Multiple sequence alignment - TraesCS3D01G044900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G044900 chr3D 100.000 2840 0 0 1 2840 17347671 17350510 0.000000e+00 5245.0
1 TraesCS3D01G044900 chr3D 72.937 824 161 40 986 1771 18829894 18830693 2.200000e-56 230.0
2 TraesCS3D01G044900 chr3D 93.878 49 3 0 751 799 18829671 18829719 1.090000e-09 75.0
3 TraesCS3D01G044900 chr3B 91.242 1473 68 24 560 2005 24919599 24921037 0.000000e+00 1949.0
4 TraesCS3D01G044900 chr3B 85.163 674 88 11 1112 1776 30529243 30529913 0.000000e+00 680.0
5 TraesCS3D01G044900 chr3B 86.853 464 35 14 1 440 24917648 24918109 1.970000e-136 496.0
6 TraesCS3D01G044900 chr3B 92.157 102 7 1 2236 2336 24921579 24921680 2.950000e-30 143.0
7 TraesCS3D01G044900 chr3B 90.217 92 7 1 1989 2078 24921111 24921202 4.970000e-23 119.0
8 TraesCS3D01G044900 chr3B 96.875 32 1 0 454 485 24918153 24918184 1.000000e-03 54.7
9 TraesCS3D01G044900 chr3A 77.090 1244 182 51 559 1765 19500771 19499594 8.640000e-175 623.0
10 TraesCS3D01G044900 chr3A 87.205 297 26 7 559 853 19342465 19342751 7.590000e-86 327.0
11 TraesCS3D01G044900 chr3A 90.099 202 14 5 255 453 19503496 19503298 1.010000e-64 257.0
12 TraesCS3D01G044900 chr3A 91.667 120 9 1 2463 2582 29030532 29030414 6.290000e-37 165.0
13 TraesCS3D01G044900 chr7D 80.595 773 126 11 1028 1776 105682742 105683514 2.450000e-160 575.0
14 TraesCS3D01G044900 chr4D 90.251 359 23 4 2463 2809 93384733 93385091 2.580000e-125 459.0
15 TraesCS3D01G044900 chr7A 89.369 301 19 5 2460 2747 19096868 19097168 1.610000e-97 366.0
16 TraesCS3D01G044900 chr7A 92.273 220 17 0 2621 2840 59297596 59297815 2.120000e-81 313.0
17 TraesCS3D01G044900 chr7A 93.333 120 8 0 2463 2582 19097927 19097808 8.080000e-41 178.0
18 TraesCS3D01G044900 chr6A 88.546 227 23 1 2614 2840 605395385 605395608 3.610000e-69 272.0
19 TraesCS3D01G044900 chr2A 86.528 193 26 0 2648 2840 14934059 14934251 2.220000e-51 213.0
20 TraesCS3D01G044900 chr2D 88.202 178 9 5 2460 2625 15191172 15191349 4.800000e-48 202.0
21 TraesCS3D01G044900 chr2D 92.683 123 9 0 2460 2582 3000418 3000540 8.080000e-41 178.0
22 TraesCS3D01G044900 chr1D 93.333 135 6 3 2458 2591 392699201 392699069 2.230000e-46 196.0
23 TraesCS3D01G044900 chr1A 94.309 123 6 1 2460 2582 180959162 180959283 1.340000e-43 187.0
24 TraesCS3D01G044900 chr4A 93.548 124 7 1 2460 2582 555809181 555809304 1.740000e-42 183.0
25 TraesCS3D01G044900 chr5B 91.736 121 8 2 2463 2582 507054385 507054504 1.750000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G044900 chr3D 17347671 17350510 2839 False 5245.00 5245 100.0000 1 2840 1 chr3D.!!$F1 2839
1 TraesCS3D01G044900 chr3B 30529243 30529913 670 False 680.00 680 85.1630 1112 1776 1 chr3B.!!$F1 664
2 TraesCS3D01G044900 chr3B 24917648 24921680 4032 False 552.34 1949 91.4688 1 2336 5 chr3B.!!$F2 2335
3 TraesCS3D01G044900 chr3A 19499594 19503496 3902 True 440.00 623 83.5945 255 1765 2 chr3A.!!$R2 1510
4 TraesCS3D01G044900 chr7D 105682742 105683514 772 False 575.00 575 80.5950 1028 1776 1 chr7D.!!$F1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 3898 0.036306 TCCCGGTGCTTTCCTTCTTC 59.964 55.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 5674 0.033796 CCTGCCTTGACCCATGACAT 60.034 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.270839 ACTGGCGCACAACAAGATACT 60.271 47.619 10.83 0.00 0.00 2.12
68 69 7.886405 ACTAAATTAGAAAGACGTCTTGACC 57.114 36.000 30.33 21.03 36.12 4.02
69 70 7.439381 ACTAAATTAGAAAGACGTCTTGACCA 58.561 34.615 30.33 15.82 36.12 4.02
70 71 8.095169 ACTAAATTAGAAAGACGTCTTGACCAT 58.905 33.333 30.33 15.15 36.12 3.55
71 72 6.969828 AATTAGAAAGACGTCTTGACCATC 57.030 37.500 30.33 22.29 36.12 3.51
72 73 2.947852 AGAAAGACGTCTTGACCATCG 58.052 47.619 30.33 0.00 36.12 3.84
73 74 2.557056 AGAAAGACGTCTTGACCATCGA 59.443 45.455 30.33 0.00 36.12 3.59
74 75 2.349297 AAGACGTCTTGACCATCGAC 57.651 50.000 29.24 0.00 34.38 4.20
76 77 4.861883 CGTCTTGACCATCGACGT 57.138 55.556 11.58 0.00 43.82 4.34
77 78 2.349843 CGTCTTGACCATCGACGTG 58.650 57.895 0.00 0.00 43.82 4.49
78 79 0.386858 CGTCTTGACCATCGACGTGT 60.387 55.000 0.00 0.00 43.82 4.49
79 80 1.060713 GTCTTGACCATCGACGTGTG 58.939 55.000 0.00 0.00 0.00 3.82
80 81 0.038618 TCTTGACCATCGACGTGTGG 60.039 55.000 16.69 16.69 41.35 4.17
81 82 0.038618 CTTGACCATCGACGTGTGGA 60.039 55.000 22.52 1.11 38.86 4.02
82 83 0.038618 TTGACCATCGACGTGTGGAG 60.039 55.000 22.52 4.21 38.86 3.86
83 84 0.891904 TGACCATCGACGTGTGGAGA 60.892 55.000 22.52 9.87 38.86 3.71
84 85 0.242825 GACCATCGACGTGTGGAGAA 59.757 55.000 22.52 0.00 38.86 2.87
85 86 0.677288 ACCATCGACGTGTGGAGAAA 59.323 50.000 22.52 0.00 38.86 2.52
86 87 1.275291 ACCATCGACGTGTGGAGAAAT 59.725 47.619 22.52 3.59 38.86 2.17
87 88 2.494471 ACCATCGACGTGTGGAGAAATA 59.506 45.455 22.52 0.00 38.86 1.40
88 89 2.858344 CCATCGACGTGTGGAGAAATAC 59.142 50.000 14.18 0.00 37.72 1.89
100 101 4.801516 GTGGAGAAATACGAGAAAGAGCTC 59.198 45.833 5.27 5.27 0.00 4.09
101 102 4.462834 TGGAGAAATACGAGAAAGAGCTCA 59.537 41.667 17.77 0.00 34.56 4.26
102 103 5.127845 TGGAGAAATACGAGAAAGAGCTCAT 59.872 40.000 17.77 0.00 34.56 2.90
103 104 6.321435 TGGAGAAATACGAGAAAGAGCTCATA 59.679 38.462 17.77 0.00 34.56 2.15
107 147 6.472686 AATACGAGAAAGAGCTCATAGGTT 57.527 37.500 17.77 0.00 34.56 3.50
174 218 7.764695 TGAAATATACCACACATCAGTTACG 57.235 36.000 0.00 0.00 0.00 3.18
176 220 6.474140 AATATACCACACATCAGTTACGGA 57.526 37.500 0.00 0.00 0.00 4.69
192 236 3.521947 ACGGAATAGTTGGTAGTGAGC 57.478 47.619 0.00 0.00 0.00 4.26
198 242 1.329256 AGTTGGTAGTGAGCACGAGT 58.671 50.000 0.00 0.00 36.20 4.18
199 243 1.000163 AGTTGGTAGTGAGCACGAGTG 60.000 52.381 0.00 0.00 36.20 3.51
200 244 1.000607 GTTGGTAGTGAGCACGAGTGA 60.001 52.381 7.50 0.00 36.20 3.41
203 247 1.469940 GGTAGTGAGCACGAGTGATGG 60.470 57.143 7.50 0.00 36.20 3.51
204 248 0.817654 TAGTGAGCACGAGTGATGGG 59.182 55.000 7.50 0.00 36.20 4.00
206 250 1.913262 TGAGCACGAGTGATGGGGT 60.913 57.895 7.50 0.00 0.00 4.95
207 251 1.448540 GAGCACGAGTGATGGGGTG 60.449 63.158 7.50 0.00 0.00 4.61
253 299 2.702270 AGGAGCCTTTGGGATGTTTT 57.298 45.000 0.00 0.00 33.58 2.43
323 370 2.741486 TAGTCAACCTTGCCGTGCCC 62.741 60.000 0.00 0.00 0.00 5.36
392 442 6.529829 GCTCTAGATAGAAATAGAACCATGCG 59.470 42.308 0.00 0.00 0.00 4.73
406 456 2.053865 ATGCGCTGATTTGGGTGGG 61.054 57.895 9.73 0.00 0.00 4.61
481 570 0.381089 ACGTACGCATACAGAGGCTC 59.619 55.000 16.72 6.34 0.00 4.70
494 583 1.550072 AGAGGCTCAACTTGCTCTCTC 59.450 52.381 18.26 0.00 35.04 3.20
498 587 2.417243 GGCTCAACTTGCTCTCTCTCTC 60.417 54.545 0.00 0.00 0.00 3.20
521 610 2.988010 TTTGCATCGATACAGAGGCT 57.012 45.000 0.00 0.00 46.69 4.58
522 611 4.400529 TTTTGCATCGATACAGAGGCTA 57.599 40.909 0.00 0.00 46.69 3.93
548 643 1.197721 GCATGCAAGCACTCGTTTAGT 59.802 47.619 14.21 0.00 39.81 2.24
551 3076 3.332761 TGCAAGCACTCGTTTAGTTTG 57.667 42.857 0.00 0.00 35.76 2.93
555 3080 3.334272 AGCACTCGTTTAGTTTGCAAC 57.666 42.857 0.00 0.00 35.76 4.17
628 3606 1.201845 CGCGGCCGTTTTACTTTACTC 60.202 52.381 28.70 3.51 0.00 2.59
641 3619 1.659098 CTTTACTCGCTCGCGGAAAAT 59.341 47.619 6.13 0.00 40.25 1.82
727 3707 2.362632 CGACCTCCCTTCTCCGGT 60.363 66.667 0.00 0.00 0.00 5.28
730 3710 0.903454 GACCTCCCTTCTCCGGTCAA 60.903 60.000 0.00 0.00 44.11 3.18
733 3713 1.195115 CTCCCTTCTCCGGTCAATGA 58.805 55.000 0.00 0.00 0.00 2.57
736 3716 1.210478 CCCTTCTCCGGTCAATGACAT 59.790 52.381 15.86 0.00 33.68 3.06
737 3717 2.283298 CCTTCTCCGGTCAATGACATG 58.717 52.381 15.86 6.79 33.68 3.21
744 3724 2.440065 TCAATGACATGCGGGCCC 60.440 61.111 13.57 13.57 0.00 5.80
836 3826 1.137513 CAAACTCCCTGACGACGAAC 58.862 55.000 0.00 0.00 0.00 3.95
885 3892 0.608035 TGAATGTCCCGGTGCTTTCC 60.608 55.000 0.00 0.00 0.00 3.13
890 3897 0.250770 GTCCCGGTGCTTTCCTTCTT 60.251 55.000 0.00 0.00 0.00 2.52
891 3898 0.036306 TCCCGGTGCTTTCCTTCTTC 59.964 55.000 0.00 0.00 0.00 2.87
901 3908 4.190772 GCTTTCCTTCTTCTCATCCTCAG 58.809 47.826 0.00 0.00 0.00 3.35
921 3930 2.039084 AGCATCCTTTCCTCTCAACGTT 59.961 45.455 0.00 0.00 0.00 3.99
922 3931 3.260884 AGCATCCTTTCCTCTCAACGTTA 59.739 43.478 0.00 0.00 0.00 3.18
923 3932 3.371285 GCATCCTTTCCTCTCAACGTTAC 59.629 47.826 0.00 0.00 0.00 2.50
924 3933 3.672767 TCCTTTCCTCTCAACGTTACC 57.327 47.619 0.00 0.00 0.00 2.85
