Multiple sequence alignment - TraesCS3D01G030000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G030000 chr3D 100.000 2837 0 0 1 2837 10824831 10821995 0.000000e+00 5240
1 TraesCS3D01G030000 chr3D 97.915 1055 18 2 1787 2837 10809722 10808668 0.000000e+00 1823
2 TraesCS3D01G030000 chr3D 78.899 218 40 6 828 1039 10837634 10837851 2.950000e-30 143
3 TraesCS3D01G030000 chr3B 86.966 1381 128 27 630 1994 15100649 15099305 0.000000e+00 1506
4 TraesCS3D01G030000 chr3B 86.922 1384 129 27 627 1994 15138530 15139877 0.000000e+00 1506
5 TraesCS3D01G030000 chr3B 88.230 1147 102 19 870 1994 15150108 15151243 0.000000e+00 1339
6 TraesCS3D01G030000 chr3B 86.630 546 55 5 2309 2837 15099307 15098763 3.150000e-164 588
7 TraesCS3D01G030000 chr3B 86.630 546 55 5 2309 2837 15139875 15140419 3.150000e-164 588
8 TraesCS3D01G030000 chr3B 83.829 538 64 12 2309 2828 15151241 15151773 9.130000e-135 490
9 TraesCS3D01G030000 chr3B 83.146 534 66 10 2309 2837 26431905 26431391 1.540000e-127 466
10 TraesCS3D01G030000 chr3B 82.320 543 65 14 2309 2837 15165295 15165820 2.590000e-120 442
11 TraesCS3D01G030000 chr3B 82.222 540 66 10 2309 2837 26059084 26058564 3.360000e-119 438
12 TraesCS3D01G030000 chr3B 82.189 539 67 12 2309 2837 25922960 25922441 1.210000e-118 436
13 TraesCS3D01G030000 chr3B 82.037 540 67 10 2309 2837 26401251 26400731 1.560000e-117 433
14 TraesCS3D01G030000 chr3B 86.400 250 27 3 354 596 15138289 15138538 1.680000e-67 267
15 TraesCS3D01G030000 chr3B 83.951 243 24 8 1697 1925 15165015 15165256 4.760000e-53 219
16 TraesCS3D01G030000 chr3B 85.714 168 16 3 437 596 15100811 15100644 1.350000e-38 171
17 TraesCS3D01G030000 chr1D 85.929 1400 139 34 630 1994 447668492 447667116 0.000000e+00 1441
18 TraesCS3D01G030000 chr1D 94.304 316 18 0 1994 2309 2136822 2136507 4.250000e-133 484
19 TraesCS3D01G030000 chr1D 94.304 316 18 0 1994 2309 9269570 9269885 4.250000e-133 484
20 TraesCS3D01G030000 chr1D 84.043 282 26 10 334 596 447668768 447668487 1.300000e-63 254
21 TraesCS3D01G030000 chrUn 98.062 774 14 1 1787 2559 335936736 335935963 0.000000e+00 1345
22 TraesCS3D01G030000 chrUn 98.601 286 4 0 2552 2837 314623300 314623015 9.070000e-140 507
23 TraesCS3D01G030000 chr3A 90.619 533 39 9 2309 2837 17447853 17448378 0.000000e+00 697
24 TraesCS3D01G030000 chr3A 94.030 67 4 0 1928 1994 17447789 17447855 5.000000e-18 102
25 TraesCS3D01G030000 chr4A 94.062 320 19 0 1990 2309 690117164 690116845 1.180000e-133 486
26 TraesCS3D01G030000 chr7D 94.304 316 18 0 1994 2309 434932307 434932622 4.250000e-133 484
27 TraesCS3D01G030000 chr6B 94.304 316 18 0 1994 2309 548176612 548176927 4.250000e-133 484
28 TraesCS3D01G030000 chr6A 94.304 316 18 0 1994 2309 29625933 29626248 4.250000e-133 484
29 TraesCS3D01G030000 chr2B 94.304 316 18 0 1994 2309 793399080 793399395 4.250000e-133 484


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G030000 chr3D 10821995 10824831 2836 True 5240.0 5240 100.000000 1 2837 1 chr3D.!!$R2 2836
1 TraesCS3D01G030000 chr3D 10808668 10809722 1054 True 1823.0 1823 97.915000 1787 2837 1 chr3D.!!$R1 1050
2 TraesCS3D01G030000 chr3B 15150108 15151773 1665 False 914.5 1339 86.029500 870 2828 2 chr3B.!!$F2 1958
3 TraesCS3D01G030000 chr3B 15138289 15140419 2130 False 787.0 1506 86.650667 354 2837 3 chr3B.!!$F1 2483
4 TraesCS3D01G030000 chr3B 15098763 15100811 2048 True 755.0 1506 86.436667 437 2837 3 chr3B.!!$R5 2400
