386887671 386888412 0.000000e+00 1232.0
29 TraesCS3D01G049100 chr6D 96.501 743 24 2 2852 3593 273238748 273238007 0.000000e+00 1227.0
30 TraesCS3D01G049100 chr6D 80.131 458 54 17 1 433 464668149 464667704 1.250000e-79 307.0
31 TraesCS3D01G049100 chr7D 96.505 744 24 2 2852 3593 152754342 152755085 0.000000e+00 1229.0
32 TraesCS3D01G049100 chr5D 96.366 743 26 1 2852 3593 206646541 206645799 0.000000e+00 1221.0
33 TraesCS3D01G049100 chr5D 84.161 423 56 7 10 421 484158120 484157698 2.010000e-107 399.0
34 TraesCS3D01G049100 chrUn 82.472 445 66 11 1 436 83198536 83198977 2.620000e-101 379.0
35 TraesCS3D01G049100 chrUn 82.472 445 66 11 1 436 83204629 83205070 2.620000e-101 379.0
36 TraesCS3D01G049100 chrUn 81.897 464 70 12 1 455 305294442 305293984 2.620000e-101 379.0
37 TraesCS3D01G049100 chrUn 81.466 464 72 12 1 455 83163476 83163934 5.670000e-98 368.0
38 TraesCS3D01G049100 chrUn 83.459 133 18 3 943 1075 37328135 37328263 1.750000e-23 121.0
39 TraesCS3D01G049100 chr7A 82.183 449 68 11 1 440 695161437 695160992 3.390000e-100 375.0
40 TraesCS3D01G049100 chr7A 92.763 152 11 0 646 797 123263000 123262849 1.680000e-53 220.0
41 TraesCS3D01G049100 chr2B 79.828 466 60 14 5 438 184799383 184799846 3.480000e-80 309.0
42 TraesCS3D01G049100 chr2B 86.364 220 25 4 582 800 753837924 753838139 6.000000e-58 235.0
43 TraesCS3D01G049100 chr1B 86.784 227 23 3 565 786 8601737 8601961 2.770000e-61 246.0
44 TraesCS3D01G049100 chr4A 81.759 307 39 6 1 290 605010585 605010891 1.290000e-59 241.0
45 TraesCS3D01G049100 chr4A 85.470 234 23 7 565 789 554638910 554638679 2.160000e-57 233.0
46 TraesCS3D01G049100 chr4A 91.667 156 11 2 646 800 733828291 733828137 7.810000e-52 215.0
47 TraesCS3D01G049100 chr5A 84.581 227 27 3 565 784 68611573 68611348 6.040000e-53 219.0
48 TraesCS3D01G049100 chr2A 95.062 81 4 0 565 645 729555244 729555164 1.050000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G049100 chr3D 18844753 18848345 3592 False 6636.0 6636 100.0000 1 3593 1 chr3D.!!$F2 3592
1 TraesCS3D01G049100 chr3D 245046303 245047046 743 True 1256.0 1256 97.1770 2852 3593 1 chr3D.!!$R3 741
2 TraesCS3D01G049100 chr3D 18862857 18863599 742 False 1238.0 1238 96.7700 2852 3593 1 chr3D.!!$F3 741
3 TraesCS3D01G049100 chr3D 117504075 117504816 741 True 1221.0 1221 96.3660 2852 3593 1 chr3D.!!$R2 741
4 TraesCS3D01G049100 chr3D 18908239 18910069 1830 False 949.5 1786 84.2865 943 2730 2 chr3D.!!$F4 1787
5 TraesCS3D01G049100 chr3B 29459019 29460286 1267 True 2036.0 2036 95.6660 1585 2851 1 chr3B.!!$R1 1266
6 TraesCS3D01G049100 chr3B 75521682 75523209 1527 True 1901.0 1901 89.0760 1306 2849 1 chr3B.!!$R4 1543
7 TraesCS3D01G049100 chr3B 29781943 29783461 1518 False 1698.0 1698 86.8800 1316 2840 1 chr3B.!!$F2 1524
8 TraesCS3D01G049100 chr3B 30207332 30208847 1515 False 1670.0 1670 86.6100 1318 2840 1 chr3B.!!$F3 1522
9 TraesCS3D01G049100 chr3B 29995977 29997902 1925 True 1521.5 2695 94.3225 888 2851 2 chr3B.!!$R5 1963
10 TraesCS3D01G049100 chr3B 29476602 29477344 742 True 1099.0 1099 93.4050 846 1587 1 chr3B.!!$R2 741
11 TraesCS3D01G049100 chr3A 26232565 26234624 2059 False 2470.0 2470 88.5910 798 2840 1 chr3A.!!$F4 2042
12 TraesCS3D01G049100 chr3A 26481447 26482983 1536 False 1650.0 1650 86.1110 1301 2840 1 chr3A.!!$F6 1539
13 TraesCS3D01G049100 chr3A 26261542 26262998 1456 False 1600.0 1600 86.5400 1311 2773 1 chr3A.!!$F5 1462
14 TraesCS3D01G049100 chr4D 196254107 196254851 744 False 1234.0 1234 96.6440 2852 3593 1 chr4D.!!$F1 741
15 TraesCS3D01G049100 chr4D 262845356 262846096 740 False 1225.0 1225 96.5010 2852 3593 1 chr4D.!!$F2 741
16 TraesCS3D01G049100 chr6D 386887671 386888412 741 False 1232.0 1232 96.6350 2852 3593 1 chr6D.!!$F1 741
17 TraesCS3D01G049100 chr6D 273238007 273238748 741 True 1227.0 1227 96.5010 2852 3593 1 chr6D.!!$R1 741
18 TraesCS3D01G049100 chr7D 152754342 152755085 743 False 1229.0 1229 96.5050 2852 3593 1 chr7D.!!$F1 741
19 TraesCS3D01G049100 chr5D 206645799 206646541 742 True 1221.0 1221 96.3660 2852 3593 1 chr5D.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 738 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2736 2827 0.46362 GGCTGCTCTTGACTCTAGGG 59.536 60.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.524569 GCTTCAGGCTGACTATCTCC 57.475 55.000 18.55 0.00 38.06 3.71
21 22 1.269517 GCTTCAGGCTGACTATCTCCG 60.270 57.143 18.55 0.00 38.06 4.63
22 23 1.339610 CTTCAGGCTGACTATCTCCGG 59.660 57.143 18.55 0.00 0.00 5.14
23 24 0.259065 TCAGGCTGACTATCTCCGGT 59.741 55.000 14.43 0.00 0.00 5.28
24 25 0.387202 CAGGCTGACTATCTCCGGTG 59.613 60.000 9.42 0.00 0.00 4.94
25 26 0.259065 AGGCTGACTATCTCCGGTGA 59.741 55.000 8.96 8.96 0.00 4.02
26 27 1.112113 GGCTGACTATCTCCGGTGAA 58.888 55.000 10.77 0.00 0.00 3.18
27 28 1.067821 GGCTGACTATCTCCGGTGAAG 59.932 57.143 10.77 11.31 0.00 3.02
28 29 1.067821 GCTGACTATCTCCGGTGAAGG 59.932 57.143 10.77 8.68 0.00 3.46
29 30 2.656002 CTGACTATCTCCGGTGAAGGA 58.344 52.381 10.77 0.00 38.80 3.36
75 76 4.144703 GGAGCCCCCGACGTTCTC 62.145 72.222 0.00 0.00 0.00 2.87
76 77 3.379445 GAGCCCCCGACGTTCTCA 61.379 66.667 0.00 0.00 0.00 3.27
77 78 2.683933 AGCCCCCGACGTTCTCAT 60.684 61.111 0.00 0.00 0.00 2.90
78 79 2.511600 GCCCCCGACGTTCTCATG 60.512 66.667 0.00 0.00 0.00 3.07
79 80 3.014085 GCCCCCGACGTTCTCATGA 62.014 63.158 0.00 0.00 0.00 3.07
80 81 1.823295 CCCCCGACGTTCTCATGAT 59.177 57.895 0.00 0.00 0.00 2.45
81 82 0.530650 CCCCCGACGTTCTCATGATG 60.531 60.000 0.00 0.00 0.00 3.07
82 83 1.154205 CCCCGACGTTCTCATGATGC 61.154 60.000 0.00 0.00 0.00 3.91
83 84 1.482621 CCCGACGTTCTCATGATGCG 61.483 60.000 0.00 4.02 0.00 4.73
84 85 1.482621 CCGACGTTCTCATGATGCGG 61.483 60.000 14.93 9.82 0.00 5.69
85 86 1.482621 CGACGTTCTCATGATGCGGG 61.483 60.000 14.93 5.95 0.00 6.13
86 87 0.460284 GACGTTCTCATGATGCGGGT 60.460 55.000 14.93 3.34 0.00 5.28
87 88 0.460284 ACGTTCTCATGATGCGGGTC 60.460 55.000 14.93 0.00 0.00 4.46
88 89 1.482621 CGTTCTCATGATGCGGGTCG 61.483 60.000 0.00 0.00 0.00 4.79
89 90 0.179111 GTTCTCATGATGCGGGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
90 91 0.752658 TTCTCATGATGCGGGTCGAT 59.247 50.000 0.00 0.00 0.00 3.59
91 92 0.315251 TCTCATGATGCGGGTCGATC 59.685 55.000 0.00 0.00 0.00 3.69
92 93 0.668706 CTCATGATGCGGGTCGATCC 60.669 60.000 4.00 4.00 0.00 3.36
101 102 3.866582 GGTCGATCCCAGGGGCAG 61.867 72.222 5.33 0.00 34.68 4.85
102 103 4.554036 GTCGATCCCAGGGGCAGC 62.554 72.222 5.33 0.00 34.68 5.25
105 106 4.201122 GATCCCAGGGGCAGCCTG 62.201 72.222 12.43 1.98 34.68 4.85
115 116 2.882876 GCAGCCTGCCATTGACAG 59.117 61.111 5.06 0.00 37.42 3.51
120 121 3.895025 CTGCCATTGACAGGACGG 58.105 61.111 0.00 0.00 0.00 4.79
121 122 1.003355 CTGCCATTGACAGGACGGT 60.003 57.895 0.00 0.00 0.00 4.83
122 123 0.249120 CTGCCATTGACAGGACGGTA 59.751 55.000 0.00 0.00 0.00 4.02
123 124 0.036765 TGCCATTGACAGGACGGTAC 60.037 55.000 0.00 0.00 0.00 3.34
124 125 0.036765 GCCATTGACAGGACGGTACA 60.037 55.000 0.00 0.00 0.00 2.90
125 126 1.406887 GCCATTGACAGGACGGTACAT 60.407 52.381 0.00 0.00 0.00 2.29
126 127 2.279741 CCATTGACAGGACGGTACATG 58.720 52.381 0.00 0.00 0.00 3.21
127 128 2.093711 CCATTGACAGGACGGTACATGA 60.094 50.000 0.00 0.00 0.00 3.07
128 129 3.432186 CCATTGACAGGACGGTACATGAT 60.432 47.826 0.00 0.00 0.00 2.45
129 130 4.202212 CCATTGACAGGACGGTACATGATA 60.202 45.833 0.00 0.00 0.00 2.15
130 131 5.511373 CCATTGACAGGACGGTACATGATAT 60.511 44.000 0.00 0.00 0.00 1.63
131 132 4.848562 TGACAGGACGGTACATGATATC 57.151 45.455 0.00 0.00 0.00 1.63
132 133 4.211920 TGACAGGACGGTACATGATATCA 58.788 43.478 8.10 8.10 0.00 2.15
133 134 4.278419 TGACAGGACGGTACATGATATCAG 59.722 45.833 11.78 6.15 0.00 2.90
134 135 3.005897 ACAGGACGGTACATGATATCAGC 59.994 47.826 11.78 1.72 0.00 4.26
135 136 3.256879 CAGGACGGTACATGATATCAGCT 59.743 47.826 11.78 1.04 0.00 4.24
136 137 4.459337 CAGGACGGTACATGATATCAGCTA 59.541 45.833 11.78 0.07 0.00 3.32
137 138 4.702612 AGGACGGTACATGATATCAGCTAG 59.297 45.833 11.78 3.93 0.00 3.42
138 139 4.459685 GGACGGTACATGATATCAGCTAGT 59.540 45.833 11.78 9.32 0.00 2.57
139 140 5.378292 ACGGTACATGATATCAGCTAGTG 57.622 43.478 11.78 6.63 0.00 2.74
140 141 4.169508 CGGTACATGATATCAGCTAGTGC 58.830 47.826 11.78 9.93 40.05 4.40
141 142 4.169508 GGTACATGATATCAGCTAGTGCG 58.830 47.826 11.78 0.00 45.42 5.34
142 143 3.309961 ACATGATATCAGCTAGTGCGG 57.690 47.619 11.78 0.00 45.42 5.69
143 144 1.998315 CATGATATCAGCTAGTGCGGC 59.002 52.381 11.78 0.00 45.42 6.53
144 145 0.318441 TGATATCAGCTAGTGCGGCC 59.682 55.000 0.00 0.00 45.42 6.13
145 146 0.390472 GATATCAGCTAGTGCGGCCC 60.390 60.000 0.00 0.00 45.42 5.80
146 147 2.159819 ATATCAGCTAGTGCGGCCCG 62.160 60.000 0.00 0.00 45.42 6.13
164 165 2.838225 CCCGTAGCCCGACTGGAT 60.838 66.667 0.00 0.00 39.56 3.41