925 3934 2.301009 TCCTTTCCTCTCAACGTTACCC 59.699 50.000 0.00 0.00 0.00 3.69
926 3935 2.038033 CCTTTCCTCTCAACGTTACCCA 59.962 50.000 0.00 0.00 0.00 4.51
927 3936 3.495453 CCTTTCCTCTCAACGTTACCCAA 60.495 47.826 0.00 0.00 0.00 4.12
928 3937 3.842007 TTCCTCTCAACGTTACCCAAA 57.158 42.857 0.00 0.00 0.00 3.28
929 3938 4.360951 TTCCTCTCAACGTTACCCAAAT 57.639 40.909 0.00 0.00 0.00 2.32
930 3939 3.934068 TCCTCTCAACGTTACCCAAATC 58.066 45.455 0.00 0.00 0.00 2.17
931 3940 3.581332 TCCTCTCAACGTTACCCAAATCT 59.419 43.478 0.00 0.00 0.00 2.40
932 3941 3.933332 CCTCTCAACGTTACCCAAATCTC 59.067 47.826 0.00 0.00 0.00 2.75
935 3944 4.773674 TCTCAACGTTACCCAAATCTCCTA 59.226 41.667 0.00 0.00 0.00 2.94
1108 4124 3.887335 ATAAACACCACCGCGCCGT 62.887 57.895 0.00 0.00 0.00 5.68
1166 4221 2.050350 CCTACCCGTTCTGGCTCGA 61.050 63.158 0.00 0.00 35.87 4.04
1324 4379 2.803155 GATCACCAACGCCCAGCTCA 62.803 60.000 0.00 0.00 0.00 4.26
1350 4405 2.163390 CACCTGCGACATCGAGCTG 61.163 63.158 5.26 0.00 43.02 4.24
1558 4619 2.679996 AAGACAAATGGGGGCCGC 60.680 61.111 14.65 14.65 0.00 6.53
1590 4651 1.447663 CACGGTGTCGATGATGCCA 60.448 57.895 0.00 0.00 40.11 4.92
1647 4712 2.892425 CGGCTGATGAAGGACGGC 60.892 66.667 0.00 0.00 37.63 5.68
1729 4794 1.541588 GGGTTAACACCGTCTACGACT 59.458 52.381 8.10 0.00 45.39 4.18
1730 4795 2.414691 GGGTTAACACCGTCTACGACTC 60.415 54.545 8.10 0.00 45.39 3.36
1734 4799 0.879765 ACACCGTCTACGACTCCTTG 59.120 55.000 3.65 0.00 43.02 3.61
1819 4884 8.943002 TCATCTCGGTTTTACCTCTTTTTAATC 58.057 33.333 0.00 0.00 35.66 1.75
1823 4888 6.369615 TCGGTTTTACCTCTTTTTAATCTCCG 59.630 38.462 0.00 0.00 35.66 4.63
1839 4904 5.968528 ATCTCCGTAGACCTGCTAATTAG 57.031 43.478 8.20 8.20 33.57 1.73
1840 4905 5.045012 TCTCCGTAGACCTGCTAATTAGA 57.955 43.478 16.85 1.02 0.00 2.10
1877 4951 7.413988 CGGAAATTATCTCGCATGCCATTATTA 60.414 37.037 13.15 0.00 0.00 0.98
1878 4952 7.912250 GGAAATTATCTCGCATGCCATTATTAG 59.088 37.037 13.15 0.00 0.00 1.73
1879 4953 7.928307 AATTATCTCGCATGCCATTATTAGT 57.072 32.000 13.15 0.00 0.00 2.24
1880 4954 9.448438 AAATTATCTCGCATGCCATTATTAGTA 57.552 29.630 13.15 0.00 0.00 1.82
1881 4955 9.618890 AATTATCTCGCATGCCATTATTAGTAT 57.381 29.630 13.15 0.00 0.00 2.12
1882 4956 8.648557 TTATCTCGCATGCCATTATTAGTATC 57.351 34.615 13.15 0.00 0.00 2.24
1911 4985 3.186119 CCTCAAACGTGTTTGCAAATGT 58.814 40.909 16.21 11.58 46.92 2.71
1913 4987 4.103365 TCAAACGTGTTTGCAAATGTCT 57.897 36.364 16.21 0.00 46.92 3.41
1921 4996 5.504010 CGTGTTTGCAAATGTCTAAGTGACT 60.504 40.000 16.21 0.00 45.54 3.41
1923 4998 4.488126 TTGCAAATGTCTAAGTGACTGC 57.512 40.909 0.00 0.00 45.54 4.40
1954 5029 5.899120 ACGGACAGGCTATATGTATGTAG 57.101 43.478 0.00 0.00 0.00 2.74
1979 5060 1.550072 AGCCATGCCATGTGGTTAAAC 59.450 47.619 3.63 0.00 39.01 2.01
2006 5179 9.026074 CAACGTTTAAAGGAACACATTTGTTAT 57.974 29.630 14.50 0.00 46.43 1.89
2008 5181 9.589111 ACGTTTAAAGGAACACATTTGTTATTT 57.411 25.926 14.50 5.20 46.43 1.40
2054 5227 5.043903 TCGGATCAGTTGATTCTCGATTTC 58.956 41.667 0.00 0.00 34.37 2.17
2058 5231 6.261826 GGATCAGTTGATTCTCGATTTCCATT 59.738 38.462 0.00 0.00 34.37 3.16
2065 5238 8.397906 GTTGATTCTCGATTTCCATTGACAATA 58.602 33.333 0.00 0.00 0.00 1.90
2066 5239 7.919690 TGATTCTCGATTTCCATTGACAATAC 58.080 34.615 0.00 0.00 0.00 1.89
2068 5241 4.270084 TCTCGATTTCCATTGACAATACGC 59.730 41.667 0.00 0.00 0.00 4.42
2078 5251 3.165058 TGACAATACGCTGTGGAGATC 57.835 47.619 0.00 0.00 0.00 2.75
2080 5253 1.831106 ACAATACGCTGTGGAGATCCA 59.169 47.619 0.00 0.00 45.30 3.41
2089 5262 2.367202 TGGAGATCCAAGGTCCCGC 61.367 63.158 0.00 0.00 44.35 6.13
2090 5263 2.367202 GGAGATCCAAGGTCCCGCA 61.367 63.158 0.00 0.00 35.64 5.69
2091 5264 1.700042 GGAGATCCAAGGTCCCGCAT 61.700 60.000 0.00 0.00 35.64 4.73
2092 5265 0.181350 GAGATCCAAGGTCCCGCATT 59.819 55.000 0.00 0.00 0.00 3.56
2093 5266 1.416401 GAGATCCAAGGTCCCGCATTA 59.584 52.381 0.00 0.00 0.00 1.90
2095 5268 1.416401 GATCCAAGGTCCCGCATTAGA 59.584 52.381 0.00 0.00 0.00 2.10
2096 5269 1.507140 TCCAAGGTCCCGCATTAGAT 58.493 50.000 0.00 0.00 0.00 1.98
2097 5270 2.684943 TCCAAGGTCCCGCATTAGATA 58.315 47.619 0.00 0.00 0.00 1.98
2098 5271 2.632996 TCCAAGGTCCCGCATTAGATAG 59.367 50.000 0.00 0.00 0.00 2.08
2099 5272 2.417719 CAAGGTCCCGCATTAGATAGC 58.582 52.381 0.00 0.00 0.00 2.97
2100 5273 1.717032 AGGTCCCGCATTAGATAGCA 58.283 50.000 0.00 0.00 0.00 3.49
2101 5274 2.047061 AGGTCCCGCATTAGATAGCAA 58.953 47.619 0.00 0.00 0.00 3.91
2103 5276 2.143925 GTCCCGCATTAGATAGCAACC 58.856 52.381 0.00 0.00 0.00 3.77
2104 5277 2.047061 TCCCGCATTAGATAGCAACCT 58.953 47.619 0.00 0.00 0.00 3.50
2107 5280 1.532868 CGCATTAGATAGCAACCTGGC 59.467 52.381 0.00 0.00 0.00 4.85
2108 5281 2.575532 GCATTAGATAGCAACCTGGCA 58.424 47.619 0.00 0.00 35.83 4.92
2109 5282 2.951642 GCATTAGATAGCAACCTGGCAA 59.048 45.455 0.00 0.00 35.83 4.52
2110 5283 3.004106 GCATTAGATAGCAACCTGGCAAG 59.996 47.826 0.00 0.00 35.83 4.01
2111 5284 4.454678 CATTAGATAGCAACCTGGCAAGA 58.545 43.478 0.00 0.00 35.83 3.02
2112 5285 2.706339 AGATAGCAACCTGGCAAGAG 57.294 50.000 0.00 0.00 35.83 2.85
2113 5286 1.211457 AGATAGCAACCTGGCAAGAGG 59.789 52.381 0.00 0.00 39.28 3.69
2115 5288 1.651737 TAGCAACCTGGCAAGAGGTA 58.348 50.000 0.00 0.00 46.29 3.08
2116 5289 0.326264 AGCAACCTGGCAAGAGGTAG 59.674 55.000 0.00 0.00 46.29 3.18
2117 5290 0.678048 GCAACCTGGCAAGAGGTAGG 60.678 60.000 0.00 0.00 46.29 3.18
2118 5291 0.984230 CAACCTGGCAAGAGGTAGGA 59.016 55.000 0.00 0.00 46.29 2.94
2119 5292 1.351017 CAACCTGGCAAGAGGTAGGAA 59.649 52.381 0.00 0.00 46.29 3.36
2120 5293 1.972588 ACCTGGCAAGAGGTAGGAAT 58.027 50.000 0.00 0.00 45.09 3.01
2121 5294 1.561542 ACCTGGCAAGAGGTAGGAATG 59.438 52.381 0.00 0.00 45.09 2.67
2122 5295 1.133976 CCTGGCAAGAGGTAGGAATGG 60.134 57.143 0.00 0.00 31.91 3.16
2123 5296 0.255890 TGGCAAGAGGTAGGAATGGC 59.744 55.000 0.00 0.00 37.12 4.40
2124 5297 0.815615 GGCAAGAGGTAGGAATGGCG 60.816 60.000 0.00 0.00 0.00 5.69
2125 5298 1.440145 GCAAGAGGTAGGAATGGCGC 61.440 60.000 0.00 0.00 0.00 6.53
2126 5299 1.144057 AAGAGGTAGGAATGGCGCG 59.856 57.895 0.00 0.00 0.00 6.86
2127 5300 2.280186 GAGGTAGGAATGGCGCGG 60.280 66.667 8.83 0.00 0.00 6.46
2128 5301 3.081409 AGGTAGGAATGGCGCGGT 61.081 61.111 8.83 0.00 0.00 5.68
2132 5305 3.733344 TAGGAATGGCGCGGTGAGC 62.733 63.158 8.83 0.00 43.95 4.26
2142 5315 1.450134 GCGGTGAGCCATGATGTCA 60.450 57.895 0.00 0.00 40.81 3.58
2144 5317 1.423721 CGGTGAGCCATGATGTCACG 61.424 60.000 9.25 3.23 41.33 4.35
2147 5320 1.524621 GAGCCATGATGTCACGGGG 60.525 63.158 0.00 0.00 28.28 5.73
2158 5331 3.646715 CACGGGGGAAGGCAAGGA 61.647 66.667 0.00 0.00 0.00 3.36
2159 5332 2.856988 ACGGGGGAAGGCAAGGAA 60.857 61.111 0.00 0.00 0.00 3.36
2160 5333 2.238701 ACGGGGGAAGGCAAGGAAT 61.239 57.895 0.00 0.00 0.00 3.01
2161 5334 1.754234 CGGGGGAAGGCAAGGAATG 60.754 63.158 0.00 0.00 0.00 2.67
2171 5553 0.881118 GCAAGGAATGACTTCGCCAA 59.119 50.000 0.00 0.00 31.75 4.52
2193 5575 3.088941 TAGGAATGGTGCGGCGAGG 62.089 63.158 12.98 0.00 0.00 4.63
2202 5584 3.643978 GCGGCGAGGCATGATGTC 61.644 66.667 12.98 0.00 0.00 3.06
2224 5606 1.683011 CGGGTGAAGGCAAGGAATGAT 60.683 52.381 0.00 0.00 0.00 2.45
2230 5612 0.543277 AGGCAAGGAATGATCTCGCA 59.457 50.000 0.00 0.00 0.00 5.10
2232 5614 0.307146 GCAAGGAATGATCTCGCAGC 59.693 55.000 0.00 0.00 0.00 5.25
2233 5615 1.950828 CAAGGAATGATCTCGCAGCT 58.049 50.000 0.00 0.00 0.00 4.24
2249 5661 1.227674 GCTGGAGGTAGGAATGGCG 60.228 63.158 0.00 0.00 0.00 5.69
2280 5692 1.340308 TGATGTCATGGGTCAAGGCAG 60.340 52.381 0.00 0.00 0.00 4.85
2327 5740 1.953138 CGAGACGAGCCATGATGCC 60.953 63.158 0.00 0.00 0.00 4.40
2332 5745 1.332889 ACGAGCCATGATGCCAGAGA 61.333 55.000 0.00 0.00 0.00 3.10
2336 5749 2.302445 GAGCCATGATGCCAGAGATAGT 59.698 50.000 0.00 0.00 0.00 2.12
2337 5750 2.038689 AGCCATGATGCCAGAGATAGTG 59.961 50.000 0.00 0.00 0.00 2.74
2338 5751 2.224475 GCCATGATGCCAGAGATAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
2339 5752 3.007290 GCCATGATGCCAGAGATAGTGTA 59.993 47.826 0.00 0.00 0.00 2.90
2340 5753 4.503817 GCCATGATGCCAGAGATAGTGTAA 60.504 45.833 0.00 0.00 0.00 2.41
2341 5754 5.614308 CCATGATGCCAGAGATAGTGTAAA 58.386 41.667 0.00 0.00 0.00 2.01
2342 5755 6.057533 CCATGATGCCAGAGATAGTGTAAAA 58.942 40.000 0.00 0.00 0.00 1.52
