Multiple sequence alignment - TraesCS3D01G033100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G033100 chr3D 100.000 2653 0 0 1 2653 12280820 12283472 0.000000e+00 4900
1 TraesCS3D01G033100 chr3A 84.566 1406 98 49 330 1667 24878801 24877447 0.000000e+00 1284
2 TraesCS3D01G033100 chr3A 91.457 199 12 1 2006 2204 24877205 24877012 4.350000e-68 268
3 TraesCS3D01G033100 chr3A 90.686 204 13 6 2454 2653 24876079 24875878 1.570000e-67 267
4 TraesCS3D01G033100 chr3A 82.867 286 24 9 2200 2460 24876705 24876420 1.590000e-57 233
5 TraesCS3D01G033100 chr3A 90.090 111 11 0 1721 1831 41182273 41182383 7.650000e-31 145
6 TraesCS3D01G033100 chr3B 85.868 743 58 21 1942 2653 17625820 17626546 0.000000e+00 747
7 TraesCS3D01G033100 chr3B 79.434 1201 92 65 613 1723 17624577 17625712 0.000000e+00 706
8 TraesCS3D01G033100 chr3B 84.496 258 28 9 319 567 17624040 17624294 7.340000e-61 244
9 TraesCS3D01G033100 chr3B 91.743 109 8 1 1722 1830 630305437 630305544 1.650000e-32 150
10 TraesCS3D01G033100 chr4A 81.132 371 58 4 1353 1723 736232652 736233010 1.200000e-73 287
11 TraesCS3D01G033100 chr2D 76.923 377 48 21 1347 1723 461539225 461539562 7.550000e-41 178
12 TraesCS3D01G033100 chr1B 93.578 109 7 0 1721 1829 626498462 626498570 2.110000e-36 163
13 TraesCS3D01G033100 chr1B 90.756 119 8 3 1721 1838 159922530 159922646 3.540000e-34 156
14 TraesCS3D01G033100 chr1B 90.741 108 10 0 1722 1829 57618135 57618242 7.650000e-31 145
15 TraesCS3D01G033100 chr1B 88.430 121 12 2 1722 1841 229263268 229263149 7.650000e-31 145
16 TraesCS3D01G033100 chr7B 83.140 172 18 3 1347 1518 641174540 641174700 2.130000e-31 147
17 TraesCS3D01G033100 chr7B 90.090 111 11 0 1722 1832 15305661 15305771 7.650000e-31 145
18 TraesCS3D01G033100 chr2A 91.509 106 9 0 1724 1829 362051403 362051298 2.130000e-31 147
19 TraesCS3D01G033100 chr5B 90.741 108 10 0 1722 1829 511610743 511610850 7.650000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G033100 chr3D 12280820 12283472 2652 False 4900.000000 4900 100.000 1 2653 1 chr3D.!!$F1 2652
1 TraesCS3D01G033100 chr3A 24875878 24878801 2923 True 513.000000 1284 87.394 330 2653 4 chr3A.!!$R1 2323
2 TraesCS3D01G033100 chr3B 17624040 17626546 2506 False 565.666667 747 83.266 319 2653 3 chr3B.!!$F2 2334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.105039 GTGAGGTAGCTGCGCCTAAT 59.895 55.0 16.48 0.0 34.81 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 2270 0.034896 GGGCTCAACTCGAACTTGGA 59.965 55.0 3.33 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.742746 TGCAACCATGAATGCACCA 58.257 47.368 17.88 0.00 46.87 4.17
20 21 1.268066 TGCAACCATGAATGCACCAT 58.732 45.000 17.88 0.00 46.87 3.55
21 22 1.066787 TGCAACCATGAATGCACCATG 60.067 47.619 17.88 18.87 46.87 3.66
25 26 1.444250 CATGAATGCACCATGGGCC 59.556 57.895 18.09 6.83 38.12 5.80
26 27 1.001888 ATGAATGCACCATGGGCCA 59.998 52.632 18.09 9.61 0.00 5.36
27 28 0.399376 ATGAATGCACCATGGGCCAT 60.399 50.000 14.78 14.78 0.00 4.40
28 29 1.044231 TGAATGCACCATGGGCCATC 61.044 55.000 18.16 15.93 0.00 3.51
29 30 1.751349 GAATGCACCATGGGCCATCC 61.751 60.000 18.16 6.06 0.00 3.51
39 40 2.844654 TGGGCCATCCATACATTTGT 57.155 45.000 0.00 0.00 41.46 2.83
40 41 2.386779 TGGGCCATCCATACATTTGTG 58.613 47.619 0.00 0.00 41.46 3.33
41 42 2.292126 TGGGCCATCCATACATTTGTGT 60.292 45.455 0.00 0.00 41.46 3.72
42 43 2.101249 GGGCCATCCATACATTTGTGTG 59.899 50.000 4.39 0.88 36.98 3.82
43 44 3.023119 GGCCATCCATACATTTGTGTGA 58.977 45.455 8.79 0.00 39.15 3.58
44 45 3.181487 GGCCATCCATACATTTGTGTGAC 60.181 47.826 8.79 0.00 39.15 3.67
45 46 3.443329 GCCATCCATACATTTGTGTGACA 59.557 43.478 8.79 0.00 39.15 3.58
46 47 4.082300 GCCATCCATACATTTGTGTGACAA 60.082 41.667 8.79 0.00 39.15 3.18
69 70 2.040359 TGGTGGGACCAGGTGTGA 60.040 61.111 0.00 0.00 44.79 3.58
70 71 2.146724 TGGTGGGACCAGGTGTGAG 61.147 63.158 0.00 0.00 44.79 3.51
71 72 1.841556 GGTGGGACCAGGTGTGAGA 60.842 63.158 0.00 0.00 38.42 3.27
72 73 1.415672 GGTGGGACCAGGTGTGAGAA 61.416 60.000 0.00 0.00 38.42 2.87
73 74 0.472471 GTGGGACCAGGTGTGAGAAA 59.528 55.000 0.00 0.00 0.00 2.52
74 75 1.073923 GTGGGACCAGGTGTGAGAAAT 59.926 52.381 0.00 0.00 0.00 2.17
75 76 2.304761 GTGGGACCAGGTGTGAGAAATA 59.695 50.000 0.00 0.00 0.00 1.40
76 77 2.304761 TGGGACCAGGTGTGAGAAATAC 59.695 50.000 0.00 0.00 0.00 1.89
77 78 2.618053 GGACCAGGTGTGAGAAATACG 58.382 52.381 0.00 0.00 0.00 3.06
78 79 2.000447 GACCAGGTGTGAGAAATACGC 59.000 52.381 0.00 0.00 0.00 4.42
79 80 0.999406 CCAGGTGTGAGAAATACGCG 59.001 55.000 3.53 3.53 0.00 6.01
80 81 1.403647 CCAGGTGTGAGAAATACGCGA 60.404 52.381 15.93 0.00 0.00 5.87
81 82 1.920574 CAGGTGTGAGAAATACGCGAG 59.079 52.381 15.93 0.00 0.00 5.03
82 83 1.816835 AGGTGTGAGAAATACGCGAGA 59.183 47.619 15.93 0.00 0.00 4.04
83 84 2.427453 AGGTGTGAGAAATACGCGAGAT 59.573 45.455 15.93 2.02 0.00 2.75
84 85 3.119101 AGGTGTGAGAAATACGCGAGATT 60.119 43.478 15.93 9.34 0.00 2.40
85 86 3.243177 GGTGTGAGAAATACGCGAGATTC 59.757 47.826 15.93 13.52 0.00 2.52
86 87 4.106197 GTGTGAGAAATACGCGAGATTCT 58.894 43.478 15.93 18.20 35.79 2.40
87 88 4.205385 GTGTGAGAAATACGCGAGATTCTC 59.795 45.833 28.46 28.46 42.86 2.87
88 89 4.142469 TGTGAGAAATACGCGAGATTCTCA 60.142 41.667 31.25 31.25 46.01 3.27
89 90 4.993905 TGAGAAATACGCGAGATTCTCAA 58.006 39.130 32.02 22.72 45.65 3.02
90 91 5.407502 TGAGAAATACGCGAGATTCTCAAA 58.592 37.500 32.02 20.52 45.65 2.69
91 92 5.288712 TGAGAAATACGCGAGATTCTCAAAC 59.711 40.000 32.02 18.69 45.65 2.93
92 93 5.168569 AGAAATACGCGAGATTCTCAAACA 58.831 37.500 15.93 0.00 30.59 2.83
93 94 5.289675 AGAAATACGCGAGATTCTCAAACAG 59.710 40.000 15.93 2.69 30.59 3.16
94 95 1.714794 ACGCGAGATTCTCAAACAGG 58.285 50.000 15.93 0.00 0.00 4.00
95 96 1.272490 ACGCGAGATTCTCAAACAGGA 59.728 47.619 15.93 0.00 0.00 3.86
96 97 1.923204 CGCGAGATTCTCAAACAGGAG 59.077 52.381 13.88 0.00 36.21 3.69
97 98 2.416027 CGCGAGATTCTCAAACAGGAGA 60.416 50.000 13.88 0.00 41.99 3.71
98 99 2.926838 GCGAGATTCTCAAACAGGAGAC 59.073 50.000 13.88 0.00 43.31 3.36
99 100 3.516615 CGAGATTCTCAAACAGGAGACC 58.483 50.000 13.88 0.00 43.31 3.85
100 101 3.056536 CGAGATTCTCAAACAGGAGACCA 60.057 47.826 13.88 0.00 43.31 4.02
101 102 4.561530 CGAGATTCTCAAACAGGAGACCAA 60.562 45.833 13.88 0.00 43.31 3.67
102 103 5.308825 GAGATTCTCAAACAGGAGACCAAA 58.691 41.667 8.84 0.00 43.31 3.28
103 104 5.885465 AGATTCTCAAACAGGAGACCAAAT 58.115 37.500 0.00 0.00 43.31 2.32
104 105 6.310149 AGATTCTCAAACAGGAGACCAAATT 58.690 36.000 0.00 0.00 43.31 1.82
105 106 5.772825 TTCTCAAACAGGAGACCAAATTG 57.227 39.130 0.00 0.00 43.31 2.32
106 107 4.144297 TCTCAAACAGGAGACCAAATTGG 58.856 43.478 11.02 11.02 38.95 3.16
107 108 2.627699 TCAAACAGGAGACCAAATTGGC 59.372 45.455 12.67 5.14 42.67 4.52
108 109 2.629617 CAAACAGGAGACCAAATTGGCT 59.370 45.455 12.67 10.17 42.67 4.75
109 110 1.915141 ACAGGAGACCAAATTGGCTG 58.085 50.000 12.67 13.13 42.67 4.85
110 111 1.180029 CAGGAGACCAAATTGGCTGG 58.820 55.000 12.67 0.00 42.67 4.85
117 118 3.168035 ACCAAATTGGCTGGTACATCA 57.832 42.857 12.67 0.00 45.58 3.07
118 119 3.091545 ACCAAATTGGCTGGTACATCAG 58.908 45.455 12.67 0.00 45.58 2.90
119 120 2.428171 CCAAATTGGCTGGTACATCAGG 59.572 50.000 0.00 0.00 38.20 3.86
120 121 3.355378 CAAATTGGCTGGTACATCAGGA 58.645 45.455 0.00 0.00 38.20 3.86
121 122 3.956199 CAAATTGGCTGGTACATCAGGAT 59.044 43.478 0.00 0.00 38.20 3.24
122 123 5.132502 CAAATTGGCTGGTACATCAGGATA 58.867 41.667 0.00 0.00 38.20 2.59
123 124 3.838244 TTGGCTGGTACATCAGGATAC 57.162 47.619 0.00 0.00 38.20 2.24
124 125 1.686587 TGGCTGGTACATCAGGATACG 59.313 52.381 0.00 0.00 39.64 3.06
125 126 1.000955 GGCTGGTACATCAGGATACGG 59.999 57.143 0.00 0.00 39.64 4.02
126 127 1.000955 GCTGGTACATCAGGATACGGG 59.999 57.143 0.00 0.00 39.64 5.28
127 128 1.618837 CTGGTACATCAGGATACGGGG 59.381 57.143 0.00 0.00 39.64 5.73
128 129 1.062734 TGGTACATCAGGATACGGGGT 60.063 52.381 0.00 0.00 46.39 4.95
129 130 1.343465 GGTACATCAGGATACGGGGTG 59.657 57.143 0.00 0.00 46.39 4.61