165 166 2.728817 CCGTAGCCCGACTGGATC 59.271 66.667 0.00 0.00 39.56 3.36
166 167 2.728817 CGTAGCCCGACTGGATCC 59.271 66.667 4.20 4.20 39.56 3.36
167 168 2.125326 CGTAGCCCGACTGGATCCA 61.125 63.158 15.27 15.27 39.56 3.41
169 170 0.755698 GTAGCCCGACTGGATCCAGA 60.756 60.000 41.91 19.56 46.30 3.86
170 171 0.188587 TAGCCCGACTGGATCCAGAT 59.811 55.000 41.91 27.70 46.30 2.90
171 172 1.118356 AGCCCGACTGGATCCAGATC 61.118 60.000 41.91 31.46 46.30 2.75
172 173 1.662608 CCCGACTGGATCCAGATCG 59.337 63.158 41.91 37.84 46.30 3.69
174 175 1.662608 CGACTGGATCCAGATCGGG 59.337 63.158 41.91 23.07 46.30 5.14
175 176 1.109920 CGACTGGATCCAGATCGGGT 61.110 60.000 41.91 23.42 46.30 5.28
176 177 0.390860 GACTGGATCCAGATCGGGTG 59.609 60.000 41.91 18.90 46.30 4.61
177 178 1.070445 CTGGATCCAGATCGGGTGC 59.930 63.158 34.54 6.60 46.30 5.01
178 179 2.388890 CTGGATCCAGATCGGGTGCC 62.389 65.000 34.54 13.81 46.30 5.01
179 180 2.427753 GATCCAGATCGGGTGCCC 59.572 66.667 11.92 0.00 34.36 5.36
180 181 2.040464 ATCCAGATCGGGTGCCCT 60.040 61.111 11.92 0.00 34.36 5.19
181 182 1.694169 ATCCAGATCGGGTGCCCTT 60.694 57.895 11.92 0.00 34.36 3.95
182 183 1.987807 ATCCAGATCGGGTGCCCTTG 61.988 60.000 11.92 0.00 34.36 3.61
183 184 2.825836 CAGATCGGGTGCCCTTGC 60.826 66.667 5.64 0.00 38.26 4.01
184 185 4.115199 AGATCGGGTGCCCTTGCC 62.115 66.667 5.64 0.00 36.33 4.52
185 186 4.424711 GATCGGGTGCCCTTGCCA 62.425 66.667 5.64 0.00 36.33 4.92
186 187 4.740822 ATCGGGTGCCCTTGCCAC 62.741 66.667 5.64 0.00 36.33 5.01
208 209 4.373116 GCTGGACCTGTCGCCGAA 62.373 66.667 0.00 0.00 0.00 4.30
209 210 2.432628 CTGGACCTGTCGCCGAAC 60.433 66.667 0.00 0.00 0.00 3.95
210 211 3.220999 CTGGACCTGTCGCCGAACA 62.221 63.158 0.00 0.00 0.00 3.18
211 212 2.737376 GGACCTGTCGCCGAACAC 60.737 66.667 0.00 0.00 0.00 3.32
212 213 2.737376 GACCTGTCGCCGAACACC 60.737 66.667 0.00 0.00 0.00 4.16
213 214 4.657824 ACCTGTCGCCGAACACCG 62.658 66.667 0.00 0.00 38.18 4.94
232 233 4.954970 CTGCCCCGCACCACTGTT 62.955 66.667 0.00 0.00 33.79 3.16
233 234 4.947147 TGCCCCGCACCACTGTTC 62.947 66.667 0.00 0.00 31.71 3.18
234 235 4.643387 GCCCCGCACCACTGTTCT 62.643 66.667 0.00 0.00 0.00 3.01
235 236 3.065306 CCCCGCACCACTGTTCTA 58.935 61.111 0.00 0.00 0.00 2.10
236 237 1.079127 CCCCGCACCACTGTTCTAG 60.079 63.158 0.00 0.00 0.00 2.43
237 238 1.541310 CCCCGCACCACTGTTCTAGA 61.541 60.000 0.00 0.00 0.00 2.43
238 239 0.537188 CCCGCACCACTGTTCTAGAT 59.463 55.000 0.00 0.00 0.00 1.98
239 240 1.471676 CCCGCACCACTGTTCTAGATC 60.472 57.143 0.00 0.00 0.00 2.75
240 241 1.478510 CCGCACCACTGTTCTAGATCT 59.521 52.381 0.00 0.00 0.00 2.75
241 242 2.688446 CCGCACCACTGTTCTAGATCTA 59.312 50.000 1.69 1.69 0.00 1.98
242 243 3.243234 CCGCACCACTGTTCTAGATCTAG 60.243 52.174 21.81 21.81 34.56 2.43
243 244 3.712187 GCACCACTGTTCTAGATCTAGC 58.288 50.000 22.81 11.77 33.32 3.42
244 245 3.491792 GCACCACTGTTCTAGATCTAGCC 60.492 52.174 22.81 16.05 33.32 3.93
245 246 3.701542 CACCACTGTTCTAGATCTAGCCA 59.298 47.826 22.81 19.12 33.32 4.75
246 247 4.343526 CACCACTGTTCTAGATCTAGCCAT 59.656 45.833 22.81 10.13 33.32 4.40
247 248 4.586841 ACCACTGTTCTAGATCTAGCCATC 59.413 45.833 22.81 13.30 33.32 3.51
248 249 4.320861 CCACTGTTCTAGATCTAGCCATCG 60.321 50.000 22.81 13.28 33.32 3.84
249 250 3.254657 ACTGTTCTAGATCTAGCCATCGC 59.745 47.826 22.81 10.25 33.32 4.58
250 251 2.226674 TGTTCTAGATCTAGCCATCGCG 59.773 50.000 22.81 0.00 41.18 5.87
251 252 1.454201 TCTAGATCTAGCCATCGCGG 58.546 55.000 22.81 0.00 41.18 6.46
252 253 1.003233 TCTAGATCTAGCCATCGCGGA 59.997 52.381 22.81 2.02 41.18 5.54
253 254 1.131504 CTAGATCTAGCCATCGCGGAC 59.868 57.143 16.68 0.00 41.18 4.79
254 255 1.080434 GATCTAGCCATCGCGGACC 60.080 63.158 6.13 0.00 41.18 4.46
255 256 2.804368 GATCTAGCCATCGCGGACCG 62.804 65.000 10.29 10.29 41.18 4.79
268 269 4.736896 GACCGCCACCGTCCTGAC 62.737 72.222 0.00 0.00 0.00 3.51
272 273 3.998672 GCCACCGTCCTGACCGAA 61.999 66.667 0.00 0.00 0.00 4.30
273 274 2.978824 CCACCGTCCTGACCGAAT 59.021 61.111 0.00 0.00 0.00 3.34
274 275 1.153628 CCACCGTCCTGACCGAATC 60.154 63.158 0.00 0.00 0.00 2.52
275 276 1.516386 CACCGTCCTGACCGAATCG 60.516 63.158 0.00 0.00 0.00 3.34
276 277 1.975407 ACCGTCCTGACCGAATCGT 60.975 57.895 0.82 0.00 0.00 3.73
277 278 1.214589 CCGTCCTGACCGAATCGTT 59.785 57.895 0.82 0.00 0.00 3.85
278 279 1.076533 CCGTCCTGACCGAATCGTTG 61.077 60.000 0.82 0.00 0.00 4.10
279 280 1.076533 CGTCCTGACCGAATCGTTGG 61.077 60.000 0.82 0.00 0.00 3.77
280 281 1.079405 TCCTGACCGAATCGTTGGC 60.079 57.895 0.82 0.00 0.00 4.52
281 282 2.106683 CCTGACCGAATCGTTGGCC 61.107 63.158 0.82 0.00 0.00 5.36
282 283 2.433491 TGACCGAATCGTTGGCCG 60.433 61.111 0.82 0.00 38.13 6.13
290 291 3.462169 TCGTTGGCCGAGGAGAAA 58.538 55.556 11.49 0.00 41.60 2.52
291 292 1.005394 TCGTTGGCCGAGGAGAAAC 60.005 57.895 11.49 0.40 41.60 2.78
292 293 2.380410 CGTTGGCCGAGGAGAAACG 61.380 63.158 6.88 7.36 39.56 3.60
293 294 2.358247 TTGGCCGAGGAGAAACGC 60.358 61.111 0.00 0.00 0.00 4.84
294 295 3.894547 TTGGCCGAGGAGAAACGCC 62.895 63.158 0.00 0.00 0.00 5.68
295 296 4.388499 GGCCGAGGAGAAACGCCA 62.388 66.667 0.00 0.00 0.00 5.69
296 297 3.119096 GCCGAGGAGAAACGCCAC 61.119 66.667 0.00 0.00 0.00 5.01
297 298 2.434359 CCGAGGAGAAACGCCACC 60.434 66.667 0.00 0.00 0.00 4.61
298 299 2.342279 CGAGGAGAAACGCCACCA 59.658 61.111 0.00 0.00 0.00 4.17
299 300 2.027625 CGAGGAGAAACGCCACCAC 61.028 63.158 0.00 0.00 0.00 4.16
300 301 1.371558 GAGGAGAAACGCCACCACT 59.628 57.895 0.00 0.00 0.00 4.00
301 302 0.951040 GAGGAGAAACGCCACCACTG 60.951 60.000 0.00 0.00 0.00 3.66
302 303 2.617274 GGAGAAACGCCACCACTGC 61.617 63.158 0.00 0.00 0.00 4.40
311 312 4.415150 CACCACTGCGGCTCCCAT 62.415 66.667 0.00 0.00 39.03 4.00
312 313 4.415150 ACCACTGCGGCTCCCATG 62.415 66.667 0.00 0.00 39.03 3.66
314 315 4.790962 CACTGCGGCTCCCATGCT 62.791 66.667 0.00 0.00 0.00 3.79
315 316 4.039092 ACTGCGGCTCCCATGCTT 62.039 61.111 0.00 0.00 0.00 3.91
316 317 2.753043 CTGCGGCTCCCATGCTTT 60.753 61.111 0.00 0.00 0.00 3.51
317 318 3.060020 CTGCGGCTCCCATGCTTTG 62.060 63.158 0.00 0.00 0.00 2.77
318 319 4.503314 GCGGCTCCCATGCTTTGC 62.503 66.667 0.00 0.00 0.00 3.68
319 320 3.830192 CGGCTCCCATGCTTTGCC 61.830 66.667 7.04 7.04 40.14 4.52
320 321 2.363406 GGCTCCCATGCTTTGCCT 60.363 61.111 9.12 0.00 40.36 4.75
321 322 2.718073 GGCTCCCATGCTTTGCCTG 61.718 63.158 9.12 0.00 40.36 4.85
322 323 2.890371 CTCCCATGCTTTGCCTGC 59.110 61.111 0.00 0.00 0.00 4.85
323 324 3.060020 CTCCCATGCTTTGCCTGCG 62.060 63.158 0.00 0.00 0.00 5.18
324 325 3.063704 CCCATGCTTTGCCTGCGA 61.064 61.111 0.00 0.00 0.00 5.10
325 326 2.180017 CCATGCTTTGCCTGCGAC 59.820 61.111 0.00 0.00 0.00 5.19
326 327 2.202388 CATGCTTTGCCTGCGACG 60.202 61.111 0.00 0.00 0.00 5.12
327 328 4.107051 ATGCTTTGCCTGCGACGC 62.107 61.111 14.19 14.19 0.00 5.19
366 367 3.256960 GGGGTGAGCTGGGGTGAA 61.257 66.667 0.00 0.00 0.00 3.18
367 368 2.034221 GGGTGAGCTGGGGTGAAC 59.966 66.667 0.00 0.00 0.00 3.18
368 369 2.358737 GGTGAGCTGGGGTGAACG 60.359 66.667 0.00 0.00 0.00 3.95
369 370 2.358737 GTGAGCTGGGGTGAACGG 60.359 66.667 0.00 0.00 0.00 4.44
370 371 3.636231 TGAGCTGGGGTGAACGGG 61.636 66.667 0.00 0.00 0.00 5.28
371 372 3.319198 GAGCTGGGGTGAACGGGA 61.319 66.667 0.00 0.00 0.00 5.14
372 373 3.316573 GAGCTGGGGTGAACGGGAG 62.317 68.421 0.00 0.00 0.00 4.30
373 374 3.319198 GCTGGGGTGAACGGGAGA 61.319 66.667 0.00 0.00 0.00 3.71
374 375 2.663196 CTGGGGTGAACGGGAGAC 59.337 66.667 0.00 0.00 0.00 3.36
385 386 4.078516 GGGAGACGACCGTTGGGG 62.079 72.222 0.00 0.00 43.62 4.96
386 387 2.993264 GGAGACGACCGTTGGGGA 60.993 66.667 0.00 0.00 39.97 4.81
387 388 2.260743 GAGACGACCGTTGGGGAC 59.739 66.667 0.00 0.00 39.97 4.46
427 428 4.514577 CCGCACGGGAGCAGGTAG 62.515 72.222 0.00 0.00 38.47 3.18
428 429 3.449227 CGCACGGGAGCAGGTAGA 61.449 66.667 0.00 0.00 0.00 2.59
429 430 2.496817 GCACGGGAGCAGGTAGAG 59.503 66.667 0.00 0.00 0.00 2.43
430 431 2.352032 GCACGGGAGCAGGTAGAGT 61.352 63.158 0.00 0.00 0.00 3.24
431 432 1.889530 GCACGGGAGCAGGTAGAGTT 61.890 60.000 0.00 0.00 0.00 3.01
432 433 1.471119 CACGGGAGCAGGTAGAGTTA 58.529 55.000 0.00 0.00 0.00 2.24
433 434 1.405821 CACGGGAGCAGGTAGAGTTAG 59.594 57.143 0.00 0.00 0.00 2.34
434 435 1.033574 CGGGAGCAGGTAGAGTTAGG 58.966 60.000 0.00 0.00 0.00 2.69
435 436 1.409802 CGGGAGCAGGTAGAGTTAGGA 60.410 57.143 0.00 0.00 0.00 2.94
436 437 2.312390 GGGAGCAGGTAGAGTTAGGAG 58.688 57.143 0.00 0.00 0.00 3.69
437 438 1.684450 GGAGCAGGTAGAGTTAGGAGC 59.316 57.143 0.00 0.00 0.00 4.70
438 439 1.335496 GAGCAGGTAGAGTTAGGAGCG 59.665 57.143 0.00 0.00 0.00 5.03
439 440 0.386113 GCAGGTAGAGTTAGGAGCGG 59.614 60.000 0.00 0.00 0.00 5.52
440 441 2.022754 GCAGGTAGAGTTAGGAGCGGA 61.023 57.143 0.00 0.00 0.00 5.54
441 442 1.950909 CAGGTAGAGTTAGGAGCGGAG 59.049 57.143 0.00 0.00 0.00 4.63
