>input_sequence_72742
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---------------------------------------------ATGAGGGA------GCCACGACGCAGTCCGAGCAG
GCAGCCGACGACGGCGA---------------GGAGCCGCCGCCGGCCGAAGCTTGTCACGGAGCGCCTGACCACTACTA
TCAGTGATGC---GCGGTCGCTGCAGCCGGCTATGGCTACAGGGGGGCTACTTGCTGGGACGACGACGAACTTCTCCGAG
GACGAGGAGGACCTCCTCATCAAGCTGCATGCTTTGCTCGGAAACCGGTACCTACCTAGCTACGTGCTTGCG----ATGC
ATATAGCGATCCGTAGCTAGTAGCTAGCTTCTGGTTATGTTCTGCTGATGACGAATCACGACTATATCTATCCAGCTGGT
CCATCATCGCCGGGAGGCTGCCTGGGAGGACGGGCGAGGAGGTCGAGGCCCACTGGGGTTCGCCGGCGATGAGGAGGCGC
ACG---GGCGGCGCCGACCCCGACAGCCATCGTGTGCTATTGCAGGCTTTGCTAGCCTCGTCACATGATCAGCA------
---CGGCGAGCATCTGCCAAGGGTAATTCCAAATGAAGTGCGCCGGGAGCACCGGGGCCGTCCTTCCTTCTCCAACGACG
GACTCGACGA---------------CTGGGCATTGTCGGACGCCGACAGCAG---GTGCCTCGCTCAAGTGAACCTGGAG
CTCAGCCTCTCTATGCCGTGCAGTACGTCTACTTAA--------------------------------------------
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>chr3D_1_TraesCS3D01G033100
GTGCAACCATGAATGCACCATGGGCCATCCATACATTTGTGTGACAAAAAATTGGTGGGACCAGGTGTGAGAAATACGCG
AGATTCTCAAACAGGAGACCAAATTGGCTGGTACATCAGGATACGGGGTGAGGTAGCTGCGCCTAATTGGCTGGATGGGC
ACGAGCGCCTTTAGTTAGAAAGGACTTCGGCTTTGTACCAGCCGTCATTTTTCTTTCTTTACTTTTTTGACTATTTTCCT
CTTTACTTTATTTTGTGAAAAGTATGTAGACATATTAGCAAAGTTGATGAGAAGTACAAATAAACCTCAAACATAATATA
AATTAGTACATCGAGATTCCAAAACCACCAAT-TTTTTTTTTACTTTTTAGCTAGTTCT-AAGACTTTTGGCATTGTACG
TAATTTTATTT---AAAAAATCTAGAAAAATACATCATAGGAAGCAATTCCTATATATTTAGTTTAAAAAATCAA----A
TAAATTGAGAGACAAAAACATTAC-TTCTTTTCCTTTTTCACTTGGGCTATCTCATATTTGGCTGAAATATAAATGGATA
TCGTAGTTGCACT-------------------------------------------------------------------
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-------------------------------GTACCAGATATTATAGGCCGAAATATAAATGGATATCATAGTTGGACCT
GTGAGGGATATTTGCGGG-TAGGTGCGGTGCTGCCGACCGTAAGGCGGCATGCATGCTACAGTAGTACCGGTACGTACGT
GCGCGCATGCACGCAGCACACGATGCCACAAGCCGCAACTAACAAAAGCGGCAGCGCACGCGCGTGGGCGTGGCTAGCTA
GCTAGCTAGCTAGCTCGATCGTCGGCTCGTCGTCCAGTA-GTACAGCTGCAGCGATCCAACCGGCCGGTCTTGC----TG
TTACTTCCGGTCAACTGCCAAAAATAAGCT----------------CATGCACGCACGCTTTATATGCCAAC----ATTG
CCACACACACCTCATCTTCTCCT-----CCTTCGACCCCTAGCTAGC------------TATCTAAGTCGACCTAACCAT
CGCAAGCTAGCACACGTACCAGCTACTA--------------GCCATGAGGGA------GCCACGACGCAGTCCGAGCAG
GCAGCCGACGACGGCGA---------------GGAGCCGCCGCCGGCCGAAGCTTGTCACGGAGCGCCTGACCACTACTA
TCAGTGATGC---GCGGTCGCTGCAGCCGGCTATGGCTACAGGGGGGCTACTTGCTGGGACGACGACGAACTTCTCCGAG
GACGAGGAGGACCTCCTCATCAAGCTGCATGCTTTGCTCGGAAACCGGTACCTACCTAGCTACGTGCTTGCG----ATGC
ATATAGCGATCCGTAGCTAGTAGCTAGCTTCTGGTTATGTTCTGCTGATGACGAATCACGACTATATCTATCCAGCTGGT
CCATCATCGCCGGGAGGCTGCCTGGGAGGACGGGCGAGGAGGTCGAGGCCCACTGGGGTTCGCCGGCGATGAGGAGGCGC
ACG---GGCGGCGCCGACCCCGACAGCCATCGTGTGCTATTGCAGGCTTTGCTAGCCTCGTCACATGATCAGCA------
---CGGCGAGCATCTGCCAAGGGTAATTCCAAATGAAGTGCGCCGGGAGCACCGGGGCCGTCCTTCCTTCTCCAACGACG