5 TraesCS3D01G030000 chr3B 26431391 26431905 514 True 466.0 466 83.146000 2309 2837 1 chr3B.!!$R4 528
6 TraesCS3D01G030000 chr3B 26058564 26059084 520 True 438.0 438 82.222000 2309 2837 1 chr3B.!!$R2 528
7 TraesCS3D01G030000 chr3B 25922441 25922960 519 True 436.0 436 82.189000 2309 2837 1 chr3B.!!$R1 528
8 TraesCS3D01G030000 chr3B 26400731 26401251 520 True 433.0 433 82.037000 2309 2837 1 chr3B.!!$R3 528
9 TraesCS3D01G030000 chr3B 15165015 15165820 805 False 330.5 442 83.135500 1697 2837 2 chr3B.!!$F3 1140
10 TraesCS3D01G030000 chr1D 447667116 447668768 1652 True 847.5 1441 84.986000 334 1994 2 chr1D.!!$R2 1660
11 TraesCS3D01G030000 chrUn 335935963 335936736 773 True 1345.0 1345 98.062000 1787 2559 1 chrUn.!!$R2 772
12 TraesCS3D01G030000 chr3A 17447789 17448378 589 False 399.5 697 92.324500 1928 2837 2 chr3A.!!$F1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 618 0.103026 CGCCACATCCGAGAAGATGA 59.897 55.0 8.44 0.0 45.43 2.92 F
970 998 0.107508 CCTGCAATCCATCCGTGTCT 60.108 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1661 1.078426 GTAGTGGCCATGGACGCTT 60.078 57.895 37.69 21.56 41.95 4.68 R
2168 2234 1.648467 CCAAGCGCAAGAACCTAGGC 61.648 60.000 11.47 0.00 43.02 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.622459 GTGGTGTGACACAAGTTGC 57.378 52.632 18.40 0.00 40.99 4.17
26 27 0.808125 GTGGTGTGACACAAGTTGCA 59.192 50.000 18.40 1.91 40.99 4.08
27 28 1.405105 GTGGTGTGACACAAGTTGCAT 59.595 47.619 18.40 0.00 40.99 3.96
28 29 2.616376 GTGGTGTGACACAAGTTGCATA 59.384 45.455 18.40 0.00 40.99 3.14
29 30 2.616376 TGGTGTGACACAAGTTGCATAC 59.384 45.455 18.40 1.82 35.86 2.39
30 31 2.616376 GGTGTGACACAAGTTGCATACA 59.384 45.455 18.40 0.97 35.86 2.29
31 32 3.548014 GGTGTGACACAAGTTGCATACAC 60.548 47.826 18.40 17.78 36.55 2.90
32 33 2.286563 TGTGACACAAGTTGCATACACG 59.713 45.455 5.62 0.00 0.00 4.49
33 34 2.286833 GTGACACAAGTTGCATACACGT 59.713 45.455 1.81 0.00 0.00 4.49
34 35 2.286563 TGACACAAGTTGCATACACGTG 59.713 45.455 15.48 15.48 37.26 4.49
35 36 1.002900 ACACAAGTTGCATACACGTGC 60.003 47.619 17.22 1.31 45.25 5.34
41 42 4.953116 GCATACACGTGCACGATG 57.047 55.556 42.94 33.50 44.43 3.84
42 43 1.348250 GCATACACGTGCACGATGG 59.652 57.895 42.94 30.93 44.43 3.51
43 44 2.005995 CATACACGTGCACGATGGG 58.994 57.895 42.94 28.66 43.02 4.00
44 45 1.153449 ATACACGTGCACGATGGGG 60.153 57.895 42.94 26.42 43.02 4.96
45 46 3.943479 TACACGTGCACGATGGGGC 62.943 63.158 42.94 0.61 43.02 5.80
53 54 4.329545 ACGATGGGGCGTGCAACT 62.330 61.111 0.00 0.00 43.79 3.16
54 55 3.055719 CGATGGGGCGTGCAACTT 61.056 61.111 0.00 0.00 31.75 2.66
55 56 2.568090 GATGGGGCGTGCAACTTG 59.432 61.111 0.00 0.00 31.75 3.16
56 57 2.990967 ATGGGGCGTGCAACTTGG 60.991 61.111 0.00 0.00 31.75 3.61
57 58 3.808218 ATGGGGCGTGCAACTTGGT 62.808 57.895 0.00 0.00 31.75 3.67
58 59 2.281900 GGGGCGTGCAACTTGGTA 60.282 61.111 0.00 0.00 31.75 3.25
59 60 1.899534 GGGGCGTGCAACTTGGTAA 60.900 57.895 0.00 0.00 31.75 2.85
60 61 1.457009 GGGGCGTGCAACTTGGTAAA 61.457 55.000 0.00 0.00 31.75 2.01
61 62 0.318360 GGGCGTGCAACTTGGTAAAC 60.318 55.000 0.00 0.00 31.75 2.01
62 63 0.382515 GGCGTGCAACTTGGTAAACA 59.617 50.000 0.00 0.00 31.75 2.83
63 64 1.202313 GGCGTGCAACTTGGTAAACAA 60.202 47.619 0.00 0.00 37.55 2.83
94 95 4.753516 ATCACGGATGATTTGTAGACCA 57.246 40.909 0.00 0.00 43.40 4.02
95 96 4.123497 TCACGGATGATTTGTAGACCAG 57.877 45.455 0.00 0.00 0.00 4.00
96 97 3.118775 TCACGGATGATTTGTAGACCAGG 60.119 47.826 0.00 0.00 0.00 4.45