130 131 2.313317 GTACATCAGGATACGGGGTGA 58.687 52.381 0.00 0.00 46.39 4.02
131 132 1.414158 ACATCAGGATACGGGGTGAG 58.586 55.000 0.00 0.00 46.39 3.51
132 133 0.681733 CATCAGGATACGGGGTGAGG 59.318 60.000 0.00 0.00 46.39 3.86
133 134 0.264955 ATCAGGATACGGGGTGAGGT 59.735 55.000 0.00 0.00 46.39 3.85
134 135 0.928505 TCAGGATACGGGGTGAGGTA 59.071 55.000 0.00 0.00 46.39 3.08
135 136 1.133575 TCAGGATACGGGGTGAGGTAG 60.134 57.143 0.00 0.00 46.39 3.18
136 137 0.469518 AGGATACGGGGTGAGGTAGC 60.470 60.000 0.00 0.00 46.39 3.58
137 138 0.469518 GGATACGGGGTGAGGTAGCT 60.470 60.000 0.00 0.00 0.00 3.32
138 139 0.674534 GATACGGGGTGAGGTAGCTG 59.325 60.000 0.00 0.00 0.00 4.24
139 140 1.400530 ATACGGGGTGAGGTAGCTGC 61.401 60.000 0.00 0.00 0.00 5.25
140 141 4.514577 CGGGGTGAGGTAGCTGCG 62.515 72.222 0.00 0.00 0.00 5.18
141 142 4.840005 GGGGTGAGGTAGCTGCGC 62.840 72.222 0.00 0.00 0.00 6.09
142 143 4.840005 GGGTGAGGTAGCTGCGCC 62.840 72.222 4.18 7.26 0.00 6.53
143 144 3.775654 GGTGAGGTAGCTGCGCCT 61.776 66.667 16.46 16.46 37.91 5.52
144 145 2.423898 GGTGAGGTAGCTGCGCCTA 61.424 63.158 16.48 0.00 34.81 3.93
145 146 1.515954 GTGAGGTAGCTGCGCCTAA 59.484 57.895 16.48 8.65 34.81 2.69
146 147 0.105039 GTGAGGTAGCTGCGCCTAAT 59.895 55.000 16.48 0.00 34.81 1.73
147 148 0.830648 TGAGGTAGCTGCGCCTAATT 59.169 50.000 16.48 0.00 34.81 1.40
148 149 1.221414 GAGGTAGCTGCGCCTAATTG 58.779 55.000 16.48 0.00 34.81 2.32
149 150 0.179045 AGGTAGCTGCGCCTAATTGG 60.179 55.000 15.28 0.00 39.35 3.16
159 160 2.737503 CCTAATTGGCTGGATGGGC 58.262 57.895 0.00 0.00 0.00 5.36
160 161 0.106066 CCTAATTGGCTGGATGGGCA 60.106 55.000 0.00 0.00 39.99 5.36
161 162 1.035139 CTAATTGGCTGGATGGGCAC 58.965 55.000 0.00 0.00 41.40 5.01
162 163 0.751277 TAATTGGCTGGATGGGCACG 60.751 55.000 0.00 0.00 41.40 5.34
163 164 2.497792 AATTGGCTGGATGGGCACGA 62.498 55.000 0.00 0.00 41.40 4.35
164 165 2.898920 ATTGGCTGGATGGGCACGAG 62.899 60.000 0.00 0.00 41.40 4.18
175 176 3.562635 GCACGAGCGCCTTTAGTT 58.437 55.556 2.29 0.00 0.00 2.24
176 177 2.745728 GCACGAGCGCCTTTAGTTA 58.254 52.632 2.29 0.00 0.00 2.24
177 178 0.645868 GCACGAGCGCCTTTAGTTAG 59.354 55.000 2.29 0.00 0.00 2.34
178 179 1.734707 GCACGAGCGCCTTTAGTTAGA 60.735 52.381 2.29 0.00 0.00 2.10
179 180 2.602878 CACGAGCGCCTTTAGTTAGAA 58.397 47.619 2.29 0.00 0.00 2.10
180 181 2.991190 CACGAGCGCCTTTAGTTAGAAA 59.009 45.455 2.29 0.00 0.00 2.52
181 182 3.060895 CACGAGCGCCTTTAGTTAGAAAG 59.939 47.826 2.29 0.00 36.38 2.62
190 191 5.781452 CTTTAGTTAGAAAGGACTTCGGC 57.219 43.478 0.00 0.00 39.22 5.54
191 192 5.479124 TTTAGTTAGAAAGGACTTCGGCT 57.521 39.130 0.00 0.00 39.22 5.52
192 193 5.479124 TTAGTTAGAAAGGACTTCGGCTT 57.521 39.130 0.00 0.00 39.22 4.35
193 194 4.353383 AGTTAGAAAGGACTTCGGCTTT 57.647 40.909 0.00 0.00 39.22 3.51
194 195 4.065789 AGTTAGAAAGGACTTCGGCTTTG 58.934 43.478 0.00 0.00 39.22 2.77
195 196 2.640316 AGAAAGGACTTCGGCTTTGT 57.360 45.000 0.00 0.00 39.22 2.83
196 197 3.764237 AGAAAGGACTTCGGCTTTGTA 57.236 42.857 0.00 0.00 39.22 2.41
197 198 3.400255 AGAAAGGACTTCGGCTTTGTAC 58.600 45.455 0.00 0.00 39.22 2.90
198 199 2.180432 AAGGACTTCGGCTTTGTACC 57.820 50.000 0.00 0.00 0.00 3.34
199 200 1.053424 AGGACTTCGGCTTTGTACCA 58.947 50.000 0.00 0.00 0.00 3.25
200 201 1.002087 AGGACTTCGGCTTTGTACCAG 59.998 52.381 0.00 0.00 0.00 4.00
201 202 0.796927 GACTTCGGCTTTGTACCAGC 59.203 55.000 5.72 5.72 36.45 4.85
206 207 4.371975 GCTTTGTACCAGCCGTCA 57.628 55.556 3.23 0.00 0.00 4.35
207 208 2.854522 GCTTTGTACCAGCCGTCAT 58.145 52.632 3.23 0.00 0.00 3.06
208 209 1.165270 GCTTTGTACCAGCCGTCATT 58.835 50.000 3.23 0.00 0.00 2.57
209 210 1.539827 GCTTTGTACCAGCCGTCATTT 59.460 47.619 3.23 0.00 0.00 2.32
210 211 2.030274 GCTTTGTACCAGCCGTCATTTT 60.030 45.455 3.23 0.00 0.00 1.82
211 212 3.552068 GCTTTGTACCAGCCGTCATTTTT 60.552 43.478 3.23 0.00 0.00 1.94
212 213 3.907894 TTGTACCAGCCGTCATTTTTC 57.092 42.857 0.00 0.00 0.00 2.29
213 214 3.134574 TGTACCAGCCGTCATTTTTCT 57.865 42.857 0.00 0.00 0.00 2.52
214 215 3.482436 TGTACCAGCCGTCATTTTTCTT 58.518 40.909 0.00 0.00 0.00 2.52
215 216 3.886505 TGTACCAGCCGTCATTTTTCTTT 59.113 39.130 0.00 0.00 0.00 2.52
216 217 3.643159 ACCAGCCGTCATTTTTCTTTC 57.357 42.857 0.00 0.00 0.00 2.62
217 218 3.222603 ACCAGCCGTCATTTTTCTTTCT 58.777 40.909 0.00 0.00 0.00 2.52
218 219 3.636764 ACCAGCCGTCATTTTTCTTTCTT 59.363 39.130 0.00 0.00 0.00 2.52
219 220 4.099419 ACCAGCCGTCATTTTTCTTTCTTT 59.901 37.500 0.00 0.00 0.00 2.52
220 221 5.300792 ACCAGCCGTCATTTTTCTTTCTTTA 59.699 36.000 0.00 0.00 0.00 1.85
221 222 5.629435 CCAGCCGTCATTTTTCTTTCTTTAC 59.371 40.000 0.00 0.00 0.00 2.01
222 223 6.438763 CAGCCGTCATTTTTCTTTCTTTACT 58.561 36.000 0.00 0.00 0.00 2.24
223 224 6.918022 CAGCCGTCATTTTTCTTTCTTTACTT 59.082 34.615 0.00 0.00 0.00 2.24
224 225 7.435192 CAGCCGTCATTTTTCTTTCTTTACTTT 59.565 33.333 0.00 0.00 0.00 2.66
225 226 7.979537 AGCCGTCATTTTTCTTTCTTTACTTTT 59.020 29.630 0.00 0.00 0.00 2.27
226 227 8.600625 GCCGTCATTTTTCTTTCTTTACTTTTT 58.399 29.630 0.00 0.00 0.00 1.94
289 290 9.836864 ATGTAGACATATTAGCAAAGTTGATGA 57.163 29.630 0.00 0.00 34.26 2.92
290 291 9.317936 TGTAGACATATTAGCAAAGTTGATGAG 57.682 33.333 0.00 0.00 0.00 2.90
291 292 9.534565 GTAGACATATTAGCAAAGTTGATGAGA 57.465 33.333 0.00 0.00 0.00 3.27
293 294 9.107177 AGACATATTAGCAAAGTTGATGAGAAG 57.893 33.333 0.00 0.00 0.00 2.85
294 295 8.798859 ACATATTAGCAAAGTTGATGAGAAGT 57.201 30.769 0.00 0.00 0.00 3.01
295 296 9.890629 ACATATTAGCAAAGTTGATGAGAAGTA 57.109 29.630 0.00 0.00 0.00 2.24
297 298 9.890629 ATATTAGCAAAGTTGATGAGAAGTACA 57.109 29.630 0.00 0.00 0.00 2.90
298 299 8.621532 ATTAGCAAAGTTGATGAGAAGTACAA 57.378 30.769 0.00 0.00 0.00 2.41
299 300 6.942532 AGCAAAGTTGATGAGAAGTACAAA 57.057 33.333 0.00 0.00 0.00 2.83
300 301 7.516198 AGCAAAGTTGATGAGAAGTACAAAT 57.484 32.000 0.00 0.00 0.00 2.32
301 302 8.621532 AGCAAAGTTGATGAGAAGTACAAATA 57.378 30.769 0.00 0.00 0.00 1.40
302 303 9.066892 AGCAAAGTTGATGAGAAGTACAAATAA 57.933 29.630 0.00 0.00 0.00 1.40
303 304 9.677567 GCAAAGTTGATGAGAAGTACAAATAAA 57.322 29.630 0.00 0.00 0.00 1.40
306 307 9.574516 AAGTTGATGAGAAGTACAAATAAACCT 57.425 29.630 0.00 0.00 0.00 3.50
307 308 9.220767 AGTTGATGAGAAGTACAAATAAACCTC 57.779 33.333 0.00 0.00 0.00 3.85
308 309 8.999431 GTTGATGAGAAGTACAAATAAACCTCA 58.001 33.333 0.00 0.00 34.48 3.86
309 310 9.567776 TTGATGAGAAGTACAAATAAACCTCAA 57.432 29.630 0.00 0.00 33.81 3.02
310 311 9.567776 TGATGAGAAGTACAAATAAACCTCAAA 57.432 29.630 0.00 0.00 33.81 2.69
311 312 9.827411 GATGAGAAGTACAAATAAACCTCAAAC 57.173 33.333 0.00 0.00 33.81 2.93
312 313 8.740123 TGAGAAGTACAAATAAACCTCAAACA 57.260 30.769 0.00 0.00 0.00 2.83
313 314 9.349713 TGAGAAGTACAAATAAACCTCAAACAT 57.650 29.630 0.00 0.00 0.00 2.71
351 352 3.761897 TCGAGATTCCAAAACCACCAAT 58.238 40.909 0.00 0.00 0.00 3.16
389 392 7.668525 TTTAGCTAGTTCTAAGACTTTTGGC 57.331 36.000 0.00 0.00 31.01 4.52
390 393 5.228945 AGCTAGTTCTAAGACTTTTGGCA 57.771 39.130 0.00 0.00 0.00 4.92
397 400 5.856126 TCTAAGACTTTTGGCATTGTACG 57.144 39.130 0.00 0.00 0.00 3.67
399 402 6.457355 TCTAAGACTTTTGGCATTGTACGTA 58.543 36.000 0.00 0.00 0.00 3.57
401 404 6.569179 AAGACTTTTGGCATTGTACGTAAT 57.431 33.333 0.00 0.00 0.00 1.89
528 539 7.286316 CCTTTTTCACTTGGGCTATCTCATATT 59.714 37.037 0.00 0.00 0.00 1.28
533 544 4.105377 ACTTGGGCTATCTCATATTTGGCT 59.895 41.667 0.00 0.00 0.00 4.75
554 565 9.952030 TTGGCTGAAATATAAATGGATATCGTA 57.048 29.630 0.00 0.00 0.00 3.43
562 573 9.944376 AATATAAATGGATATCGTAGTTGCACT 57.056 29.630 0.00 0.00 0.00 4.40
581 850 5.046591 TGCACTGTACCAGATATTATAGGCC 60.047 44.000 0.00 0.00 35.18 5.19
582 851 5.651530 CACTGTACCAGATATTATAGGCCG 58.348 45.833 0.00 0.00 35.18 6.13
584 853 6.014647 ACTGTACCAGATATTATAGGCCGAA 58.985 40.000 0.00 0.00 35.18 4.30
586 855 7.180408 ACTGTACCAGATATTATAGGCCGAAAT 59.820 37.037 0.00 0.95 35.18 2.17
587 856 8.598202 TGTACCAGATATTATAGGCCGAAATA 57.402 34.615 0.00 3.45 0.00 1.40
603 872 9.784531 AGGCCGAAATATAAATGGATATCATAG 57.215 33.333 4.83 0.00 34.44 2.23