GACTCGACGA---------------CTGGGCATTGTCGGACGCCGACAGCAG---GTGCCTCGCTCAAGTGAACCTGGAG
CTCAGCCTCTCTATGCCGTGCAGTACGTCTACTTAATTTGGAGGGTT-----------------------TCACCTGGTG
TTTACA-------TACTTCGGTTGATGGCTTCTGTACCGTATAAGAAACAGTCCTACTCCCTCAGTCCGAAAAAGCTTGT
CCCTCAAATGGATGTATCTAGCTCCAAGTTAGTACTAGATACATCCATTTAAGGGACAAGTTTTTTTAGACGGAGGAAGT
ACTATGTATGTATGTGTACTGACTACTACTC--CAAGTTCGAGTTGAGCCCATCACCGCTCCTTAATTACTCAGTATATG
AAGCAGCTTGTATTGTCTACAAGAGAGATATATAGGCTCATCATTTAATGCT----CA--TGTCCCTTCAAAAGTTCAGA
TA------TGATCTACGTGGCAAAAACTCAATTTGCCAATACTCCTACCCAATTTTATACCGTACATTAGAGAAGTAGAG
GATGATGATCTTAAAATGCTTGACTTTGTGGACCACACTTCTATTTTAATTTGAAAGTTCTTTTTATAAATATGACAATC
ATTCATTATATGCAATCGTACGAACTTTACC----TTATTTATCCAACAGTACTAAAGCTAAAGCCATAGCTTAG-----
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------------------------------------------------------------------GTAAGCAATGAAAT
GAAAGACTTACAAAGTTATATGGCTATAATTAAA--GCTCACGTGACACAACCTTGTA-TTGTTTTATTTAGTTCAGTCC
CTGTCTCATTATCAGATCGTAGGTTGTTTAGTTTTCTGTTACTTCCTTGGTGATCTGGCCGA------------------
---AATCGGAGAGGGGCCTCTCTTTTT--TCAAACAAAAGTCGAGCCTCCCTAAGTTAGTGCGTTTTCTTTTTGTTTTGT
TTAATAAAGTGTCAAGAGTTGCCTTTAG----------------------------------------------------
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--------------------------------------------------------CATGATTAGATTAGAATATGGTTA
CTAAACAAGCAATTGATGTAGCTTTGATGATCTTGTGGGAATTTTCACAGCTCAATGAATTATCATAGAAATCTGGTAAC
TATAAGTACAATATGTAA--CTATCAGTCTTTGGTCTACGCAAACT-TTTTGCATGATTATGGACGGTATATGCGTTGGA
CACAGGATGCAA
>chr3B_319
TAAAT---------------------------------------------------------------------------
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------TAAATCGAGGTTCCGAAACCACCAAACTTTTTCTTTACTTTTTAGCTAGTTTTGAAGACTATTGGTGTTGTACC
TGGCTTTATTTTAAAAAAAA-CTAGAAAAATATATTATAGGAAGCAATTCCTATATATTCAGTTCAAAGAGAACAAAATA
TAAATTGAGAGACAAAAAAATATATTTCTTTTCCTTTTTCACTTGGGCTATCTCATATGTGGCCGAAATATAAATCGACA
TTGTCGTTGCACAGTACTCCCTCCGTTTTTATTTACTCCGCATATTATCTTTGGTCAAAGTCAAGCTTTCTAAACTTTGA
CAAAGTTTGTAGACAAAAATATTAACATATACAATAACAAATCGACACCATTAGATTCATTATTGAATATACTTCTACAC
CATATAGATTTGTTATGGTAAATATTCGTATTCTTTTCTATAAACTTGGTCAAATTTAGAAAGTTTGACTTCAATTAACA
CTAATACGCGGAGTAAATAAAAACGGAGGGAGTACCAGATATTATGGGCATATAGGTGG---------------------
GTGAGTCATATTTGCGGGGTAGGTACGGTGCTGCCGACCGTAAGGCGGCATGCATGCTACAGTAGTACCGGTACGTACGT
GCGCGCAGGCACGCAGCACACGATGCCACAAGCCACAACTAACAAAAGCGGCAGCGCACGCGCGT------GGCTAGCTA
GG------------------------TCGTCGTCCAGTACGTACAGCTGAAGCGATCCAACCGGCCGGTCTTGCATGCTG
TTACTTCCAGTCAACTGCCAAAAACAAATAAAAAATGGAGCTCATGCACGCACGCATGCTTTATATGCCAACATATATTG
CCACACACACCTCATCTTCTCCACCGTACCTTCGGACCCTAGCTATCTAACCCTAGCTATATCTAAGTCGACCTAACCAT
CGCAGGCACGCAC------------CTA--------------ACCATGAGGGAGCCACGGCCACGACGAAGTCCGTGCAA
GCAGCCGACGACGGAGAAACACGGCCAGCCATGGCGCCGCCGGACGAACAGCAGCACGCGAGATGCCAAGCTTCTCTCTA
GCGATAGTGCCGTGCCGTCGCCGCAGCCGGCCAAGGCTACAGGGGGACTACTTGCTGGGGCAACGACGAGCTTCTCCGAG