97 98 2.838202 ACGGATGATTTGTAGACCAGGT 59.162 45.455 0.00 0.00 0.00 4.00
98 99 3.263425 ACGGATGATTTGTAGACCAGGTT 59.737 43.478 0.00 0.00 0.00 3.50
99 100 4.468510 ACGGATGATTTGTAGACCAGGTTA 59.531 41.667 0.00 0.00 0.00 2.85
100 101 5.046159 ACGGATGATTTGTAGACCAGGTTAA 60.046 40.000 0.00 0.00 0.00 2.01
101 102 5.523916 CGGATGATTTGTAGACCAGGTTAAG 59.476 44.000 0.00 0.00 0.00 1.85
102 103 5.823045 GGATGATTTGTAGACCAGGTTAAGG 59.177 44.000 0.00 0.00 0.00 2.69
103 104 6.352737 GGATGATTTGTAGACCAGGTTAAGGA 60.353 42.308 0.00 0.00 0.00 3.36
104 105 6.442541 TGATTTGTAGACCAGGTTAAGGAA 57.557 37.500 0.00 0.00 0.00 3.36
105 106 6.843752 TGATTTGTAGACCAGGTTAAGGAAA 58.156 36.000 0.00 0.00 0.00 3.13
106 107 7.291566 TGATTTGTAGACCAGGTTAAGGAAAA 58.708 34.615 0.00 0.00 0.00 2.29
107 108 7.447238 TGATTTGTAGACCAGGTTAAGGAAAAG 59.553 37.037 0.00 0.00 0.00 2.27
108 109 5.899631 TGTAGACCAGGTTAAGGAAAAGT 57.100 39.130 0.00 0.00 0.00 2.66
109 110 5.617252 TGTAGACCAGGTTAAGGAAAAGTG 58.383 41.667 0.00 0.00 0.00 3.16
110 111 4.790718 AGACCAGGTTAAGGAAAAGTGT 57.209 40.909 0.00 0.00 0.00 3.55
111 112 4.461198 AGACCAGGTTAAGGAAAAGTGTG 58.539 43.478 0.00 0.00 0.00 3.82
112 113 4.079958 AGACCAGGTTAAGGAAAAGTGTGT 60.080 41.667 0.00 0.00 0.00 3.72
113 114 5.131475 AGACCAGGTTAAGGAAAAGTGTGTA 59.869 40.000 0.00 0.00 0.00 2.90
114 115 5.757988 ACCAGGTTAAGGAAAAGTGTGTAA 58.242 37.500 0.00 0.00 0.00 2.41
115 116 6.370453 ACCAGGTTAAGGAAAAGTGTGTAAT 58.630 36.000 0.00 0.00 0.00 1.89
116 117 6.837048 ACCAGGTTAAGGAAAAGTGTGTAATT 59.163 34.615 0.00 0.00 0.00 1.40
117 118 7.343574 ACCAGGTTAAGGAAAAGTGTGTAATTT 59.656 33.333 0.00 0.00 0.00 1.82
118 119 8.201464 CCAGGTTAAGGAAAAGTGTGTAATTTT 58.799 33.333 0.00 0.00 36.85 1.82
119 120 9.030301 CAGGTTAAGGAAAAGTGTGTAATTTTG 57.970 33.333 0.00 0.00 34.57 2.44
120 121 8.201464 AGGTTAAGGAAAAGTGTGTAATTTTGG 58.799 33.333 0.00 0.00 34.57 3.28
121 122 7.982919 GGTTAAGGAAAAGTGTGTAATTTTGGT 59.017 33.333 0.00 0.00 34.57 3.67
122 123 9.027129 GTTAAGGAAAAGTGTGTAATTTTGGTC 57.973 33.333 0.00 0.00 34.57 4.02
123 124 6.156748 AGGAAAAGTGTGTAATTTTGGTCC 57.843 37.500 0.00 0.00 34.57 4.46
124 125 4.979815 GGAAAAGTGTGTAATTTTGGTCCG 59.020 41.667 0.00 0.00 34.57 4.79
125 126 5.450826 GGAAAAGTGTGTAATTTTGGTCCGT 60.451 40.000 0.00 0.00 34.57 4.69
126 127 4.823790 AAGTGTGTAATTTTGGTCCGTC 57.176 40.909 0.00 0.00 0.00 4.79
127 128 3.811083 AGTGTGTAATTTTGGTCCGTCA 58.189 40.909 0.00 0.00 0.00 4.35
128 129 4.200874 AGTGTGTAATTTTGGTCCGTCAA 58.799 39.130 0.00 0.00 0.00 3.18
129 130 4.035909 AGTGTGTAATTTTGGTCCGTCAAC 59.964 41.667 0.00 0.00 0.00 3.18
130 131 4.035909 GTGTGTAATTTTGGTCCGTCAACT 59.964 41.667 0.00 0.00 0.00 3.16
131 132 4.641094 TGTGTAATTTTGGTCCGTCAACTT 59.359 37.500 0.00 0.00 0.00 2.66
132 133 5.821470 TGTGTAATTTTGGTCCGTCAACTTA 59.179 36.000 0.00 0.00 0.00 2.24
133 134 6.487331 TGTGTAATTTTGGTCCGTCAACTTAT 59.513 34.615 0.00 0.00 0.00 1.73
134 135 7.019418 GTGTAATTTTGGTCCGTCAACTTATC 58.981 38.462 0.00 0.00 0.00 1.75
135 136 6.711194 TGTAATTTTGGTCCGTCAACTTATCA 59.289 34.615 0.00 0.00 0.00 2.15
136 137 5.880054 ATTTTGGTCCGTCAACTTATCAG 57.120 39.130 0.00 0.00 0.00 2.90
137 138 4.610605 TTTGGTCCGTCAACTTATCAGA 57.389 40.909 0.00 0.00 0.00 3.27
138 139 3.587797 TGGTCCGTCAACTTATCAGAC 57.412 47.619 0.00 0.00 0.00 3.51
139 140 2.232941 TGGTCCGTCAACTTATCAGACC 59.767 50.000 0.00 0.00 42.13 3.85
140 141 2.527100 GTCCGTCAACTTATCAGACCG 58.473 52.381 0.00 0.00 0.00 4.79