442 443 1.133730 AGGTAGAGTTAGGAGCGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
443 444 1.133853 GGTAGAGTTAGGAGCGGAGGA 60.134 57.143 0.00 0.00 0.00 3.71
444 445 1.948834 GTAGAGTTAGGAGCGGAGGAC 59.051 57.143 0.00 0.00 0.00 3.85
445 446 0.396001 AGAGTTAGGAGCGGAGGACC 60.396 60.000 0.00 0.00 0.00 4.46
479 480 4.551702 AAAATGGGGGCAGTTCAAATAC 57.448 40.909 0.00 0.00 0.00 1.89
480 481 2.917713 ATGGGGGCAGTTCAAATACA 57.082 45.000 0.00 0.00 0.00 2.29
481 482 1.917872 TGGGGGCAGTTCAAATACAC 58.082 50.000 0.00 0.00 0.00 2.90
482 483 1.427368 TGGGGGCAGTTCAAATACACT 59.573 47.619 0.00 0.00 0.00 3.55
483 484 2.645297 TGGGGGCAGTTCAAATACACTA 59.355 45.455 0.00 0.00 0.00 2.74
484 485 3.268334 TGGGGGCAGTTCAAATACACTAT 59.732 43.478 0.00 0.00 0.00 2.12
485 486 3.632145 GGGGGCAGTTCAAATACACTATG 59.368 47.826 0.00 0.00 0.00 2.23
486 487 4.523083 GGGGCAGTTCAAATACACTATGA 58.477 43.478 0.00 0.00 0.00 2.15
487 488 4.335594 GGGGCAGTTCAAATACACTATGAC 59.664 45.833 0.00 0.00 0.00 3.06
488 489 5.186198 GGGCAGTTCAAATACACTATGACT 58.814 41.667 0.00 0.00 0.00 3.41
489 490 5.294552 GGGCAGTTCAAATACACTATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
490 491 6.109359 GGCAGTTCAAATACACTATGACTCT 58.891 40.000 0.00 0.00 0.00 3.24
491 492 7.265673 GGCAGTTCAAATACACTATGACTCTA 58.734 38.462 0.00 0.00 0.00 2.43
492 493 7.928706 GGCAGTTCAAATACACTATGACTCTAT 59.071 37.037 0.00 0.00 0.00 1.98
493 494 8.759641 GCAGTTCAAATACACTATGACTCTATG 58.240 37.037 0.00 0.00 0.00 2.23
510 511 9.774413 TGACTCTATGAGTAATGATTAGTACGA 57.226 33.333 0.00 0.00 43.53 3.43
518 519 9.863845 TGAGTAATGATTAGTACGATTTCAACA 57.136 29.630 0.00 0.00 32.87 3.33
525 526 9.103861 TGATTAGTACGATTTCAACATAATGCA 57.896 29.630 0.00 0.00 0.00 3.96
527 528 9.882996 ATTAGTACGATTTCAACATAATGCATG 57.117 29.630 0.00 0.00 40.78 4.06
528 529 6.728200 AGTACGATTTCAACATAATGCATGG 58.272 36.000 0.00 0.00 39.13 3.66
529 530 4.362279 ACGATTTCAACATAATGCATGGC 58.638 39.130 0.00 0.00 39.13 4.40
530 531 4.142204 ACGATTTCAACATAATGCATGGCA 60.142 37.500 0.00 0.00 44.86 4.92
531 532 4.443063 CGATTTCAACATAATGCATGGCAG 59.557 41.667 0.00 0.00 43.65 4.85
532 533 4.804868 TTTCAACATAATGCATGGCAGT 57.195 36.364 0.00 0.00 43.65 4.40
533 534 3.786516 TCAACATAATGCATGGCAGTG 57.213 42.857 0.00 0.00 43.65 3.66
534 535 2.427812 TCAACATAATGCATGGCAGTGG 59.572 45.455 0.00 0.00 43.65 4.00
535 536 2.148446 ACATAATGCATGGCAGTGGT 57.852 45.000 0.00 0.00 43.65 4.16
536 537 2.026641 ACATAATGCATGGCAGTGGTC 58.973 47.619 0.00 0.00 43.65 4.02
537 538 2.304092 CATAATGCATGGCAGTGGTCT 58.696 47.619 0.00 0.00 43.65 3.85
538 539 3.117926 ACATAATGCATGGCAGTGGTCTA 60.118 43.478 0.00 0.00 43.65 2.59
539 540 2.048444 AATGCATGGCAGTGGTCTAG 57.952 50.000 0.00 0.00 43.65 2.43
540 541 0.914644 ATGCATGGCAGTGGTCTAGT 59.085 50.000 0.00 0.00 43.65 2.57
541 542 0.692476 TGCATGGCAGTGGTCTAGTT 59.308 50.000 0.00 0.00 33.32 2.24
542 543 1.339055 TGCATGGCAGTGGTCTAGTTC 60.339 52.381 0.00 0.00 33.32 3.01
543 544 1.065854 GCATGGCAGTGGTCTAGTTCT 60.066 52.381 0.00 0.00 0.00 3.01
544 545 2.625737 CATGGCAGTGGTCTAGTTCTG 58.374 52.381 0.00 0.00 0.00 3.02
545 546 1.717032 TGGCAGTGGTCTAGTTCTGT 58.283 50.000 0.00 0.00 0.00 3.41
546 547 2.884320 TGGCAGTGGTCTAGTTCTGTA 58.116 47.619 0.00 0.00 0.00 2.74
547 548 2.561419 TGGCAGTGGTCTAGTTCTGTAC 59.439 50.000 0.00 0.00 0.00 2.90
548 549 2.415625 GGCAGTGGTCTAGTTCTGTACG 60.416 54.545 0.00 0.00 0.00 3.67
549 550 2.486982 GCAGTGGTCTAGTTCTGTACGA 59.513 50.000 0.00 0.00 0.00 3.43
550 551 3.128938 GCAGTGGTCTAGTTCTGTACGAT 59.871 47.826 0.00 0.00 0.00 3.73
551 552 4.334759 GCAGTGGTCTAGTTCTGTACGATA 59.665 45.833 0.00 0.00 0.00 2.92
552 553 5.163683 GCAGTGGTCTAGTTCTGTACGATAA 60.164 44.000 0.00 0.00 0.00 1.75
553 554 6.256686 CAGTGGTCTAGTTCTGTACGATAAC 58.743 44.000 0.00 0.00 0.00 1.89
554 555 6.093771 CAGTGGTCTAGTTCTGTACGATAACT 59.906 42.308 10.84 10.84 37.27 2.24
555 556 7.279536 CAGTGGTCTAGTTCTGTACGATAACTA 59.720 40.741 11.67 11.67 35.23 2.24
556 557 7.279758 AGTGGTCTAGTTCTGTACGATAACTAC 59.720 40.741 9.30 5.38 35.23 2.73
557 558 7.279758 GTGGTCTAGTTCTGTACGATAACTACT 59.720 40.741 9.30 3.65 35.23 2.57
558 559 7.493971 TGGTCTAGTTCTGTACGATAACTACTC 59.506 40.741 9.30 6.66 35.23 2.59
559 560 7.710475 GGTCTAGTTCTGTACGATAACTACTCT 59.290 40.741 9.30 0.00 35.23 3.24
560 561 9.097257 GTCTAGTTCTGTACGATAACTACTCTT 57.903 37.037 9.30 0.00 35.23 2.85
561 562 9.311916 TCTAGTTCTGTACGATAACTACTCTTC 57.688 37.037 9.30 0.00 35.23 2.87
562 563 7.002816 AGTTCTGTACGATAACTACTCTTCG 57.997 40.000 5.73 0.00 37.60 3.79
563 564 5.980698 TCTGTACGATAACTACTCTTCGG 57.019 43.478 0.00 0.00 35.98 4.30
564 565 5.423015 TCTGTACGATAACTACTCTTCGGT 58.577 41.667 0.00 0.00 35.98 4.69
565 566 5.877012 TCTGTACGATAACTACTCTTCGGTT 59.123 40.000 0.00 0.00 35.98 4.44
566 567 6.372659 TCTGTACGATAACTACTCTTCGGTTT 59.627 38.462 0.00 0.00 35.98 3.27
567 568 6.913170 TGTACGATAACTACTCTTCGGTTTT 58.087 36.000 0.00 0.00 35.98 2.43
568 569 7.370383 TGTACGATAACTACTCTTCGGTTTTT 58.630 34.615 0.00 0.00 35.98 1.94
587 588 4.868450 TTTTTGAACACCAGTACAGACG 57.132 40.909 0.00 0.00 0.00 4.18
588 589 1.860676 TTGAACACCAGTACAGACGC 58.139 50.000 0.00 0.00 0.00 5.19
589 590 0.747852 TGAACACCAGTACAGACGCA 59.252 50.000 0.00 0.00 0.00 5.24
590 591 1.137282 TGAACACCAGTACAGACGCAA 59.863 47.619 0.00 0.00 0.00 4.85
592 593 0.600255 ACACCAGTACAGACGCAAGC 60.600 55.000 0.00 0.00 45.62 4.01
593 594 1.372997 ACCAGTACAGACGCAAGCG 60.373 57.895 13.50 13.50 46.03 4.68
594 595 2.730672 CCAGTACAGACGCAAGCGC 61.731 63.158 15.09 0.00 44.19 5.92
595 596 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
596 597 1.006102 AGTACAGACGCAAGCGCTT 60.006 52.632 18.98 18.98 44.19 4.68
597 598 0.242825 AGTACAGACGCAAGCGCTTA 59.757 50.000 24.55 0.72 44.19 3.09
598 599 1.135083 AGTACAGACGCAAGCGCTTAT 60.135 47.619 24.55 11.59 44.19 1.73
599 600 2.098607 AGTACAGACGCAAGCGCTTATA 59.901 45.455 24.55 4.12 44.19 0.98
600 601 1.278238 ACAGACGCAAGCGCTTATAC 58.722 50.000 24.55 14.27 44.19 1.47
601 602 1.277326 CAGACGCAAGCGCTTATACA 58.723 50.000 24.55 0.00 44.19 2.29
602 603 1.860950 CAGACGCAAGCGCTTATACAT 59.139 47.619 24.55 3.49 44.19 2.29
603 604 3.049912 CAGACGCAAGCGCTTATACATA 58.950 45.455 24.55 0.00 44.19 2.29
604 605 3.050619 AGACGCAAGCGCTTATACATAC 58.949 45.455 24.55 10.53 44.19 2.39
605 606 1.784856 ACGCAAGCGCTTATACATACG 59.215 47.619 24.55 18.34 44.19 3.06
606 607 1.784856 CGCAAGCGCTTATACATACGT 59.215 47.619 24.55 0.00 35.30 3.57
607 608 2.408487 CGCAAGCGCTTATACATACGTG 60.408 50.000 24.55 10.62 35.30 4.49
608 609 2.659291 GCAAGCGCTTATACATACGTGC 60.659 50.000 24.55 15.05 38.02 5.34
609 610 2.502213 AGCGCTTATACATACGTGCA 57.498 45.000 2.64 0.00 39.56 4.57
610 611 3.026630 AGCGCTTATACATACGTGCAT 57.973 42.857 2.64 0.00 39.56 3.96
611 612 4.168922 AGCGCTTATACATACGTGCATA 57.831 40.909 2.64 0.00 39.56 3.14
612 613 3.918591 AGCGCTTATACATACGTGCATAC 59.081 43.478 2.64 0.00 39.56 2.39
613 614 3.671459 GCGCTTATACATACGTGCATACA 59.329 43.478 0.00 0.00 37.78 2.29
614 615 4.326278 GCGCTTATACATACGTGCATACAT 59.674 41.667 0.00 0.00 37.78 2.29
615 616 5.163992 GCGCTTATACATACGTGCATACATT 60.164 40.000 0.00 0.00 37.78 2.71
616 617 6.458503 CGCTTATACATACGTGCATACATTC 58.541 40.000 0.00 0.00 0.00 2.67
617 618 6.088883 CGCTTATACATACGTGCATACATTCA 59.911 38.462 0.00 0.00 0.00 2.57
618 619 7.227461 GCTTATACATACGTGCATACATTCAC 58.773 38.462 0.00 0.00 0.00 3.18
619 620 7.621426 GCTTATACATACGTGCATACATTCACC 60.621 40.741 0.00 0.00 0.00 4.02
620 621 3.202906 ACATACGTGCATACATTCACCC 58.797 45.455 0.00 0.00 0.00 4.61
621 622 2.319136 TACGTGCATACATTCACCCC 57.681 50.000 0.00 0.00 0.00 4.95
622 623 0.618458 ACGTGCATACATTCACCCCT 59.382 50.000 0.00 0.00 0.00 4.79
623 624 1.834896 ACGTGCATACATTCACCCCTA 59.165 47.619 0.00 0.00 0.00 3.53
624 625 2.438021 ACGTGCATACATTCACCCCTAT 59.562 45.455 0.00 0.00 0.00 2.57
625 626 2.807967 CGTGCATACATTCACCCCTATG 59.192 50.000 0.00 0.00 0.00 2.23
626 627 3.494223 CGTGCATACATTCACCCCTATGA 60.494 47.826 0.00 0.00 0.00 2.15
627 628 4.460263 GTGCATACATTCACCCCTATGAA 58.540 43.478 0.00 0.00 42.62 2.57
628 629 4.275936 GTGCATACATTCACCCCTATGAAC 59.724 45.833 0.00 0.00 41.29 3.18
629 630 3.498397 GCATACATTCACCCCTATGAACG 59.502 47.826 0.00 0.00 41.29 3.95
630 631 2.038387 ACATTCACCCCTATGAACGC 57.962 50.000 0.00 0.00 41.29 4.84
631 632 1.280710 ACATTCACCCCTATGAACGCA 59.719 47.619 0.00 0.00 41.29 5.24
632 633 1.670811 CATTCACCCCTATGAACGCAC 59.329 52.381 0.00 0.00 41.29 5.34
633 634 0.687920 TTCACCCCTATGAACGCACA 59.312 50.000 0.00 0.00 33.62 4.57
634 635 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
635 636 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
636 637 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
637 638 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