GACGAGGAGGACCTCCTCATCAAGTTGCACGCTTTGCTCGGAAACCGGTATA----TATCTACGTGCCTAAG----ACGC
ATATATCGATC------------CTAGCTTCTGTATATTTTCTGCTGATGACGAATCACGACCATGTCCATCCAGCTGGC
CCATCATCGCCGGGAGGCTGCCTGGGAGGACGGGCGAGGAGGTGGAGGCCCACTGGGGTTCGCCGGCGATGAGGAGGCGC
ACG---GGCGGCGCCGATCCCGACGGCCATCGTGCACTACTGCAGGCTTTGCTAGCCTCCTCACATGATCAGCA------
---CGGCGAGCATCTGCAAAGGACCGTGCCAAACCAAGTACGCGACGAGCGCCCCGGCCGTCCTACCGACGACAGTGCAG
TGTCGGACGCCGGAAGCAGCAGAGCCTGCGCATTATCGGACGCCGACAGCAG---GTGCCTCTCTGAACTGAACCTGGAG
CTCACCCTCCCTACGCCGTGCAGTGCGTCTACTTGATTTGGAGGGTGGGTGTCATATC----------------------
-----ATATACTGTACTTCGGTCGATGGTTTCTGTACCGTAAGAAACAGTCCTATTATT---------------------
-------------------------------GTACTATATATATGCATATGCATACTGACT----------------AGT
ACTATATATGTATGACGCACAAATTAATCCTCACAAGTTTGAATTGATCCCATCACCGCCAGTTCATTACTC--------
---------------------------------------ATCATTTAATGCT----CATGTGTCCCTTCAAAAGTTCAGA
TAGGAGTATGAACTACTC--------------TGGCTAATACTCCTACCCAATTGTATACCATGCATTAGAGAAGTAGAG
GATGATGATCTTAAAATGCTTGACTTTGTGGACTACAC-----TTCTATTTTGAAAGTTCTTTTTACAAATATGATAATC
GTTCATTATATGAAATCCTAAGAACTTTACATGATTTATTTATCCAAAAGTACTAAAGCTGAAGCTATAGCTTAT-----
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------------------------------------------------------------------GTAAGCAATGAAAT
GAAAGACTTACAAAGTTATGTGGCTATAAATAAA--GCTCACATGGCACAACCTTGTA-TT-TTTTATTTAGTTCATTCA
CTGTCTCATTATTAGATCGTAGGTTGTTTAGTTTTCTGTTGCTTCCTTGGTGATCTAGTCGAAACGAGATTTCTATTAAT
GGCAATCGGAGAGCATGCCTTTC-TTTTGTCAAACAAAAGCCGAGCCTCCCTAAGTTAGTGTGTTTTCTCTATATTTTGT
TAAATAAAGTGTCAAGAGTTGCCTTTAG----------------------------------------------------
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--------------------------------------------------------CACGATTAGATTAGAATATGGTTA
CTAAACAAGCAATTGATGTAGCCTTGATGATCTTGTGGAAATTTTCACAGCTCAATGAATTGTCATAGAAATCTGGTAAC
TATCAGTACAATATGTAA--CTATCAATCTCCGGGCTTTTGCATCACTTTTGCAAGATCATGGATGGTGTATATGTTGGA
CACATGGAGCAA
>chr3A_330
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---------ATCGAGGTTCCGAAACCACCAAACTTTTTCTTTACTTTTTAGCTAGTTCTGAATACTTTTGGTGTTGTACC
TGACTTTATTT---AAAAAA-CTAGAAAAATATATTATAGGAACCAACTCCTAGATATTCAGTTCAAAGAGAATAAAATA
TAAATTGAGAGACAAAAACATATATTTCTTTTCCTTTTTCACTTGGGCTATCTCATATGTGGCCGAAA-ATAAAGCGGCA
TTGTGGTTGCACA-------------------------------------------------------------------
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-------------------------------GTACCAGATATTATAGGCATATGGTAGG---------------GGACCT
GTGAGTGATATTTGCGGG-TAGGTACGGTGCTGCCGACCGTAAGGCGGCATGCATGCTACAGTAGTACCAGTACGTACGT
GCGCGCATGCACGCAGCACACGATGCCACAAGCCGCAACTAACAAAAGAGGCAGCGCACGCGCGTGGGCGTGGCTAGCTA
GCTAGCTAGCT--------------------------TA-GTACAGCTGCAGCGATCCAACCGGCCGGTCTTGC----TG
TTACTTCCGGTCAACTGCCAAAAATAAGCT----------------CATGCACGCACGCTTTATATGCCAAC----ATTG
CCACACACACCTCATCTTCTCCACCTTC------GACCCTAGCTATCTAACCCTA----TATCTAAGTCGACCTAACCAT