2343 5756 6.543465 CCATGATGCCAGAGATAGTGTAAAAA 59.457 38.462 0.00 0.00 0.00 1.94
2368 5781 9.836864 AAATAAAGCCTCTTCAAATTTTTCTGT 57.163 25.926 0.00 0.00 0.00 3.41
2369 5782 9.481340 AATAAAGCCTCTTCAAATTTTTCTGTC 57.519 29.630 0.00 0.00 0.00 3.51
2370 5783 5.459536 AGCCTCTTCAAATTTTTCTGTCC 57.540 39.130 0.00 0.00 0.00 4.02
2371 5784 4.022849 AGCCTCTTCAAATTTTTCTGTCCG 60.023 41.667 0.00 0.00 0.00 4.79
2372 5785 4.229876 CCTCTTCAAATTTTTCTGTCCGC 58.770 43.478 0.00 0.00 0.00 5.54
2373 5786 4.022849 CCTCTTCAAATTTTTCTGTCCGCT 60.023 41.667 0.00 0.00 0.00 5.52
2374 5787 5.507985 CCTCTTCAAATTTTTCTGTCCGCTT 60.508 40.000 0.00 0.00 0.00 4.68
2375 5788 5.901552 TCTTCAAATTTTTCTGTCCGCTTT 58.098 33.333 0.00 0.00 0.00 3.51
2376 5789 5.748152 TCTTCAAATTTTTCTGTCCGCTTTG 59.252 36.000 0.00 0.00 0.00 2.77
2377 5790 5.255710 TCAAATTTTTCTGTCCGCTTTGA 57.744 34.783 0.00 0.00 0.00 2.69
2378 5791 5.841810 TCAAATTTTTCTGTCCGCTTTGAT 58.158 33.333 0.00 0.00 0.00 2.57
2379 5792 6.279882 TCAAATTTTTCTGTCCGCTTTGATT 58.720 32.000 0.00 0.00 0.00 2.57
2380 5793 6.200665 TCAAATTTTTCTGTCCGCTTTGATTG 59.799 34.615 0.00 0.00 0.00 2.67
2381 5794 4.909696 TTTTTCTGTCCGCTTTGATTGA 57.090 36.364 0.00 0.00 0.00 2.57
2382 5795 5.452078 TTTTTCTGTCCGCTTTGATTGAT 57.548 34.783 0.00 0.00 0.00 2.57
2383 5796 6.567687 TTTTTCTGTCCGCTTTGATTGATA 57.432 33.333 0.00 0.00 0.00 2.15
2384 5797 5.801350 TTTCTGTCCGCTTTGATTGATAG 57.199 39.130 0.00 0.00 0.00 2.08
2385 5798 4.736126 TCTGTCCGCTTTGATTGATAGA 57.264 40.909 0.00 0.00 0.00 1.98
2386 5799 5.084818 TCTGTCCGCTTTGATTGATAGAA 57.915 39.130 0.00 0.00 0.00 2.10
2387 5800 5.487433 TCTGTCCGCTTTGATTGATAGAAA 58.513 37.500 0.00 0.00 0.00 2.52
2388 5801 6.115446 TCTGTCCGCTTTGATTGATAGAAAT 58.885 36.000 0.00 0.00 0.00 2.17
2389 5802 6.599244 TCTGTCCGCTTTGATTGATAGAAATT 59.401 34.615 0.00 0.00 0.00 1.82
2390 5803 7.121168 TCTGTCCGCTTTGATTGATAGAAATTT 59.879 33.333 0.00 0.00 0.00 1.82
2391 5804 7.601856 TGTCCGCTTTGATTGATAGAAATTTT 58.398 30.769 0.00 0.00 0.00 1.82
2392 5805 7.541783 TGTCCGCTTTGATTGATAGAAATTTTG 59.458 33.333 0.00 0.00 0.00 2.44
2393 5806 7.754924 GTCCGCTTTGATTGATAGAAATTTTGA 59.245 33.333 0.00 0.00 0.00 2.69
2394 5807 8.469200 TCCGCTTTGATTGATAGAAATTTTGAT 58.531 29.630 0.00 0.00 0.00 2.57
2395 5808 8.749499 CCGCTTTGATTGATAGAAATTTTGATC 58.251 33.333 0.00 0.00 0.00 2.92
2396 5809 8.749499 CGCTTTGATTGATAGAAATTTTGATCC 58.251 33.333 9.54 0.00 0.00 3.36
2397 5810 9.590451 GCTTTGATTGATAGAAATTTTGATCCA 57.410 29.630 9.54 1.88 0.00 3.41
2414 5827 8.899427 TTTGATCCAAAATAGTTTGCAATTGA 57.101 26.923 10.34 2.49 42.44 2.57
2415 5828 9.504708 TTTGATCCAAAATAGTTTGCAATTGAT 57.495 25.926 10.34 7.02 42.44 2.57
2416 5829 8.706492 TGATCCAAAATAGTTTGCAATTGATC 57.294 30.769 10.34 17.50 42.44 2.92
2417 5830 8.533657 TGATCCAAAATAGTTTGCAATTGATCT 58.466 29.630 21.44 3.75 42.44 2.75
2418 5831 9.374838 GATCCAAAATAGTTTGCAATTGATCTT 57.625 29.630 10.34 0.00 42.44 2.40
2428 5841 9.374838 AGTTTGCAATTGATCTTATGGAAATTC 57.625 29.630 10.34 0.00 35.93 2.17
2429 5842 8.606602 GTTTGCAATTGATCTTATGGAAATTCC 58.393 33.333 10.34 4.79 35.93 3.01
2430 5843 7.664552 TGCAATTGATCTTATGGAAATTCCT 57.335 32.000 13.78 1.65 37.46 3.36
2431 5844 7.494211 TGCAATTGATCTTATGGAAATTCCTG 58.506 34.615 13.78 0.00 37.46 3.86
2432 5845 6.927381 GCAATTGATCTTATGGAAATTCCTGG 59.073 38.462 13.78 1.30 37.46 4.45
2433 5846 7.201938 GCAATTGATCTTATGGAAATTCCTGGA 60.202 37.037 13.78 6.45 37.46 3.86
2434 5847 8.867097 CAATTGATCTTATGGAAATTCCTGGAT 58.133 33.333 13.78 10.52 37.46 3.41
2435 5848 7.828508 TTGATCTTATGGAAATTCCTGGATG 57.171 36.000 13.78 1.58 37.46 3.51
2436 5849 6.309357 TGATCTTATGGAAATTCCTGGATGG 58.691 40.000 13.78 0.00 37.46 3.51
2437 5850 5.992564 TCTTATGGAAATTCCTGGATGGA 57.007 39.130 13.78 1.92 44.51 3.41
2438 5851 5.694995 TCTTATGGAAATTCCTGGATGGAC 58.305 41.667 13.78 0.00 46.14 4.02
2439 5852 5.433051 TCTTATGGAAATTCCTGGATGGACT 59.567 40.000 13.78 0.00 46.14 3.85
2440 5853 3.652057 TGGAAATTCCTGGATGGACTC 57.348 47.619 13.78 0.00 46.14 3.36
2441 5854 2.092968 TGGAAATTCCTGGATGGACTCG 60.093 50.000 13.78 0.00 46.14 4.18
2442 5855 2.170607 GGAAATTCCTGGATGGACTCGA 59.829 50.000 4.46 0.00 46.14 4.04
2443 5856 3.370527 GGAAATTCCTGGATGGACTCGAA 60.371 47.826 4.46 0.00 46.14 3.71
2444 5857 4.455606 GAAATTCCTGGATGGACTCGAAT 58.544 43.478 0.00 0.00 46.14 3.34
2445 5858 5.454755 GGAAATTCCTGGATGGACTCGAATA 60.455 44.000 4.46 0.00 46.14 1.75
2446 5859 5.832539 AATTCCTGGATGGACTCGAATAT 57.167 39.130 0.00 0.00 46.14 1.28
2447 5860 5.832539 ATTCCTGGATGGACTCGAATATT 57.167 39.130 0.00 0.00 46.14 1.28
2448 5861 4.873746 TCCTGGATGGACTCGAATATTC 57.126 45.455 5.30 5.30 40.56 1.75
2449 5862 3.255888 TCCTGGATGGACTCGAATATTCG 59.744 47.826 27.99 27.99 45.16 3.34
2466 5879 4.889832 ATTCGAGTGATTGAGGATTTGC 57.110 40.909 0.00 0.00 0.00 3.68
2467 5880 2.270923 TCGAGTGATTGAGGATTTGCG 58.729 47.619 0.00 0.00 0.00 4.85
2468 5881 2.002586 CGAGTGATTGAGGATTTGCGT 58.997 47.619 0.00 0.00 0.00 5.24
2469 5882 2.029728 CGAGTGATTGAGGATTTGCGTC 59.970 50.000 0.00 0.00 0.00 5.19
2470 5883 2.352960 GAGTGATTGAGGATTTGCGTCC 59.647 50.000 0.00 0.00 38.62 4.79
2471 5884 1.401905 GTGATTGAGGATTTGCGTCCC 59.598 52.381 0.00 0.00 39.17 4.46
2472 5885 1.004161 TGATTGAGGATTTGCGTCCCA 59.996 47.619 0.00 0.00 39.17 4.37
2473 5886 1.401905 GATTGAGGATTTGCGTCCCAC 59.598 52.381 0.00 0.00 39.17 4.61
2474 5887 0.109532 TTGAGGATTTGCGTCCCACA 59.890 50.000 0.00 0.00 39.17 4.17
2475 5888 0.321564 TGAGGATTTGCGTCCCACAG 60.322 55.000 0.00 0.00 39.17 3.66
2476 5889 0.036388 GAGGATTTGCGTCCCACAGA 60.036 55.000 0.00 0.00 39.17 3.41
2477 5890 0.400213 AGGATTTGCGTCCCACAGAA 59.600 50.000 0.00 0.00 39.17 3.02
2478 5891 0.521735 GGATTTGCGTCCCACAGAAC 59.478 55.000 0.00 0.00 31.82 3.01
2479 5892 1.523758 GATTTGCGTCCCACAGAACT 58.476 50.000 0.00 0.00 0.00 3.01
2480 5893 2.614481 GGATTTGCGTCCCACAGAACTA 60.614 50.000 0.00 0.00 31.82 2.24
2481 5894 1.873698 TTTGCGTCCCACAGAACTAC 58.126 50.000 0.00 0.00 0.00 2.73
2482 5895 0.034337 TTGCGTCCCACAGAACTACC 59.966 55.000 0.00 0.00 0.00 3.18
2483 5896 1.116536 TGCGTCCCACAGAACTACCA 61.117 55.000 0.00 0.00 0.00 3.25
2484 5897 0.249398 GCGTCCCACAGAACTACCAT 59.751 55.000 0.00 0.00 0.00 3.55
2485 5898 1.338769 GCGTCCCACAGAACTACCATT 60.339 52.381 0.00 0.00 0.00 3.16
2486 5899 2.874457 GCGTCCCACAGAACTACCATTT 60.874 50.000 0.00 0.00 0.00 2.32
2487 5900 3.408634 CGTCCCACAGAACTACCATTTT 58.591 45.455 0.00 0.00 0.00 1.82
2488 5901 4.571919 CGTCCCACAGAACTACCATTTTA 58.428 43.478 0.00 0.00 0.00 1.52
2489 5902 4.998672 CGTCCCACAGAACTACCATTTTAA 59.001 41.667 0.00 0.00 0.00 1.52
2490 5903 5.470777 CGTCCCACAGAACTACCATTTTAAA 59.529 40.000 0.00 0.00 0.00 1.52
2491 5904 6.016943 CGTCCCACAGAACTACCATTTTAAAA 60.017 38.462 2.51 2.51 0.00 1.52
2492 5905 7.468906 CGTCCCACAGAACTACCATTTTAAAAA 60.469 37.037 4.44 0.00 0.00 1.94
2511 5924 5.900865 AAAAAGTGACCGAAAACTACCAA 57.099 34.783 0.00 0.00 0.00 3.67
2512 5925 5.494632 AAAAGTGACCGAAAACTACCAAG 57.505 39.130 0.00 0.00 0.00 3.61
2513 5926 4.411256 AAGTGACCGAAAACTACCAAGA 57.589 40.909 0.00 0.00 0.00 3.02
2514 5927 4.618920 AGTGACCGAAAACTACCAAGAT 57.381 40.909 0.00 0.00 0.00 2.40
2515 5928 4.969484 AGTGACCGAAAACTACCAAGATT 58.031 39.130 0.00 0.00 0.00 2.40
2516 5929 5.374071 AGTGACCGAAAACTACCAAGATTT 58.626 37.500 0.00 0.00 31.03 2.17
2517 5930 5.826208 AGTGACCGAAAACTACCAAGATTTT 59.174 36.000 0.00 0.00 28.74 1.82
2518 5931 6.993902 AGTGACCGAAAACTACCAAGATTTTA 59.006 34.615 0.00 0.00 28.74 1.52
2519 5932 7.664318 AGTGACCGAAAACTACCAAGATTTTAT 59.336 33.333 0.00 0.00 28.74 1.40
2520 5933 8.938906 GTGACCGAAAACTACCAAGATTTTATA 58.061 33.333 0.00 0.00 28.74 0.98
2521 5934 9.504708 TGACCGAAAACTACCAAGATTTTATAA 57.495 29.630 0.00 0.00 28.74 0.98
2558 5971 7.981102 AAACTACCACTTTCAGATAAAGACC 57.019 36.000 4.59 0.00 0.00 3.85
2559 5972 6.681729 ACTACCACTTTCAGATAAAGACCA 57.318 37.500 4.59 0.00 0.00 4.02
2560 5973 6.702329 ACTACCACTTTCAGATAAAGACCAG 58.298 40.000 4.59 0.10 0.00 4.00
2561 5974 5.568620 ACCACTTTCAGATAAAGACCAGT 57.431 39.130 4.59 0.00 0.00 4.00
2562 5975 5.941788 ACCACTTTCAGATAAAGACCAGTT 58.058 37.500 4.59 0.00 0.00 3.16
2563 5976 6.365520 ACCACTTTCAGATAAAGACCAGTTT 58.634 36.000 4.59 0.00 0.00 2.66