604 873 9.561069 GGCCGAAATATAAATGGATATCATAGT 57.439 33.333 4.83 0.00 34.44 2.12
617 886 5.279708 GGATATCATAGTTGGACCTGTGAGG 60.280 48.000 4.83 0.00 42.49 3.86
635 905 1.420138 AGGGATATTTGCGGGTAGGTG 59.580 52.381 0.00 0.00 0.00 4.00
793 1063 3.668641 GCTAGCTAGCTCGATCGTC 57.331 57.895 33.71 8.44 45.62 4.20
794 1064 0.179235 GCTAGCTAGCTCGATCGTCG 60.179 60.000 33.71 8.81 45.62 5.12
795 1065 0.440758 CTAGCTAGCTCGATCGTCGG 59.559 60.000 23.26 7.95 40.88 4.79
796 1066 1.566882 TAGCTAGCTCGATCGTCGGC 61.567 60.000 23.26 16.88 40.88 5.54
928 1223 2.301296 CACACACACCTCATCTTCTCCT 59.699 50.000 0.00 0.00 0.00 3.69
935 1235 2.024846 ACCTCATCTTCTCCTCCTTCGA 60.025 50.000 0.00 0.00 0.00 3.71
936 1236 2.360801 CCTCATCTTCTCCTCCTTCGAC 59.639 54.545 0.00 0.00 0.00 4.20
946 1246 1.611519 CTCCTTCGACCCCTAGCTAG 58.388 60.000 14.20 14.20 0.00 3.42
982 1294 0.321564 AACCATCGCAAGCTAGCACA 60.322 50.000 18.83 0.00 37.18 4.57
983 1295 1.021390 ACCATCGCAAGCTAGCACAC 61.021 55.000 18.83 4.07 37.18 3.82
984 1296 1.346197 CATCGCAAGCTAGCACACG 59.654 57.895 18.83 16.42 37.18 4.49
985 1297 1.079819 ATCGCAAGCTAGCACACGT 60.080 52.632 18.83 5.24 37.18 4.49
986 1298 0.172578 ATCGCAAGCTAGCACACGTA 59.827 50.000 18.83 7.52 37.18 3.57
987 1299 0.731514 TCGCAAGCTAGCACACGTAC 60.732 55.000 18.83 0.00 37.18 3.67
988 1300 1.683790 CGCAAGCTAGCACACGTACC 61.684 60.000 18.83 0.00 0.00 3.34
989 1301 0.669318 GCAAGCTAGCACACGTACCA 60.669 55.000 18.83 0.00 0.00 3.25
990 1302 1.350193 CAAGCTAGCACACGTACCAG 58.650 55.000 18.83 0.00 0.00 4.00
991 1303 0.389948 AAGCTAGCACACGTACCAGC 60.390 55.000 18.83 0.00 0.00 4.85
992 1304 1.215647 GCTAGCACACGTACCAGCT 59.784 57.895 10.63 8.04 40.92 4.24
993 1305 0.454600 GCTAGCACACGTACCAGCTA 59.545 55.000 10.63 9.20 38.47 3.32
1074 1421 3.777925 CGGCCGAAGCTTGTCACG 61.778 66.667 24.07 0.00 39.73 4.35
1090 1437 3.449227 CGGAGCGCCTGACCACTA 61.449 66.667 2.29 0.00 0.00 2.74
1094 1441 1.033574 GAGCGCCTGACCACTACTAT 58.966 55.000 2.29 0.00 0.00 2.12
1124 1474 4.899239 GTCGCTGCAGCCGGCTAT 62.899 66.667 32.30 5.14 45.15 2.97
1160 1510 2.742710 CTTGCTGGGACGACGACGAA 62.743 60.000 15.32 0.00 42.66 3.85
1200 1550 0.917533 ACCTCCTCATCAAGCTGCAT 59.082 50.000 1.02 0.00 0.00 3.96
1229 1579 1.678101 CGGAAACCGGTACCTACCTAG 59.322 57.143 22.58 7.58 44.15 3.02
1238 1588 2.747799 GGTACCTACCTAGCTACGTGCT 60.748 54.545 15.13 15.13 45.10 4.40
1240 1590 6.275738 GGTACCTACCTAGCTACGTGCTTG 62.276 54.167 15.81 13.74 45.73 4.01
1252 1606 1.794701 ACGTGCTTGCGATGCATATAG 59.205 47.619 0.00 0.00 42.69 1.31
1264 1618 2.853731 GCATATAGCGATCCGTAGCT 57.146 50.000 0.00 0.00 46.53 3.32
1443 1800 0.528466 CGACAGCCATCGTGTGCTAT 60.528 55.000 0.00 0.00 37.33 2.97
1498 1864 2.270205 CGAGCATCTGCCAAGGGT 59.730 61.111 0.00 0.00 43.38 4.34
1499 1865 1.522092 CGAGCATCTGCCAAGGGTA 59.478 57.895 0.00 0.00 43.38 3.69
1500 1866 0.107703 CGAGCATCTGCCAAGGGTAA 60.108 55.000 0.00 0.00 43.38 2.85
1502 1868 2.659428 GAGCATCTGCCAAGGGTAATT 58.341 47.619 0.00 0.00 43.38 1.40
1508 1874 4.059773 TCTGCCAAGGGTAATTCCAAAT 57.940 40.909 0.00 0.00 38.11 2.32
1509 1875 3.768757 TCTGCCAAGGGTAATTCCAAATG 59.231 43.478 0.00 0.00 38.11 2.32
1514 1880 5.723295 CCAAGGGTAATTCCAAATGAAGTG 58.277 41.667 0.00 0.00 36.14 3.16
1518 1884 2.368655 AATTCCAAATGAAGTGCGCC 57.631 45.000 4.18 0.00 36.14 6.53
1519 1885 0.171007 ATTCCAAATGAAGTGCGCCG 59.829 50.000 4.18 0.00 36.14 6.46
1520 1886 1.861542 TTCCAAATGAAGTGCGCCGG 61.862 55.000 4.18 0.00 0.00 6.13
1545 1911 3.009714 GGGGCCGTCCTTCCTTCT 61.010 66.667 0.00 0.00 35.33 2.85
1546 1912 2.585153 GGGCCGTCCTTCCTTCTC 59.415 66.667 0.00 0.00 0.00 2.87
1549 1915 1.677552 GCCGTCCTTCCTTCTCCAA 59.322 57.895 0.00 0.00 0.00 3.53
1550 1916 0.673956 GCCGTCCTTCCTTCTCCAAC 60.674 60.000 0.00 0.00 0.00 3.77
1552 1918 0.601558 CGTCCTTCCTTCTCCAACGA 59.398 55.000 0.00 0.00 0.00 3.85
1553 1919 1.669211 CGTCCTTCCTTCTCCAACGAC 60.669 57.143 0.00 0.00 0.00 4.34
1555 1921 0.389948 CCTTCCTTCTCCAACGACGG 60.390 60.000 0.00 0.00 0.00 4.79
1556 1922 0.601558 CTTCCTTCTCCAACGACGGA 59.398 55.000 0.00 0.00 30.37 4.69
1557 1923 0.316204 TTCCTTCTCCAACGACGGAC 59.684 55.000 0.00 0.00 31.83 4.79
1558 1924 0.538977 TCCTTCTCCAACGACGGACT 60.539 55.000 0.00 0.00 0.00 3.85
1559 1925 0.109226 CCTTCTCCAACGACGGACTC 60.109 60.000 0.00 0.00 0.00 3.36
1568 1949 2.479650 GACGGACTCGACGACTGG 59.520 66.667 0.52 0.00 40.11 4.00
1574 1955 1.078759 GACTCGACGACTGGGCATTG 61.079 60.000 0.00 0.00 0.00 2.82
1602 1986 4.385405 ACAGCAGGTGCCTCGCTC 62.385 66.667 0.00 0.00 43.38 5.03
1605 1989 3.123620 GCAGGTGCCTCGCTCAAG 61.124 66.667 0.00 0.00 34.31 3.02
1621 2005 1.345741 TCAAGTGAACCTGGAGCTCAG 59.654 52.381 17.19 10.81 43.00 3.35
1630 2014 1.481055 CCTGGAGCTCAGCCTCTCTAT 60.481 57.143 17.19 0.00 42.05 1.98
1641 2025 1.032794 CCTCTCTATGCCGTGCAGTA 58.967 55.000 4.90 0.00 43.65 2.74
1663 2047 5.494390 ACGTCTACTTAATTTGGAGGGTT 57.506 39.130 0.00 0.00 0.00 4.11
1678 2085 2.882761 GAGGGTTTCACCTGGTGTTTAC 59.117 50.000 25.15 19.41 42.10 2.01
1689 2103 4.202388 ACCTGGTGTTTACATACTTCGGTT 60.202 41.667 0.00 0.00 0.00 4.44
1695 2109 4.393680 TGTTTACATACTTCGGTTGATGGC 59.606 41.667 0.00 0.00 0.00 4.40
1708 2122 3.431766 GGTTGATGGCTTCTGTACCGTAT 60.432 47.826 1.86 0.00 0.00 3.06
1709 2123 4.202182 GGTTGATGGCTTCTGTACCGTATA 60.202 45.833 1.86 0.00 0.00 1.47
1713 2127 5.361571 TGATGGCTTCTGTACCGTATAAGAA 59.638 40.000 1.86 6.52 0.00 2.52
1715 2129 5.413499 TGGCTTCTGTACCGTATAAGAAAC 58.587 41.667 7.62 4.51 0.00 2.78
1716 2130 5.047164 TGGCTTCTGTACCGTATAAGAAACA 60.047 40.000 7.62 7.15 0.00 2.83
1717 2131 5.519206 GGCTTCTGTACCGTATAAGAAACAG 59.481 44.000 11.45 11.45 36.52 3.16
1718 2132 6.098017 GCTTCTGTACCGTATAAGAAACAGT 58.902 40.000 14.91 0.00 36.56 3.55
1719 2133 6.253083 GCTTCTGTACCGTATAAGAAACAGTC 59.747 42.308 14.91 6.98 36.56 3.51
1720 2134 6.199937 TCTGTACCGTATAAGAAACAGTCC 57.800 41.667 14.91 0.00 36.56 3.85
1722 2136 7.112122 TCTGTACCGTATAAGAAACAGTCCTA 58.888 38.462 14.91 0.87 36.56 2.94
1723 2137 7.066284 TCTGTACCGTATAAGAAACAGTCCTAC 59.934 40.741 14.91 0.00 36.56 3.18
1725 2139 6.448207 ACCGTATAAGAAACAGTCCTACTC 57.552 41.667 0.00 0.00 0.00 2.59
1726 2140 5.359292 ACCGTATAAGAAACAGTCCTACTCC 59.641 44.000 0.00 0.00 0.00 3.85
1727 2141 5.221204 CCGTATAAGAAACAGTCCTACTCCC 60.221 48.000 0.00 0.00 0.00 4.30
1728 2142 5.593502 CGTATAAGAAACAGTCCTACTCCCT 59.406 44.000 0.00 0.00 0.00 4.20
1729 2143 6.238703 CGTATAAGAAACAGTCCTACTCCCTC 60.239 46.154 0.00 0.00 0.00 4.30
1730 2144 3.544698 AGAAACAGTCCTACTCCCTCA 57.455 47.619 0.00 0.00 0.00 3.86
1731 2145 3.436243 AGAAACAGTCCTACTCCCTCAG 58.564 50.000 0.00 0.00 0.00 3.35
1732 2146 3.166679 GAAACAGTCCTACTCCCTCAGT 58.833 50.000 0.00 0.00 39.41 3.41
1733 2147 2.517998 ACAGTCCTACTCCCTCAGTC 57.482 55.000 0.00 0.00 36.43 3.51
1734 2148 1.006162 ACAGTCCTACTCCCTCAGTCC 59.994 57.143 0.00 0.00 36.43 3.85
1735 2149 0.256464 AGTCCTACTCCCTCAGTCCG 59.744 60.000 0.00 0.00 36.43 4.79
1736 2150 0.255318 GTCCTACTCCCTCAGTCCGA 59.745 60.000 0.00 0.00 36.43 4.55
1737 2151 0.997363 TCCTACTCCCTCAGTCCGAA 59.003 55.000 0.00 0.00 36.43 4.30
1738 2152 1.356738 TCCTACTCCCTCAGTCCGAAA 59.643 52.381 0.00 0.00 36.43 3.46
1739 2153 2.176889 CCTACTCCCTCAGTCCGAAAA 58.823 52.381 0.00 0.00 36.43 2.29
1740 2154 2.565834 CCTACTCCCTCAGTCCGAAAAA 59.434 50.000 0.00 0.00 36.43 1.94
1741 2155 2.841442 ACTCCCTCAGTCCGAAAAAG 57.159 50.000 0.00 0.00 0.00 2.27
1742 2156 1.270893 ACTCCCTCAGTCCGAAAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
1743 2157 1.002544 CTCCCTCAGTCCGAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
1744 2158 1.420138 TCCCTCAGTCCGAAAAAGCTT 59.580 47.619 0.00 0.00 0.00 3.74
1745 2159 1.537202 CCCTCAGTCCGAAAAAGCTTG 59.463 52.381 0.00 0.00 0.00 4.01
1746 2160 2.222027 CCTCAGTCCGAAAAAGCTTGT 58.778 47.619 0.00 0.00 0.00 3.16
1747 2161 2.224314 CCTCAGTCCGAAAAAGCTTGTC 59.776 50.000 0.00 0.00 0.00 3.18
1748 2162 2.218603 TCAGTCCGAAAAAGCTTGTCC 58.781 47.619 0.00 0.00 0.00 4.02