638 639 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
639 640 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
640 641 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
641 642 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
642 643 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
643 644 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
647 648 4.562425 CACACACGCACACCCCCT 62.562 66.667 0.00 0.00 0.00 4.79
648 649 4.250305 ACACACGCACACCCCCTC 62.250 66.667 0.00 0.00 0.00 4.30
654 655 3.376078 GCACACCCCCTCGTCGTA 61.376 66.667 0.00 0.00 0.00 3.43
655 656 2.882876 CACACCCCCTCGTCGTAG 59.117 66.667 0.00 0.00 0.00 3.51
656 657 1.676635 CACACCCCCTCGTCGTAGA 60.677 63.158 0.00 0.00 0.00 2.59
669 670 1.386533 TCGTAGACGGGAACATCTCC 58.613 55.000 1.67 0.00 44.54 3.71
670 671 1.064906 TCGTAGACGGGAACATCTCCT 60.065 52.381 1.67 0.00 44.68 3.69
671 672 1.334243 CGTAGACGGGAACATCTCCTC 59.666 57.143 0.00 0.00 44.68 3.71
672 673 1.682323 GTAGACGGGAACATCTCCTCC 59.318 57.143 0.00 0.00 44.68 4.30
673 674 0.688087 AGACGGGAACATCTCCTCCC 60.688 60.000 0.00 0.00 46.97 4.30
678 679 1.573108 GGAACATCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
679 680 1.909302 GGAACATCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
680 681 2.305927 GGAACATCTCCTCCCACTGAAA 59.694 50.000 0.00 0.00 41.61 2.69
681 682 3.604582 GAACATCTCCTCCCACTGAAAG 58.395 50.000 0.00 0.00 42.29 2.62
682 683 1.280421 ACATCTCCTCCCACTGAAAGC 59.720 52.381 0.00 0.00 37.60 3.51
683 684 0.539051 ATCTCCTCCCACTGAAAGCG 59.461 55.000 0.00 0.00 37.60 4.68
684 685 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
685 686 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
686 687 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
687 688 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
688 689 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
699 700 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
700 701 1.300620 CGCATCGCCGGAAATCCTA 60.301 57.895 5.05 0.00 0.00 2.94
701 702 0.878523 CGCATCGCCGGAAATCCTAA 60.879 55.000 5.05 0.00 0.00 2.69
702 703 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
703 704 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
704 705 2.098443 GCATCGCCGGAAATCCTAAAAA 59.902 45.455 5.05 0.00 0.00 1.94
725 726 4.574599 AAAATCCAGGAATAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
726 727 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
727 728 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
728 729 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
729 730 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
730 731 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
731 732 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
732 733 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
733 734 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
734 735 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
735 736 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
736 737 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
737 738 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
738 739 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
739 740 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
740 741 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
741 742 1.611673 CGAGCACCAGGATTTGAACCT 60.612 52.381 0.00 0.00 38.40 3.50
742 743 2.519013 GAGCACCAGGATTTGAACCTT 58.481 47.619 0.00 0.00 35.35 3.50
743 744 2.229784 GAGCACCAGGATTTGAACCTTG 59.770 50.000 0.00 0.00 35.35 3.61
744 745 1.273327 GCACCAGGATTTGAACCTTGG 59.727 52.381 0.00 0.00 35.35 3.61
745 746 2.597455 CACCAGGATTTGAACCTTGGT 58.403 47.619 0.00 0.00 38.47 3.67
746 747 2.297033 CACCAGGATTTGAACCTTGGTG 59.703 50.000 5.13 5.13 43.12 4.17
747 748 1.895131 CCAGGATTTGAACCTTGGTGG 59.105 52.381 0.00 0.00 42.93 4.61
748 749 1.895131 CAGGATTTGAACCTTGGTGGG 59.105 52.381 0.00 0.00 41.11 4.61
749 750 0.608130 GGATTTGAACCTTGGTGGGC 59.392 55.000 0.00 0.00 41.11 5.36
750 751 1.632589 GATTTGAACCTTGGTGGGCT 58.367 50.000 0.00 0.00 41.11 5.19
751 752 1.273327 GATTTGAACCTTGGTGGGCTG 59.727 52.381 0.00 0.00 41.11 4.85
752 753 0.260230 TTTGAACCTTGGTGGGCTGA 59.740 50.000 0.00 0.00 41.11 4.26
753 754 0.178992 TTGAACCTTGGTGGGCTGAG 60.179 55.000 0.00 0.00 41.11 3.35
754 755 1.303643 GAACCTTGGTGGGCTGAGG 60.304 63.158 0.00 0.00 41.11 3.86
755 756 1.774217 AACCTTGGTGGGCTGAGGA 60.774 57.895 0.00 0.00 41.11 3.71
756 757 1.142688 AACCTTGGTGGGCTGAGGAT 61.143 55.000 0.00 0.00 41.11 3.24
757 758 0.253160 ACCTTGGTGGGCTGAGGATA 60.253 55.000 0.00 0.00 41.11 2.59
758 759 0.181350 CCTTGGTGGGCTGAGGATAC 59.819 60.000 0.00 0.00 0.00 2.24
759 760 0.181350 CTTGGTGGGCTGAGGATACC 59.819 60.000 0.00 0.00 37.17 2.73
760 761 0.548926 TTGGTGGGCTGAGGATACCA 60.549 55.000 0.00 0.00 39.49 3.25
763 764 2.607811 TGGGCTGAGGATACCACTG 58.392 57.895 0.00 0.00 37.17 3.66
764 765 0.252696 TGGGCTGAGGATACCACTGT 60.253 55.000 0.00 0.00 37.17 3.55
765 766 0.466124 GGGCTGAGGATACCACTGTC 59.534 60.000 0.00 0.00 37.17 3.51
766 767 0.466124 GGCTGAGGATACCACTGTCC 59.534 60.000 0.00 0.00 34.64 4.02
767 768 0.466124 GCTGAGGATACCACTGTCCC 59.534 60.000 0.00 0.00 35.00 4.46
768 769 1.967274 GCTGAGGATACCACTGTCCCT 60.967 57.143 0.00 0.00 35.00 4.20
769 770 2.035632 CTGAGGATACCACTGTCCCTC 58.964 57.143 0.00 0.00 41.36 4.30
770 771 1.646447 TGAGGATACCACTGTCCCTCT 59.354 52.381 0.00 0.00 41.46 3.69
771 772 2.856864 TGAGGATACCACTGTCCCTCTA 59.143 50.000 0.00 0.00 41.46 2.43
772 773 3.271225 TGAGGATACCACTGTCCCTCTAA 59.729 47.826 0.00 0.00 41.46 2.10
773 774 3.637694 GAGGATACCACTGTCCCTCTAAC 59.362 52.174 0.00 0.00 39.50 2.34
774 775 2.699321 GGATACCACTGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
775 776 3.371965 GATACCACTGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
776 777 2.344093 ACCACTGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
777 778 2.188817 ACCACTGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
778 779 1.486726 CCACTGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
779 780 2.187958 CACTGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
780 781 2.571653 CACTGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
781 782 2.572104 ACTGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
782 783 1.913419 TGTCCCTCTAACCATCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
783 784 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
784 785 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
785 786 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
786 787 2.041081 CCCTCTAACCATCCAACCACAA 59.959 50.000 0.00 0.00 0.00 3.33
787 788 3.347216 CCTCTAACCATCCAACCACAAG 58.653 50.000 0.00 0.00 0.00 3.16
788 789 3.244911 CCTCTAACCATCCAACCACAAGT 60.245 47.826 0.00 0.00 0.00 3.16
789 790 4.003648 CTCTAACCATCCAACCACAAGTC 58.996 47.826 0.00 0.00 0.00 3.01
790 791 2.746279 AACCATCCAACCACAAGTCA 57.254 45.000 0.00 0.00 0.00 3.41
791 792 2.276732 ACCATCCAACCACAAGTCAG 57.723 50.000 0.00 0.00 0.00 3.51
792 793 1.494721 ACCATCCAACCACAAGTCAGT 59.505 47.619 0.00 0.00 0.00 3.41
793 794 2.091885 ACCATCCAACCACAAGTCAGTT 60.092 45.455 0.00 0.00 0.00 3.16
794 795 2.554032 CCATCCAACCACAAGTCAGTTC 59.446 50.000 0.00 0.00 0.00 3.01
795 796 3.213506 CATCCAACCACAAGTCAGTTCA 58.786 45.455 0.00 0.00 0.00 3.18
796 797 2.639065 TCCAACCACAAGTCAGTTCAC 58.361 47.619 0.00 0.00 0.00 3.18
799 800 3.427503 CCAACCACAAGTCAGTTCACAAC 60.428 47.826 0.00 0.00 0.00 3.32
818 819 3.832615 ACTACTCTTCGGTTTTGGTGT 57.167 42.857 0.00 0.00 0.00 4.16
841 842 3.548745 TGAGGATCATGGTGCTACAAG 57.451 47.619 0.00 0.00 42.56 3.16
844 845 1.490490 GGATCATGGTGCTACAAGGGA 59.510 52.381 0.00 0.00 0.00 4.20
890 892 1.217882 CACACACACGTTCCTCCTTC 58.782 55.000 0.00 0.00 0.00 3.46
1178 1235 8.697507 ATCAAAATCTGAAACAGGTAGTTCTT 57.302 30.769 0.00 0.00 40.26 2.52
1204 1261 5.276584 GCTTGTGCATAATAACGAGACTGAG 60.277 44.000 0.00 0.00 39.41 3.35
1245 1302 3.146066 TCTTGCTACTTTCGCCACAATT 58.854 40.909 0.00 0.00 0.00 2.32
1291 1349 2.173569 ACTACTGATGGCCTGGAAATCC 59.826 50.000 3.32 0.00 0.00 3.01
1367 1449 5.098211 GCAACCTTTCTCTTTGCATGTATC 58.902 41.667 0.00 0.00 44.17 2.24
1376 1458 7.776933 TCTCTTTGCATGTATCTATGTGTTC 57.223 36.000 0.00 0.00 0.00 3.18
1597 1679 4.456222 AGGAAGACTATATGATGGTCGTCG 59.544 45.833 10.89 0.00 45.29 5.12
1610 1692 1.300620 TCGTCGGGTTGCTGTGAAG 60.301 57.895 0.00 0.00 0.00 3.02
1664 1746 8.853077 ATGAGTTTGTGAATGAAGTTATGAGA 57.147 30.769 0.00 0.00 0.00 3.27
1805 1888 7.267857 ACTCAGAGAAACCCAAAGAAATTTTG 58.732 34.615 3.79 0.00 0.00 2.44
1892 1975 3.727723 GCTGTAATACACGTATCGTCCAC 59.272 47.826 0.00 0.00 38.32 4.02