2564 5977 7.514721 ACCACTTTCAGATAAAGACCAGTTTA 58.485 34.615 4.59 0.00 0.00 2.01
2565 5978 7.661847 ACCACTTTCAGATAAAGACCAGTTTAG 59.338 37.037 4.59 0.00 0.00 1.85
2566 5979 7.878127 CCACTTTCAGATAAAGACCAGTTTAGA 59.122 37.037 4.59 0.00 0.00 2.10
2567 5980 8.713271 CACTTTCAGATAAAGACCAGTTTAGAC 58.287 37.037 4.59 0.00 0.00 2.59
2568 5981 7.599245 ACTTTCAGATAAAGACCAGTTTAGACG 59.401 37.037 4.59 0.00 0.00 4.18
2569 5982 6.829229 TCAGATAAAGACCAGTTTAGACGA 57.171 37.500 0.00 0.00 0.00 4.20
2570 5983 7.406031 TCAGATAAAGACCAGTTTAGACGAT 57.594 36.000 0.00 0.00 0.00 3.73
2571 5984 7.837863 TCAGATAAAGACCAGTTTAGACGATT 58.162 34.615 0.00 0.00 0.00 3.34
2572 5985 8.311836 TCAGATAAAGACCAGTTTAGACGATTT 58.688 33.333 0.00 0.00 0.00 2.17
2573 5986 9.582431 CAGATAAAGACCAGTTTAGACGATTTA 57.418 33.333 0.00 0.00 0.00 1.40
2576 5989 6.723131 AAGACCAGTTTAGACGATTTAAGC 57.277 37.500 0.00 0.00 0.00 3.09
2577 5990 4.863131 AGACCAGTTTAGACGATTTAAGCG 59.137 41.667 0.00 0.00 0.00 4.68
2578 5991 4.563061 ACCAGTTTAGACGATTTAAGCGT 58.437 39.130 8.28 8.28 45.79 5.07
2579 5992 4.387862 ACCAGTTTAGACGATTTAAGCGTG 59.612 41.667 14.22 0.00 42.77 5.34
2580 5993 4.387862 CCAGTTTAGACGATTTAAGCGTGT 59.612 41.667 14.22 12.21 42.77 4.49
2581 5994 5.107220 CCAGTTTAGACGATTTAAGCGTGTT 60.107 40.000 14.22 3.78 42.77 3.32
2582 5995 5.783654 CAGTTTAGACGATTTAAGCGTGTTG 59.216 40.000 14.22 0.19 42.77 3.33
2583 5996 5.464389 AGTTTAGACGATTTAAGCGTGTTGT 59.536 36.000 14.22 0.00 42.77 3.32
2584 5997 5.505165 TTAGACGATTTAAGCGTGTTGTC 57.495 39.130 14.22 0.00 42.77 3.18
2585 5998 3.386486 AGACGATTTAAGCGTGTTGTCA 58.614 40.909 14.22 0.00 42.77 3.58
2586 5999 3.805422 AGACGATTTAAGCGTGTTGTCAA 59.195 39.130 14.22 0.00 42.77 3.18
2587 6000 4.271533 AGACGATTTAAGCGTGTTGTCAAA 59.728 37.500 14.22 0.00 42.77 2.69
2588 6001 4.523813 ACGATTTAAGCGTGTTGTCAAAG 58.476 39.130 7.64 0.00 40.94 2.77
2589 6002 4.034742 ACGATTTAAGCGTGTTGTCAAAGT 59.965 37.500 7.64 0.00 40.94 2.66
2590 6003 4.607235 CGATTTAAGCGTGTTGTCAAAGTC 59.393 41.667 0.00 0.00 0.00 3.01
2591 6004 4.948608 TTTAAGCGTGTTGTCAAAGTCA 57.051 36.364 0.00 0.00 0.00 3.41
2592 6005 4.948608 TTAAGCGTGTTGTCAAAGTCAA 57.051 36.364 0.00 0.00 0.00 3.18
2593 6006 2.825086 AGCGTGTTGTCAAAGTCAAC 57.175 45.000 0.00 0.00 43.48 3.18
2594 6007 1.062002 AGCGTGTTGTCAAAGTCAACG 59.938 47.619 0.00 0.00 45.33 4.10
2595 6008 1.452717 CGTGTTGTCAAAGTCAACGC 58.547 50.000 10.87 10.87 45.33 4.84
2596 6009 2.825086 GTGTTGTCAAAGTCAACGCT 57.175 45.000 12.86 0.00 46.26 5.07
2597 6010 3.936902 GTGTTGTCAAAGTCAACGCTA 57.063 42.857 12.86 0.00 46.26 4.26
2598 6011 4.267357 GTGTTGTCAAAGTCAACGCTAA 57.733 40.909 12.86 0.00 46.26 3.09
2599 6012 4.026407 GTGTTGTCAAAGTCAACGCTAAC 58.974 43.478 12.86 0.00 46.26 2.34
2600 6013 3.242155 TGTTGTCAAAGTCAACGCTAACG 60.242 43.478 0.00 0.00 45.33 3.18
2611 6024 2.665777 CGCTAACGTGGGTCATCTG 58.334 57.895 0.00 0.00 33.53 2.90
2612 6025 0.108804 CGCTAACGTGGGTCATCTGT 60.109 55.000 0.00 0.00 33.53 3.41
2613 6026 1.641577 GCTAACGTGGGTCATCTGTC 58.358 55.000 0.00 0.00 0.00 3.51
2614 6027 1.067142 GCTAACGTGGGTCATCTGTCA 60.067 52.381 0.00 0.00 0.00 3.58
2615 6028 2.611971 GCTAACGTGGGTCATCTGTCAA 60.612 50.000 0.00 0.00 0.00 3.18
2616 6029 1.878953 AACGTGGGTCATCTGTCAAC 58.121 50.000 0.00 0.00 0.00 3.18
2617 6030 0.756294 ACGTGGGTCATCTGTCAACA 59.244 50.000 0.00 0.00 0.00 3.33
2618 6031 1.148310 CGTGGGTCATCTGTCAACAC 58.852 55.000 0.00 0.00 0.00 3.32
2619 6032 1.270305 CGTGGGTCATCTGTCAACACT 60.270 52.381 0.00 0.00 0.00 3.55
2620 6033 2.029380 CGTGGGTCATCTGTCAACACTA 60.029 50.000 0.00 0.00 0.00 2.74
2621 6034 3.589988 GTGGGTCATCTGTCAACACTAG 58.410 50.000 0.00 0.00 0.00 2.57
2622 6035 2.028112 TGGGTCATCTGTCAACACTAGC 60.028 50.000 0.00 0.00 0.00 3.42
2623 6036 2.263077 GGTCATCTGTCAACACTAGCG 58.737 52.381 0.00 0.00 0.00 4.26
2624 6037 2.263077 GTCATCTGTCAACACTAGCGG 58.737 52.381 0.00 0.00 0.00 5.52
2625 6038 1.002366 CATCTGTCAACACTAGCGGC 58.998 55.000 0.00 0.00 0.00 6.53
2626 6039 0.898320 ATCTGTCAACACTAGCGGCT 59.102 50.000 7.98 7.98 0.00 5.52
2627 6040 0.243907 TCTGTCAACACTAGCGGCTC 59.756 55.000 5.39 0.00 0.00 4.70
2628 6041 0.038251 CTGTCAACACTAGCGGCTCA 60.038 55.000 5.39 0.00 0.00 4.26
2629 6042 0.038251 TGTCAACACTAGCGGCTCAG 60.038 55.000 5.39 5.36 0.00 3.35
2630 6043 0.038159 GTCAACACTAGCGGCTCAGT 60.038 55.000 5.39 6.03 0.00 3.41
2631 6044 0.243907 TCAACACTAGCGGCTCAGTC 59.756 55.000 5.39 0.00 0.00 3.51
2632 6045 1.073216 CAACACTAGCGGCTCAGTCG 61.073 60.000 5.39 0.00 0.00 4.18
2633 6046 1.524863 AACACTAGCGGCTCAGTCGT 61.525 55.000 5.39 7.17 31.29 4.34
2634 6047 1.515088 CACTAGCGGCTCAGTCGTG 60.515 63.158 5.39 3.96 31.29 4.35
2635 6048 2.580867 CTAGCGGCTCAGTCGTGC 60.581 66.667 5.39 0.00 31.29 5.34
2636 6049 3.057547 CTAGCGGCTCAGTCGTGCT 62.058 63.158 5.39 0.00 39.59 4.40
2637 6050 2.928313 CTAGCGGCTCAGTCGTGCTC 62.928 65.000 5.39 0.00 37.12 4.26
2639 6052 4.406173 CGGCTCAGTCGTGCTCGT 62.406 66.667 8.17 0.00 38.33 4.18
2640 6053 2.049063 GGCTCAGTCGTGCTCGTT 60.049 61.111 8.17 0.00 38.33 3.85
2641 6054 2.375766 GGCTCAGTCGTGCTCGTTG 61.376 63.158 8.17 8.32 38.33 4.10
2642 6055 3.004734 GCTCAGTCGTGCTCGTTGC 62.005 63.158 8.17 3.51 43.25 4.17
2643 6056 2.355837 TCAGTCGTGCTCGTTGCC 60.356 61.111 8.17 0.00 42.00 4.52
2644 6057 2.356313 CAGTCGTGCTCGTTGCCT 60.356 61.111 8.17 0.00 42.00 4.75
2645 6058 2.049063 AGTCGTGCTCGTTGCCTC 60.049 61.111 8.17 0.00 42.00 4.70
2646 6059 3.112709 GTCGTGCTCGTTGCCTCC 61.113 66.667 8.17 0.00 42.00 4.30
2647 6060 4.717629 TCGTGCTCGTTGCCTCCG 62.718 66.667 8.17 2.09 42.00 4.63
2649 6062 3.414700 GTGCTCGTTGCCTCCGTG 61.415 66.667 1.30 0.00 42.00 4.94
2652 6065 3.114616 CTCGTTGCCTCCGTGCTG 61.115 66.667 0.00 0.00 0.00 4.41
2653 6066 3.573772 CTCGTTGCCTCCGTGCTGA 62.574 63.158 0.00 0.00 0.00 4.26
2654 6067 2.664851 CGTTGCCTCCGTGCTGAA 60.665 61.111 0.00 0.00 0.00 3.02
2655 6068 2.946762 GTTGCCTCCGTGCTGAAC 59.053 61.111 0.00 0.00 0.00 3.18
2663 6076 3.276091 CGTGCTGAACGCCACCAA 61.276 61.111 0.00 0.00 46.99 3.67
2664 6077 2.331451 GTGCTGAACGCCACCAAC 59.669 61.111 0.00 0.00 38.05 3.77
2665 6078 3.276091 TGCTGAACGCCACCAACG 61.276 61.111 0.00 0.00 38.05 4.10
2666 6079 4.025401 GCTGAACGCCACCAACGG 62.025 66.667 0.00 0.00 34.00 4.44
2681 6094 2.355363 CGGCCTCGTTGACGTTGA 60.355 61.111 0.00 0.00 40.80 3.18
2682 6095 2.372690 CGGCCTCGTTGACGTTGAG 61.373 63.158 0.00 0.00 40.80 3.02
2685 6098 2.810486 CCTCGTTGACGTTGAGGTC 58.190 57.895 15.09 0.00 43.48 3.85
2686 6099 1.002250 CCTCGTTGACGTTGAGGTCG 61.002 60.000 15.09 5.08 43.48 4.79
2687 6100 1.002250 CTCGTTGACGTTGAGGTCGG 61.002 60.000 3.25 0.00 39.83 4.79
2688 6101 2.654912 CGTTGACGTTGAGGTCGGC 61.655 63.158 0.00 0.00 39.83 5.54
2689 6102 1.300697 GTTGACGTTGAGGTCGGCT 60.301 57.895 0.00 0.00 39.83 5.52
2690 6103 1.006571 TTGACGTTGAGGTCGGCTC 60.007 57.895 0.00 0.00 39.83 4.70
2691 6104 2.504244 GACGTTGAGGTCGGCTCG 60.504 66.667 0.00 0.00 33.14 5.03
2692 6105 3.264866 GACGTTGAGGTCGGCTCGT 62.265 63.158 0.00 0.00 33.14 4.18
2693 6106 2.049433 CGTTGAGGTCGGCTCGTT 60.049 61.111 0.00 0.00 0.00 3.85
2694 6107 2.372690 CGTTGAGGTCGGCTCGTTG 61.373 63.158 0.00 0.00 0.00 4.10
2695 6108 1.006571 GTTGAGGTCGGCTCGTTGA 60.007 57.895 0.00 0.00 0.00 3.18
2696 6109 1.009389 GTTGAGGTCGGCTCGTTGAG 61.009 60.000 0.00 0.00 0.00 3.02
2706 6119 3.258225 CTCGTTGAGCTCGTATGGG 57.742 57.895 9.64 1.13 0.00 4.00
2707 6120 0.872021 CTCGTTGAGCTCGTATGGGC 60.872 60.000 9.64 0.00 0.00 5.36
2708 6121 1.883084 CGTTGAGCTCGTATGGGCC 60.883 63.158 9.64 0.00 0.00 5.80
2709 6122 1.883084 GTTGAGCTCGTATGGGCCG 60.883 63.158 9.64 0.00 0.00 6.13
2710 6123 3.733344 TTGAGCTCGTATGGGCCGC 62.733 63.158 9.64 0.00 0.00 6.53
2741 6154 3.103911 CGTCGGCCTGAACGTCAC 61.104 66.667 12.45 0.00 0.00 3.67
2742 6155 2.737376 GTCGGCCTGAACGTCACC 60.737 66.667 0.00 0.00 0.00 4.02
2743 6156 3.228017 TCGGCCTGAACGTCACCA 61.228 61.111 0.00 0.00 0.00 4.17
2744 6157 2.047274 CGGCCTGAACGTCACCAT 60.047 61.111 0.00 0.00 0.00 3.55
2745 6158 2.100631 CGGCCTGAACGTCACCATC 61.101 63.158 0.00 0.00 0.00 3.51
2746 6159 1.003839 GGCCTGAACGTCACCATCA 60.004 57.895 0.00 0.00 0.00 3.07
2747 6160 1.298859 GGCCTGAACGTCACCATCAC 61.299 60.000 0.00 0.00 0.00 3.06
2748 6161 1.626654 GCCTGAACGTCACCATCACG 61.627 60.000 0.00 0.00 43.13 4.35