1749 2163 1.266989 CAGTCCGAAAAAGCTTGTCCC 59.733 52.381 0.00 0.00 0.00 4.46
1750 2164 1.143073 AGTCCGAAAAAGCTTGTCCCT 59.857 47.619 0.00 0.00 0.00 4.20
1751 2165 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
1752 2166 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
1753 2167 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
1754 2168 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
1755 2169 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
1756 2170 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
1757 2171 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
1758 2172 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
1759 2173 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
1760 2174 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
1761 2175 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
1762 2176 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
1763 2177 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
1764 2178 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
1765 2179 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
1766 2180 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
1767 2181 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
1768 2182 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
1769 2183 5.012561 GTCCCTCAAATGGATGTATCTAGCT 59.987 44.000 0.00 0.00 33.65 3.32
1770 2184 5.247110 TCCCTCAAATGGATGTATCTAGCTC 59.753 44.000 0.00 0.00 0.00 4.09
1771 2185 5.486526 CCTCAAATGGATGTATCTAGCTCC 58.513 45.833 0.00 0.00 0.00 4.70
1772 2186 5.012458 CCTCAAATGGATGTATCTAGCTCCA 59.988 44.000 0.00 0.00 41.76 3.86
1773 2187 6.464892 CCTCAAATGGATGTATCTAGCTCCAA 60.465 42.308 0.00 0.00 40.94 3.53
1774 2188 6.528321 TCAAATGGATGTATCTAGCTCCAAG 58.472 40.000 0.00 0.00 40.94 3.61
1775 2189 6.100279 TCAAATGGATGTATCTAGCTCCAAGT 59.900 38.462 0.00 0.00 40.94 3.16
1776 2190 6.506538 AATGGATGTATCTAGCTCCAAGTT 57.493 37.500 0.00 0.00 40.94 2.66
1777 2191 7.618019 AATGGATGTATCTAGCTCCAAGTTA 57.382 36.000 0.00 0.00 40.94 2.24
1784 2198 8.905660 TGTATCTAGCTCCAAGTTAGTACTAG 57.094 38.462 2.23 0.00 31.87 2.57
1788 2202 9.729281 ATCTAGCTCCAAGTTAGTACTAGATAC 57.271 37.037 2.23 0.00 41.70 2.24
1791 2205 8.398878 AGCTCCAAGTTAGTACTAGATACATC 57.601 38.462 2.23 0.00 36.09 3.06
1795 2209 9.656323 TCCAAGTTAGTACTAGATACATCCATT 57.344 33.333 2.23 0.00 36.09 3.16
1804 2218 7.931015 ACTAGATACATCCATTTAAGGGACA 57.069 36.000 0.00 0.00 37.23 4.02
1806 2220 8.432805 ACTAGATACATCCATTTAAGGGACAAG 58.567 37.037 0.00 0.00 37.23 3.16
1808 2222 7.643123 AGATACATCCATTTAAGGGACAAGTT 58.357 34.615 0.00 0.00 37.23 2.66
1809 2223 8.116026 AGATACATCCATTTAAGGGACAAGTTT 58.884 33.333 0.00 0.00 37.23 2.66
1810 2224 6.994421 ACATCCATTTAAGGGACAAGTTTT 57.006 33.333 0.00 0.00 37.23 2.43
1811 2225 7.373617 ACATCCATTTAAGGGACAAGTTTTT 57.626 32.000 0.00 0.00 37.23 1.94
1841 2255 7.002879 ACGGAGGAAGTACTATGTATGTATGT 58.997 38.462 0.00 0.00 0.00 2.29
1842 2256 7.040617 ACGGAGGAAGTACTATGTATGTATGTG 60.041 40.741 0.00 0.00 0.00 3.21
1843 2257 7.040617 CGGAGGAAGTACTATGTATGTATGTGT 60.041 40.741 0.00 0.00 0.00 3.72
1844 2258 9.293404 GGAGGAAGTACTATGTATGTATGTGTA 57.707 37.037 0.00 0.00 0.00 2.90
1846 2260 9.863650 AGGAAGTACTATGTATGTATGTGTACT 57.136 33.333 0.00 0.00 40.19 2.73
1847 2261 9.894783 GGAAGTACTATGTATGTATGTGTACTG 57.105 37.037 0.00 0.00 38.98 2.74
1853 2267 9.848710 ACTATGTATGTATGTGTACTGACTACT 57.151 33.333 0.00 0.00 0.00 2.57
1856 2270 9.848710 ATGTATGTATGTGTACTGACTACTACT 57.151 33.333 0.00 0.00 0.00 2.57
1857 2271 9.322773 TGTATGTATGTGTACTGACTACTACTC 57.677 37.037 0.00 0.00 0.00 2.59
1864 2280 6.206243 TGTGTACTGACTACTACTCCAAGTTC 59.794 42.308 0.00 0.00 0.00 3.01
1867 2283 4.696402 ACTGACTACTACTCCAAGTTCGAG 59.304 45.833 0.00 0.00 0.00 4.04
1872 2288 4.506886 ACTACTCCAAGTTCGAGTTGAG 57.493 45.455 16.32 8.48 40.93 3.02
1884 2300 2.045926 GTTGAGCCCATCACCGCT 60.046 61.111 0.00 0.00 37.77 5.52
1889 2305 1.686325 GAGCCCATCACCGCTCCTTA 61.686 60.000 0.00 0.00 44.70 2.69
1897 2313 4.442893 CCATCACCGCTCCTTAATTACTCA 60.443 45.833 0.00 0.00 0.00 3.41
1898 2314 4.386867 TCACCGCTCCTTAATTACTCAG 57.613 45.455 0.00 0.00 0.00 3.35
1899 2315 3.767673 TCACCGCTCCTTAATTACTCAGT 59.232 43.478 0.00 0.00 0.00 3.41
1900 2316 4.951715 TCACCGCTCCTTAATTACTCAGTA 59.048 41.667 0.00 0.00 0.00 2.74
1901 2317 5.597182 TCACCGCTCCTTAATTACTCAGTAT 59.403 40.000 0.00 0.00 0.00 2.12
1902 2318 6.774170 TCACCGCTCCTTAATTACTCAGTATA 59.226 38.462 0.00 0.00 0.00 1.47
1903 2319 7.450634 TCACCGCTCCTTAATTACTCAGTATAT 59.549 37.037 0.00 0.00 0.00 0.86
1904 2320 7.542477 CACCGCTCCTTAATTACTCAGTATATG 59.458 40.741 0.00 0.00 0.00 1.78
1905 2321 7.450634 ACCGCTCCTTAATTACTCAGTATATGA 59.549 37.037 0.00 0.00 36.21 2.15
1906 2322 8.304596 CCGCTCCTTAATTACTCAGTATATGAA 58.695 37.037 0.00 0.00 37.52 2.57
1907 2323 9.347934 CGCTCCTTAATTACTCAGTATATGAAG 57.652 37.037 0.00 0.00 37.52 3.02
1908 2324 9.145865 GCTCCTTAATTACTCAGTATATGAAGC 57.854 37.037 0.00 0.00 37.52 3.86
1911 2327 8.930760 CCTTAATTACTCAGTATATGAAGCAGC 58.069 37.037 0.00 0.00 37.52 5.25
1912 2328 9.703892 CTTAATTACTCAGTATATGAAGCAGCT 57.296 33.333 0.00 0.00 37.52 4.24
1914 2330 7.959689 ATTACTCAGTATATGAAGCAGCTTG 57.040 36.000 13.91 0.00 37.52 4.01
1915 2331 5.350504 ACTCAGTATATGAAGCAGCTTGT 57.649 39.130 13.91 3.49 37.52 3.16
1916 2332 6.471233 ACTCAGTATATGAAGCAGCTTGTA 57.529 37.500 13.91 5.84 37.52 2.41
1917 2333 7.060383 ACTCAGTATATGAAGCAGCTTGTAT 57.940 36.000 13.91 12.78 37.52 2.29
1918 2334 7.504403 ACTCAGTATATGAAGCAGCTTGTATT 58.496 34.615 13.91 0.00 37.52 1.89
1919 2335 7.440556 ACTCAGTATATGAAGCAGCTTGTATTG 59.559 37.037 13.91 7.29 37.52 1.90
1920 2336 7.275183 TCAGTATATGAAGCAGCTTGTATTGT 58.725 34.615 13.91 2.78 34.02 2.71
1921 2337 7.439356 TCAGTATATGAAGCAGCTTGTATTGTC 59.561 37.037 13.91 0.00 34.02 3.18
1922 2338 7.440556 CAGTATATGAAGCAGCTTGTATTGTCT 59.559 37.037 13.91 7.56 0.00 3.41
1923 2339 8.642432 AGTATATGAAGCAGCTTGTATTGTCTA 58.358 33.333 13.91 0.00 0.00 2.59
1924 2340 7.721286 ATATGAAGCAGCTTGTATTGTCTAC 57.279 36.000 13.91 0.00 0.00 2.59
1925 2341 4.893608 TGAAGCAGCTTGTATTGTCTACA 58.106 39.130 13.91 0.00 0.00 2.74
1926 2342 5.304778 TGAAGCAGCTTGTATTGTCTACAA 58.695 37.500 13.91 0.00 40.51 2.41
1942 2358 9.989296 ATTGTCTACAAGAGAGATATATAGGCT 57.011 33.333 1.62 0.00 39.47 4.58
1943 2359 9.456147 TTGTCTACAAGAGAGATATATAGGCTC 57.544 37.037 0.00 7.12 33.72 4.70
1984 2412 7.405292 TGTCCCTTCAAAAGTTCAGATATGAT 58.595 34.615 0.00 0.00 0.00 2.45
1989 2417 8.759641 CCTTCAAAAGTTCAGATATGATCTACG 58.240 37.037 1.47 0.00 37.58 3.51
1990 2418 9.307121 CTTCAAAAGTTCAGATATGATCTACGT 57.693 33.333 1.47 0.00 37.58 3.57
1991 2419 8.634475 TCAAAAGTTCAGATATGATCTACGTG 57.366 34.615 0.00 1.80 37.58 4.49
1992 2420 7.706607 TCAAAAGTTCAGATATGATCTACGTGG 59.293 37.037 0.00 0.00 37.58 4.94
1993 2421 5.127693 AGTTCAGATATGATCTACGTGGC 57.872 43.478 0.00 0.00 37.58 5.01
1994 2422 4.584743 AGTTCAGATATGATCTACGTGGCA 59.415 41.667 0.00 0.00 37.58 4.92
1995 2423 5.069119 AGTTCAGATATGATCTACGTGGCAA 59.931 40.000 0.00 0.00 37.58 4.52
1996 2424 5.529581 TCAGATATGATCTACGTGGCAAA 57.470 39.130 0.00 0.00 37.58 3.68
1997 2425 5.912892 TCAGATATGATCTACGTGGCAAAA 58.087 37.500 0.00 0.00 37.58 2.44
1998 2426 6.345298 TCAGATATGATCTACGTGGCAAAAA 58.655 36.000 0.00 0.00 37.58 1.94
1999 2427 6.257849 TCAGATATGATCTACGTGGCAAAAAC 59.742 38.462 0.00 0.00 37.58 2.43
2000 2428 6.258727 CAGATATGATCTACGTGGCAAAAACT 59.741 38.462 0.00 0.00 37.58 2.66
2001 2429 4.946784 ATGATCTACGTGGCAAAAACTC 57.053 40.909 0.00 0.00 0.00 3.01
2002 2430 3.734463 TGATCTACGTGGCAAAAACTCA 58.266 40.909 0.00 0.00 0.00 3.41
2003 2431 4.130857 TGATCTACGTGGCAAAAACTCAA 58.869 39.130 0.00 0.00 0.00 3.02
2004 2432 4.759693 TGATCTACGTGGCAAAAACTCAAT 59.240 37.500 0.00 0.00 0.00 2.57
2034 2462 7.389607 CCAATACTCCTACCCAATTTTATACCG 59.610 40.741 0.00 0.00 0.00 4.02
2036 2464 8.725606 ATACTCCTACCCAATTTTATACCGTA 57.274 34.615 0.00 0.00 0.00 4.02