2234 2317 6.469139 TTGCAAGCATGTGAAATTACAATG 57.531 33.333 0.00 0.00 33.69 2.82
2273 2356 6.071896 TCGCGAGAAAGATGATCATAATAGGT 60.072 38.462 8.54 0.00 37.03 3.08
2318 2401 5.587844 ACCTATGTATCGCCCTACTATAACG 59.412 44.000 0.00 0.00 0.00 3.18
2530 2614 6.618287 TGGATGTACAAAGTTCAAGTTCTG 57.382 37.500 0.00 0.00 0.00 3.02
2589 2673 2.811431 CCTACAACAATCGCCAACTCAA 59.189 45.455 0.00 0.00 0.00 3.02
2626 2710 6.623767 GCCTTGTGAATCAAAGAACCTACATC 60.624 42.308 6.71 0.00 35.48 3.06
2641 2725 4.042809 ACCTACATCCATTTCCAACACTGA 59.957 41.667 0.00 0.00 0.00 3.41
2696 2783 9.086336 GAAATTGAATAATTCCAGCGAAATTCA 57.914 29.630 0.00 0.00 35.14 2.57
2757 2848 0.814457 CTAGAGTCAAGAGCAGCCGT 59.186 55.000 0.00 0.00 0.00 5.68
2786 2877 3.518590 CATCCTAAGTTACCGACCACAC 58.481 50.000 0.00 0.00 0.00 3.82
2790 2881 3.006110 CCTAAGTTACCGACCACACAAGA 59.994 47.826 0.00 0.00 0.00 3.02
2842 2933 2.819608 TCAACTGCTAAAAGGCATCACC 59.180 45.455 0.00 0.00 41.63 4.02
2932 3027 4.089361 AGGAATTTGTGGGTGAGGAAATC 58.911 43.478 0.00 0.00 0.00 2.17
2969 3064 3.262420 ACTTGCAGCGGAATAAGTACTG 58.738 45.455 0.00 0.00 32.05 2.74
3144 3239 8.627208 AAGTCTTCAAACACAGATATGAACAT 57.373 30.769 0.00 0.00 0.00 2.71
3368 3464 2.673833 GTGGTAAGTCTTCAGGTGACG 58.326 52.381 0.00 0.00 39.24 4.35
3395 3491 2.093128 ACCTTCACAAACTCGGTCACTT 60.093 45.455 0.00 0.00 0.00 3.16
3412 3508 1.468520 ACTTGGCGATCCACAATTTCG 59.531 47.619 0.00 0.00 43.33 3.46
3588 3684 2.519377 TTTTCGCTCAAAGTCCTCGA 57.481 45.000 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.269517 CGGAGATAGTCAGCCTGAAGC 60.270 57.143 0.00 0.00 44.25 3.86
5 6 0.387202 CACCGGAGATAGTCAGCCTG 59.613 60.000 9.46 0.00 0.00 4.85
6 7 0.259065 TCACCGGAGATAGTCAGCCT 59.741 55.000 9.46 0.00 0.00 4.58
7 8 1.067821 CTTCACCGGAGATAGTCAGCC 59.932 57.143 9.46 0.00 0.00 4.85
8 9 1.067821 CCTTCACCGGAGATAGTCAGC 59.932 57.143 9.46 0.00 0.00 4.26
9 10 2.656002 TCCTTCACCGGAGATAGTCAG 58.344 52.381 9.46 0.00 0.00 3.51
10 11 2.820728 TCCTTCACCGGAGATAGTCA 57.179 50.000 9.46 0.00 0.00 3.41
58 59 4.144703 GAGAACGTCGGGGGCTCC 62.145 72.222 0.00 0.00 0.00 4.70
59 60 2.722201 ATGAGAACGTCGGGGGCTC 61.722 63.158 0.00 0.00 0.00 4.70
60 61 2.683933 ATGAGAACGTCGGGGGCT 60.684 61.111 0.00 0.00 0.00 5.19
61 62 2.311688 ATCATGAGAACGTCGGGGGC 62.312 60.000 0.09 0.00 0.00 5.80
62 63 0.530650 CATCATGAGAACGTCGGGGG 60.531 60.000 0.09 0.00 0.00 5.40
63 64 1.154205 GCATCATGAGAACGTCGGGG 61.154 60.000 0.09 0.00 0.00 5.73
64 65 1.482621 CGCATCATGAGAACGTCGGG 61.483 60.000 0.09 0.00 0.00 5.14
65 66 1.482621 CCGCATCATGAGAACGTCGG 61.483 60.000 0.09 3.86 0.00 4.79
66 67 1.482621 CCCGCATCATGAGAACGTCG 61.483 60.000 0.09 0.00 0.00 5.12
67 68 0.460284 ACCCGCATCATGAGAACGTC 60.460 55.000 0.09 0.00 0.00 4.34
68 69 0.460284 GACCCGCATCATGAGAACGT 60.460 55.000 0.09 0.00 0.00 3.99
69 70 1.482621 CGACCCGCATCATGAGAACG 61.483 60.000 0.09 4.70 0.00 3.95
70 71 0.179111 TCGACCCGCATCATGAGAAC 60.179 55.000 0.09 0.00 0.00 3.01
71 72 0.752658 ATCGACCCGCATCATGAGAA 59.247 50.000 0.09 0.00 0.00 2.87
72 73 0.315251 GATCGACCCGCATCATGAGA 59.685 55.000 0.09 0.00 0.00 3.27
73 74 0.668706 GGATCGACCCGCATCATGAG 60.669 60.000 0.09 0.00 0.00 2.90
74 75 1.367471 GGATCGACCCGCATCATGA 59.633 57.895 0.00 0.00 0.00 3.07
75 76 3.957260 GGATCGACCCGCATCATG 58.043 61.111 0.00 0.00 0.00 3.07
84 85 3.866582 CTGCCCCTGGGATCGACC 61.867 72.222 16.20 0.00 37.50 4.79
85 86 4.554036 GCTGCCCCTGGGATCGAC 62.554 72.222 16.20 0.00 37.50 4.20
98 99 2.707849 CCTGTCAATGGCAGGCTGC 61.708 63.158 30.93 30.93 45.72 5.25
99 100 3.599584 CCTGTCAATGGCAGGCTG 58.400 61.111 21.83 10.94 45.72 4.85
103 104 0.249120 TACCGTCCTGTCAATGGCAG 59.751 55.000 8.06 8.06 0.00 4.85
104 105 0.036765 GTACCGTCCTGTCAATGGCA 60.037 55.000 0.00 0.00 0.00 4.92
105 106 0.036765 TGTACCGTCCTGTCAATGGC 60.037 55.000 0.00 0.00 0.00 4.40
106 107 2.093711 TCATGTACCGTCCTGTCAATGG 60.094 50.000 0.00 0.00 0.00 3.16
107 108 3.245518 TCATGTACCGTCCTGTCAATG 57.754 47.619 0.00 0.00 0.00 2.82
108 109 5.304357 TGATATCATGTACCGTCCTGTCAAT 59.696 40.000 0.00 0.00 0.00 2.57
109 110 4.647399 TGATATCATGTACCGTCCTGTCAA 59.353 41.667 0.00 0.00 0.00 3.18
110 111 4.211920 TGATATCATGTACCGTCCTGTCA 58.788 43.478 0.00 0.00 0.00 3.58
111 112 4.799678 CTGATATCATGTACCGTCCTGTC 58.200 47.826 5.72 0.00 0.00 3.51
112 113 3.005897 GCTGATATCATGTACCGTCCTGT 59.994 47.826 5.72 0.00 0.00 4.00
113 114 3.256879 AGCTGATATCATGTACCGTCCTG 59.743 47.826 5.72 0.00 0.00 3.86
114 115 3.501349 AGCTGATATCATGTACCGTCCT 58.499 45.455 5.72 0.00 0.00 3.85
115 116 3.944055 AGCTGATATCATGTACCGTCC 57.056 47.619 5.72 0.00 0.00 4.79
116 117 5.394802 CACTAGCTGATATCATGTACCGTC 58.605 45.833 5.72 0.00 0.00 4.79
117 118 4.321304 GCACTAGCTGATATCATGTACCGT 60.321 45.833 5.72 0.00 37.91 4.83
118 119 4.169508 GCACTAGCTGATATCATGTACCG 58.830 47.826 5.72 0.00 37.91 4.02
119 120 4.169508 CGCACTAGCTGATATCATGTACC 58.830 47.826 5.72 0.00 39.10 3.34
120 121 4.169508 CCGCACTAGCTGATATCATGTAC 58.830 47.826 5.72 0.00 39.10 2.90
121 122 3.367395 GCCGCACTAGCTGATATCATGTA 60.367 47.826 5.72 0.22 39.10 2.29
122 123 2.611473 GCCGCACTAGCTGATATCATGT 60.611 50.000 5.72 0.00 39.10 3.21
123 124 1.998315 GCCGCACTAGCTGATATCATG 59.002 52.381 5.72 2.32 39.10 3.07
124 125 1.066573 GGCCGCACTAGCTGATATCAT 60.067 52.381 5.72 0.00 39.10 2.45
125 126 0.318441 GGCCGCACTAGCTGATATCA 59.682 55.000 5.07 5.07 39.10 2.15
126 127 0.390472 GGGCCGCACTAGCTGATATC 60.390 60.000 0.00 0.00 39.10 1.63
127 128 1.674057 GGGCCGCACTAGCTGATAT 59.326 57.895 0.00 0.00 39.10 1.63
128 129 2.856628 CGGGCCGCACTAGCTGATA 61.857 63.158 15.42 0.00 39.10 2.15
129 130 4.227134 CGGGCCGCACTAGCTGAT 62.227 66.667 15.42 0.00 39.10 2.90
147 148 2.838225 ATCCAGTCGGGCTACGGG 60.838 66.667 3.97 3.97 44.45 5.28
148 149 2.728817 GATCCAGTCGGGCTACGG 59.271 66.667 1.81 0.00 44.45 4.02
149 150 2.076622 CTGGATCCAGTCGGGCTACG 62.077 65.000 30.55 4.78 39.10 3.51
150 151 0.755698 TCTGGATCCAGTCGGGCTAC 60.756 60.000 35.34 0.00 43.96 3.58
151 152 0.188587 ATCTGGATCCAGTCGGGCTA 59.811 55.000 35.34 18.81 43.96 3.93
152 153 1.074926 ATCTGGATCCAGTCGGGCT 60.075 57.895 35.34 15.25 43.96 5.19
153 154 1.369321 GATCTGGATCCAGTCGGGC 59.631 63.158 35.34 19.65 43.96 6.13
154 155 1.662608 CGATCTGGATCCAGTCGGG 59.337 63.158 34.91 23.81 43.96 5.14
156 157 1.109920 ACCCGATCTGGATCCAGTCG 61.110 60.000 35.23 35.23 43.96 4.18
157 158 0.390860 CACCCGATCTGGATCCAGTC 59.609 60.000 35.34 28.73 43.96 3.51
158 159 1.690219 GCACCCGATCTGGATCCAGT 61.690 60.000 35.34 24.63 43.96 4.00
159 160 1.070445 GCACCCGATCTGGATCCAG 59.930 63.158 32.60 32.60 44.86 3.86
160 161 2.443394 GGCACCCGATCTGGATCCA 61.443 63.158 15.27 15.27 42.00 3.41
161 162 2.427753 GGCACCCGATCTGGATCC 59.572 66.667 10.54 4.20 42.00 3.36
191 192 4.373116 TTCGGCGACAGGTCCAGC 62.373 66.667 10.16 0.00 0.00 4.85
192 193 2.432628 GTTCGGCGACAGGTCCAG 60.433 66.667 10.16 0.00 0.00 3.86
193 194 3.228017 TGTTCGGCGACAGGTCCA 61.228 61.111 10.16 0.00 0.00 4.02
194 195 2.737376 GTGTTCGGCGACAGGTCC 60.737 66.667 10.16 0.00 0.00 4.46
195 196 2.737376 GGTGTTCGGCGACAGGTC 60.737 66.667 10.16 0.00 0.00 3.85
196 197 4.657824 CGGTGTTCGGCGACAGGT 62.658 66.667 10.16 0.00 34.75 4.00
215 216 4.954970 AACAGTGGTGCGGGGCAG 62.955 66.667 0.00 0.00 40.08 4.85
216 217 4.947147 GAACAGTGGTGCGGGGCA 62.947 66.667 0.00 0.00 35.60 5.36
217 218 3.248446 TAGAACAGTGGTGCGGGGC 62.248 63.158 0.00 0.00 0.00 5.80
218 219 1.079127 CTAGAACAGTGGTGCGGGG 60.079 63.158 0.00 0.00 0.00 5.73
219 220 0.537188 ATCTAGAACAGTGGTGCGGG 59.463 55.000 0.00 0.00 0.00 6.13
220 221 1.478510 AGATCTAGAACAGTGGTGCGG 59.521 52.381 0.00 0.00 0.00 5.69
221 222 2.949451 AGATCTAGAACAGTGGTGCG 57.051 50.000 0.00 0.00 0.00 5.34
222 223 3.491792 GGCTAGATCTAGAACAGTGGTGC 60.492 52.174 30.06 13.15 35.21 5.01
223 224 3.701542 TGGCTAGATCTAGAACAGTGGTG 59.298 47.826 30.06 4.16 35.21 4.17
224 225 3.982516 TGGCTAGATCTAGAACAGTGGT 58.017 45.455 30.06 0.00 35.21 4.16
225 226 4.320861 CGATGGCTAGATCTAGAACAGTGG 60.321 50.000 30.06 16.51 35.21 4.00
226 227 4.793071 CGATGGCTAGATCTAGAACAGTG 58.207 47.826 30.06 18.85 35.21 3.66
227 228 3.254657 GCGATGGCTAGATCTAGAACAGT 59.745 47.826 30.06 17.00 35.21 3.55
228 229 3.669290 CGCGATGGCTAGATCTAGAACAG 60.669 52.174 30.06 17.44 35.21 3.16
229 230 2.226674 CGCGATGGCTAGATCTAGAACA 59.773 50.000 30.06 25.59 35.21 3.18
230 231 2.414824 CCGCGATGGCTAGATCTAGAAC 60.415 54.545 30.06 21.55 35.21 3.01
231 232 1.813178 CCGCGATGGCTAGATCTAGAA 59.187 52.381 30.06 18.45 35.21 2.10
232 233 1.003233 TCCGCGATGGCTAGATCTAGA 59.997 52.381 30.06 13.09 37.80 2.43
233 234 1.131504 GTCCGCGATGGCTAGATCTAG 59.868 57.143 23.20 23.20 37.80 2.43
234 235 1.166129 GTCCGCGATGGCTAGATCTA 58.834 55.000 8.23 1.69 37.80 1.98
235 236 1.528292 GGTCCGCGATGGCTAGATCT 61.528 60.000 8.23 0.00 37.80 2.75