2749 6162 1.626654 CCTGAACGTCACCATCACGC 61.627 60.000 0.00 0.00 41.10 5.34
2750 6163 1.626654 CTGAACGTCACCATCACGCC 61.627 60.000 0.00 0.00 41.10 5.68
2751 6164 2.358247 AACGTCACCATCACGCCC 60.358 61.111 0.00 0.00 41.10 6.13
2752 6165 3.171828 AACGTCACCATCACGCCCA 62.172 57.895 0.00 0.00 41.10 5.36
2753 6166 2.358125 CGTCACCATCACGCCCAA 60.358 61.111 0.00 0.00 0.00 4.12
2754 6167 2.677003 CGTCACCATCACGCCCAAC 61.677 63.158 0.00 0.00 0.00 3.77
2755 6168 2.033448 TCACCATCACGCCCAACC 59.967 61.111 0.00 0.00 0.00 3.77
2756 6169 3.430862 CACCATCACGCCCAACCG 61.431 66.667 0.00 0.00 0.00 4.44
2757 6170 4.715523 ACCATCACGCCCAACCGG 62.716 66.667 0.00 0.00 0.00 5.28
2758 6171 4.715523 CCATCACGCCCAACCGGT 62.716 66.667 0.00 0.00 0.00 5.28
2759 6172 3.124921 CATCACGCCCAACCGGTC 61.125 66.667 8.04 0.00 0.00 4.79
2760 6173 4.752879 ATCACGCCCAACCGGTCG 62.753 66.667 8.04 10.16 37.24 4.79
2783 6196 4.111016 CGGCGCCGACACTAGTCA 62.111 66.667 44.86 0.00 45.23 3.41
2784 6197 2.506438 GGCGCCGACACTAGTCAC 60.506 66.667 12.58 0.00 45.23 3.67
2785 6198 2.506438 GCGCCGACACTAGTCACC 60.506 66.667 0.00 0.00 45.23 4.02
2786 6199 2.991076 GCGCCGACACTAGTCACCT 61.991 63.158 0.00 0.00 45.23 4.00
2787 6200 1.136984 CGCCGACACTAGTCACCTC 59.863 63.158 0.00 0.00 45.23 3.85
2788 6201 1.583495 CGCCGACACTAGTCACCTCA 61.583 60.000 0.00 0.00 45.23 3.86
2789 6202 0.109226 GCCGACACTAGTCACCTCAC 60.109 60.000 0.00 0.00 45.23 3.51
2790 6203 0.526662 CCGACACTAGTCACCTCACC 59.473 60.000 0.00 0.00 45.23 4.02
2791 6204 0.168348 CGACACTAGTCACCTCACCG 59.832 60.000 0.00 0.00 45.23 4.94
2792 6205 1.245732 GACACTAGTCACCTCACCGT 58.754 55.000 0.00 0.00 44.34 4.83
2793 6206 0.959553 ACACTAGTCACCTCACCGTG 59.040 55.000 0.00 0.00 34.93 4.94
2794 6207 0.388649 CACTAGTCACCTCACCGTGC 60.389 60.000 0.00 0.00 33.57 5.34
2795 6208 1.154016 CTAGTCACCTCACCGTGCG 60.154 63.158 0.00 0.00 33.57 5.34
2796 6209 2.543687 CTAGTCACCTCACCGTGCGG 62.544 65.000 9.29 9.29 42.03 5.69
2797 6210 3.986006 GTCACCTCACCGTGCGGA 61.986 66.667 18.16 0.00 38.96 5.54
2798 6211 2.994995 TCACCTCACCGTGCGGAT 60.995 61.111 18.16 0.00 38.96 4.18
2799 6212 2.509336 CACCTCACCGTGCGGATC 60.509 66.667 18.16 0.00 38.96 3.36
2800 6213 4.129737 ACCTCACCGTGCGGATCG 62.130 66.667 18.16 5.48 38.96 3.69
2801 6214 3.822192 CCTCACCGTGCGGATCGA 61.822 66.667 18.16 9.35 38.96 3.59
2802 6215 2.278206 CTCACCGTGCGGATCGAG 60.278 66.667 18.16 14.50 38.96 4.04
2803 6216 3.052620 CTCACCGTGCGGATCGAGT 62.053 63.158 18.16 0.00 38.96 4.18
2804 6217 1.712018 CTCACCGTGCGGATCGAGTA 61.712 60.000 18.16 0.00 38.96 2.59
2805 6218 1.585521 CACCGTGCGGATCGAGTAC 60.586 63.158 18.16 0.00 38.96 2.73
2806 6219 2.352001 CCGTGCGGATCGAGTACG 60.352 66.667 18.35 18.35 37.50 3.67
2815 6228 2.815211 TCGAGTACGACGACCCCG 60.815 66.667 0.00 0.00 43.81 5.73
2816 6229 4.527157 CGAGTACGACGACCCCGC 62.527 72.222 0.00 0.00 42.66 6.13
2817 6230 4.527157 GAGTACGACGACCCCGCG 62.527 72.222 0.00 0.00 39.95 6.46
2838 6251 4.253257 CGCCTCTCGGTCTACGCC 62.253 72.222 0.00 0.00 43.86 5.68
2839 6252 3.902086 GCCTCTCGGTCTACGCCC 61.902 72.222 0.00 0.00 43.86 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.133742 ATCTTGTTGTGCGCCAGTGC 62.134 55.000 4.18 0.00 0.00 4.40
46 47 7.274904 CGATGGTCAAGACGTCTTTCTAATTTA 59.725 37.037 27.79 9.64 33.11 1.40
66 67 0.677288 TTTCTCCACACGTCGATGGT 59.323 50.000 9.90 1.23 37.27 3.55
67 68 2.010145 ATTTCTCCACACGTCGATGG 57.990 50.000 9.90 12.37 37.32 3.51
68 69 2.530297 CGTATTTCTCCACACGTCGATG 59.470 50.000 2.26 2.26 0.00 3.84
69 70 2.421073 TCGTATTTCTCCACACGTCGAT 59.579 45.455 0.00 0.00 35.91 3.59
70 71 1.805943 TCGTATTTCTCCACACGTCGA 59.194 47.619 0.00 0.00 35.91 4.20
71 72 2.159612 TCTCGTATTTCTCCACACGTCG 60.160 50.000 0.00 0.00 35.91 5.12
72 73 3.482722 TCTCGTATTTCTCCACACGTC 57.517 47.619 0.00 0.00 35.91 4.34
73 74 3.928727 TTCTCGTATTTCTCCACACGT 57.071 42.857 0.00 0.00 35.91 4.49
74 75 4.482386 TCTTTCTCGTATTTCTCCACACG 58.518 43.478 0.00 0.00 35.78 4.49
75 76 4.327627 GCTCTTTCTCGTATTTCTCCACAC 59.672 45.833 0.00 0.00 0.00 3.82
76 77 4.220821 AGCTCTTTCTCGTATTTCTCCACA 59.779 41.667 0.00 0.00 0.00 4.17
77 78 4.749976 AGCTCTTTCTCGTATTTCTCCAC 58.250 43.478 0.00 0.00 0.00 4.02
78 79 4.462834 TGAGCTCTTTCTCGTATTTCTCCA 59.537 41.667 16.19 0.00 35.90 3.86
79 80 5.000012 TGAGCTCTTTCTCGTATTTCTCC 58.000 43.478 16.19 0.00 35.90 3.71
80 81 6.861055 CCTATGAGCTCTTTCTCGTATTTCTC 59.139 42.308 16.19 0.00 34.94 2.87
81 82 6.322712 ACCTATGAGCTCTTTCTCGTATTTCT 59.677 38.462 16.19 0.00 34.94 2.52
82 83 6.508777 ACCTATGAGCTCTTTCTCGTATTTC 58.491 40.000 16.19 0.00 34.94 2.17
83 84 6.472686 ACCTATGAGCTCTTTCTCGTATTT 57.527 37.500 16.19 0.00 34.94 1.40
84 85 6.472686 AACCTATGAGCTCTTTCTCGTATT 57.527 37.500 16.19 0.00 34.94 1.89
85 86 6.127310 ACAAACCTATGAGCTCTTTCTCGTAT 60.127 38.462 16.19 0.00 34.94 3.06
86 87 5.185249 ACAAACCTATGAGCTCTTTCTCGTA 59.815 40.000 16.19 0.00 35.90 3.43
87 88 4.021016 ACAAACCTATGAGCTCTTTCTCGT 60.021 41.667 16.19 0.73 35.90 4.18
88 89 4.499183 ACAAACCTATGAGCTCTTTCTCG 58.501 43.478 16.19 0.09 35.90 4.04
174 218 3.119245 TCGTGCTCACTACCAACTATTCC 60.119 47.826 0.00 0.00 0.00 3.01
176 220 3.510360 ACTCGTGCTCACTACCAACTATT 59.490 43.478 0.00 0.00 0.00 1.73
192 236 2.124507 AACCCACCCCATCACTCGTG 62.125 60.000 0.00 0.00 0.00 4.35
198 242 3.330126 TTTTTACAACCCACCCCATCA 57.670 42.857 0.00 0.00 0.00 3.07
253 299 2.289694 GGAGCTAGCCTTTGTCTTCACA 60.290 50.000 12.13 0.00 0.00 3.58
363 410 4.948608 TCTATTTCTATCTAGAGCGCCG 57.051 45.455 2.29 0.00 33.21 6.46
392 442 1.037579 GCCTACCCACCCAAATCAGC 61.038 60.000 0.00 0.00 0.00 4.26
406 456 2.106332 CATCGACGTGGGGCCTAC 59.894 66.667 10.45 10.45 0.00 3.18
433 483 0.790207 CAAGACGCGTTACACTGCAT 59.210 50.000 15.53 0.00 0.00 3.96
504 593 1.270826 GCTAGCCTCTGTATCGATGCA 59.729 52.381 15.64 15.64 0.00 3.96
505 594 1.543802 AGCTAGCCTCTGTATCGATGC 59.456 52.381 12.13 7.48 0.00 3.91
548 643 5.698545 GTGGGCTGTAATAATTTGTTGCAAA 59.301 36.000 0.00 0.00 0.00 3.68
551 3076 4.815269 TGTGGGCTGTAATAATTTGTTGC 58.185 39.130 0.00 0.00 0.00 4.17
555 3080 3.446873 TGGCTGTGGGCTGTAATAATTTG 59.553 43.478 0.00 0.00 41.46 2.32
614 3592 2.529680 CGCGAGCGAGTAAAGTAAAACG 60.530 50.000 12.58 0.00 42.83 3.60
628 3606 0.804544 TCTACCATTTTCCGCGAGCG 60.805 55.000 8.23 10.86 39.44 5.03
641 3619 0.323629 CAACCTTTCCGCCTCTACCA 59.676 55.000 0.00 0.00 0.00 3.25
727 3707 2.440065 GGGCCCGCATGTCATTGA 60.440 61.111 5.69 0.00 0.00 2.57
836 3826 1.963855 TTGCCGGATGTGTTGACCG 60.964 57.895 5.05 0.00 45.24 4.79
885 3892 3.388676 AGGATGCTGAGGATGAGAAGAAG 59.611 47.826 0.00 0.00 0.00 2.85
890 3897 2.437281 GGAAAGGATGCTGAGGATGAGA 59.563 50.000 0.00 0.00 0.00 3.27
891 3898 2.438763 AGGAAAGGATGCTGAGGATGAG 59.561 50.000 0.00 0.00 0.00 2.90
901 3908 2.100605 ACGTTGAGAGGAAAGGATGC 57.899 50.000 0.00 0.00 0.00 3.91
921 3930 2.170012 AGGCGTAGGAGATTTGGGTA 57.830 50.000 0.00 0.00 0.00 3.69
922 3931 1.209747 GAAGGCGTAGGAGATTTGGGT 59.790 52.381 0.00 0.00 0.00 4.51
923 3932 1.475213 GGAAGGCGTAGGAGATTTGGG 60.475 57.143 0.00 0.00 0.00 4.12
924 3933 1.209504 TGGAAGGCGTAGGAGATTTGG 59.790 52.381 0.00 0.00 0.00 3.28
925 3934 2.168521 TCTGGAAGGCGTAGGAGATTTG 59.831 50.000 0.00 0.00 0.00 2.32
926 3935 2.432510 CTCTGGAAGGCGTAGGAGATTT 59.567 50.000 0.00 0.00 0.00 2.17
927 3936 2.035632 CTCTGGAAGGCGTAGGAGATT 58.964 52.381 0.00 0.00 0.00 2.40
928 3937 1.698506 CTCTGGAAGGCGTAGGAGAT 58.301 55.000 0.00 0.00 0.00 2.75
929 3938 1.038130 GCTCTGGAAGGCGTAGGAGA 61.038 60.000 0.00 0.00 0.00 3.71
930 3939 1.323271 TGCTCTGGAAGGCGTAGGAG 61.323 60.000 0.00 0.00 33.58 3.69
931 3940 0.687757 ATGCTCTGGAAGGCGTAGGA 60.688 55.000 0.00 0.00 33.58 2.94
932 3941 0.249657 GATGCTCTGGAAGGCGTAGG 60.250 60.000 0.00 0.00 33.58 3.18
935 3944 2.586792 GGATGCTCTGGAAGGCGT 59.413 61.111 0.00 0.00 33.58 5.68
974 3983 2.609916 TCGATCTTGTTGTTGCAACGAA 59.390 40.909 21.10 14.49 0.00 3.85
975 3984 2.033236 GTCGATCTTGTTGTTGCAACGA 60.033 45.455 23.79 20.00 0.00 3.85
1202 4257 4.363990 CGTCGCAGCTGACCTGGT 62.364 66.667 20.43 0.00 42.03 4.00
1386 4441 4.527157 GCCGCGCTGATGCTGAAC 62.527 66.667 5.56 0.00 36.97 3.18
1495 4550 2.433334 CGAACGAGTCATTGCGCGA 61.433 57.895 12.10 0.00 35.70 5.87