2150 2578 9.783256 ATGACAATCATTCATTATATGCAATCG 57.217 29.630 0.00 0.00 32.13 3.34
2163 2591 4.852609 ATGCAATCGTACGAACTTTACC 57.147 40.909 23.56 7.39 0.00 2.85
2261 3006 5.666462 TGGCTATAATTAAAGCTCACGTGA 58.334 37.500 18.88 18.88 38.80 4.35
2276 3022 3.558006 TCACGTGACACAACCTTGTATTG 59.442 43.478 15.76 0.00 39.91 1.90
2307 3053 5.606348 AGTTCAGTCCCTGTCTCATTATC 57.394 43.478 0.00 0.00 32.61 1.75
2335 3081 8.891671 ATCGTAGGTTGTTTAGTTTTCTGTTA 57.108 30.769 0.00 0.00 0.00 2.41
2351 3097 5.152623 TCTGTTACTTCCTTGGTGATCTG 57.847 43.478 0.00 0.00 0.00 2.90
2413 3182 1.202428 CGAGCCTCCCTAAGTTAGTGC 60.202 57.143 9.05 6.11 0.00 4.40
2421 3190 4.964593 TCCCTAAGTTAGTGCGTTTTCTT 58.035 39.130 9.05 0.00 0.00 2.52
2423 3192 5.824097 TCCCTAAGTTAGTGCGTTTTCTTTT 59.176 36.000 9.05 0.00 0.00 2.27
2425 3194 6.416750 CCCTAAGTTAGTGCGTTTTCTTTTTG 59.583 38.462 9.05 0.00 0.00 2.44
2433 3202 6.720343 AGTGCGTTTTCTTTTTGTTTTGTTT 58.280 28.000 0.00 0.00 0.00 2.83
2545 3662 7.039152 TGGGAATTTTCACAGCTCAATGAATTA 60.039 33.333 5.62 0.00 35.26 1.40
2619 3739 5.402270 GTCTACGCAAACTTTTTGCATGATT 59.598 36.000 20.40 4.80 45.14 2.57
2625 3745 6.536688 GCAAACTTTTTGCATGATTATGGAC 58.463 36.000 16.79 0.00 44.34 4.02
2634 3754 4.875536 TGCATGATTATGGACGGTATATGC 59.124 41.667 0.00 0.00 38.95 3.14
2645 3765 1.858458 CGGTATATGCGTTGGACACAG 59.142 52.381 0.00 0.00 0.00 3.66
2647 3767 2.159014 GGTATATGCGTTGGACACAGGA 60.159 50.000 0.00 0.00 0.00 3.86
2648 3768 3.494398 GGTATATGCGTTGGACACAGGAT 60.494 47.826 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.066787 CATGGTGCATTCATGGTTGCA 60.067 47.619 19.22 16.37 46.03 4.08
2 3 1.647346 CATGGTGCATTCATGGTTGC 58.353 50.000 19.22 12.23 38.55 4.17
7 8 1.331399 TGGCCCATGGTGCATTCATG 61.331 55.000 21.92 19.74 41.04 3.07
8 9 0.399376 ATGGCCCATGGTGCATTCAT 60.399 50.000 21.92 14.84 0.00 2.57
9 10 1.001888 ATGGCCCATGGTGCATTCA 59.998 52.632 21.92 13.56 0.00 2.57
10 11 1.744014 GATGGCCCATGGTGCATTC 59.256 57.895 21.92 15.19 0.00 2.67
11 12 1.763256 GGATGGCCCATGGTGCATT 60.763 57.895 21.92 11.49 34.14 3.56
12 13 2.123164 GGATGGCCCATGGTGCAT 60.123 61.111 21.92 14.82 34.14 3.96
13 14 3.670319 TGGATGGCCCATGGTGCA 61.670 61.111 21.92 8.58 40.82 4.57
20 21 4.442403 CACACAAATGTATGGATGGCCCA 61.442 47.826 0.00 0.00 43.34 5.36
21 22 2.101249 CACACAAATGTATGGATGGCCC 59.899 50.000 0.00 0.00 36.72 5.80
22 23 3.023119 TCACACAAATGTATGGATGGCC 58.977 45.455 0.00 0.00 36.72 5.36
23 24 3.443329 TGTCACACAAATGTATGGATGGC 59.557 43.478 0.00 0.00 36.72 4.40
24 25 5.641783 TTGTCACACAAATGTATGGATGG 57.358 39.130 0.00 0.00 36.72 3.51
25 26 7.943413 TTTTTGTCACACAAATGTATGGATG 57.057 32.000 2.76 0.00 46.17 3.51
53 54 1.415672 TTCTCACACCTGGTCCCACC 61.416 60.000 0.00 0.00 39.22 4.61
54 55 0.472471 TTTCTCACACCTGGTCCCAC 59.528 55.000 0.00 0.00 0.00 4.61
55 56 1.444933 ATTTCTCACACCTGGTCCCA 58.555 50.000 0.00 0.00 0.00 4.37
56 57 2.677037 CGTATTTCTCACACCTGGTCCC 60.677 54.545 0.00 0.00 0.00 4.46
57 58 2.618053 CGTATTTCTCACACCTGGTCC 58.382 52.381 0.00 0.00 0.00 4.46
58 59 2.000447 GCGTATTTCTCACACCTGGTC 59.000 52.381 0.00 0.00 0.00 4.02
59 60 1.671850 CGCGTATTTCTCACACCTGGT 60.672 52.381 0.00 0.00 0.00 4.00
60 61 0.999406 CGCGTATTTCTCACACCTGG 59.001 55.000 0.00 0.00 0.00 4.45
61 62 1.920574 CTCGCGTATTTCTCACACCTG 59.079 52.381 5.77 0.00 0.00 4.00
62 63 1.816835 TCTCGCGTATTTCTCACACCT 59.183 47.619 5.77 0.00 0.00 4.00
63 64 2.273370 TCTCGCGTATTTCTCACACC 57.727 50.000 5.77 0.00 0.00 4.16
64 65 4.106197 AGAATCTCGCGTATTTCTCACAC 58.894 43.478 5.77 0.00 0.00 3.82
65 66 4.142469 TGAGAATCTCGCGTATTTCTCACA 60.142 41.667 28.84 17.79 45.45 3.58
66 67 4.352039 TGAGAATCTCGCGTATTTCTCAC 58.648 43.478 28.84 16.22 45.45 3.51
68 69 5.288712 TGTTTGAGAATCTCGCGTATTTCTC 59.711 40.000 25.98 25.98 42.74 2.87
69 70 5.168569 TGTTTGAGAATCTCGCGTATTTCT 58.831 37.500 16.06 16.06 34.92 2.52
70 71 5.450376 TGTTTGAGAATCTCGCGTATTTC 57.550 39.130 5.77 7.74 34.92 2.17
71 72 4.330074 CCTGTTTGAGAATCTCGCGTATTT 59.670 41.667 5.77 0.00 34.92 1.40
72 73 3.865745 CCTGTTTGAGAATCTCGCGTATT 59.134 43.478 5.77 7.63 34.92 1.89
73 74 3.130516 TCCTGTTTGAGAATCTCGCGTAT 59.869 43.478 5.77 0.00 34.92 3.06
74 75 2.490509 TCCTGTTTGAGAATCTCGCGTA 59.509 45.455 5.77 0.00 34.92 4.42
75 76 1.272490 TCCTGTTTGAGAATCTCGCGT 59.728 47.619 5.77 0.00 34.92 6.01
76 77 1.923204 CTCCTGTTTGAGAATCTCGCG 59.077 52.381 0.00 0.00 34.11 5.87
77 78 2.926838 GTCTCCTGTTTGAGAATCTCGC 59.073 50.000 5.73 0.00 42.75 5.03
78 79 3.056536 TGGTCTCCTGTTTGAGAATCTCG 60.057 47.826 5.73 0.00 42.75 4.04
79 80 4.543590 TGGTCTCCTGTTTGAGAATCTC 57.456 45.455 2.75 2.75 42.75 2.75
80 81 4.982241 TTGGTCTCCTGTTTGAGAATCT 57.018 40.909 0.00 0.00 42.75 2.40
81 82 6.385033 CAATTTGGTCTCCTGTTTGAGAATC 58.615 40.000 0.00 0.00 42.75 2.52
82 83 5.244626 CCAATTTGGTCTCCTGTTTGAGAAT 59.755 40.000 7.31 0.00 42.75 2.40
83 84 4.584325 CCAATTTGGTCTCCTGTTTGAGAA 59.416 41.667 7.31 0.00 42.75 2.87
84 85 4.144297 CCAATTTGGTCTCCTGTTTGAGA 58.856 43.478 7.31 0.00 39.04 3.27
85 86 3.305608 GCCAATTTGGTCTCCTGTTTGAG 60.306 47.826 16.62 0.00 40.46 3.02
86 87 2.627699 GCCAATTTGGTCTCCTGTTTGA 59.372 45.455 16.62 0.00 40.46 2.69
87 88 2.629617 AGCCAATTTGGTCTCCTGTTTG 59.370 45.455 16.62 0.00 40.46 2.93
88 89 2.629617 CAGCCAATTTGGTCTCCTGTTT 59.370 45.455 16.62 0.00 40.46 2.83
89 90 2.242043 CAGCCAATTTGGTCTCCTGTT 58.758 47.619 16.62 0.00 40.46 3.16
90 91 1.548582 CCAGCCAATTTGGTCTCCTGT 60.549 52.381 16.62 0.00 40.46 4.00
91 92 1.180029 CCAGCCAATTTGGTCTCCTG 58.820 55.000 16.62 13.80 40.46 3.86
92 93 0.779997 ACCAGCCAATTTGGTCTCCT 59.220 50.000 16.62 2.63 45.67 3.69
93 94 2.092323 GTACCAGCCAATTTGGTCTCC 58.908 52.381 16.62 0.25 45.67 3.71
94 95 2.790433 TGTACCAGCCAATTTGGTCTC 58.210 47.619 16.62 0.60 45.67 3.36
95 96 2.969821 TGTACCAGCCAATTTGGTCT 57.030 45.000 16.62 11.13 45.67 3.85
96 97 3.088532 TGATGTACCAGCCAATTTGGTC 58.911 45.455 16.62 9.13 45.67 4.02
98 99 2.428171 CCTGATGTACCAGCCAATTTGG 59.572 50.000 11.27 11.27 41.55 3.28
99 100 3.355378 TCCTGATGTACCAGCCAATTTG 58.645 45.455 0.00 0.00 32.97 2.32
100 101 3.737559 TCCTGATGTACCAGCCAATTT 57.262 42.857 0.00 0.00 32.97 1.82
101 102 3.959495 ATCCTGATGTACCAGCCAATT 57.041 42.857 0.00 0.00 32.97 2.32
102 103 3.244215 CGTATCCTGATGTACCAGCCAAT 60.244 47.826 0.00 0.00 32.97 3.16
103 104 2.102420 CGTATCCTGATGTACCAGCCAA 59.898 50.000 0.00 0.00 32.97 4.52
104 105 1.686587 CGTATCCTGATGTACCAGCCA 59.313 52.381 0.00 0.00 32.97 4.75
105 106 1.000955 CCGTATCCTGATGTACCAGCC 59.999 57.143 0.00 0.00 32.97 4.85
106 107 1.000955 CCCGTATCCTGATGTACCAGC 59.999 57.143 0.00 0.00 32.97 4.85
107 108 1.618837 CCCCGTATCCTGATGTACCAG 59.381 57.143 0.00 0.00 0.00 4.00
108 109 1.062734 ACCCCGTATCCTGATGTACCA 60.063 52.381 0.00 0.00 0.00 3.25
109 110 1.343465 CACCCCGTATCCTGATGTACC 59.657 57.143 0.00 0.00 0.00 3.34
110 111 2.296471 CTCACCCCGTATCCTGATGTAC 59.704 54.545 0.00 0.00 0.00 2.90
111 112 2.594131 CTCACCCCGTATCCTGATGTA 58.406 52.381 0.00 0.00 0.00 2.29
112 113 1.414158 CTCACCCCGTATCCTGATGT 58.586 55.000 0.00 0.00 0.00 3.06
113 114 0.681733 CCTCACCCCGTATCCTGATG 59.318 60.000 0.00 0.00 0.00 3.07
114 115 0.264955 ACCTCACCCCGTATCCTGAT 59.735 55.000 0.00 0.00 0.00 2.90
115 116 0.928505 TACCTCACCCCGTATCCTGA 59.071 55.000 0.00 0.00 0.00 3.86
116 117 1.329256 CTACCTCACCCCGTATCCTG 58.671 60.000 0.00 0.00 0.00 3.86
117 118 0.469518 GCTACCTCACCCCGTATCCT 60.470 60.000 0.00 0.00 0.00 3.24
118 119 0.469518 AGCTACCTCACCCCGTATCC 60.470 60.000 0.00 0.00 0.00 2.59
119 120 0.674534 CAGCTACCTCACCCCGTATC 59.325 60.000 0.00 0.00 0.00 2.24
120 121 1.400530 GCAGCTACCTCACCCCGTAT 61.401 60.000 0.00 0.00 0.00 3.06
121 122 2.056223 GCAGCTACCTCACCCCGTA 61.056 63.158 0.00 0.00 0.00 4.02
122 123 3.391382 GCAGCTACCTCACCCCGT 61.391 66.667 0.00 0.00 0.00 5.28
123 124 4.514577 CGCAGCTACCTCACCCCG 62.515 72.222 0.00 0.00 0.00 5.73
141 142 0.106066 TGCCCATCCAGCCAATTAGG 60.106 55.000 0.00 0.00 41.84 2.69