141 142 2.094854 GTCCGTCAACTTATCAGACCGT 60.095 50.000 0.00 0.00 0.00 4.83
142 143 2.163010 TCCGTCAACTTATCAGACCGTC 59.837 50.000 0.00 0.00 0.00 4.79
143 144 2.174764 CGTCAACTTATCAGACCGTCG 58.825 52.381 0.00 0.00 0.00 5.12
144 145 2.159612 CGTCAACTTATCAGACCGTCGA 60.160 50.000 0.00 0.00 0.00 4.20
145 146 3.668757 CGTCAACTTATCAGACCGTCGAA 60.669 47.826 0.00 0.00 0.00 3.71
146 147 4.232221 GTCAACTTATCAGACCGTCGAAA 58.768 43.478 0.00 0.00 0.00 3.46
147 148 4.089636 GTCAACTTATCAGACCGTCGAAAC 59.910 45.833 0.00 0.00 0.00 2.78
148 149 3.227810 ACTTATCAGACCGTCGAAACC 57.772 47.619 0.00 0.00 0.00 3.27
149 150 2.182825 CTTATCAGACCGTCGAAACCG 58.817 52.381 0.00 0.00 0.00 4.44
150 151 0.179156 TATCAGACCGTCGAAACCGC 60.179 55.000 0.00 0.00 0.00 5.68
151 152 3.467119 CAGACCGTCGAAACCGCG 61.467 66.667 0.00 0.00 0.00 6.46
152 153 3.663176 AGACCGTCGAAACCGCGA 61.663 61.111 8.23 0.00 38.07 5.87
153 154 2.730604 GACCGTCGAAACCGCGAA 60.731 61.111 8.23 0.00 42.55 4.70
154 155 2.048877 ACCGTCGAAACCGCGAAT 60.049 55.556 8.23 0.00 42.55 3.34
155 156 1.620413 GACCGTCGAAACCGCGAATT 61.620 55.000 8.23 0.74 42.55 2.17
156 157 1.223417 ACCGTCGAAACCGCGAATTT 61.223 50.000 8.23 8.01 42.55 1.82
157 158 0.110554 CCGTCGAAACCGCGAATTTT 60.111 50.000 8.23 3.50 42.55 1.82
158 159 1.660896 CCGTCGAAACCGCGAATTTTT 60.661 47.619 8.23 0.55 42.55 1.94
183 184 7.647907 TTTTTATCAGACCGTCTAAGTTCAC 57.352 36.000 0.00 0.00 0.00 3.18
184 185 3.870633 ATCAGACCGTCTAAGTTCACC 57.129 47.619 0.00 0.00 0.00 4.02
185 186 1.891150 TCAGACCGTCTAAGTTCACCC 59.109 52.381 0.00 0.00 0.00 4.61
186 187 1.616865 CAGACCGTCTAAGTTCACCCA 59.383 52.381 0.00 0.00 0.00 4.51
187 188 2.233922 CAGACCGTCTAAGTTCACCCAT 59.766 50.000 0.00 0.00 0.00 4.00
188 189 2.496470 AGACCGTCTAAGTTCACCCATC 59.504 50.000 0.00 0.00 0.00 3.51
189 190 2.232941 GACCGTCTAAGTTCACCCATCA 59.767 50.000 0.00 0.00 0.00 3.07
190 191 2.838202 ACCGTCTAAGTTCACCCATCAT 59.162 45.455 0.00 0.00 0.00 2.45
191 192 3.118738 ACCGTCTAAGTTCACCCATCATC 60.119 47.826 0.00 0.00 0.00 2.92
192 193 3.133003 CCGTCTAAGTTCACCCATCATCT 59.867 47.826 0.00 0.00 0.00 2.90
193 194 4.383118 CCGTCTAAGTTCACCCATCATCTT 60.383 45.833 0.00 0.00 0.00 2.40
194 195 5.163447 CCGTCTAAGTTCACCCATCATCTTA 60.163 44.000 0.00 0.00 0.00 2.10
195 196 6.463049 CCGTCTAAGTTCACCCATCATCTTAT 60.463 42.308 0.00 0.00 0.00 1.73
196 197 6.986817 CGTCTAAGTTCACCCATCATCTTATT 59.013 38.462 0.00 0.00 0.00 1.40
197 198 7.495934 CGTCTAAGTTCACCCATCATCTTATTT 59.504 37.037 0.00 0.00 0.00 1.40
198 199 9.832445 GTCTAAGTTCACCCATCATCTTATTTA 57.168 33.333 0.00 0.00 0.00 1.40
199 200 9.832445 TCTAAGTTCACCCATCATCTTATTTAC 57.168 33.333 0.00 0.00 0.00 2.01
200 201 7.553881 AAGTTCACCCATCATCTTATTTACG 57.446 36.000 0.00 0.00 0.00 3.18
201 202 6.650120 AGTTCACCCATCATCTTATTTACGT 58.350 36.000 0.00 0.00 0.00 3.57
202 203 6.538742 AGTTCACCCATCATCTTATTTACGTG 59.461 38.462 0.00 0.00 0.00 4.49
203 204 5.984725 TCACCCATCATCTTATTTACGTGT 58.015 37.500 0.00 0.00 0.00 4.49
204 205 7.114866 TCACCCATCATCTTATTTACGTGTA 57.885 36.000 0.00 0.00 0.00 2.90
205 206 7.557724 TCACCCATCATCTTATTTACGTGTAA 58.442 34.615 0.00 0.00 0.00 2.41
206 207 8.208224 TCACCCATCATCTTATTTACGTGTAAT 58.792 33.333 0.00 0.24 0.00 1.89
207 208 8.836413 CACCCATCATCTTATTTACGTGTAATT 58.164 33.333 0.00 0.00 0.00 1.40
208 209 9.403583 ACCCATCATCTTATTTACGTGTAATTT 57.596 29.630 0.00 0.00 0.00 1.82
220 221 7.972832 TTACGTGTAATTTTCTCCATCAAGT 57.027 32.000 0.00 0.00 0.00 3.16