236 237 1.080434 GGTCCGCGATGGCTAGATC 60.080 63.158 8.23 0.00 37.80 2.75
237 238 2.920645 CGGTCCGCGATGGCTAGAT 61.921 63.158 8.23 0.00 37.80 1.98
238 239 3.592814 CGGTCCGCGATGGCTAGA 61.593 66.667 8.23 0.00 37.80 2.43
251 252 4.736896 GTCAGGACGGTGGCGGTC 62.737 72.222 0.00 0.00 33.81 4.79
255 256 3.310860 ATTCGGTCAGGACGGTGGC 62.311 63.158 6.84 0.00 33.91 5.01
256 257 1.153628 GATTCGGTCAGGACGGTGG 60.154 63.158 6.84 0.00 33.91 4.61
257 258 1.516386 CGATTCGGTCAGGACGGTG 60.516 63.158 0.00 0.00 33.91 4.94
258 259 1.530013 AACGATTCGGTCAGGACGGT 61.530 55.000 11.29 0.00 33.91 4.83
259 260 1.076533 CAACGATTCGGTCAGGACGG 61.077 60.000 11.29 0.97 0.00 4.79
260 261 1.076533 CCAACGATTCGGTCAGGACG 61.077 60.000 11.29 0.00 0.00 4.79
261 262 1.359459 GCCAACGATTCGGTCAGGAC 61.359 60.000 11.29 0.00 0.00 3.85
262 263 1.079405 GCCAACGATTCGGTCAGGA 60.079 57.895 11.29 0.00 0.00 3.86
263 264 2.106683 GGCCAACGATTCGGTCAGG 61.107 63.158 11.29 3.50 0.00 3.86
264 265 3.486263 GGCCAACGATTCGGTCAG 58.514 61.111 11.29 0.00 0.00 3.51
274 275 2.380410 CGTTTCTCCTCGGCCAACG 61.380 63.158 2.24 5.63 46.11 4.10
275 276 2.677979 GCGTTTCTCCTCGGCCAAC 61.678 63.158 2.24 0.00 0.00 3.77
276 277 2.358247 GCGTTTCTCCTCGGCCAA 60.358 61.111 2.24 0.00 0.00 4.52
277 278 4.388499 GGCGTTTCTCCTCGGCCA 62.388 66.667 2.24 0.00 44.62 5.36
280 281 2.434359 GGTGGCGTTTCTCCTCGG 60.434 66.667 0.00 0.00 0.00 4.63
281 282 2.027625 GTGGTGGCGTTTCTCCTCG 61.028 63.158 0.00 0.00 0.00 4.63
282 283 0.951040 CAGTGGTGGCGTTTCTCCTC 60.951 60.000 0.00 0.00 0.00 3.71
283 284 1.071471 CAGTGGTGGCGTTTCTCCT 59.929 57.895 0.00 0.00 0.00 3.69
284 285 2.617274 GCAGTGGTGGCGTTTCTCC 61.617 63.158 0.00 0.00 0.00 3.71
285 286 2.946762 GCAGTGGTGGCGTTTCTC 59.053 61.111 0.00 0.00 0.00 2.87
294 295 4.415150 ATGGGAGCCGCAGTGGTG 62.415 66.667 0.89 0.00 41.21 4.17
295 296 4.415150 CATGGGAGCCGCAGTGGT 62.415 66.667 0.89 0.00 41.21 4.16
297 298 4.790962 AGCATGGGAGCCGCAGTG 62.791 66.667 0.00 0.00 34.23 3.66
298 299 3.574074 AAAGCATGGGAGCCGCAGT 62.574 57.895 0.00 0.00 34.23 4.40
299 300 2.753043 AAAGCATGGGAGCCGCAG 60.753 61.111 0.00 0.00 34.23 5.18
300 301 3.063704 CAAAGCATGGGAGCCGCA 61.064 61.111 0.00 0.00 34.23 5.69
301 302 4.503314 GCAAAGCATGGGAGCCGC 62.503 66.667 0.00 0.00 34.23 6.53
302 303 3.830192 GGCAAAGCATGGGAGCCG 61.830 66.667 0.00 0.00 35.42 5.52
303 304 2.363406 AGGCAAAGCATGGGAGCC 60.363 61.111 0.00 0.00 45.54 4.70
304 305 2.890371 CAGGCAAAGCATGGGAGC 59.110 61.111 0.00 0.00 36.65 4.70
305 306 2.890371 GCAGGCAAAGCATGGGAG 59.110 61.111 5.78 0.00 40.87 4.30
308 309 2.180017 GTCGCAGGCAAAGCATGG 59.820 61.111 5.78 0.00 40.87 3.66
309 310 2.202388 CGTCGCAGGCAAAGCATG 60.202 61.111 0.00 0.00 43.53 4.06
310 311 4.107051 GCGTCGCAGGCAAAGCAT 62.107 61.111 13.44 0.00 0.00 3.79
349 350 3.256960 TTCACCCCAGCTCACCCC 61.257 66.667 0.00 0.00 0.00 4.95
350 351 2.034221 GTTCACCCCAGCTCACCC 59.966 66.667 0.00 0.00 0.00 4.61
351 352 2.358737 CGTTCACCCCAGCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
352 353 2.358737 CCGTTCACCCCAGCTCAC 60.359 66.667 0.00 0.00 0.00 3.51
353 354 3.636231 CCCGTTCACCCCAGCTCA 61.636 66.667 0.00 0.00 0.00 4.26
354 355 3.316573 CTCCCGTTCACCCCAGCTC 62.317 68.421 0.00 0.00 0.00 4.09
355 356 3.322466 CTCCCGTTCACCCCAGCT 61.322 66.667 0.00 0.00 0.00 4.24
356 357 3.319198 TCTCCCGTTCACCCCAGC 61.319 66.667 0.00 0.00 0.00 4.85
357 358 2.663196 GTCTCCCGTTCACCCCAG 59.337 66.667 0.00 0.00 0.00 4.45
358 359 3.307906 CGTCTCCCGTTCACCCCA 61.308 66.667 0.00 0.00 0.00 4.96
359 360 2.993264 TCGTCTCCCGTTCACCCC 60.993 66.667 0.00 0.00 37.94 4.95
360 361 2.260743 GTCGTCTCCCGTTCACCC 59.739 66.667 0.00 0.00 37.94 4.61
361 362 2.260743 GGTCGTCTCCCGTTCACC 59.739 66.667 0.00 0.00 37.94 4.02
362 363 2.126580 CGGTCGTCTCCCGTTCAC 60.127 66.667 0.00 0.00 40.59 3.18
368 369 4.078516 CCCCAACGGTCGTCTCCC 62.079 72.222 0.00 0.00 0.00 4.30
369 370 2.993264 TCCCCAACGGTCGTCTCC 60.993 66.667 0.00 0.00 0.00 3.71
370 371 2.260743 GTCCCCAACGGTCGTCTC 59.739 66.667 0.00 0.00 0.00 3.36
410 411 4.514577 CTACCTGCTCCCGTGCGG 62.515 72.222 3.25 3.25 38.94 5.69
411 412 3.417275 CTCTACCTGCTCCCGTGCG 62.417 68.421 0.00 0.00 35.36 5.34
412 413 1.889530 AACTCTACCTGCTCCCGTGC 61.890 60.000 0.00 0.00 0.00 5.34
413 414 1.405821 CTAACTCTACCTGCTCCCGTG 59.594 57.143 0.00 0.00 0.00 4.94
414 415 1.685491 CCTAACTCTACCTGCTCCCGT 60.685 57.143 0.00 0.00 0.00 5.28
415 416 1.033574 CCTAACTCTACCTGCTCCCG 58.966 60.000 0.00 0.00 0.00 5.14
416 417 2.312390 CTCCTAACTCTACCTGCTCCC 58.688 57.143 0.00 0.00 0.00 4.30
417 418 1.684450 GCTCCTAACTCTACCTGCTCC 59.316 57.143 0.00 0.00 0.00 4.70
418 419 1.335496 CGCTCCTAACTCTACCTGCTC 59.665 57.143 0.00 0.00 0.00 4.26
419 420 1.394618 CGCTCCTAACTCTACCTGCT 58.605 55.000 0.00 0.00 0.00 4.24
420 421 0.386113 CCGCTCCTAACTCTACCTGC 59.614 60.000 0.00 0.00 0.00 4.85
421 422 1.950909 CTCCGCTCCTAACTCTACCTG 59.049 57.143 0.00 0.00 0.00 4.00
422 423 1.133730 CCTCCGCTCCTAACTCTACCT 60.134 57.143 0.00 0.00 0.00 3.08
423 424 1.133853 TCCTCCGCTCCTAACTCTACC 60.134 57.143 0.00 0.00 0.00 3.18
424 425 1.948834 GTCCTCCGCTCCTAACTCTAC 59.051 57.143 0.00 0.00 0.00 2.59
425 426 1.133853 GGTCCTCCGCTCCTAACTCTA 60.134 57.143 0.00 0.00 0.00 2.43
426 427 0.396001 GGTCCTCCGCTCCTAACTCT 60.396 60.000 0.00 0.00 0.00 3.24
427 428 2.117257 GGTCCTCCGCTCCTAACTC 58.883 63.158 0.00 0.00 0.00 3.01
428 429 4.358810 GGTCCTCCGCTCCTAACT 57.641 61.111 0.00 0.00 0.00 2.24
438 439 2.443577 GACCCTACCCGGTCCTCC 60.444 72.222 0.00 0.00 45.72 4.30
457 458 4.349342 TGTATTTGAACTGCCCCCATTTTT 59.651 37.500 0.00 0.00 0.00 1.94
458 459 3.906846 TGTATTTGAACTGCCCCCATTTT 59.093 39.130 0.00 0.00 0.00 1.82
459 460 3.260632 GTGTATTTGAACTGCCCCCATTT 59.739 43.478 0.00 0.00 0.00 2.32
460 461 2.831526 GTGTATTTGAACTGCCCCCATT 59.168 45.455 0.00 0.00 0.00 3.16
461 462 2.042979 AGTGTATTTGAACTGCCCCCAT 59.957 45.455 0.00 0.00 0.00 4.00
462 463 1.427368 AGTGTATTTGAACTGCCCCCA 59.573 47.619 0.00 0.00 0.00 4.96
463 464 2.215942 AGTGTATTTGAACTGCCCCC 57.784 50.000 0.00 0.00 0.00 5.40
464 465 4.335594 GTCATAGTGTATTTGAACTGCCCC 59.664 45.833 0.00 0.00 0.00 5.80
465 466 5.186198 AGTCATAGTGTATTTGAACTGCCC 58.814 41.667 0.00 0.00 0.00 5.36
466 467 6.109359 AGAGTCATAGTGTATTTGAACTGCC 58.891 40.000 0.00 0.00 0.00 4.85
467 468 8.759641 CATAGAGTCATAGTGTATTTGAACTGC 58.240 37.037 0.00 0.00 0.00 4.40
484 485 9.774413 TCGTACTAATCATTACTCATAGAGTCA 57.226 33.333 2.48 0.00 42.40 3.41
492 493 9.863845 TGTTGAAATCGTACTAATCATTACTCA 57.136 29.630 0.00 0.00 0.00 3.41
499 500 9.103861 TGCATTATGTTGAAATCGTACTAATCA 57.896 29.630 0.00 0.00 0.00 2.57
501 502 9.882996 CATGCATTATGTTGAAATCGTACTAAT 57.117 29.630 0.00 0.00 31.92 1.73
502 503 8.341903 CCATGCATTATGTTGAAATCGTACTAA 58.658 33.333 0.00 0.00 34.87 2.24
503 504 7.519809 GCCATGCATTATGTTGAAATCGTACTA 60.520 37.037 0.00 0.00 34.87 1.82
504 505 6.728200 CCATGCATTATGTTGAAATCGTACT 58.272 36.000 0.00 0.00 34.87 2.73
505 506 5.399301 GCCATGCATTATGTTGAAATCGTAC 59.601 40.000 0.00 0.00 34.87 3.67
506 507 5.067023 TGCCATGCATTATGTTGAAATCGTA 59.933 36.000 0.00 0.00 34.87 3.43
507 508 4.142204 TGCCATGCATTATGTTGAAATCGT 60.142 37.500 0.00 0.00 34.87 3.73
508 509 4.361420 TGCCATGCATTATGTTGAAATCG 58.639 39.130 0.00 0.00 34.87 3.34
509 510 5.233476 CACTGCCATGCATTATGTTGAAATC 59.767 40.000 0.00 0.00 38.13 2.17
510 511 5.113383 CACTGCCATGCATTATGTTGAAAT 58.887 37.500 0.00 0.00 38.13 2.17
511 512 4.496360 CACTGCCATGCATTATGTTGAAA 58.504 39.130 0.00 0.00 38.13 2.69
512 513 3.119065 CCACTGCCATGCATTATGTTGAA 60.119 43.478 0.00 0.00 38.13 2.69
513 514 2.427812 CCACTGCCATGCATTATGTTGA 59.572 45.455 0.00 0.00 38.13 3.18
514 515 2.166870 ACCACTGCCATGCATTATGTTG 59.833 45.455 0.00 0.00 38.13 3.33
515 516 2.428171 GACCACTGCCATGCATTATGTT 59.572 45.455 0.00 0.00 38.13 2.71
516 517 2.026641 GACCACTGCCATGCATTATGT 58.973 47.619 0.00 0.00 38.13 2.29
517 518 2.304092 AGACCACTGCCATGCATTATG 58.696 47.619 0.00 0.00 38.13 1.90
518 519 2.742428 AGACCACTGCCATGCATTAT 57.258 45.000 0.00 0.00 38.13 1.28
519 520 2.505407 ACTAGACCACTGCCATGCATTA 59.495 45.455 0.00 0.00 38.13 1.90
520 521 1.283029 ACTAGACCACTGCCATGCATT 59.717 47.619 0.00 0.00 38.13 3.56
521 522 0.914644 ACTAGACCACTGCCATGCAT 59.085 50.000 0.00 0.00 38.13 3.96
522 523 0.692476 AACTAGACCACTGCCATGCA 59.308 50.000 0.00 0.00 36.92 3.96
523 524 1.065854 AGAACTAGACCACTGCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
524 525 2.027745 ACAGAACTAGACCACTGCCATG 60.028 50.000 0.00 0.00 34.25 3.66
525 526 2.260822 ACAGAACTAGACCACTGCCAT 58.739 47.619 0.00 0.00 34.25 4.40
526 527 1.717032 ACAGAACTAGACCACTGCCA 58.283 50.000 0.00 0.00 34.25 4.92
527 528 2.415625 CGTACAGAACTAGACCACTGCC 60.416 54.545 0.00 0.00 34.25 4.85