CGCAAGCTAGCAC------------GTACCAGCTACTAGCTAGCCATGAGGGA------GCCACGACGCAGTCCGAGCAG
GCAGCCGATGACGGCGAGTCGCGGCCGGCAATGGCGCCGCCGCCGGCCGAAGCTTGTCACAGAGCGCCTGACTACTGCTA
GTAGTGATGC---GCGGTCGCTGAAGCCGACTACGGCTACCAGGGGACTACTCGCTGGGACGACGACGAGCTTCTCCGAG
GACGAGGAGGACCTCCTCATCAAGCTGCACGCTTTGCTCGGAAACCGGTATA----TATCTACGTGCCTAAGACTCATGC
ATATATCGATCCTAGCTACGTA-CTAGCTTCTGTATATGTTCTGCTGATGACGAATCACGAATATATCTATCCAGCTGGT
CCATCATCGCCGGGAGGCTGCCTGGGAGGACGGGCGAGGAGGTGGAGGCCCACTGGGGTTCGCCGGCGATGAGGAGGCGC
GCGGCCGGCGGCGCCGATCCCGACAGCCATCGTGTGCTACTGCAGGCTTTGCTAGCCTCGTCACATGATCAACCAACACA
ACCCGGCGAGCATCTGCGGAGGGCGGTGCCAAACCAAGTACGCGACGAGCGCCCCGGTCGTCCTTACGACGACAGTGCAG
TGTCGGACGCCGGAAGCCGCAGAGCCTGCGCATCATCGGACGCCGACAGCAGCTGGTTCCTCGCTGAACTGAACCTGGAG
CTCACCCTGTCTACGCCGAGCAGTGCGTCTACTTAATTTGGAGGGTGTCATATCATCGGTTGATCGGTAATCACCTGGTG
TTTATATATACTGTACTTCGGTCGATGGTTTCTGTACCGTAAGAGACAGTCCTGTTATT---------------------
-------------------------------GTACTATGCATATGCACACTGAAACC----------------------T
ACTATATATGTATGACGCACAAACTAATCCTCACAAGTTTGAATTGATCCCATCACAGCCAGTTCATTACTC--------
---------------------------------------TTCATTTAATGCTCATGCATGTGTTCCTTCAAAAGTTCAGA
TA------TGAACTACTC--------------TTGCTAATACTCCTACCCAATTTTATACCATGCATTAGAGAAGTAGAG
GATGATGATCTTAAAATACTTTACTTTGTGGACCACAC-----TTCTATTTTGAAAGTTCTTTTTATAAATATGATAATC
GTTCATTATATGAAATCCTAAGAACTTTACATG----ATTTATCCAACAGTACTAAAGCTAAAGCCATAGCTTAGAGCAT
CTCCAACAGGCGCCCAAAAAAAGCTCCGCGGACTAAAAATTAGTTTTTTTTGGGTGCCCAACAACTCCAGCAGATGTTAT
AGCGCTAAAAACTTTTGGGCGCGCGCTGAAAAATGCTATCGCGCGCAGCATATTTTGGGCTCCAGATTACGCGCGCTTCA
CAATTTGCACTGTATGCTTTTTAGACGCGCATTTTTAGGCGTATGTTAAAGCAATGTTGGTCCCGGCACACTAAAAGTGC
TAAAGTGGCGTGCTATAATTTTTATTGGGCGCGAGATTTTTGTACGGCCGTTGGAGATGCTCTTAGGTAAGCAATGAAAT
GAAAGACTTACAAAGTTATGTGGCTATAAATAAAGCGCTCACGTTGCACAACCTTGTGTTT-TTTTATTTAGTTCAGTCC
CTGTCTCATTATTAGATAGTAGGTTGTTTAGTTTTCTGTTGTTTCCTTGGTGATCTAGCCGAAACGAGATTTCTAATAAT
GGAAATCGGAGAGGGATATCTCTTTTTTGTCAAACAAAAGTCGAGTCTCCCTATGTTTGTGTGTCTTCTCTACATTTTGT
TAAATAAAGTGTCAAGAGTTACCTTTAGAGGGTGCTTGGATCCAAGGTATTATTTTTAGTCTGAGTAAAAATAGTCTTTT
TTAGAGGCTAAAGTTCCAAGCACCCATGACTAAAGAGAGGCTAGGACTAGTCTTGAGGCTAAATTTTTTTAGTCATATGA
AACCTACTAAAATATGTATTAGCCCTCTCTCTCCTCATTTAATTCCTCTCCTTTAACACATGCGAGTTCTGGATTGGAGG
GTTTGGAGGATAATAAATGCTCAATAACTTGATTTTAGTCTCTTTAGTATTTGGATCCAAGCATGGGTGATGCTAACAAG
TTTTAGTCCCACTACTTTTAGTCATGGGACTAAAACGTATCCAAGCATCCTCTTAGCATGATTAGA-TAGAATATGGTTA
CTAAACAAGTGATTGATGTAGCTTTGATGATCTTGTGGGAATTTTCACAGCTCAATGAATTGGCATAGAAATCTGGTAAC
TATAAGTACAATATGTGTACCTATCAGTCTCTGGGCTACGCAAACT-TTTTGCATGAGCATGAATGGTATATGTGTTGGA
CACTTGGAGCAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--S------S----S----------S------S--------------------------------SS------S
-S-S----------------S-----------S--S-----------------------S----S---S-SSSS------
---------------------SSS----------------------------------S----S-----------S--S-
-S--S-------S-------------------------------------------------------------------