221 222 6.241207 ACGTGTAATTTTCTCCATCAAGTG 57.759 37.500 0.00 0.00 0.00 3.16
222 223 5.088739 CGTGTAATTTTCTCCATCAAGTGC 58.911 41.667 0.00 0.00 0.00 4.40
223 224 5.334802 CGTGTAATTTTCTCCATCAAGTGCA 60.335 40.000 0.00 0.00 0.00 4.57
224 225 6.446318 GTGTAATTTTCTCCATCAAGTGCAA 58.554 36.000 0.00 0.00 0.00 4.08
225 226 6.922957 GTGTAATTTTCTCCATCAAGTGCAAA 59.077 34.615 0.00 0.00 0.00 3.68
226 227 7.437862 GTGTAATTTTCTCCATCAAGTGCAAAA 59.562 33.333 0.00 0.00 0.00 2.44
227 228 7.984050 TGTAATTTTCTCCATCAAGTGCAAAAA 59.016 29.630 0.00 0.00 0.00 1.94
247 248 6.928348 AAAAAGGGGTAAATTTAGTCCCTG 57.072 37.500 27.16 0.00 46.47 4.45
248 249 4.603094 AAGGGGTAAATTTAGTCCCTGG 57.397 45.455 27.16 0.00 46.47 4.45
249 250 2.856864 AGGGGTAAATTTAGTCCCTGGG 59.143 50.000 26.42 6.33 45.53 4.45
250 251 2.854337 GGGGTAAATTTAGTCCCTGGGA 59.146 50.000 12.53 12.53 39.80 4.37
251 252 3.465966 GGGGTAAATTTAGTCCCTGGGAT 59.534 47.826 20.40 10.55 39.80 3.85
252 253 4.470602 GGGTAAATTTAGTCCCTGGGATG 58.529 47.826 20.40 0.00 37.18 3.51
253 254 4.079385 GGGTAAATTTAGTCCCTGGGATGT 60.079 45.833 20.40 12.13 37.18 3.06
254 255 5.516044 GGTAAATTTAGTCCCTGGGATGTT 58.484 41.667 20.40 10.43 32.73 2.71
255 256 6.354126 GGGTAAATTTAGTCCCTGGGATGTTA 60.354 42.308 20.40 9.40 37.18 2.41
256 257 7.120716 GGTAAATTTAGTCCCTGGGATGTTAA 58.879 38.462 20.40 14.64 32.73 2.01
257 258 7.284716 GGTAAATTTAGTCCCTGGGATGTTAAG 59.715 40.741 20.40 0.00 32.73 1.85
258 259 4.855298 TTTAGTCCCTGGGATGTTAAGG 57.145 45.455 20.40 0.00 32.73 2.69
262 263 2.143876 CCCTGGGATGTTAAGGGTTG 57.856 55.000 7.01 0.00 44.95 3.77
263 264 1.341976 CCCTGGGATGTTAAGGGTTGG 60.342 57.143 7.01 0.00 44.95 3.77
264 265 1.357761 CCTGGGATGTTAAGGGTTGGT 59.642 52.381 0.00 0.00 0.00 3.67
265 266 2.225267 CCTGGGATGTTAAGGGTTGGTT 60.225 50.000 0.00 0.00 0.00 3.67
266 267 3.010808 CCTGGGATGTTAAGGGTTGGTTA 59.989 47.826 0.00 0.00 0.00 2.85
267 268 4.509482 CCTGGGATGTTAAGGGTTGGTTAA 60.509 45.833 0.00 0.00 0.00 2.01
268 269 5.076057 TGGGATGTTAAGGGTTGGTTAAA 57.924 39.130 0.00 0.00 0.00 1.52
269 270 5.464984 TGGGATGTTAAGGGTTGGTTAAAA 58.535 37.500 0.00 0.00 0.00 1.52
270 271 5.903589 TGGGATGTTAAGGGTTGGTTAAAAA 59.096 36.000 0.00 0.00 0.00 1.94
305 306 9.612066 TGATTATTTGCTGTGATTATCTACACA 57.388 29.630 0.00 0.00 43.31 3.72
306 307 9.869844 GATTATTTGCTGTGATTATCTACACAC 57.130 33.333 0.00 0.00 41.19 3.82
307 308 6.683974 ATTTGCTGTGATTATCTACACACC 57.316 37.500 0.00 0.00 41.19 4.16
308 309 5.420725 TTGCTGTGATTATCTACACACCT 57.579 39.130 0.00 0.00 41.19 4.00
309 310 5.011090 TGCTGTGATTATCTACACACCTC 57.989 43.478 0.00 0.00 41.19 3.85
310 311 4.141937 TGCTGTGATTATCTACACACCTCC 60.142 45.833 0.00 0.00 41.19 4.30
311 312 4.611943 CTGTGATTATCTACACACCTCCG 58.388 47.826 0.00 0.00 41.19 4.63
312 313 4.274978 TGTGATTATCTACACACCTCCGA 58.725 43.478 0.00 0.00 41.19 4.55
313 314 4.097437 TGTGATTATCTACACACCTCCGAC 59.903 45.833 0.00 0.00 41.19 4.79
314 315 3.314357 TGATTATCTACACACCTCCGACG 59.686 47.826 0.00 0.00 0.00 5.12
315 316 2.408271 TATCTACACACCTCCGACGT 57.592 50.000 0.00 0.00 0.00 4.34
316 317 1.093159 ATCTACACACCTCCGACGTC 58.907 55.000 5.18 5.18 0.00 4.34
317 318 0.957395 TCTACACACCTCCGACGTCC 60.957 60.000 10.58 0.00 0.00 4.79
318 319 1.930908 CTACACACCTCCGACGTCCC 61.931 65.000 10.58 0.00 0.00 4.46
319 320 2.416107 TACACACCTCCGACGTCCCT 62.416 60.000 10.58 0.00 0.00 4.20
320 321 2.203596 ACACCTCCGACGTCCCTT 60.204 61.111 10.58 0.00 0.00 3.95