142 143 1.035139 GTGCCCATCCAGCCAATTAG 58.965 55.000 0.00 0.00 0.00 1.73
143 144 0.751277 CGTGCCCATCCAGCCAATTA 60.751 55.000 0.00 0.00 0.00 1.40
144 145 2.053865 CGTGCCCATCCAGCCAATT 61.054 57.895 0.00 0.00 0.00 2.32
145 146 2.440796 CGTGCCCATCCAGCCAAT 60.441 61.111 0.00 0.00 0.00 3.16
146 147 3.626996 CTCGTGCCCATCCAGCCAA 62.627 63.158 0.00 0.00 0.00 4.52
147 148 4.100084 CTCGTGCCCATCCAGCCA 62.100 66.667 0.00 0.00 0.00 4.75
158 159 0.645868 CTAACTAAAGGCGCTCGTGC 59.354 55.000 7.64 0.00 0.00 5.34
159 160 2.273370 TCTAACTAAAGGCGCTCGTG 57.727 50.000 7.64 0.00 0.00 4.35
160 161 3.251571 CTTTCTAACTAAAGGCGCTCGT 58.748 45.455 7.64 0.00 33.64 4.18
161 162 2.603560 CCTTTCTAACTAAAGGCGCTCG 59.396 50.000 7.64 0.00 46.66 5.03
168 169 5.480205 AGCCGAAGTCCTTTCTAACTAAAG 58.520 41.667 0.00 0.00 36.43 1.85
169 170 5.479124 AGCCGAAGTCCTTTCTAACTAAA 57.521 39.130 0.00 0.00 33.44 1.85
170 171 5.479124 AAGCCGAAGTCCTTTCTAACTAA 57.521 39.130 0.00 0.00 33.44 2.24
171 172 5.221581 ACAAAGCCGAAGTCCTTTCTAACTA 60.222 40.000 0.00 0.00 33.44 2.24
172 173 4.065789 CAAAGCCGAAGTCCTTTCTAACT 58.934 43.478 0.00 0.00 33.44 2.24
173 174 3.813724 ACAAAGCCGAAGTCCTTTCTAAC 59.186 43.478 0.00 0.00 33.44 2.34
174 175 4.081322 ACAAAGCCGAAGTCCTTTCTAA 57.919 40.909 0.00 0.00 33.44 2.10
175 176 3.764237 ACAAAGCCGAAGTCCTTTCTA 57.236 42.857 0.00 0.00 33.44 2.10
176 177 2.640316 ACAAAGCCGAAGTCCTTTCT 57.360 45.000 0.00 0.00 33.44 2.52
177 178 2.483106 GGTACAAAGCCGAAGTCCTTTC 59.517 50.000 0.00 0.00 0.00 2.62
178 179 2.158726 TGGTACAAAGCCGAAGTCCTTT 60.159 45.455 0.00 0.00 31.92 3.11
179 180 1.418637 TGGTACAAAGCCGAAGTCCTT 59.581 47.619 0.00 0.00 31.92 3.36
180 181 1.002087 CTGGTACAAAGCCGAAGTCCT 59.998 52.381 0.00 0.00 38.70 3.85
181 182 1.439679 CTGGTACAAAGCCGAAGTCC 58.560 55.000 0.00 0.00 38.70 3.85
182 183 0.796927 GCTGGTACAAAGCCGAAGTC 59.203 55.000 8.26 0.00 38.70 3.01
183 184 2.928416 GCTGGTACAAAGCCGAAGT 58.072 52.632 8.26 0.00 38.70 3.01
189 190 1.165270 AATGACGGCTGGTACAAAGC 58.835 50.000 10.52 10.52 38.70 3.51
190 191 3.915437 AAAATGACGGCTGGTACAAAG 57.085 42.857 0.00 0.00 38.70 2.77
191 192 3.886505 AGAAAAATGACGGCTGGTACAAA 59.113 39.130 0.00 0.00 38.70 2.83
192 193 3.482436 AGAAAAATGACGGCTGGTACAA 58.518 40.909 0.00 0.00 38.70 2.41
193 194 3.134574 AGAAAAATGACGGCTGGTACA 57.865 42.857 0.00 0.00 0.00 2.90
194 195 4.215613 AGAAAGAAAAATGACGGCTGGTAC 59.784 41.667 0.00 0.00 0.00 3.34
195 196 4.394729 AGAAAGAAAAATGACGGCTGGTA 58.605 39.130 0.00 0.00 0.00 3.25
196 197 3.222603 AGAAAGAAAAATGACGGCTGGT 58.777 40.909 0.00 0.00 0.00 4.00
197 198 3.923017 AGAAAGAAAAATGACGGCTGG 57.077 42.857 0.00 0.00 0.00 4.85
198 199 6.438763 AGTAAAGAAAGAAAAATGACGGCTG 58.561 36.000 0.00 0.00 0.00 4.85
199 200 6.635030 AGTAAAGAAAGAAAAATGACGGCT 57.365 33.333 0.00 0.00 0.00 5.52
200 201 7.694388 AAAGTAAAGAAAGAAAAATGACGGC 57.306 32.000 0.00 0.00 0.00 5.68
263 264 9.836864 TCATCAACTTTGCTAATATGTCTACAT 57.163 29.630 0.63 0.63 40.22 2.29
264 265 9.317936 CTCATCAACTTTGCTAATATGTCTACA 57.682 33.333 0.00 0.00 0.00 2.74
265 266 9.534565 TCTCATCAACTTTGCTAATATGTCTAC 57.465 33.333 0.00 0.00 0.00 2.59
267 268 9.107177 CTTCTCATCAACTTTGCTAATATGTCT 57.893 33.333 0.00 0.00 0.00 3.41
268 269 8.887717 ACTTCTCATCAACTTTGCTAATATGTC 58.112 33.333 0.00 0.00 0.00 3.06
269 270 8.798859 ACTTCTCATCAACTTTGCTAATATGT 57.201 30.769 0.00 0.00 0.00 2.29
271 272 9.890629 TGTACTTCTCATCAACTTTGCTAATAT 57.109 29.630 0.00 0.00 0.00 1.28
272 273 9.719355 TTGTACTTCTCATCAACTTTGCTAATA 57.281 29.630 0.00 0.00 0.00 0.98
273 274 8.621532 TTGTACTTCTCATCAACTTTGCTAAT 57.378 30.769 0.00 0.00 0.00 1.73
274 275 8.445275 TTTGTACTTCTCATCAACTTTGCTAA 57.555 30.769 0.00 0.00 0.00 3.09
275 276 8.621532 ATTTGTACTTCTCATCAACTTTGCTA 57.378 30.769 0.00 0.00 0.00 3.49
276 277 6.942532 TTTGTACTTCTCATCAACTTTGCT 57.057 33.333 0.00 0.00 0.00 3.91
277 278 9.677567 TTTATTTGTACTTCTCATCAACTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
280 281 9.574516 AGGTTTATTTGTACTTCTCATCAACTT 57.425 29.630 0.00 0.00 0.00 2.66
281 282 9.220767 GAGGTTTATTTGTACTTCTCATCAACT 57.779 33.333 0.00 0.00 0.00 3.16
282 283 8.999431 TGAGGTTTATTTGTACTTCTCATCAAC 58.001 33.333 0.00 0.00 0.00 3.18
283 284 9.567776 TTGAGGTTTATTTGTACTTCTCATCAA 57.432 29.630 0.00 0.00 31.35 2.57
284 285 9.567776 TTTGAGGTTTATTTGTACTTCTCATCA 57.432 29.630 0.00 0.00 31.35 3.07
285 286 9.827411 GTTTGAGGTTTATTTGTACTTCTCATC 57.173 33.333 0.00 0.00 31.35 2.92
286 287 9.349713 TGTTTGAGGTTTATTTGTACTTCTCAT 57.650 29.630 0.00 0.00 31.35 2.90
287 288 8.740123 TGTTTGAGGTTTATTTGTACTTCTCA 57.260 30.769 0.00 0.00 0.00 3.27
319 320 8.674607 GGTTTTGGAATCTCGATGTACTAATTT 58.325 33.333 0.00 0.00 0.00 1.82
320 321 7.827236 TGGTTTTGGAATCTCGATGTACTAATT 59.173 33.333 0.00 0.00 0.00 1.40
321 322 7.280205 GTGGTTTTGGAATCTCGATGTACTAAT 59.720 37.037 0.00 0.00 0.00 1.73
322 323 6.592607 GTGGTTTTGGAATCTCGATGTACTAA 59.407 38.462 0.00 0.00 0.00 2.24
323 324 6.103997 GTGGTTTTGGAATCTCGATGTACTA 58.896 40.000 0.00 0.00 0.00 1.82
324 325 4.935808 GTGGTTTTGGAATCTCGATGTACT 59.064 41.667 0.00 0.00 0.00 2.73
325 326 4.094442 GGTGGTTTTGGAATCTCGATGTAC 59.906 45.833 0.00 0.00 0.00 2.90
328 329 3.081061 TGGTGGTTTTGGAATCTCGATG 58.919 45.455 0.00 0.00 0.00 3.84
492 502 6.406512 GCCCAAGTGAAAAAGGAAAAGAAGTA 60.407 38.462 0.00 0.00 0.00 2.24
493 503 5.626809 GCCCAAGTGAAAAAGGAAAAGAAGT 60.627 40.000 0.00 0.00 0.00 3.01
494 504 4.811024 GCCCAAGTGAAAAAGGAAAAGAAG 59.189 41.667 0.00 0.00 0.00 2.85
528 539 8.862325 ACGATATCCATTTATATTTCAGCCAA 57.138 30.769 0.00 0.00 0.00 4.52
562 573 6.921486 TTTCGGCCTATAATATCTGGTACA 57.079 37.500 0.00 0.00 0.00 2.90
587 856 8.894592 ACAGGTCCAACTATGATATCCATTTAT 58.105 33.333 0.00 0.00 36.71 1.40
589 858 7.000472 CACAGGTCCAACTATGATATCCATTT 59.000 38.462 0.00 0.00 36.71 2.32
590 859 6.329986 TCACAGGTCCAACTATGATATCCATT 59.670 38.462 0.00 0.00 36.71 3.16
591 860 5.846164 TCACAGGTCCAACTATGATATCCAT 59.154 40.000 0.00 0.00 39.25 3.41
592 861 5.215845 TCACAGGTCCAACTATGATATCCA 58.784 41.667 0.00 0.00 0.00 3.41
593 862 5.279708 CCTCACAGGTCCAACTATGATATCC 60.280 48.000 0.00 0.00 0.00 2.59
594 863 5.279708 CCCTCACAGGTCCAACTATGATATC 60.280 48.000 0.00 0.00 31.93 1.63
595 864 4.594920 CCCTCACAGGTCCAACTATGATAT 59.405 45.833 0.00 0.00 31.93 1.63
596 865 3.967326 CCCTCACAGGTCCAACTATGATA 59.033 47.826 0.00 0.00 31.93 2.15
597 866 2.774234 CCCTCACAGGTCCAACTATGAT 59.226 50.000 0.00 0.00 31.93 2.45
598 867 2.187958 CCCTCACAGGTCCAACTATGA 58.812 52.381 0.00 0.00 31.93 2.15
599 868 2.187958 TCCCTCACAGGTCCAACTATG 58.812 52.381 0.00 0.00 31.93 2.23
600 869 2.642171 TCCCTCACAGGTCCAACTAT 57.358 50.000 0.00 0.00 31.93 2.12
601 870 2.642171 ATCCCTCACAGGTCCAACTA 57.358 50.000 0.00 0.00 31.93 2.24
602 871 2.642171 TATCCCTCACAGGTCCAACT 57.358 50.000 0.00 0.00 31.93 3.16
603 872 3.933861 AATATCCCTCACAGGTCCAAC 57.066 47.619 0.00 0.00 31.93 3.77
604 873 3.624707 GCAAATATCCCTCACAGGTCCAA 60.625 47.826 0.00 0.00 31.93 3.53
605 874 2.092429 GCAAATATCCCTCACAGGTCCA 60.092 50.000 0.00 0.00 31.93 4.02
617 886 1.235724 GCACCTACCCGCAAATATCC 58.764 55.000 0.00 0.00 0.00 2.59
782 1052 3.943034 CGAGCCGACGATCGAGCT 61.943 66.667 24.34 24.41 44.64 4.09
783 1053 4.239203 ACGAGCCGACGATCGAGC 62.239 66.667 24.34 20.21 43.74 5.03
784 1054 2.052941 GACGAGCCGACGATCGAG 60.053 66.667 24.34 14.83 43.74 4.04
785 1055 3.921722 CGACGAGCCGACGATCGA 61.922 66.667 24.34 0.00 46.01 3.59
786 1056 4.219846 ACGACGAGCCGACGATCG 62.220 66.667 14.88 14.88 46.01 3.69
787 1057 2.350985 GACGACGAGCCGACGATC 60.351 66.667 20.90 12.91 46.01 3.69
788 1058 3.873883 GGACGACGAGCCGACGAT 61.874 66.667 20.90 9.23 46.01 3.73
791 1061 2.307137 CTACTGGACGACGAGCCGAC 62.307 65.000 0.00 0.00 0.00 4.79
792 1062 2.046988 TACTGGACGACGAGCCGA 60.047 61.111 0.00 0.00 0.00 5.54
793 1063 1.086067 TACTACTGGACGACGAGCCG 61.086 60.000 0.00 2.32 0.00 5.52
794 1064 0.376502 GTACTACTGGACGACGAGCC 59.623 60.000 0.00 2.94 0.00 4.70