1499 4554 0.785708 CAACGCGAACGAGTCATTGC 60.786 55.000 15.93 0.00 43.93 3.56
1558 4619 3.726517 CGTGCAGTTTCCCGGCAG 61.727 66.667 0.00 0.00 45.11 4.85
1647 4712 3.612860 CGACCGTGTATTCCAGAAGAAAG 59.387 47.826 0.00 0.00 38.21 2.62
1729 4794 1.754745 GGCAGTGACACTCCAAGGA 59.245 57.895 4.74 0.00 0.00 3.36
1730 4795 1.302832 GGGCAGTGACACTCCAAGG 60.303 63.158 19.39 6.10 0.00 3.61
1734 4799 3.311110 TCGGGGCAGTGACACTCC 61.311 66.667 4.74 9.99 0.00 3.85
1819 4884 5.708230 AGATCTAATTAGCAGGTCTACGGAG 59.292 44.000 7.67 0.00 0.00 4.63
1823 4888 6.866248 GCTTGAGATCTAATTAGCAGGTCTAC 59.134 42.308 7.67 4.51 0.00 2.59
1839 4904 6.128956 CGAGATAATTTCCGAAGCTTGAGATC 60.129 42.308 2.10 0.00 0.00 2.75
1840 4905 5.694006 CGAGATAATTTCCGAAGCTTGAGAT 59.306 40.000 2.10 0.00 0.00 2.75
1877 4951 7.166691 ACACGTTTGAGGTAATACTGATACT 57.833 36.000 0.00 0.00 0.00 2.12
1878 4952 7.823149 AACACGTTTGAGGTAATACTGATAC 57.177 36.000 0.00 0.00 0.00 2.24
1911 4985 0.811915 GGCTCTCGCAGTCACTTAGA 59.188 55.000 0.00 0.00 38.10 2.10
1913 4987 0.966179 TTGGCTCTCGCAGTCACTTA 59.034 50.000 0.00 0.00 36.03 2.24
1921 4996 3.573772 CTGTCCGTTGGCTCTCGCA 62.574 63.158 0.00 0.00 38.10 5.10
1923 4998 2.125912 CCTGTCCGTTGGCTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
1944 5019 2.110753 TGGCTGGGGCTACATACATA 57.889 50.000 0.00 0.00 38.73 2.29
1945 5020 1.074405 CATGGCTGGGGCTACATACAT 59.926 52.381 0.00 0.00 38.73 2.29
1947 5022 0.890996 GCATGGCTGGGGCTACATAC 60.891 60.000 0.00 0.00 38.73 2.39
1960 5041 1.405391 GGTTTAACCACATGGCATGGC 60.405 52.381 29.49 13.29 41.31 4.40
1979 5060 5.808030 ACAAATGTGTTCCTTTAAACGTTGG 59.192 36.000 0.00 0.00 32.58 3.77
1981 5062 9.589111 AATAACAAATGTGTTCCTTTAAACGTT 57.411 25.926 4.02 0.00 45.00 3.99
1982 5063 9.589111 AAATAACAAATGTGTTCCTTTAAACGT 57.411 25.926 4.02 0.00 45.00 3.99
1990 5071 7.092716 GCATGAGAAATAACAAATGTGTTCCT 58.907 34.615 4.02 0.00 45.00 3.36
1992 5073 7.872163 TGCATGAGAAATAACAAATGTGTTC 57.128 32.000 4.02 0.00 45.00 3.18
2008 5181 7.541783 CCGAAATTTATTTTCAGTTGCATGAGA 59.458 33.333 0.00 0.00 43.32 3.27
2054 5227 2.352651 CTCCACAGCGTATTGTCAATGG 59.647 50.000 8.39 0.73 0.00 3.16
2058 5231 2.159099 GGATCTCCACAGCGTATTGTCA 60.159 50.000 0.00 0.00 35.64 3.58
2078 5251 2.872038 GCTATCTAATGCGGGACCTTGG 60.872 54.545 0.00 0.00 0.00 3.61
2080 5253 2.047061 TGCTATCTAATGCGGGACCTT 58.953 47.619 0.00 0.00 0.00 3.50
2081 5254 1.717032 TGCTATCTAATGCGGGACCT 58.283 50.000 0.00 0.00 0.00 3.85
2082 5255 2.143925 GTTGCTATCTAATGCGGGACC 58.856 52.381 0.00 0.00 0.00 4.46
2083 5256 2.143925 GGTTGCTATCTAATGCGGGAC 58.856 52.381 0.00 0.00 0.00 4.46
2084 5257 2.047061 AGGTTGCTATCTAATGCGGGA 58.953 47.619 0.00 0.00 0.00 5.14
2085 5258 2.146342 CAGGTTGCTATCTAATGCGGG 58.854 52.381 0.00 0.00 0.00 6.13
2086 5259 2.146342 CCAGGTTGCTATCTAATGCGG 58.854 52.381 0.00 0.00 0.00 5.69
2087 5260 1.532868 GCCAGGTTGCTATCTAATGCG 59.467 52.381 0.00 0.00 0.00 4.73
2089 5262 4.454678 TCTTGCCAGGTTGCTATCTAATG 58.545 43.478 0.00 0.00 0.00 1.90
2090 5263 4.445448 CCTCTTGCCAGGTTGCTATCTAAT 60.445 45.833 0.00 0.00 0.00 1.73
2091 5264 3.118261 CCTCTTGCCAGGTTGCTATCTAA 60.118 47.826 0.00 0.00 0.00 2.10
2092 5265 2.435805 CCTCTTGCCAGGTTGCTATCTA 59.564 50.000 0.00 0.00 0.00 1.98
2093 5266 1.211457 CCTCTTGCCAGGTTGCTATCT 59.789 52.381 0.00 0.00 0.00 1.98
2095 5268 0.995024 ACCTCTTGCCAGGTTGCTAT 59.005 50.000 0.00 0.00 45.24 2.97
2096 5269 1.555075 CTACCTCTTGCCAGGTTGCTA 59.445 52.381 4.54 0.00 45.24 3.49
2097 5270 0.326264 CTACCTCTTGCCAGGTTGCT 59.674 55.000 4.54 0.00 45.24 3.91
2098 5271 0.678048 CCTACCTCTTGCCAGGTTGC 60.678 60.000 4.54 0.00 45.24 4.17
2099 5272 0.984230 TCCTACCTCTTGCCAGGTTG 59.016 55.000 4.54 3.32 45.24 3.77
2100 5273 1.742308 TTCCTACCTCTTGCCAGGTT 58.258 50.000 4.54 0.00 45.24 3.50
2103 5276 1.748591 GCCATTCCTACCTCTTGCCAG 60.749 57.143 0.00 0.00 0.00 4.85
2104 5277 0.255890 GCCATTCCTACCTCTTGCCA 59.744 55.000 0.00 0.00 0.00 4.92
2107 5280 1.154205 CGCGCCATTCCTACCTCTTG 61.154 60.000 0.00 0.00 0.00 3.02
2108 5281 1.144057 CGCGCCATTCCTACCTCTT 59.856 57.895 0.00 0.00 0.00 2.85
2109 5282 2.797278 CCGCGCCATTCCTACCTCT 61.797 63.158 0.00 0.00 0.00 3.69
2110 5283 2.280186 CCGCGCCATTCCTACCTC 60.280 66.667 0.00 0.00 0.00 3.85
2111 5284 3.081409 ACCGCGCCATTCCTACCT 61.081 61.111 0.00 0.00 0.00 3.08
2112 5285 2.895372 CACCGCGCCATTCCTACC 60.895 66.667 0.00 0.00 0.00 3.18
2113 5286 1.883084 CTCACCGCGCCATTCCTAC 60.883 63.158 0.00 0.00 0.00 3.18
2114 5287 2.499205 CTCACCGCGCCATTCCTA 59.501 61.111 0.00 0.00 0.00 2.94
2122 5295 3.945434 CATCATGGCTCACCGCGC 61.945 66.667 0.00 0.00 40.44 6.86
2123 5296 2.512286 ACATCATGGCTCACCGCG 60.512 61.111 0.00 0.00 40.44 6.46
2124 5297 1.450134 TGACATCATGGCTCACCGC 60.450 57.895 0.00 0.00 39.70 5.68
2125 5298 1.423721 CGTGACATCATGGCTCACCG 61.424 60.000 0.00 0.00 39.70 4.94
2126 5299 1.091771 CCGTGACATCATGGCTCACC 61.092 60.000 7.19 0.00 45.06 4.02
2127 5300 2.387309 CCGTGACATCATGGCTCAC 58.613 57.895 7.19 0.00 45.06 3.51
2128 5301 4.939399 CCGTGACATCATGGCTCA 57.061 55.556 7.19 0.00 45.06 4.26
2142 5315 2.238701 ATTCCTTGCCTTCCCCCGT 61.239 57.895 0.00 0.00 0.00 5.28
2144 5317 0.684479 GTCATTCCTTGCCTTCCCCC 60.684 60.000 0.00 0.00 0.00 5.40
2147 5320 1.740025 CGAAGTCATTCCTTGCCTTCC 59.260 52.381 0.00 0.00 37.08 3.46
2160 5333 1.344065 TCCTACCTTTGGCGAAGTCA 58.656 50.000 13.34 0.00 45.30 3.41
2161 5334 2.467566 TTCCTACCTTTGGCGAAGTC 57.532 50.000 13.34 0.00 33.29 3.01
2166 5548 1.094785 CACCATTCCTACCTTTGGCG 58.905 55.000 0.00 0.00 32.26 5.69
2167 5549 0.817654 GCACCATTCCTACCTTTGGC 59.182 55.000 0.00 0.00 32.26 4.52
2171 5553 1.077716 GCCGCACCATTCCTACCTT 60.078 57.895 0.00 0.00 0.00 3.50
2193 5575 2.040213 CTTCACCCGCGACATCATGC 62.040 60.000 8.23 0.00 0.00 4.06
2197 5579 3.195698 GCCTTCACCCGCGACATC 61.196 66.667 8.23 0.00 0.00 3.06
2202 5584 4.697756 TCCTTGCCTTCACCCGCG 62.698 66.667 0.00 0.00 0.00 6.46
2224 5606 1.754621 CCTACCTCCAGCTGCGAGA 60.755 63.158 25.15 11.29 0.00 4.04
2230 5612 1.690219 CGCCATTCCTACCTCCAGCT 61.690 60.000 0.00 0.00 0.00 4.24
2232 5614 1.227674 GCGCCATTCCTACCTCCAG 60.228 63.158 0.00 0.00 0.00 3.86
2233 5615 2.908015 GCGCCATTCCTACCTCCA 59.092 61.111 0.00 0.00 0.00 3.86
2249 5661 3.643978 GACATCATGGCTCGCCGC 61.644 66.667 3.14 0.00 39.42 6.53
2262 5674 0.033796 CCTGCCTTGACCCATGACAT 60.034 55.000 0.00 0.00 0.00 3.06
2273 5685 1.089920 CGAAGTCATTCCCTGCCTTG 58.910 55.000 0.00 0.00 31.21 3.61
2292 5705 4.425520 GTCTCGCTATTCCTACATATGGC 58.574 47.826 7.80 0.00 0.00 4.40
2342 5755 9.836864 ACAGAAAAATTTGAAGAGGCTTTATTT 57.163 25.926 0.00 0.00 0.00 1.40
2343 5756 9.481340 GACAGAAAAATTTGAAGAGGCTTTATT 57.519 29.630 0.00 0.00 0.00 1.40
2344 5757 8.090831 GGACAGAAAAATTTGAAGAGGCTTTAT 58.909 33.333 0.00 0.00 0.00 1.40
2345 5758 7.433680 GGACAGAAAAATTTGAAGAGGCTTTA 58.566 34.615 0.00 0.00 0.00 1.85
2346 5759 6.283694 GGACAGAAAAATTTGAAGAGGCTTT 58.716 36.000 0.00 0.00 0.00 3.51
2347 5760 5.507985 CGGACAGAAAAATTTGAAGAGGCTT 60.508 40.000 0.00 0.00 0.00 4.35
2348 5761 4.022849 CGGACAGAAAAATTTGAAGAGGCT 60.023 41.667 0.00 0.00 0.00 4.58
2349 5762 4.229876 CGGACAGAAAAATTTGAAGAGGC 58.770 43.478 0.00 0.00 0.00 4.70
2350 5763 4.022849 AGCGGACAGAAAAATTTGAAGAGG 60.023 41.667 0.00 0.00 0.00 3.69
2351 5764 5.113502 AGCGGACAGAAAAATTTGAAGAG 57.886 39.130 0.00 0.00 0.00 2.85
2352 5765 5.514274 AAGCGGACAGAAAAATTTGAAGA 57.486 34.783 0.00 0.00 0.00 2.87
2353 5766 5.748152 TCAAAGCGGACAGAAAAATTTGAAG 59.252 36.000 0.00 0.00 33.59 3.02
2354 5767 5.655488 TCAAAGCGGACAGAAAAATTTGAA 58.345 33.333 0.00 0.00 33.59 2.69
2355 5768 5.255710 TCAAAGCGGACAGAAAAATTTGA 57.744 34.783 0.00 0.00 33.97 2.69
2356 5769 6.200665 TCAATCAAAGCGGACAGAAAAATTTG 59.799 34.615 0.00 0.00 0.00 2.32
2357 5770 6.279882 TCAATCAAAGCGGACAGAAAAATTT 58.720 32.000 0.00 0.00 0.00 1.82
2358 5771 5.841810 TCAATCAAAGCGGACAGAAAAATT 58.158 33.333 0.00 0.00 0.00 1.82
2359 5772 5.452078 TCAATCAAAGCGGACAGAAAAAT 57.548 34.783 0.00 0.00 0.00 1.82
2360 5773 4.909696 TCAATCAAAGCGGACAGAAAAA 57.090 36.364 0.00 0.00 0.00 1.94
2361 5774 5.937540 TCTATCAATCAAAGCGGACAGAAAA 59.062 36.000 0.00 0.00 0.00 2.29
2362 5775 5.487433 TCTATCAATCAAAGCGGACAGAAA 58.513 37.500 0.00 0.00 0.00 2.52
2363 5776 5.084818 TCTATCAATCAAAGCGGACAGAA 57.915 39.130 0.00 0.00 0.00 3.02