321 322 1.835712 ACACCTCCGACGTCCCTTT 60.836 57.895 10.58 0.00 0.00 3.11
322 323 0.540365 ACACCTCCGACGTCCCTTTA 60.540 55.000 10.58 0.00 0.00 1.85
323 324 0.822164 CACCTCCGACGTCCCTTTAT 59.178 55.000 10.58 0.00 0.00 1.40
324 325 1.206371 CACCTCCGACGTCCCTTTATT 59.794 52.381 10.58 0.00 0.00 1.40
325 326 1.904537 ACCTCCGACGTCCCTTTATTT 59.095 47.619 10.58 0.00 0.00 1.40
326 327 3.099141 ACCTCCGACGTCCCTTTATTTA 58.901 45.455 10.58 0.00 0.00 1.40
327 328 3.708121 ACCTCCGACGTCCCTTTATTTAT 59.292 43.478 10.58 0.00 0.00 1.40
328 329 4.162888 ACCTCCGACGTCCCTTTATTTATT 59.837 41.667 10.58 0.00 0.00 1.40
329 330 5.121105 CCTCCGACGTCCCTTTATTTATTT 58.879 41.667 10.58 0.00 0.00 1.40
330 331 5.235831 CCTCCGACGTCCCTTTATTTATTTC 59.764 44.000 10.58 0.00 0.00 2.17
331 332 5.981174 TCCGACGTCCCTTTATTTATTTCT 58.019 37.500 10.58 0.00 0.00 2.52
332 333 5.813672 TCCGACGTCCCTTTATTTATTTCTG 59.186 40.000 10.58 0.00 0.00 3.02
356 357 5.800438 GCAATCGAGGAGGAAAACAAATTAC 59.200 40.000 0.00 0.00 0.00 1.89
362 363 3.504520 GGAGGAAAACAAATTACAGCGGA 59.495 43.478 0.00 0.00 0.00 5.54
372 381 2.450609 TTACAGCGGACTCTTTGGTC 57.549 50.000 0.00 0.00 35.66 4.02
384 393 1.343142 TCTTTGGTCGAAGTGCTGCTA 59.657 47.619 0.00 0.00 0.00 3.49
434 452 2.224314 GTGGAAGACGAAAGAAGCAAGG 59.776 50.000 0.00 0.00 0.00 3.61
435 453 2.104111 TGGAAGACGAAAGAAGCAAGGA 59.896 45.455 0.00 0.00 0.00 3.36
487 505 0.608640 ACATATTCGATCGGCCTCCC 59.391 55.000 16.41 0.00 0.00 4.30
507 532 2.021457 CCCCAACGTTCATCCCATAAC 58.979 52.381 0.00 0.00 0.00 1.89
508 533 2.356741 CCCCAACGTTCATCCCATAACT 60.357 50.000 0.00 0.00 0.00 2.24
509 534 2.943033 CCCAACGTTCATCCCATAACTC 59.057 50.000 0.00 0.00 0.00 3.01
510 535 3.370527 CCCAACGTTCATCCCATAACTCT 60.371 47.826 0.00 0.00 0.00 3.24
511 536 3.871594 CCAACGTTCATCCCATAACTCTC 59.128 47.826 0.00 0.00 0.00 3.20
517 543 5.112686 GTTCATCCCATAACTCTCTCACAC 58.887 45.833 0.00 0.00 0.00 3.82
521 547 2.353704 CCCATAACTCTCTCACACGCAA 60.354 50.000 0.00 0.00 0.00 4.85
548 574 1.364626 GCCACTCCACTGCAAGATCG 61.365 60.000 0.00 0.00 37.43 3.69
553 579 1.998315 CTCCACTGCAAGATCGAACAG 59.002 52.381 9.49 9.49 37.43 3.16
557 583 1.339438 ACTGCAAGATCGAACAGGCAT 60.339 47.619 10.73 1.55 37.43 4.40
567 593 2.364002 TCGAACAGGCATATCGATGGAA 59.636 45.455 8.54 0.00 40.34 3.53
579 605 0.871722 CGATGGAAAAGAACGCCACA 59.128 50.000 0.00 0.00 33.93 4.17
587 613 0.320374 AAGAACGCCACATCCGAGAA 59.680 50.000 0.00 0.00 0.00 2.87
590 616 0.537188 AACGCCACATCCGAGAAGAT 59.463 50.000 0.00 0.00 0.00 2.40
592 618 0.103026 CGCCACATCCGAGAAGATGA 59.897 55.000 8.44 0.00 45.43 2.92
593 619 1.269988 CGCCACATCCGAGAAGATGAT 60.270 52.381 8.44 0.00 45.43 2.45
594 620 2.411904 GCCACATCCGAGAAGATGATC 58.588 52.381 8.44 0.00 45.43 2.92
595 621 2.224137 GCCACATCCGAGAAGATGATCA 60.224 50.000 8.44 0.00 45.43 2.92
596 622 3.556633 GCCACATCCGAGAAGATGATCAT 60.557 47.826 8.25 8.25 45.43 2.45
597 623 4.244066 CCACATCCGAGAAGATGATCATC 58.756 47.826 25.42 25.42 45.43 2.92
598 624 4.262335 CCACATCCGAGAAGATGATCATCA 60.262 45.833 31.99 14.02 45.43 3.07
599 625 5.295152 CACATCCGAGAAGATGATCATCAA 58.705 41.667 31.99 12.25 45.43 2.57
600 626 5.756833 CACATCCGAGAAGATGATCATCAAA 59.243 40.000 31.99 12.85 45.43 2.69
601 627 5.990386 ACATCCGAGAAGATGATCATCAAAG 59.010 40.000 31.99 19.24 45.43 2.77
602 628 4.375272 TCCGAGAAGATGATCATCAAAGC 58.625 43.478 31.99 19.31 40.22 3.51
603 629 4.124970 CCGAGAAGATGATCATCAAAGCA 58.875 43.478 31.99 0.00 40.22 3.91