795 1065 1.062294 CTGTACTACTGGACGACGAGC 59.938 57.143 0.00 0.00 0.00 5.03
796 1066 1.062294 GCTGTACTACTGGACGACGAG 59.938 57.143 0.00 0.00 0.00 4.18
928 1223 0.467659 GCTAGCTAGGGGTCGAAGGA 60.468 60.000 22.10 0.00 0.00 3.36
935 1235 4.566070 CGACTTAGATAGCTAGCTAGGGGT 60.566 50.000 27.42 20.63 31.45 4.95
936 1236 3.942748 CGACTTAGATAGCTAGCTAGGGG 59.057 52.174 27.42 18.29 31.45 4.79
946 1246 5.617308 CGATGGTTAGGTCGACTTAGATAGC 60.617 48.000 16.46 7.73 40.11 2.97
982 1294 1.681793 CATGGCTAGTAGCTGGTACGT 59.318 52.381 21.20 3.37 41.99 3.57
983 1295 1.954382 TCATGGCTAGTAGCTGGTACG 59.046 52.381 21.20 5.38 41.99 3.67
984 1296 2.297597 CCTCATGGCTAGTAGCTGGTAC 59.702 54.545 21.20 8.91 41.99 3.34
985 1297 2.598565 CCTCATGGCTAGTAGCTGGTA 58.401 52.381 21.20 6.74 41.99 3.25
986 1298 1.418334 CCTCATGGCTAGTAGCTGGT 58.582 55.000 21.20 5.50 41.99 4.00
987 1299 0.683973 CCCTCATGGCTAGTAGCTGG 59.316 60.000 21.20 14.39 41.99 4.85
988 1300 1.617850 CTCCCTCATGGCTAGTAGCTG 59.382 57.143 21.20 12.89 41.99 4.24
989 1301 2.008242 CTCCCTCATGGCTAGTAGCT 57.992 55.000 21.20 0.00 41.99 3.32
990 1302 0.320050 GCTCCCTCATGGCTAGTAGC 59.680 60.000 14.09 14.09 41.46 3.58
991 1303 0.972883 GGCTCCCTCATGGCTAGTAG 59.027 60.000 0.00 0.00 0.00 2.57
992 1304 0.264657 TGGCTCCCTCATGGCTAGTA 59.735 55.000 0.00 0.00 0.00 1.82
993 1305 1.003442 TGGCTCCCTCATGGCTAGT 59.997 57.895 0.00 0.00 0.00 2.57
1074 1421 1.035932 TAGTAGTGGTCAGGCGCTCC 61.036 60.000 7.64 5.94 0.00 4.70
1090 1437 0.249073 GACCGCGCATCACTGATAGT 60.249 55.000 8.75 0.00 0.00 2.12
1137 1487 1.805945 CGTCGTCCCAGCAAGTAGC 60.806 63.158 0.00 0.00 46.19 3.58
1160 1510 1.684035 TCCTCGTCCTCGGAGAAGT 59.316 57.895 6.58 0.00 34.09 3.01
1229 1579 2.021931 GCATCGCAAGCACGTAGC 59.978 61.111 0.00 0.00 46.19 3.58
1238 1588 2.270923 GGATCGCTATATGCATCGCAA 58.729 47.619 0.19 0.00 43.62 4.85
1240 1590 0.848942 CGGATCGCTATATGCATCGC 59.151 55.000 0.19 3.81 43.06 4.58
1241 1591 2.194800 ACGGATCGCTATATGCATCG 57.805 50.000 0.19 0.00 43.06 3.84
1252 1606 3.679831 GCTACTAGCTACGGATCGC 57.320 57.895 0.35 0.00 38.45 4.58
1263 1617 6.642707 ACATAACCAGAAGCTAGCTACTAG 57.357 41.667 19.70 10.29 37.16 2.57
1264 1618 6.834451 AGAACATAACCAGAAGCTAGCTACTA 59.166 38.462 19.70 3.93 0.00 1.82
1265 1619 5.659079 AGAACATAACCAGAAGCTAGCTACT 59.341 40.000 19.70 2.33 0.00 2.57
1269 1623 3.311048 GCAGAACATAACCAGAAGCTAGC 59.689 47.826 6.62 6.62 0.00 3.42
1280 1634 5.291858 TGATTCGTCATCAGCAGAACATAAC 59.708 40.000 0.00 0.00 36.94 1.89
1281 1635 5.291858 GTGATTCGTCATCAGCAGAACATAA 59.708 40.000 0.95 0.00 42.98 1.90
1492 1858 5.170748 GCACTTCATTTGGAATTACCCTTG 58.829 41.667 0.00 0.00 38.00 3.61
1498 1864 2.159448 CGGCGCACTTCATTTGGAATTA 60.159 45.455 10.83 0.00 34.32 1.40
1499 1865 1.402720 CGGCGCACTTCATTTGGAATT 60.403 47.619 10.83 0.00 34.32 2.17
1500 1866 0.171007 CGGCGCACTTCATTTGGAAT 59.829 50.000 10.83 0.00 34.32 3.01
1502 1868 2.331893 CCGGCGCACTTCATTTGGA 61.332 57.895 10.83 0.00 0.00 3.53
1528 1894 3.009714 AGAAGGAAGGACGGCCCC 61.010 66.667 1.76 0.00 34.66 5.80
1529 1895 2.585153 GAGAAGGAAGGACGGCCC 59.415 66.667 1.76 0.00 33.31 5.80
1542 1908 1.577922 CGAGTCCGTCGTTGGAGAA 59.422 57.895 0.00 0.00 44.20 2.87
1543 1909 3.260931 CGAGTCCGTCGTTGGAGA 58.739 61.111 0.00 0.00 44.20 3.71
1552 1918 3.054503 CCCAGTCGTCGAGTCCGT 61.055 66.667 0.00 0.00 37.05 4.69
1553 1919 4.477975 GCCCAGTCGTCGAGTCCG 62.478 72.222 0.00 0.00 37.07 4.79
1555 1921 1.078759 CAATGCCCAGTCGTCGAGTC 61.079 60.000 0.00 0.00 0.00 3.36
1556 1922 1.079819 CAATGCCCAGTCGTCGAGT 60.080 57.895 0.00 0.00 0.00 4.18
1557 1923 1.078759 GACAATGCCCAGTCGTCGAG 61.079 60.000 0.00 0.00 0.00 4.04
1558 1924 1.080093 GACAATGCCCAGTCGTCGA 60.080 57.895 0.00 0.00 0.00 4.20
1559 1925 3.474806 GACAATGCCCAGTCGTCG 58.525 61.111 0.00 0.00 0.00 5.12
1564 1930 2.047274 CGTCCGACAATGCCCAGT 60.047 61.111 0.00 0.00 0.00 4.00
1602 1986 1.805869 CTGAGCTCCAGGTTCACTTG 58.194 55.000 12.15 0.00 39.23 3.16
1605 1989 1.376553 GGCTGAGCTCCAGGTTCAC 60.377 63.158 12.15 0.00 43.13 3.18
1621 2005 1.593750 CTGCACGGCATAGAGAGGC 60.594 63.158 0.00 0.00 38.13 4.70
1641 2025 5.494390 AACCCTCCAAATTAAGTAGACGT 57.506 39.130 0.00 0.00 0.00 4.34
1663 2047 4.992319 CGAAGTATGTAAACACCAGGTGAA 59.008 41.667 27.39 8.23 36.96 3.18
1678 2085 3.310774 CAGAAGCCATCAACCGAAGTATG 59.689 47.826 0.00 0.00 0.00 2.39
1689 2103 4.891168 TCTTATACGGTACAGAAGCCATCA 59.109 41.667 0.00 0.00 0.00 3.07
1695 2109 6.750963 GGACTGTTTCTTATACGGTACAGAAG 59.249 42.308 10.89 6.11 36.04 2.85
1708 2122 5.006896 TGAGGGAGTAGGACTGTTTCTTA 57.993 43.478 0.00 0.00 0.00 2.10
1709 2123 3.835395 CTGAGGGAGTAGGACTGTTTCTT 59.165 47.826 0.00 0.00 0.00 2.52
1713 2127 2.557901 GGACTGAGGGAGTAGGACTGTT 60.558 54.545 0.00 0.00 33.83 3.16
1715 2129 1.770294 GGACTGAGGGAGTAGGACTG 58.230 60.000 0.00 0.00 33.83 3.51
1716 2130 0.256464 CGGACTGAGGGAGTAGGACT 59.744 60.000 0.00 0.00 33.83 3.85
1717 2131 0.255318 TCGGACTGAGGGAGTAGGAC 59.745 60.000 0.00 0.00 33.83 3.85
1718 2132 0.997363 TTCGGACTGAGGGAGTAGGA 59.003 55.000 0.00 0.00 33.83 2.94
1719 2133 1.848652 TTTCGGACTGAGGGAGTAGG 58.151 55.000 0.00 0.00 33.83 3.18
1720 2134 3.851098 CTTTTTCGGACTGAGGGAGTAG 58.149 50.000 0.00 0.00 33.83 2.57
1722 2136 1.270893 GCTTTTTCGGACTGAGGGAGT 60.271 52.381 0.00 0.00 37.76 3.85
1723 2137 1.002544 AGCTTTTTCGGACTGAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
1725 2139 1.537202 CAAGCTTTTTCGGACTGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
1726 2140 2.222027 ACAAGCTTTTTCGGACTGAGG 58.778 47.619 0.00 0.00 0.00 3.86
1727 2141 2.224314 GGACAAGCTTTTTCGGACTGAG 59.776 50.000 0.00 0.00 0.00 3.35
1728 2142 2.218603 GGACAAGCTTTTTCGGACTGA 58.781 47.619 0.00 0.00 0.00 3.41
1729 2143 1.266989 GGGACAAGCTTTTTCGGACTG 59.733 52.381 0.00 0.00 0.00 3.51
1730 2144 1.143073 AGGGACAAGCTTTTTCGGACT 59.857 47.619 0.00 0.00 0.00 3.85
1731 2145 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
1732 2146 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
1733 2147 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
1734 2148 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
1735 2149 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
1736 2150 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
1737 2151 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
1738 2152 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
1739 2153 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
1740 2154 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
1741 2155 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1742 2156 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
1743 2157 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
1744 2158 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
1745 2159 5.012561 AGCTAGATACATCCATTTGAGGGAC 59.987 44.000 0.00 0.00 37.23 4.46
1746 2160 5.158141 AGCTAGATACATCCATTTGAGGGA 58.842 41.667 0.00 0.00 39.14 4.20
1747 2161 5.486526 GAGCTAGATACATCCATTTGAGGG 58.513 45.833 0.00 0.00 0.00 4.30
1748 2162 5.012458 TGGAGCTAGATACATCCATTTGAGG 59.988 44.000 0.00 0.00 36.92 3.86
1749 2163 6.106648 TGGAGCTAGATACATCCATTTGAG 57.893 41.667 0.00 0.00 36.92 3.02
1750 2164 6.100279 ACTTGGAGCTAGATACATCCATTTGA 59.900 38.462 0.00 0.00 41.33 2.69
1751 2165 6.294473 ACTTGGAGCTAGATACATCCATTTG 58.706 40.000 0.00 0.00 41.33 2.32
1752 2166 6.506538 ACTTGGAGCTAGATACATCCATTT 57.493 37.500 0.00 0.00 41.33 2.32
1753 2167 6.506538 AACTTGGAGCTAGATACATCCATT 57.493 37.500 0.00 0.00 41.33 3.16
1754 2168 6.784969 ACTAACTTGGAGCTAGATACATCCAT 59.215 38.462 0.00 0.00 41.33 3.41
1755 2169 6.136857 ACTAACTTGGAGCTAGATACATCCA 58.863 40.000 0.00 0.00 40.04 3.41
1756 2170 6.658188 ACTAACTTGGAGCTAGATACATCC 57.342 41.667 0.00 0.00 0.00 3.51
1757 2171 8.398878 AGTACTAACTTGGAGCTAGATACATC 57.601 38.462 0.00 0.00 29.00 3.06
1758 2172 9.509956 CTAGTACTAACTTGGAGCTAGATACAT 57.490 37.037 3.76 0.00 37.15 2.29
1759 2173 8.712103 TCTAGTACTAACTTGGAGCTAGATACA 58.288 37.037 3.76 0.00 37.15 2.29