2364 5777 4.736126 TCTATCAATCAAAGCGGACAGA 57.264 40.909 0.00 0.00 0.00 3.41
2365 5778 5.801350 TTTCTATCAATCAAAGCGGACAG 57.199 39.130 0.00 0.00 0.00 3.51
2366 5779 6.757897 AATTTCTATCAATCAAAGCGGACA 57.242 33.333 0.00 0.00 0.00 4.02
2367 5780 7.754924 TCAAAATTTCTATCAATCAAAGCGGAC 59.245 33.333 0.00 0.00 0.00 4.79
2368 5781 7.825681 TCAAAATTTCTATCAATCAAAGCGGA 58.174 30.769 0.00 0.00 0.00 5.54
2369 5782 8.638685 ATCAAAATTTCTATCAATCAAAGCGG 57.361 30.769 0.00 0.00 0.00 5.52
2370 5783 8.749499 GGATCAAAATTTCTATCAATCAAAGCG 58.251 33.333 12.33 0.00 0.00 4.68
2371 5784 9.590451 TGGATCAAAATTTCTATCAATCAAAGC 57.410 29.630 12.33 0.00 0.00 3.51
2388 5801 9.334947 TCAATTGCAAACTATTTTGGATCAAAA 57.665 25.926 1.71 8.04 45.41 2.44
2389 5802 8.899427 TCAATTGCAAACTATTTTGGATCAAA 57.101 26.923 1.71 0.00 42.05 2.69
2390 5803 9.153721 GATCAATTGCAAACTATTTTGGATCAA 57.846 29.630 1.71 4.24 42.05 2.57
2391 5804 8.533657 AGATCAATTGCAAACTATTTTGGATCA 58.466 29.630 1.71 3.73 42.05 2.92
2392 5805 8.937634 AGATCAATTGCAAACTATTTTGGATC 57.062 30.769 1.71 3.17 42.05 3.36
2402 5815 9.374838 GAATTTCCATAAGATCAATTGCAAACT 57.625 29.630 1.71 0.00 0.00 2.66
2403 5816 8.606602 GGAATTTCCATAAGATCAATTGCAAAC 58.393 33.333 10.67 0.00 36.28 2.93
2404 5817 8.542080 AGGAATTTCCATAAGATCAATTGCAAA 58.458 29.630 17.57 0.00 39.61 3.68
2405 5818 7.982919 CAGGAATTTCCATAAGATCAATTGCAA 59.017 33.333 17.57 0.00 39.61 4.08
2406 5819 7.418139 CCAGGAATTTCCATAAGATCAATTGCA 60.418 37.037 17.57 0.00 39.61 4.08
2407 5820 6.927381 CCAGGAATTTCCATAAGATCAATTGC 59.073 38.462 17.57 0.00 39.61 3.56
2408 5821 8.241497 TCCAGGAATTTCCATAAGATCAATTG 57.759 34.615 17.57 0.00 39.61 2.32
2409 5822 8.867097 CATCCAGGAATTTCCATAAGATCAATT 58.133 33.333 17.57 0.00 39.61 2.32
2410 5823 7.453752 CCATCCAGGAATTTCCATAAGATCAAT 59.546 37.037 17.57 0.00 39.61 2.57
2411 5824 6.779049 CCATCCAGGAATTTCCATAAGATCAA 59.221 38.462 17.57 0.00 39.61 2.57
2412 5825 6.103057 TCCATCCAGGAATTTCCATAAGATCA 59.897 38.462 17.57 1.28 45.65 2.92
2413 5826 6.546484 TCCATCCAGGAATTTCCATAAGATC 58.454 40.000 17.57 0.00 45.65 2.75
2414 5827 6.535161 TCCATCCAGGAATTTCCATAAGAT 57.465 37.500 17.57 10.10 45.65 2.40
2415 5828 5.992564 TCCATCCAGGAATTTCCATAAGA 57.007 39.130 17.57 8.37 45.65 2.10
2427 5840 4.873746 GAATATTCGAGTCCATCCAGGA 57.126 45.455 0.00 0.00 46.75 3.86
2441 5854 7.074502 GCAAATCCTCAATCACTCGAATATTC 58.925 38.462 5.30 5.30 0.00 1.75
2442 5855 6.293081 CGCAAATCCTCAATCACTCGAATATT 60.293 38.462 0.00 0.00 0.00 1.28
2443 5856 5.178252 CGCAAATCCTCAATCACTCGAATAT 59.822 40.000 0.00 0.00 0.00 1.28
2444 5857 4.507756 CGCAAATCCTCAATCACTCGAATA 59.492 41.667 0.00 0.00 0.00 1.75
2445 5858 3.310774 CGCAAATCCTCAATCACTCGAAT 59.689 43.478 0.00 0.00 0.00 3.34
2446 5859 2.672874 CGCAAATCCTCAATCACTCGAA 59.327 45.455 0.00 0.00 0.00 3.71
2447 5860 2.270923 CGCAAATCCTCAATCACTCGA 58.729 47.619 0.00 0.00 0.00 4.04
2448 5861 2.002586 ACGCAAATCCTCAATCACTCG 58.997 47.619 0.00 0.00 0.00 4.18
2449 5862 2.352960 GGACGCAAATCCTCAATCACTC 59.647 50.000 0.00 0.00 35.68 3.51
2450 5863 2.359900 GGACGCAAATCCTCAATCACT 58.640 47.619 0.00 0.00 35.68 3.41
2451 5864 1.401905 GGGACGCAAATCCTCAATCAC 59.598 52.381 0.00 0.00 38.95 3.06
2452 5865 1.004161 TGGGACGCAAATCCTCAATCA 59.996 47.619 0.00 0.00 38.95 2.57
2453 5866 1.401905 GTGGGACGCAAATCCTCAATC 59.598 52.381 0.00 0.00 38.95 2.67
2454 5867 1.463674 GTGGGACGCAAATCCTCAAT 58.536 50.000 0.00 0.00 38.95 2.57
2455 5868 2.941210 GTGGGACGCAAATCCTCAA 58.059 52.632 0.00 0.00 38.95 3.02
2456 5869 4.713946 GTGGGACGCAAATCCTCA 57.286 55.556 0.00 0.00 38.95 3.86
2465 5878 0.249398 ATGGTAGTTCTGTGGGACGC 59.751 55.000 0.00 0.00 40.62 5.19
2466 5879 2.762535 AATGGTAGTTCTGTGGGACG 57.237 50.000 0.00 0.00 0.00 4.79
2467 5880 6.887626 TTTAAAATGGTAGTTCTGTGGGAC 57.112 37.500 0.00 0.00 0.00 4.46
2468 5881 7.899648 TTTTTAAAATGGTAGTTCTGTGGGA 57.100 32.000 0.55 0.00 0.00 4.37
2489 5902 5.648960 TCTTGGTAGTTTTCGGTCACTTTTT 59.351 36.000 0.00 0.00 0.00 1.94
2490 5903 5.187687 TCTTGGTAGTTTTCGGTCACTTTT 58.812 37.500 0.00 0.00 0.00 2.27
2491 5904 4.773013 TCTTGGTAGTTTTCGGTCACTTT 58.227 39.130 0.00 0.00 0.00 2.66
2492 5905 4.411256 TCTTGGTAGTTTTCGGTCACTT 57.589 40.909 0.00 0.00 0.00 3.16
2493 5906 4.618920 ATCTTGGTAGTTTTCGGTCACT 57.381 40.909 0.00 0.00 0.00 3.41
2494 5907 5.684550 AAATCTTGGTAGTTTTCGGTCAC 57.315 39.130 0.00 0.00 0.00 3.67
2495 5908 7.989416 ATAAAATCTTGGTAGTTTTCGGTCA 57.011 32.000 0.00 0.00 0.00 4.02
2532 5945 8.847196 GGTCTTTATCTGAAAGTGGTAGTTTTT 58.153 33.333 0.00 0.00 33.76 1.94
2533 5946 7.996644 TGGTCTTTATCTGAAAGTGGTAGTTTT 59.003 33.333 0.00 0.00 33.76 2.43
2534 5947 7.514721 TGGTCTTTATCTGAAAGTGGTAGTTT 58.485 34.615 0.00 0.00 33.76 2.66
2535 5948 7.074653 TGGTCTTTATCTGAAAGTGGTAGTT 57.925 36.000 0.00 0.00 33.76 2.24
2536 5949 6.270231 ACTGGTCTTTATCTGAAAGTGGTAGT 59.730 38.462 0.00 0.00 33.76 2.73
2537 5950 6.702329 ACTGGTCTTTATCTGAAAGTGGTAG 58.298 40.000 0.00 0.00 33.76 3.18
2538 5951 6.681729 ACTGGTCTTTATCTGAAAGTGGTA 57.318 37.500 0.00 0.00 33.76 3.25
2539 5952 5.568620 ACTGGTCTTTATCTGAAAGTGGT 57.431 39.130 0.00 0.00 33.76 4.16
2540 5953 6.884280 AAACTGGTCTTTATCTGAAAGTGG 57.116 37.500 0.00 0.00 33.76 4.00
2541 5954 8.713271 GTCTAAACTGGTCTTTATCTGAAAGTG 58.287 37.037 0.00 0.00 33.76 3.16
2542 5955 7.599245 CGTCTAAACTGGTCTTTATCTGAAAGT 59.401 37.037 0.00 0.00 33.76 2.66
2543 5956 7.813148 TCGTCTAAACTGGTCTTTATCTGAAAG 59.187 37.037 0.00 0.00 0.00 2.62
2544 5957 7.663827 TCGTCTAAACTGGTCTTTATCTGAAA 58.336 34.615 0.00 0.00 0.00 2.69
2545 5958 7.223260 TCGTCTAAACTGGTCTTTATCTGAA 57.777 36.000 0.00 0.00 0.00 3.02
2546 5959 6.829229 TCGTCTAAACTGGTCTTTATCTGA 57.171 37.500 0.00 0.00 0.00 3.27
2547 5960 8.480643 AAATCGTCTAAACTGGTCTTTATCTG 57.519 34.615 0.00 0.00 0.00 2.90
2550 5963 8.880750 GCTTAAATCGTCTAAACTGGTCTTTAT 58.119 33.333 0.00 0.00 0.00 1.40
2551 5964 7.062605 CGCTTAAATCGTCTAAACTGGTCTTTA 59.937 37.037 0.00 0.00 0.00 1.85
2552 5965 6.128634 CGCTTAAATCGTCTAAACTGGTCTTT 60.129 38.462 0.00 0.00 0.00 2.52
2553 5966 5.347907 CGCTTAAATCGTCTAAACTGGTCTT 59.652 40.000 0.00 0.00 0.00 3.01
2554 5967 4.863131 CGCTTAAATCGTCTAAACTGGTCT 59.137 41.667 0.00 0.00 0.00 3.85
2555 5968 4.624452 ACGCTTAAATCGTCTAAACTGGTC 59.376 41.667 0.00 0.00 34.84 4.02
2556 5969 4.387862 CACGCTTAAATCGTCTAAACTGGT 59.612 41.667 0.10 0.00 38.19 4.00
2557 5970 4.387862 ACACGCTTAAATCGTCTAAACTGG 59.612 41.667 0.10 0.00 38.19 4.00
2558 5971 5.511088 ACACGCTTAAATCGTCTAAACTG 57.489 39.130 0.10 0.00 38.19 3.16
2559 5972 5.464389 ACAACACGCTTAAATCGTCTAAACT 59.536 36.000 0.10 0.00 38.19 2.66
2560 5973 5.673029 ACAACACGCTTAAATCGTCTAAAC 58.327 37.500 0.10 0.00 38.19 2.01
2561 5974 5.462729 TGACAACACGCTTAAATCGTCTAAA 59.537 36.000 0.10 0.00 38.19 1.85
2562 5975 4.983538 TGACAACACGCTTAAATCGTCTAA 59.016 37.500 0.10 0.00 38.19 2.10
2563 5976 4.548494 TGACAACACGCTTAAATCGTCTA 58.452 39.130 0.10 0.00 38.19 2.59
2564 5977 3.386486 TGACAACACGCTTAAATCGTCT 58.614 40.909 0.10 0.00 38.19 4.18
2565 5978 3.781341 TGACAACACGCTTAAATCGTC 57.219 42.857 0.10 0.00 38.19 4.20
2566 5979 4.034742 ACTTTGACAACACGCTTAAATCGT 59.965 37.500 0.00 0.00 41.28 3.73
2567 5980 4.523813 ACTTTGACAACACGCTTAAATCG 58.476 39.130 0.00 0.00 0.00 3.34
2568 5981 5.507077 TGACTTTGACAACACGCTTAAATC 58.493 37.500 0.00 0.00 0.00 2.17
2569 5982 5.493133 TGACTTTGACAACACGCTTAAAT 57.507 34.783 0.00 0.00 0.00 1.40
2570 5983 4.948608 TGACTTTGACAACACGCTTAAA 57.051 36.364 0.00 0.00 0.00 1.52
2571 5984 4.654015 GTTGACTTTGACAACACGCTTAA 58.346 39.130 0.00 0.00 44.49 1.85
2572 5985 3.242155 CGTTGACTTTGACAACACGCTTA 60.242 43.478 0.00 0.00 45.09 3.09
2573 5986 2.475519 CGTTGACTTTGACAACACGCTT 60.476 45.455 0.00 0.00 45.09 4.68
2574 5987 1.062002 CGTTGACTTTGACAACACGCT 59.938 47.619 0.00 0.00 45.09 5.07
2575 5988 1.452717 CGTTGACTTTGACAACACGC 58.547 50.000 0.00 0.00 45.09 5.34
2576 5989 1.062002 AGCGTTGACTTTGACAACACG 59.938 47.619 0.00 0.00 45.09 4.49
2577 5990 2.825086 AGCGTTGACTTTGACAACAC 57.175 45.000 0.00 0.00 45.09 3.32
2578 5991 3.242155 CGTTAGCGTTGACTTTGACAACA 60.242 43.478 0.00 0.00 45.09 3.33
2579 5992 3.277481 CGTTAGCGTTGACTTTGACAAC 58.723 45.455 0.00 0.00 42.54 3.32