604 630 4.211584 CCGAGAAGATGATCATCAAAGCAG 59.788 45.833 31.99 19.39 40.22 4.24
605 631 5.048507 CGAGAAGATGATCATCAAAGCAGA 58.951 41.667 31.99 0.00 40.22 4.26
606 632 5.176039 CGAGAAGATGATCATCAAAGCAGAG 59.824 44.000 31.99 14.53 40.22 3.35
607 633 6.236558 AGAAGATGATCATCAAAGCAGAGA 57.763 37.500 31.99 0.00 40.22 3.10
608 634 6.285224 AGAAGATGATCATCAAAGCAGAGAG 58.715 40.000 31.99 0.00 40.22 3.20
609 635 4.963373 AGATGATCATCAAAGCAGAGAGG 58.037 43.478 31.99 0.00 40.22 3.69
610 636 2.915349 TGATCATCAAAGCAGAGAGGC 58.085 47.619 0.00 0.00 0.00 4.70
611 637 2.220313 GATCATCAAAGCAGAGAGGCC 58.780 52.381 0.00 0.00 0.00 5.19
612 638 0.986527 TCATCAAAGCAGAGAGGCCA 59.013 50.000 5.01 0.00 0.00 5.36
613 639 1.065636 TCATCAAAGCAGAGAGGCCAG 60.066 52.381 5.01 0.00 0.00 4.85
614 640 0.255318 ATCAAAGCAGAGAGGCCAGG 59.745 55.000 5.01 0.00 0.00 4.45
615 641 2.045131 CAAAGCAGAGAGGCCAGGC 61.045 63.158 5.01 1.26 0.00 4.85
616 642 3.618780 AAAGCAGAGAGGCCAGGCG 62.619 63.158 5.01 0.00 0.00 5.52
653 679 2.674033 TGTGGACGTCGATCCGGT 60.674 61.111 9.92 0.00 42.24 5.28
671 697 4.440145 GGCTCTGAATTGCCCCAA 57.560 55.556 0.00 0.00 43.11 4.12
696 722 2.362632 CGTCCCCTCGAACCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
728 754 6.037786 GGTATATATGTACCTCTGCTTGCA 57.962 41.667 18.72 0.00 40.79 4.08
729 755 6.102663 GGTATATATGTACCTCTGCTTGCAG 58.897 44.000 18.72 15.74 40.79 4.41
730 756 2.315925 TATGTACCTCTGCTTGCAGC 57.684 50.000 16.91 0.00 42.82 5.25
731 757 9.618563 GGTATATATGTACCTCTGCTTGCAGCA 62.619 44.444 18.72 9.53 43.63 4.41
740 766 2.437850 GCTTGCAGCAAATTGTCCG 58.562 52.632 9.65 0.00 41.89 4.79
742 768 1.411394 CTTGCAGCAAATTGTCCGTG 58.589 50.000 9.65 0.00 0.00 4.94
744 770 1.734117 GCAGCAAATTGTCCGTGCC 60.734 57.895 0.00 0.00 39.13 5.01
745 771 1.959085 CAGCAAATTGTCCGTGCCT 59.041 52.632 0.00 0.00 39.13 4.75
746 772 1.164411 CAGCAAATTGTCCGTGCCTA 58.836 50.000 0.00 0.00 39.13 3.93
748 774 2.017049 AGCAAATTGTCCGTGCCTATC 58.983 47.619 0.00 0.00 39.13 2.08
749 775 1.742831 GCAAATTGTCCGTGCCTATCA 59.257 47.619 0.00 0.00 31.94 2.15
751 777 3.548818 GCAAATTGTCCGTGCCTATCATC 60.549 47.826 0.00 0.00 31.94 2.92
753 779 0.821517 TTGTCCGTGCCTATCATCGT 59.178 50.000 0.00 0.00 0.00 3.73
754 780 1.682740 TGTCCGTGCCTATCATCGTA 58.317 50.000 0.00 0.00 0.00 3.43
755 781 1.607148 TGTCCGTGCCTATCATCGTAG 59.393 52.381 0.00 0.00 0.00 3.51
756 782 0.596577 TCCGTGCCTATCATCGTAGC 59.403 55.000 0.00 0.00 0.00 3.58
758 784 1.810755 CCGTGCCTATCATCGTAGCTA 59.189 52.381 0.00 0.00 0.00 3.32
759 785 2.159503 CCGTGCCTATCATCGTAGCTAG 60.160 54.545 0.00 0.00 0.00 3.42
760 786 2.742589 CGTGCCTATCATCGTAGCTAGA 59.257 50.000 0.00 0.00 0.00 2.43
761 787 3.188667 CGTGCCTATCATCGTAGCTAGAA 59.811 47.826 0.00 0.00 0.00 2.10
762 788 4.670478 CGTGCCTATCATCGTAGCTAGAAG 60.670 50.000 0.00 0.00 0.00 2.85
763 789 4.456222 GTGCCTATCATCGTAGCTAGAAGA 59.544 45.833 0.00 0.00 0.00 2.87
764 790 5.124776 GTGCCTATCATCGTAGCTAGAAGAT 59.875 44.000 0.00 5.12 31.96 2.40
765 791 5.355630 TGCCTATCATCGTAGCTAGAAGATC 59.644 44.000 11.59 0.00 30.14 2.75
767 793 6.238374 GCCTATCATCGTAGCTAGAAGATCTC 60.238 46.154 11.59 0.00 30.14 2.75
775 801 7.149973 TCGTAGCTAGAAGATCTCTCTAACTC 58.850 42.308 15.26 2.02 35.41 3.01
784 810 5.347342 AGATCTCTCTAACTCGCACAATTG 58.653 41.667 3.24 3.24 0.00 2.32
785 813 4.521130 TCTCTCTAACTCGCACAATTGT 57.479 40.909 4.92 4.92 0.00 2.71
786 814 4.486090 TCTCTCTAACTCGCACAATTGTC 58.514 43.478 8.48 3.15 0.00 3.18