1760 2174 9.729281 ATCTAGTACTAACTTGGAGCTAGATAC 57.271 37.037 3.76 0.00 40.71 2.24
1762 2176 9.729281 GTATCTAGTACTAACTTGGAGCTAGAT 57.271 37.037 17.73 17.73 43.19 1.98
1763 2177 8.712103 TGTATCTAGTACTAACTTGGAGCTAGA 58.288 37.037 3.76 0.00 38.12 2.43
1764 2178 8.905660 TGTATCTAGTACTAACTTGGAGCTAG 57.094 38.462 3.76 0.00 37.15 3.42
1765 2179 9.504708 GATGTATCTAGTACTAACTTGGAGCTA 57.495 37.037 3.76 0.00 37.15 3.32
1766 2180 7.449086 GGATGTATCTAGTACTAACTTGGAGCT 59.551 40.741 3.76 0.00 37.15 4.09
1767 2181 7.230913 TGGATGTATCTAGTACTAACTTGGAGC 59.769 40.741 3.76 0.00 37.15 4.70
1768 2182 8.693120 TGGATGTATCTAGTACTAACTTGGAG 57.307 38.462 3.76 0.00 37.15 3.86
1769 2183 9.656323 AATGGATGTATCTAGTACTAACTTGGA 57.344 33.333 3.76 0.00 37.15 3.53
1777 2191 9.091220 GTCCCTTAAATGGATGTATCTAGTACT 57.909 37.037 0.00 0.00 33.65 2.73
1784 2198 7.881775 AACTTGTCCCTTAAATGGATGTATC 57.118 36.000 0.00 0.00 33.65 2.24
1809 2223 7.472334 ACATAGTACTTCCTCCGTCTAAAAA 57.528 36.000 0.00 0.00 0.00 1.94
1810 2224 8.627403 CATACATAGTACTTCCTCCGTCTAAAA 58.373 37.037 0.00 0.00 0.00 1.52
1811 2225 7.776969 ACATACATAGTACTTCCTCCGTCTAAA 59.223 37.037 0.00 0.00 0.00 1.85
1812 2226 7.285566 ACATACATAGTACTTCCTCCGTCTAA 58.714 38.462 0.00 0.00 0.00 2.10
1813 2227 6.835174 ACATACATAGTACTTCCTCCGTCTA 58.165 40.000 0.00 0.00 0.00 2.59
1814 2228 5.692928 ACATACATAGTACTTCCTCCGTCT 58.307 41.667 0.00 0.00 0.00 4.18
1815 2229 7.174599 ACATACATACATAGTACTTCCTCCGTC 59.825 40.741 0.00 0.00 0.00 4.79
1816 2230 7.002879 ACATACATACATAGTACTTCCTCCGT 58.997 38.462 0.00 0.00 0.00 4.69
1817 2231 7.040617 ACACATACATACATAGTACTTCCTCCG 60.041 40.741 0.00 0.00 0.00 4.63
1818 2232 8.179509 ACACATACATACATAGTACTTCCTCC 57.820 38.462 0.00 0.00 0.00 4.30
1820 2234 9.863650 AGTACACATACATACATAGTACTTCCT 57.136 33.333 0.00 0.00 37.90 3.36
1821 2235 9.894783 CAGTACACATACATACATAGTACTTCC 57.105 37.037 0.00 0.00 38.76 3.46
1832 2246 8.772705 GGAGTAGTAGTCAGTACACATACATAC 58.227 40.741 7.30 0.00 33.62 2.39
1841 2255 5.410746 CGAACTTGGAGTAGTAGTCAGTACA 59.589 44.000 7.30 0.00 33.62 2.90
1842 2256 5.641209 TCGAACTTGGAGTAGTAGTCAGTAC 59.359 44.000 7.30 0.00 0.00 2.73
1843 2257 5.798132 TCGAACTTGGAGTAGTAGTCAGTA 58.202 41.667 7.30 0.00 0.00 2.74
1844 2258 4.649692 TCGAACTTGGAGTAGTAGTCAGT 58.350 43.478 7.30 0.35 0.00 3.41
1845 2259 4.696402 ACTCGAACTTGGAGTAGTAGTCAG 59.304 45.833 4.73 0.00 42.69 3.51
1846 2260 4.649692 ACTCGAACTTGGAGTAGTAGTCA 58.350 43.478 4.73 0.00 42.69 3.41
1847 2261 5.180868 TCAACTCGAACTTGGAGTAGTAGTC 59.819 44.000 6.85 0.00 43.66 2.59
1849 2263 5.624344 TCAACTCGAACTTGGAGTAGTAG 57.376 43.478 6.85 0.00 43.66 2.57
1851 2265 3.305471 GCTCAACTCGAACTTGGAGTAGT 60.305 47.826 6.85 0.00 43.66 2.73
1852 2266 3.246619 GCTCAACTCGAACTTGGAGTAG 58.753 50.000 6.85 3.75 43.66 2.57
1853 2267 2.029290 GGCTCAACTCGAACTTGGAGTA 60.029 50.000 6.85 0.00 43.66 2.59
1854 2268 1.270358 GGCTCAACTCGAACTTGGAGT 60.270 52.381 0.80 0.80 46.27 3.85
1856 2270 0.034896 GGGCTCAACTCGAACTTGGA 59.965 55.000 3.33 0.00 0.00 3.53
1857 2271 0.250295 TGGGCTCAACTCGAACTTGG 60.250 55.000 0.00 0.00 0.00 3.61
1864 2280 1.811266 CGGTGATGGGCTCAACTCG 60.811 63.158 0.00 0.00 39.62 4.18
1867 2283 2.045926 AGCGGTGATGGGCTCAAC 60.046 61.111 0.00 0.00 38.29 3.18
1872 2288 0.179018 ATTAAGGAGCGGTGATGGGC 60.179 55.000 0.00 0.00 0.00 5.36
1885 2301 8.930760 GCTGCTTCATATACTGAGTAATTAAGG 58.069 37.037 0.00 0.00 34.68 2.69
1886 2302 9.703892 AGCTGCTTCATATACTGAGTAATTAAG 57.296 33.333 0.00 0.33 34.68 1.85
1889 2305 7.989741 ACAAGCTGCTTCATATACTGAGTAATT 59.010 33.333 12.82 0.00 34.68 1.40
1897 2313 7.504403 AGACAATACAAGCTGCTTCATATACT 58.496 34.615 12.82 10.36 0.00 2.12
1898 2314 7.721286 AGACAATACAAGCTGCTTCATATAC 57.279 36.000 12.82 8.65 0.00 1.47
1899 2315 8.421002 TGTAGACAATACAAGCTGCTTCATATA 58.579 33.333 12.82 3.50 0.00 0.86
1900 2316 7.275183 TGTAGACAATACAAGCTGCTTCATAT 58.725 34.615 12.82 10.49 0.00 1.78
1901 2317 6.639563 TGTAGACAATACAAGCTGCTTCATA 58.360 36.000 12.82 8.55 0.00 2.15
1902 2318 5.491070 TGTAGACAATACAAGCTGCTTCAT 58.509 37.500 12.82 6.07 0.00 2.57
1903 2319 4.893608 TGTAGACAATACAAGCTGCTTCA 58.106 39.130 12.82 3.69 0.00 3.02
1904 2320 5.862811 CTTGTAGACAATACAAGCTGCTTC 58.137 41.667 12.82 0.00 45.02 3.86
1905 2321 5.869753 CTTGTAGACAATACAAGCTGCTT 57.130 39.130 9.53 9.53 45.02 3.91
1916 2332 9.989296 AGCCTATATATCTCTCTTGTAGACAAT 57.011 33.333 0.00 0.00 35.02 2.71
1917 2333 9.456147 GAGCCTATATATCTCTCTTGTAGACAA 57.544 37.037 0.00 0.00 0.00 3.18
1918 2334 8.606830 TGAGCCTATATATCTCTCTTGTAGACA 58.393 37.037 11.26 0.00 0.00 3.41
1919 2335 9.627123 ATGAGCCTATATATCTCTCTTGTAGAC 57.373 37.037 11.26 0.00 0.00 2.59
1920 2336 9.845740 GATGAGCCTATATATCTCTCTTGTAGA 57.154 37.037 11.26 0.00 0.00 2.59
1921 2337 9.625747 TGATGAGCCTATATATCTCTCTTGTAG 57.374 37.037 11.26 0.00 0.00 2.74
1923 2339 9.491406 AATGATGAGCCTATATATCTCTCTTGT 57.509 33.333 11.26 0.00 0.00 3.16
1934 2350 9.121658 CATGAGCATTAAATGATGAGCCTATAT 57.878 33.333 0.00 0.00 0.00 0.86
1935 2351 8.105197 ACATGAGCATTAAATGATGAGCCTATA 58.895 33.333 0.00 0.00 0.00 1.31
1936 2352 6.946583 ACATGAGCATTAAATGATGAGCCTAT 59.053 34.615 0.00 0.00 0.00 2.57
1937 2353 6.301486 ACATGAGCATTAAATGATGAGCCTA 58.699 36.000 0.00 0.00 0.00 3.93
1938 2354 5.138276 ACATGAGCATTAAATGATGAGCCT 58.862 37.500 0.00 0.00 0.00 4.58
1939 2355 5.449107 ACATGAGCATTAAATGATGAGCC 57.551 39.130 0.00 0.00 0.00 4.70
1940 2356 5.458891 GGACATGAGCATTAAATGATGAGC 58.541 41.667 0.00 0.00 0.00 4.26
1941 2357 5.768662 AGGGACATGAGCATTAAATGATGAG 59.231 40.000 0.00 0.00 0.00 2.90
1942 2358 5.698104 AGGGACATGAGCATTAAATGATGA 58.302 37.500 0.00 0.00 0.00 2.92
1943 2359 6.040054 TGAAGGGACATGAGCATTAAATGATG 59.960 38.462 0.00 0.00 0.00 3.07
1984 2412 5.277825 CAAATTGAGTTTTTGCCACGTAGA 58.722 37.500 0.00 0.00 0.00 2.59
1993 2421 6.930722 AGGAGTATTGGCAAATTGAGTTTTTG 59.069 34.615 3.01 0.00 37.18 2.44
1994 2422 7.066307 AGGAGTATTGGCAAATTGAGTTTTT 57.934 32.000 3.01 0.00 0.00 1.94
1995 2423 6.670695 AGGAGTATTGGCAAATTGAGTTTT 57.329 33.333 3.01 0.00 0.00 2.43
1996 2424 6.152831 GGTAGGAGTATTGGCAAATTGAGTTT 59.847 38.462 3.01 0.00 0.00 2.66
1997 2425 5.652452 GGTAGGAGTATTGGCAAATTGAGTT 59.348 40.000 3.01 0.00 0.00 3.01
1998 2426 5.193679 GGTAGGAGTATTGGCAAATTGAGT 58.806 41.667 3.01 0.00 0.00 3.41
1999 2427 4.580580 GGGTAGGAGTATTGGCAAATTGAG 59.419 45.833 3.01 0.00 0.00 3.02
2000 2428 4.017958 TGGGTAGGAGTATTGGCAAATTGA 60.018 41.667 3.01 0.00 0.00 2.57
2001 2429 4.277476 TGGGTAGGAGTATTGGCAAATTG 58.723 43.478 3.01 0.00 0.00 2.32
2002 2430 4.601406 TGGGTAGGAGTATTGGCAAATT 57.399 40.909 3.01 0.00 0.00 1.82
2003 2431 4.601406 TTGGGTAGGAGTATTGGCAAAT 57.399 40.909 3.01 0.00 0.00 2.32
2004 2432 4.601406 ATTGGGTAGGAGTATTGGCAAA 57.399 40.909 3.01 0.00 0.00 3.68
2009 2437 7.935210 ACGGTATAAAATTGGGTAGGAGTATTG 59.065 37.037 0.00 0.00 0.00 1.90
2034 2462 9.290988 TCATCATCCTCTACTTCTCTAATGTAC 57.709 37.037 0.00 0.00 0.00 2.90
2036 2464 8.954834 ATCATCATCCTCTACTTCTCTAATGT 57.045 34.615 0.00 0.00 0.00 2.71
2128 2556 9.202545 CGTACGATTGCATATAATGAATGATTG 57.797 33.333 10.44 0.00 0.00 2.67
2133 2561 8.534333 AGTTCGTACGATTGCATATAATGAAT 57.466 30.769 20.27 0.00 0.00 2.57
2153 2581 8.943002 ACTGTTGGATAAATAAGGTAAAGTTCG 58.057 33.333 0.00 0.00 0.00 3.95
2237 2980 6.202954 GTCACGTGAGCTTTAATTATAGCCAT 59.797 38.462 20.73 6.79 38.14 4.40
2247 2990 2.610374 GGTTGTGTCACGTGAGCTTTAA 59.390 45.455 20.73 7.47 0.00 1.52
2307 3053 7.170998 ACAGAAAACTAAACAACCTACGATCTG 59.829 37.037 0.00 0.00 35.42 2.90
2335 3081 0.329596 GGCCAGATCACCAAGGAAGT 59.670 55.000 0.00 0.00 0.00 3.01
2592 3711 3.440228 GCAAAAAGTTTGCGTAGACCAA 58.560 40.909 9.71 0.00 35.58 3.67
2619 3739 2.892215 TCCAACGCATATACCGTCCATA 59.108 45.455 1.31 0.00 38.06 2.74
2625 3745 1.858458 CTGTGTCCAACGCATATACCG 59.142 52.381 0.00 0.00 38.03 4.02
2634 3754 2.627791 TTGCATCCTGTGTCCAACG 58.372 52.632 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.