528 529 2.486982 TCGTACAGAACTAGACCACTGC 59.513 50.000 0.00 0.00 34.25 4.40
529 530 4.966965 ATCGTACAGAACTAGACCACTG 57.033 45.455 0.00 2.96 36.58 3.66
530 531 6.179040 AGTTATCGTACAGAACTAGACCACT 58.821 40.000 0.00 0.00 31.69 4.00
531 532 6.434018 AGTTATCGTACAGAACTAGACCAC 57.566 41.667 0.00 0.00 31.69 4.16
532 533 7.334090 AGTAGTTATCGTACAGAACTAGACCA 58.666 38.462 10.11 0.00 36.58 4.02
533 534 7.710475 AGAGTAGTTATCGTACAGAACTAGACC 59.290 40.741 10.11 5.02 36.58 3.85
534 535 8.647143 AGAGTAGTTATCGTACAGAACTAGAC 57.353 38.462 10.11 8.18 36.58 2.59
535 536 9.311916 GAAGAGTAGTTATCGTACAGAACTAGA 57.688 37.037 10.11 0.00 36.58 2.43
536 537 8.268052 CGAAGAGTAGTTATCGTACAGAACTAG 58.732 40.741 10.11 0.00 36.58 2.57
537 538 7.223582 CCGAAGAGTAGTTATCGTACAGAACTA 59.776 40.741 7.01 7.01 35.17 2.24
538 539 6.036953 CCGAAGAGTAGTTATCGTACAGAACT 59.963 42.308 8.57 8.57 37.24 3.01
539 540 6.183360 ACCGAAGAGTAGTTATCGTACAGAAC 60.183 42.308 0.00 0.00 33.65 3.01
540 541 5.877012 ACCGAAGAGTAGTTATCGTACAGAA 59.123 40.000 0.00 0.00 33.65 3.02
541 542 5.423015 ACCGAAGAGTAGTTATCGTACAGA 58.577 41.667 0.00 0.00 33.65 3.41
542 543 5.731599 ACCGAAGAGTAGTTATCGTACAG 57.268 43.478 0.00 0.00 33.65 2.74
543 544 6.500684 AAACCGAAGAGTAGTTATCGTACA 57.499 37.500 0.00 0.00 33.65 2.90
544 545 7.803079 AAAAACCGAAGAGTAGTTATCGTAC 57.197 36.000 5.55 0.00 33.65 3.67
566 567 3.064271 GCGTCTGTACTGGTGTTCAAAAA 59.936 43.478 0.00 0.00 0.00 1.94
567 568 2.610374 GCGTCTGTACTGGTGTTCAAAA 59.390 45.455 0.00 0.00 0.00 2.44
568 569 2.206750 GCGTCTGTACTGGTGTTCAAA 58.793 47.619 0.00 0.00 0.00 2.69
569 570 1.137282 TGCGTCTGTACTGGTGTTCAA 59.863 47.619 0.00 0.00 0.00 2.69
570 571 0.747852 TGCGTCTGTACTGGTGTTCA 59.252 50.000 0.00 0.00 0.00 3.18
571 572 1.792949 CTTGCGTCTGTACTGGTGTTC 59.207 52.381 0.00 0.00 0.00 3.18
572 573 1.865865 CTTGCGTCTGTACTGGTGTT 58.134 50.000 0.00 0.00 0.00 3.32
573 574 0.600255 GCTTGCGTCTGTACTGGTGT 60.600 55.000 0.00 0.00 0.00 4.16
574 575 1.617755 CGCTTGCGTCTGTACTGGTG 61.618 60.000 6.86 0.00 0.00 4.17
575 576 1.372997 CGCTTGCGTCTGTACTGGT 60.373 57.895 6.86 0.00 0.00 4.00
576 577 2.730672 GCGCTTGCGTCTGTACTGG 61.731 63.158 16.38 0.00 0.00 4.00
577 578 1.284982 AAGCGCTTGCGTCTGTACTG 61.285 55.000 24.40 0.00 45.69 2.74
578 579 0.242825 TAAGCGCTTGCGTCTGTACT 59.757 50.000 32.23 3.76 45.69 2.73
579 580 1.278238 ATAAGCGCTTGCGTCTGTAC 58.722 50.000 32.23 0.00 45.69 2.90
580 581 2.159352 TGTATAAGCGCTTGCGTCTGTA 60.159 45.455 32.23 10.34 45.69 2.74
581 582 1.278238 GTATAAGCGCTTGCGTCTGT 58.722 50.000 32.23 6.01 45.69 3.41
582 583 1.277326 TGTATAAGCGCTTGCGTCTG 58.723 50.000 32.23 0.00 45.69 3.51
583 584 2.225068 ATGTATAAGCGCTTGCGTCT 57.775 45.000 32.23 11.40 45.69 4.18
584 585 2.160143 CGTATGTATAAGCGCTTGCGTC 60.160 50.000 32.23 18.59 45.69 5.19
585 586 1.784856 CGTATGTATAAGCGCTTGCGT 59.215 47.619 32.23 22.67 45.69 5.24
586 587 1.784856 ACGTATGTATAAGCGCTTGCG 59.215 47.619 32.23 21.63 45.69 4.85
587 588 2.659291 GCACGTATGTATAAGCGCTTGC 60.659 50.000 32.23 19.41 39.58 4.01
588 589 2.538037 TGCACGTATGTATAAGCGCTTG 59.462 45.455 32.23 15.14 0.00 4.01
589 590 2.816689 TGCACGTATGTATAAGCGCTT 58.183 42.857 27.97 27.97 0.00 4.68
590 591 2.502213 TGCACGTATGTATAAGCGCT 57.498 45.000 2.64 2.64 0.00 5.92
591 592 3.671459 TGTATGCACGTATGTATAAGCGC 59.329 43.478 0.00 0.00 35.47 5.92
592 593 6.088883 TGAATGTATGCACGTATGTATAAGCG 59.911 38.462 0.00 0.00 35.47 4.68
593 594 7.227461 GTGAATGTATGCACGTATGTATAAGC 58.773 38.462 0.00 0.00 35.47 3.09
594 595 7.148639 GGGTGAATGTATGCACGTATGTATAAG 60.149 40.741 0.00 0.00 35.47 1.73
595 596 6.647481 GGGTGAATGTATGCACGTATGTATAA 59.353 38.462 0.00 0.00 35.47 0.98
596 597 6.160684 GGGTGAATGTATGCACGTATGTATA 58.839 40.000 0.00 0.00 35.91 1.47
597 598 4.994852 GGGTGAATGTATGCACGTATGTAT 59.005 41.667 0.00 0.00 35.91 2.29
598 599 4.373527 GGGTGAATGTATGCACGTATGTA 58.626 43.478 0.00 0.00 35.91 2.29
599 600 3.202906 GGGTGAATGTATGCACGTATGT 58.797 45.455 0.00 0.00 35.91 2.29
600 601 2.548057 GGGGTGAATGTATGCACGTATG 59.452 50.000 0.00 0.00 35.91 2.39
601 602 2.438021 AGGGGTGAATGTATGCACGTAT 59.562 45.455 0.00 0.00 35.91 3.06
602 603 1.834896 AGGGGTGAATGTATGCACGTA 59.165 47.619 0.00 0.00 35.91 3.57
603 604 0.618458 AGGGGTGAATGTATGCACGT 59.382 50.000 0.00 0.00 35.91 4.49
604 605 2.613026 TAGGGGTGAATGTATGCACG 57.387 50.000 0.00 0.00 35.91 5.34
605 606 4.085357 TCATAGGGGTGAATGTATGCAC 57.915 45.455 0.00 0.00 0.00 4.57
606 607 4.460263 GTTCATAGGGGTGAATGTATGCA 58.540 43.478 0.00 0.00 39.99 3.96
607 608 3.498397 CGTTCATAGGGGTGAATGTATGC 59.502 47.826 0.00 0.00 39.99 3.14
608 609 3.498397 GCGTTCATAGGGGTGAATGTATG 59.502 47.826 9.71 0.00 43.66 2.39
609 610 3.135712 TGCGTTCATAGGGGTGAATGTAT 59.864 43.478 9.71 0.00 43.66 2.29
610 611 2.502130 TGCGTTCATAGGGGTGAATGTA 59.498 45.455 9.71 3.79 43.66 2.29
611 612 1.280710 TGCGTTCATAGGGGTGAATGT 59.719 47.619 9.71 0.00 43.66 2.71
612 613 1.670811 GTGCGTTCATAGGGGTGAATG 59.329 52.381 4.85 4.85 44.27 2.67
613 614 1.280710 TGTGCGTTCATAGGGGTGAAT 59.719 47.619 0.00 0.00 39.99 2.57
614 615 0.687920 TGTGCGTTCATAGGGGTGAA 59.312 50.000 0.00 0.00 35.84 3.18
615 616 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
616 617 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
617 618 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
618 619 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
619 620 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
620 621 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
621 622 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
622 623 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
623 624 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
624 625 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
625 626 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
626 627 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
630 631 4.562425 AGGGGGTGTGCGTGTGTG 62.562 66.667 0.00 0.00 0.00 3.82
631 632 4.250305 GAGGGGGTGTGCGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
637 638 3.352338 CTACGACGAGGGGGTGTGC 62.352 68.421 0.00 0.00 0.00 4.57
638 639 1.676635 TCTACGACGAGGGGGTGTG 60.677 63.158 0.00 0.00 0.00 3.82
639 640 1.676967 GTCTACGACGAGGGGGTGT 60.677 63.158 0.00 0.00 0.00 4.16
640 641 3.194719 GTCTACGACGAGGGGGTG 58.805 66.667 0.00 0.00 0.00 4.61
649 650 1.065251 GGAGATGTTCCCGTCTACGAC 59.935 57.143 3.65 0.00 40.37 4.34
650 651 1.386533 GGAGATGTTCCCGTCTACGA 58.613 55.000 3.65 0.00 40.37 3.43
651 652 3.940723 GGAGATGTTCCCGTCTACG 57.059 57.895 0.00 0.00 40.37 3.51
660 661 3.604582 CTTTCAGTGGGAGGAGATGTTC 58.395 50.000 0.00 0.00 0.00 3.18
661 662 2.290577 GCTTTCAGTGGGAGGAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
662 663 1.280421 GCTTTCAGTGGGAGGAGATGT 59.720 52.381 0.00 0.00 0.00 3.06
663 664 1.741732 CGCTTTCAGTGGGAGGAGATG 60.742 57.143 0.00 0.00 0.00 2.90
664 665 0.539051 CGCTTTCAGTGGGAGGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
665 666 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
666 667 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
667 668 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
668 669 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
669 670 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
670 671 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
671 672 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
682 683 0.878523 TTAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
683 684 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
703 704 4.402155 TGCTCGCATTATTCCTGGATTTTT 59.598 37.500 0.00 0.00 0.00 1.94
704 705 3.953612 TGCTCGCATTATTCCTGGATTTT 59.046 39.130 0.00 0.00 0.00 1.82
705 706 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
706 707 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
707 708 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
708 709 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
709 710 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
710 711 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
711 712 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
712 713 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
713 714 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
714 715 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
715 716 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
716 717 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
717 718 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
718 719 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
719 720 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
720 721 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
721 722 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