2580 5993 3.579147 CGTTAGCGTTGACTTTGACAA 57.421 42.857 0.00 0.00 0.00 3.18
2593 6006 0.108804 ACAGATGACCCACGTTAGCG 60.109 55.000 0.00 0.00 44.93 4.26
2594 6007 1.067142 TGACAGATGACCCACGTTAGC 60.067 52.381 0.00 0.00 0.00 3.09
2595 6008 2.993899 GTTGACAGATGACCCACGTTAG 59.006 50.000 0.00 0.00 0.00 2.34
2596 6009 2.365941 TGTTGACAGATGACCCACGTTA 59.634 45.455 0.00 0.00 0.00 3.18
2597 6010 1.140052 TGTTGACAGATGACCCACGTT 59.860 47.619 0.00 0.00 0.00 3.99
2598 6011 0.756294 TGTTGACAGATGACCCACGT 59.244 50.000 0.00 0.00 0.00 4.49
2599 6012 1.148310 GTGTTGACAGATGACCCACG 58.852 55.000 0.00 0.00 0.00 4.94
2600 6013 2.550830 AGTGTTGACAGATGACCCAC 57.449 50.000 0.00 0.00 0.00 4.61
2601 6014 2.028112 GCTAGTGTTGACAGATGACCCA 60.028 50.000 0.00 0.00 0.00 4.51
2602 6015 2.622436 GCTAGTGTTGACAGATGACCC 58.378 52.381 0.00 0.00 0.00 4.46
2603 6016 2.263077 CGCTAGTGTTGACAGATGACC 58.737 52.381 0.00 0.00 0.00 4.02
2604 6017 2.263077 CCGCTAGTGTTGACAGATGAC 58.737 52.381 1.99 0.00 0.00 3.06
2605 6018 1.404181 GCCGCTAGTGTTGACAGATGA 60.404 52.381 1.99 0.00 0.00 2.92
2606 6019 1.002366 GCCGCTAGTGTTGACAGATG 58.998 55.000 1.99 0.00 0.00 2.90
2607 6020 0.898320 AGCCGCTAGTGTTGACAGAT 59.102 50.000 1.99 0.00 0.00 2.90
2608 6021 0.243907 GAGCCGCTAGTGTTGACAGA 59.756 55.000 1.99 0.00 0.00 3.41
2609 6022 0.038251 TGAGCCGCTAGTGTTGACAG 60.038 55.000 1.99 0.00 0.00 3.51
2610 6023 0.038251 CTGAGCCGCTAGTGTTGACA 60.038 55.000 1.99 0.00 0.00 3.58
2611 6024 0.038159 ACTGAGCCGCTAGTGTTGAC 60.038 55.000 1.99 0.00 0.00 3.18
2612 6025 0.243907 GACTGAGCCGCTAGTGTTGA 59.756 55.000 1.99 0.00 0.00 3.18
2613 6026 1.073216 CGACTGAGCCGCTAGTGTTG 61.073 60.000 1.99 0.00 0.00 3.33
2614 6027 1.213013 CGACTGAGCCGCTAGTGTT 59.787 57.895 1.99 0.00 0.00 3.32
2615 6028 1.972223 ACGACTGAGCCGCTAGTGT 60.972 57.895 1.99 0.00 0.00 3.55
2616 6029 1.515088 CACGACTGAGCCGCTAGTG 60.515 63.158 0.00 0.00 0.00 2.74
2617 6030 2.878429 CACGACTGAGCCGCTAGT 59.122 61.111 0.00 0.00 0.00 2.57
2618 6031 2.580867 GCACGACTGAGCCGCTAG 60.581 66.667 0.00 0.00 0.00 3.42
2619 6032 3.052620 GAGCACGACTGAGCCGCTA 62.053 63.158 0.00 0.00 31.86 4.26
2620 6033 4.427661 GAGCACGACTGAGCCGCT 62.428 66.667 0.00 0.00 35.14 5.52
2622 6035 3.898627 AACGAGCACGACTGAGCCG 62.899 63.158 11.40 0.00 42.66 5.52
2623 6036 2.049063 AACGAGCACGACTGAGCC 60.049 61.111 11.40 0.00 42.66 4.70
2624 6037 3.004734 GCAACGAGCACGACTGAGC 62.005 63.158 11.40 2.83 44.79 4.26
2625 6038 3.150895 GCAACGAGCACGACTGAG 58.849 61.111 11.40 0.00 44.79 3.35
2635 6048 3.114616 CAGCACGGAGGCAACGAG 61.115 66.667 7.83 1.16 46.39 4.18
2636 6049 3.158537 TTCAGCACGGAGGCAACGA 62.159 57.895 7.83 0.00 46.39 3.85
2637 6050 2.664851 TTCAGCACGGAGGCAACG 60.665 61.111 0.00 0.00 46.39 4.10
2638 6051 2.946762 GTTCAGCACGGAGGCAAC 59.053 61.111 0.00 0.00 35.83 4.17
2639 6052 2.664851 CGTTCAGCACGGAGGCAA 60.665 61.111 0.00 0.00 45.89 4.52
2650 6063 4.025401 GCCGTTGGTGGCGTTCAG 62.025 66.667 0.00 0.00 46.75 3.02
2664 6077 2.355363 TCAACGTCAACGAGGCCG 60.355 61.111 9.88 0.00 43.02 6.13
2665 6078 2.027625 CCTCAACGTCAACGAGGCC 61.028 63.158 9.88 0.00 39.95 5.19
2666 6079 3.550656 CCTCAACGTCAACGAGGC 58.449 61.111 9.88 0.00 39.95 4.70
2668 6081 1.002250 CCGACCTCAACGTCAACGAG 61.002 60.000 9.88 1.71 43.02 4.18
2669 6082 1.008194 CCGACCTCAACGTCAACGA 60.008 57.895 9.88 0.00 43.02 3.85
2670 6083 2.654912 GCCGACCTCAACGTCAACG 61.655 63.158 0.12 0.12 46.33 4.10
2671 6084 1.282930 GAGCCGACCTCAACGTCAAC 61.283 60.000 0.00 0.00 40.45 3.18
2672 6085 1.006571 GAGCCGACCTCAACGTCAA 60.007 57.895 0.00 0.00 40.45 3.18
2673 6086 2.649034 GAGCCGACCTCAACGTCA 59.351 61.111 0.00 0.00 40.45 4.35
2674 6087 2.504244 CGAGCCGACCTCAACGTC 60.504 66.667 0.00 0.00 40.78 4.34
2675 6088 2.853290 AACGAGCCGACCTCAACGT 61.853 57.895 1.50 0.00 40.78 3.99
2676 6089 2.049433 AACGAGCCGACCTCAACG 60.049 61.111 1.50 0.00 40.78 4.10
2677 6090 1.006571 TCAACGAGCCGACCTCAAC 60.007 57.895 1.50 0.00 40.78 3.18
2678 6091 1.289066 CTCAACGAGCCGACCTCAA 59.711 57.895 1.50 0.00 40.78 3.02
2679 6092 2.962569 CTCAACGAGCCGACCTCA 59.037 61.111 1.50 0.00 40.78 3.86
2688 6101 0.872021 GCCCATACGAGCTCAACGAG 60.872 60.000 15.40 0.00 34.70 4.18
2689 6102 1.141019 GCCCATACGAGCTCAACGA 59.859 57.895 15.40 0.00 34.70 3.85
2690 6103 1.883084 GGCCCATACGAGCTCAACG 60.883 63.158 15.40 2.72 0.00 4.10
2691 6104 1.883084 CGGCCCATACGAGCTCAAC 60.883 63.158 15.40 0.00 0.00 3.18
2692 6105 2.499205 CGGCCCATACGAGCTCAA 59.501 61.111 15.40 0.71 0.00 3.02
2693 6106 4.221422 GCGGCCCATACGAGCTCA 62.221 66.667 15.40 0.00 0.00 4.26
2724 6137 3.103911 GTGACGTTCAGGCCGACG 61.104 66.667 22.09 22.09 44.34 5.12
2725 6138 2.737376 GGTGACGTTCAGGCCGAC 60.737 66.667 0.00 0.00 0.00 4.79
2726 6139 2.501223 GATGGTGACGTTCAGGCCGA 62.501 60.000 0.00 0.00 0.00 5.54
2727 6140 2.047274 ATGGTGACGTTCAGGCCG 60.047 61.111 0.00 0.00 0.00 6.13
2728 6141 1.003839 TGATGGTGACGTTCAGGCC 60.004 57.895 0.00 0.00 0.00 5.19
2729 6142 1.626654 CGTGATGGTGACGTTCAGGC 61.627 60.000 0.00 0.00 32.06 4.85
2730 6143 1.626654 GCGTGATGGTGACGTTCAGG 61.627 60.000 0.00 0.00 39.08 3.86
2731 6144 1.626654 GGCGTGATGGTGACGTTCAG 61.627 60.000 0.00 0.00 39.08 3.02
2732 6145 1.666553 GGCGTGATGGTGACGTTCA 60.667 57.895 0.00 0.00 39.08 3.18
2733 6146 2.388232 GGGCGTGATGGTGACGTTC 61.388 63.158 0.00 0.00 39.08 3.95
2734 6147 2.358247 GGGCGTGATGGTGACGTT 60.358 61.111 0.00 0.00 39.08 3.99
2735 6148 3.171828 TTGGGCGTGATGGTGACGT 62.172 57.895 0.00 0.00 39.08 4.34
2736 6149 2.358125 TTGGGCGTGATGGTGACG 60.358 61.111 0.00 0.00 39.87 4.35
2737 6150 2.332654 GGTTGGGCGTGATGGTGAC 61.333 63.158 0.00 0.00 0.00 3.67
2738 6151 2.033448 GGTTGGGCGTGATGGTGA 59.967 61.111 0.00 0.00 0.00 4.02
2739 6152 3.430862 CGGTTGGGCGTGATGGTG 61.431 66.667 0.00 0.00 0.00 4.17
2740 6153 4.715523 CCGGTTGGGCGTGATGGT 62.716 66.667 0.00 0.00 0.00 3.55
2741 6154 4.715523 ACCGGTTGGGCGTGATGG 62.716 66.667 0.00 0.00 40.62 3.51
2742 6155 3.124921 GACCGGTTGGGCGTGATG 61.125 66.667 9.42 0.00 40.62 3.07
2765 6178 4.849329 GACTAGTGTCGGCGCCGG 62.849 72.222 44.95 30.73 40.25 6.13
2766 6179 4.111016 TGACTAGTGTCGGCGCCG 62.111 66.667 42.13 42.13 45.70 6.46
2767 6180 2.506438 GTGACTAGTGTCGGCGCC 60.506 66.667 19.07 19.07 45.70 6.53
2768 6181 2.506438 GGTGACTAGTGTCGGCGC 60.506 66.667 0.00 0.00 45.70 6.53
2769 6182 1.136984 GAGGTGACTAGTGTCGGCG 59.863 63.158 0.00 0.00 45.70 6.46
2770 6183 0.109226 GTGAGGTGACTAGTGTCGGC 60.109 60.000 0.00 0.00 45.70 5.54
2771 6184 0.526662 GGTGAGGTGACTAGTGTCGG 59.473 60.000 0.00 0.00 45.70 4.79
2772 6185 0.168348 CGGTGAGGTGACTAGTGTCG 59.832 60.000 0.00 0.00 45.70 4.35
2773 6186 1.068472 CACGGTGAGGTGACTAGTGTC 60.068 57.143 0.00 0.00 44.43 3.67
2774 6187 0.959553 CACGGTGAGGTGACTAGTGT 59.040 55.000 0.00 0.00 44.43 3.55
2775 6188 0.388649 GCACGGTGAGGTGACTAGTG 60.389 60.000 13.29 0.00 44.43 2.74
2776 6189 1.863662 CGCACGGTGAGGTGACTAGT 61.864 60.000 13.29 0.00 44.43 2.57
2777 6190 1.154016 CGCACGGTGAGGTGACTAG 60.154 63.158 13.29 0.00 44.43 2.57
2778 6191 2.632544 CCGCACGGTGAGGTGACTA 61.633 63.158 21.09 0.00 44.43 2.59
2780 6193 3.296709 ATCCGCACGGTGAGGTGAC 62.297 63.158 26.65 1.25 40.38 3.67
2781 6194 2.994995 ATCCGCACGGTGAGGTGA 60.995 61.111 26.65 12.11 40.38 4.02
2782 6195 2.509336 GATCCGCACGGTGAGGTG 60.509 66.667 26.65 6.33 38.55 4.00
2783 6196 4.129737 CGATCCGCACGGTGAGGT 62.130 66.667 26.65 16.04 38.55 3.85
2784 6197 3.758088 CTCGATCCGCACGGTGAGG 62.758 68.421 23.00 23.00 38.79 3.86
2785 6198 1.712018 TACTCGATCCGCACGGTGAG 61.712 60.000 13.29 19.49 36.73 3.51
2786 6199 1.746239 TACTCGATCCGCACGGTGA 60.746 57.895 13.29 5.27 36.47 4.02
2787 6200 1.585521 GTACTCGATCCGCACGGTG 60.586 63.158 9.23 3.15 36.47 4.94
2788 6201 2.796651 GTACTCGATCCGCACGGT 59.203 61.111 9.23 0.00 36.47 4.83
2789 6202 2.352001 CGTACTCGATCCGCACGG 60.352 66.667 1.73 1.73 39.71 4.94
2790 6203 2.705220 TCGTACTCGATCCGCACG 59.295 61.111 0.00 0.00 41.35 5.34
2794 6207 2.098842 GGGTCGTCGTACTCGATCCG 62.099 65.000 18.69 2.65 46.15 4.18
2798 6211 2.815211 CGGGGTCGTCGTACTCGA 60.815 66.667 5.50 6.04 44.12 4.04
2799 6212 4.527157 GCGGGGTCGTCGTACTCG 62.527 72.222 6.80 6.80 38.89 4.18
2800 6213 4.527157 CGCGGGGTCGTCGTACTC 62.527 72.222 0.00 0.00 38.89 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.