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-------------------------------------------------SS-S-SS-SSSSSSSSSSSSSSSSS------
-----S------------------S-------------------------------------------------------
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-----------SSSSSSSSSSSSSSS------------------------------------------------------
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----------------------S-----------SS---------S----------------------------------
-------------SSSSSSSSSSSS-------------------------------------------------------
----------------------------------S-------------------------S-----------S---S---
S--------------------------------S------------S----------------------S----------
-----------------------------S--------------------SSSSSS--S--------S-SS---------
-----S------SSSSSSS---S----------SS---------------------------------------------
-------------------------------------------S------------------------------------
-----------------S---------------------S----------------------------------------
-----------------S-----SSS-S-----SS----S---SSS----S--SS------------SS-SS--SS-SS-
SSSSS----S------------------S-----S------------------------------S--S-----------
----S--------S----------S---------------------S---------------------------------
----S-----------------S-----S------------SS---S-SSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S--S---S-SSSSSS-S-S-SSSSSSSSSSSSSSSS---
-----S--------SSSSSSS-S-SSSS-SS--------S--S----S-----------SSS--S-------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
-----------S----SSSSSSSSSSSSSSSS----S------------------------S-S----------------
--------------------------------------SSSSS--S--S--------------------------S----
S-----------S----S--S---------S-------------------------------------------------
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-------------------S---------S---------------S---------------S------------------
------------S---------------------------S---------------S-----------------------
---------------SS--------------------------------------------S-------S-S-S------
-S------------------------------------------------------------------------------
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-------------------------------------------------------------S------------------
------------------------------S---S-----------------------S-----S--------S------
----S-SS----
>forward_147
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-----------------------------------------------GTGAGGTAGCTGCGCCTAAT-------------
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>reverse_2270
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-----------------------------TCCAAGTTCGAGTTGAGCCC-------------------------------
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