722 723 2.206576 AGGTTCAAATCCTGGTGCTC 57.793 50.000 0.00 0.00 33.62 4.26
723 724 2.242043 CAAGGTTCAAATCCTGGTGCT 58.758 47.619 0.00 0.00 35.27 4.40
724 725 1.273327 CCAAGGTTCAAATCCTGGTGC 59.727 52.381 0.00 0.00 35.27 5.01
725 726 2.297033 CACCAAGGTTCAAATCCTGGTG 59.703 50.000 8.91 8.91 42.07 4.17
726 727 2.597455 CACCAAGGTTCAAATCCTGGT 58.403 47.619 0.00 0.00 37.14 4.00
727 728 1.895131 CCACCAAGGTTCAAATCCTGG 59.105 52.381 0.00 0.00 35.27 4.45
728 729 1.895131 CCCACCAAGGTTCAAATCCTG 59.105 52.381 0.00 0.00 35.27 3.86
729 730 1.827245 GCCCACCAAGGTTCAAATCCT 60.827 52.381 0.00 0.00 36.81 3.24
730 731 0.608130 GCCCACCAAGGTTCAAATCC 59.392 55.000 0.00 0.00 34.66 3.01
731 732 1.273327 CAGCCCACCAAGGTTCAAATC 59.727 52.381 0.00 0.00 34.66 2.17
732 733 1.133199 TCAGCCCACCAAGGTTCAAAT 60.133 47.619 0.00 0.00 34.66 2.32
733 734 0.260230 TCAGCCCACCAAGGTTCAAA 59.740 50.000 0.00 0.00 34.66 2.69
734 735 0.178992 CTCAGCCCACCAAGGTTCAA 60.179 55.000 0.00 0.00 34.66 2.69
735 736 1.455849 CTCAGCCCACCAAGGTTCA 59.544 57.895 0.00 0.00 34.66 3.18
736 737 1.303643 CCTCAGCCCACCAAGGTTC 60.304 63.158 0.00 0.00 34.66 3.62
737 738 1.142688 ATCCTCAGCCCACCAAGGTT 61.143 55.000 0.00 0.00 34.66 3.50
738 739 0.253160 TATCCTCAGCCCACCAAGGT 60.253 55.000 0.00 0.00 34.66 3.50
739 740 0.181350 GTATCCTCAGCCCACCAAGG 59.819 60.000 0.00 0.00 37.03 3.61
740 741 0.181350 GGTATCCTCAGCCCACCAAG 59.819 60.000 0.00 0.00 0.00 3.61
741 742 0.548926 TGGTATCCTCAGCCCACCAA 60.549 55.000 0.00 0.00 36.36 3.67
742 743 1.082019 TGGTATCCTCAGCCCACCA 59.918 57.895 0.00 0.00 36.94 4.17
743 744 0.983378 AGTGGTATCCTCAGCCCACC 60.983 60.000 4.15 0.00 46.84 4.61
744 745 0.179000 CAGTGGTATCCTCAGCCCAC 59.821 60.000 0.00 0.00 46.17 4.61
745 746 0.252696 ACAGTGGTATCCTCAGCCCA 60.253 55.000 0.00 0.00 0.00 5.36
746 747 0.466124 GACAGTGGTATCCTCAGCCC 59.534 60.000 0.00 0.00 0.00 5.19
747 748 0.466124 GGACAGTGGTATCCTCAGCC 59.534 60.000 0.00 0.00 31.75 4.85
748 749 0.466124 GGGACAGTGGTATCCTCAGC 59.534 60.000 0.00 0.00 35.15 4.26
749 750 2.035632 GAGGGACAGTGGTATCCTCAG 58.964 57.143 14.38 0.00 42.50 3.35
750 751 1.646447 AGAGGGACAGTGGTATCCTCA 59.354 52.381 18.73 0.00 44.02 3.86
751 752 2.463047 AGAGGGACAGTGGTATCCTC 57.537 55.000 12.47 12.47 42.91 3.71
752 753 3.630311 GGTTAGAGGGACAGTGGTATCCT 60.630 52.174 0.00 0.00 35.15 3.24
753 754 2.699321 GGTTAGAGGGACAGTGGTATCC 59.301 54.545 0.00 0.00 0.00 2.59
754 755 3.371965 TGGTTAGAGGGACAGTGGTATC 58.628 50.000 0.00 0.00 0.00 2.24
755 756 3.484953 TGGTTAGAGGGACAGTGGTAT 57.515 47.619 0.00 0.00 0.00 2.73
756 757 3.371965 GATGGTTAGAGGGACAGTGGTA 58.628 50.000 0.00 0.00 0.00 3.25
757 758 2.188817 GATGGTTAGAGGGACAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
758 759 1.486726 GGATGGTTAGAGGGACAGTGG 59.513 57.143 0.00 0.00 0.00 4.00
759 760 2.187958 TGGATGGTTAGAGGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
760 761 2.572104 GTTGGATGGTTAGAGGGACAGT 59.428 50.000 0.00 0.00 0.00 3.55
761 762 2.092914 GGTTGGATGGTTAGAGGGACAG 60.093 54.545 0.00 0.00 0.00 3.51
762 763 1.913419 GGTTGGATGGTTAGAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
763 764 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
764 765 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
765 766 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
766 767 3.244911 ACTTGTGGTTGGATGGTTAGAGG 60.245 47.826 0.00 0.00 0.00 3.69
767 768 4.003648 GACTTGTGGTTGGATGGTTAGAG 58.996 47.826 0.00 0.00 0.00 2.43
768 769 3.392947 TGACTTGTGGTTGGATGGTTAGA 59.607 43.478 0.00 0.00 0.00 2.10
769 770 3.750371 TGACTTGTGGTTGGATGGTTAG 58.250 45.455 0.00 0.00 0.00 2.34
770 771 3.137544 ACTGACTTGTGGTTGGATGGTTA 59.862 43.478 0.00 0.00 0.00 2.85
771 772 2.091885 ACTGACTTGTGGTTGGATGGTT 60.092 45.455 0.00 0.00 0.00 3.67
772 773 1.494721 ACTGACTTGTGGTTGGATGGT 59.505 47.619 0.00 0.00 0.00 3.55
773 774 2.276732 ACTGACTTGTGGTTGGATGG 57.723 50.000 0.00 0.00 0.00 3.51
774 775 3.003689 GTGAACTGACTTGTGGTTGGATG 59.996 47.826 0.00 0.00 0.00 3.51
775 776 3.214328 GTGAACTGACTTGTGGTTGGAT 58.786 45.455 0.00 0.00 0.00 3.41
776 777 2.026729 TGTGAACTGACTTGTGGTTGGA 60.027 45.455 0.00 0.00 0.00 3.53
777 778 2.364632 TGTGAACTGACTTGTGGTTGG 58.635 47.619 0.00 0.00 0.00 3.77
778 779 3.440173 AGTTGTGAACTGACTTGTGGTTG 59.560 43.478 0.00 0.00 41.01 3.77
779 780 3.686016 AGTTGTGAACTGACTTGTGGTT 58.314 40.909 0.00 0.00 41.01 3.67
780 781 3.350219 AGTTGTGAACTGACTTGTGGT 57.650 42.857 0.00 0.00 41.01 4.16
781 782 4.442706 AGTAGTTGTGAACTGACTTGTGG 58.557 43.478 0.00 0.00 42.84 4.17
782 783 5.352284 AGAGTAGTTGTGAACTGACTTGTG 58.648 41.667 0.00 0.00 42.84 3.33
783 784 5.599999 AGAGTAGTTGTGAACTGACTTGT 57.400 39.130 0.00 0.00 42.84 3.16
784 785 5.174035 CGAAGAGTAGTTGTGAACTGACTTG 59.826 44.000 0.00 0.00 42.84 3.16
785 786 5.282510 CGAAGAGTAGTTGTGAACTGACTT 58.717 41.667 0.00 0.00 42.84 3.01
786 787 4.261656 CCGAAGAGTAGTTGTGAACTGACT 60.262 45.833 0.00 0.00 42.84 3.41
787 788 3.982058 CCGAAGAGTAGTTGTGAACTGAC 59.018 47.826 0.00 0.00 42.84 3.51
788 789 3.635373 ACCGAAGAGTAGTTGTGAACTGA 59.365 43.478 0.00 0.00 42.84 3.41
789 790 3.978687 ACCGAAGAGTAGTTGTGAACTG 58.021 45.455 0.00 0.00 42.84 3.16
790 791 4.667519 AACCGAAGAGTAGTTGTGAACT 57.332 40.909 0.00 0.00 45.40 3.01
791 792 5.499047 CAAAACCGAAGAGTAGTTGTGAAC 58.501 41.667 0.00 0.00 31.57 3.18
792 793 4.573201 CCAAAACCGAAGAGTAGTTGTGAA 59.427 41.667 0.00 0.00 31.57 3.18
793 794 4.124238 CCAAAACCGAAGAGTAGTTGTGA 58.876 43.478 0.00 0.00 31.57 3.58
794 795 3.875134 ACCAAAACCGAAGAGTAGTTGTG 59.125 43.478 0.00 0.00 0.00 3.33
795 796 3.875134 CACCAAAACCGAAGAGTAGTTGT 59.125 43.478 0.00 0.00 0.00 3.32
796 797 3.875134 ACACCAAAACCGAAGAGTAGTTG 59.125 43.478 0.00 0.00 0.00 3.16
799 800 4.684703 CACTACACCAAAACCGAAGAGTAG 59.315 45.833 0.00 0.00 35.18 2.57
818 819 3.642141 TGTAGCACCATGATCCTCACTA 58.358 45.455 0.00 0.00 0.00 2.74
832 833 2.295909 TGCAAATGTTCCCTTGTAGCAC 59.704 45.455 0.00 0.00 0.00 4.40
835 836 5.452078 TTTCTGCAAATGTTCCCTTGTAG 57.548 39.130 0.00 0.00 36.82 2.74
864 866 1.537348 GGAACGTGTGTGTGCTCTGTA 60.537 52.381 0.00 0.00 0.00 2.74
890 892 8.377681 CAATACTAAAAGAGCATTGCAACATTG 58.622 33.333 11.91 0.00 0.00 2.82
1155 1212 8.017946 GCTAAGAACTACCTGTTTCAGATTTTG 58.982 37.037 0.00 0.00 39.30 2.44
1169 1226 6.927294 ATTATGCACAAGCTAAGAACTACC 57.073 37.500 0.00 0.00 42.74 3.18
1174 1231 7.010183 GTCTCGTTATTATGCACAAGCTAAGAA 59.990 37.037 0.00 0.00 42.74 2.52
1178 1235 5.748630 CAGTCTCGTTATTATGCACAAGCTA 59.251 40.000 0.00 0.00 42.74 3.32
1225 1282 3.559238 AATTGTGGCGAAAGTAGCAAG 57.441 42.857 0.00 0.00 36.08 4.01
1367 1449 9.658799 CCCTTTCTATACCATATGAACACATAG 57.341 37.037 3.65 3.99 31.36 2.23
1376 1458 7.798710 TCTCTTCCCCTTTCTATACCATATG 57.201 40.000 0.00 0.00 0.00 1.78
1540 1622 3.181423 ACCATAACCTCCTTTTCCAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
1597 1679 1.269257 GCAAGAACTTCACAGCAACCC 60.269 52.381 0.00 0.00 0.00 4.11
1664 1746 4.664688 AACATGAGAGGTCCTTCCAATT 57.335 40.909 0.00 0.00 39.02 2.32
1805 1888 1.488393 GCATATAGCCTCTCCCATCCC 59.512 57.143 0.00 0.00 37.23 3.85
1838 1921 1.091771 ATTCGAGGCCACGAGCAATG 61.092 55.000 24.17 0.00 46.50 2.82
1892 1975 6.127897 GGATATTTTGGGGCTTGATATCGAAG 60.128 42.308 0.00 4.67 32.89 3.79
2105 2188 2.472029 CTACCTCCAACCATCTCCAGT 58.528 52.381 0.00 0.00 0.00 4.00
2234 2317 2.131183 CTCGCGATCTCCTCAATTTCC 58.869 52.381 10.36 0.00 0.00 3.13
2273 2356 4.036971 GGTAACACTTGTATGCACCACAAA 59.963 41.667 14.65 0.25 35.57 2.83
2458 2541 2.547211 GAGAGATAAGCGTGCATGCAAT 59.453 45.455 31.36 23.23 37.31 3.56
2463 2547 4.948847 TGTAATGAGAGATAAGCGTGCAT 58.051 39.130 0.00 0.00 0.00 3.96
2589 2673 2.121948 TCACAAGGCCTATCTGCTCAT 58.878 47.619 5.16 0.00 0.00 2.90
2626 2710 5.124457 CACCTTCTATCAGTGTTGGAAATGG 59.876 44.000 2.18 3.65 0.00 3.16
2641 2725 4.844349 ACAGTAACATGCCACCTTCTAT 57.156 40.909 0.00 0.00 0.00 1.98
2736 2827 0.463620 GGCTGCTCTTGACTCTAGGG 59.536 60.000 0.00 0.00 0.00 3.53
2757 2848 4.891168 TCGGTAACTTAGGATGCTGTCATA 59.109 41.667 0.00 0.00 31.96 2.15
2804 2895 5.750067 GCAGTTGAAACACAAAACTCATCAT 59.250 36.000 0.00 0.00 40.36 2.45
2932 3027 2.930682 GCAAGTAGTTCTTCGCTAAGGG 59.069 50.000 0.00 0.00 33.63 3.95
2969 3064 6.182039 TGTGTTCTGCTATGCATACTTTTC 57.818 37.500 1.16 0.00 38.13 2.29
3144 3239 5.159273 TCCTCATTACTGTGTTGTATGCA 57.841 39.130 0.00 0.00 0.00 3.96
3368 3464 2.032924 CCGAGTTTGTGAAGGTTTGGAC 59.967 50.000 0.00 0.00 0.00 4.02
3395 3491 1.083489 GACGAAATTGTGGATCGCCA 58.917 50.000 0.00 0.00 43.47 5.69
3412 3508 3.386078 TCATGGTCTAGAGCATCCAAGAC 59.614 47.826 29.88 0.27 46.57 3.01
3566 3662 2.222596 CGAGGACTTTGAGCGAAAATCG 60.223 50.000 0.00 0.00 43.89 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.