792 820 0.163788 CTCGCACAATTGTCCACGTC 59.836 55.000 8.48 0.00 0.00 4.34
868 896 1.376037 CTCCCGGACAAGGACAAGC 60.376 63.158 0.73 0.00 0.00 4.01
949 977 4.473520 GCTTGGCCCTAGAGCGCA 62.474 66.667 11.47 0.00 0.00 6.09
961 989 1.820906 GAGCGCATCCTGCAATCCA 60.821 57.895 11.47 0.00 45.36 3.41
970 998 0.107508 CCTGCAATCCATCCGTGTCT 60.108 55.000 0.00 0.00 0.00 3.41
976 1004 0.977627 ATCCATCCGTGTCTCCTGCA 60.978 55.000 0.00 0.00 0.00 4.41
1051 1079 3.699671 CGTGCGCCGTATCATCAA 58.300 55.556 4.18 0.00 0.00 2.57
1138 1166 2.632602 TTTGCCCAAGGTTCTGCCGA 62.633 55.000 0.00 0.00 43.70 5.54
1143 1171 1.376037 CAAGGTTCTGCCGACCTCC 60.376 63.158 3.56 0.00 46.60 4.30
1168 1196 2.261172 TAGCGTCACCGTCACCATCG 62.261 60.000 0.00 0.00 36.15 3.84
1187 1215 2.102357 CGGTGATGACGTCGGGAG 59.898 66.667 11.62 0.00 0.00 4.30
1230 1258 3.206150 CAAGGGATCAATGGTAAGACGG 58.794 50.000 0.00 0.00 0.00 4.79
1245 1273 4.258932 CGGGCGCCAAAAACGTGT 62.259 61.111 30.85 0.00 0.00 4.49
1256 1284 4.318689 GCCAAAAACGTGTGGAATTTGATG 60.319 41.667 15.42 0.00 37.03 3.07
1266 1294 4.021280 TGTGGAATTTGATGTGGGTGATTG 60.021 41.667 0.00 0.00 0.00 2.67
1273 1301 9.520204 GAATTTGATGTGGGTGATTGTTATAAG 57.480 33.333 0.00 0.00 0.00 1.73
1274 1302 6.449635 TTGATGTGGGTGATTGTTATAAGC 57.550 37.500 0.00 0.00 0.00 3.09
1275 1303 5.504853 TGATGTGGGTGATTGTTATAAGCA 58.495 37.500 0.00 0.00 0.00 3.91
1281 1314 5.756347 TGGGTGATTGTTATAAGCATACGTC 59.244 40.000 0.00 0.00 0.00 4.34
1311 1345 0.108138 CAGGGATCGTTGGTGAGGAC 60.108 60.000 0.00 0.00 0.00 3.85
1397 1431 2.680352 AGGTCATCGTCCGCCACT 60.680 61.111 0.00 0.00 0.00 4.00
1399 1433 2.509336 GTCATCGTCCGCCACTGG 60.509 66.667 0.00 0.00 0.00 4.00
1560 1599 5.138276 ACTAGTGTTGGTCTCTCTGTTACA 58.862 41.667 0.00 0.00 0.00 2.41
1567 1606 3.260884 TGGTCTCTCTGTTACATGAACCC 59.739 47.826 0.00 0.00 37.22 4.11
1659 1700 2.817258 CGGCCAATTCAAGGACTTTGTA 59.183 45.455 2.24 0.00 38.01 2.41
1767 1808 2.719376 CCCCGGTGGCAAGATTATG 58.281 57.895 0.00 0.00 0.00 1.90
1785 1826 4.005472 GGCTTCCATGCGCGATCG 62.005 66.667 12.10 11.69 39.07 3.69
1946 2012 1.341531 ACAAACAGACTGAGTCCCTCG 59.658 52.381 10.08 0.00 32.35 4.63
2122 2188 9.370126 GCATACTTTATTTAATGAGTTAGCACG 57.630 33.333 2.18 0.00 0.00 5.34
2168 2234 8.379902 GTCAAGTTGTTTCATTTAAGTGGTTTG 58.620 33.333 2.11 0.00 0.00 2.93
2244 2310 1.824852 CCCTCCTTAAATGTTGTGCCC 59.175 52.381 0.00 0.00 0.00 5.36
2515 2584 3.545078 GCTTATTTCAAGACTTGCATGCG 59.455 43.478 14.09 1.59 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.799564 ACTTGTGTCACACCACATTTTT 57.200 36.364 4.80 0.00 44.32 1.94
2 3 4.493547 CAACTTGTGTCACACCACATTTT 58.506 39.130 4.80 0.00 44.32 1.82
3 4 3.675775 GCAACTTGTGTCACACCACATTT 60.676 43.478 4.80 0.00 44.32 2.32
4 5 2.159254 GCAACTTGTGTCACACCACATT 60.159 45.455 4.80 0.00 44.32 2.71
5 6 1.405105 GCAACTTGTGTCACACCACAT 59.595 47.619 4.80 0.00 44.32 3.21
6 7 0.808125 GCAACTTGTGTCACACCACA 59.192 50.000 4.80 0.00 43.32 4.17
7 8 0.808125 TGCAACTTGTGTCACACCAC 59.192 50.000 4.80 0.00 32.73 4.16
8 9 1.761449 ATGCAACTTGTGTCACACCA 58.239 45.000 4.80 0.00 32.73 4.17
9 10 2.616376 TGTATGCAACTTGTGTCACACC 59.384 45.455 4.80 0.00 32.73 4.16
10 11 3.617669 GTGTATGCAACTTGTGTCACAC 58.382 45.455 4.80 0.00 32.22 3.82
11 12 2.286563 CGTGTATGCAACTTGTGTCACA 59.713 45.455 0.18 0.18 0.00 3.58
12 13 2.286833 ACGTGTATGCAACTTGTGTCAC 59.713 45.455 0.00 0.00 0.00 3.67
13 14 2.286563 CACGTGTATGCAACTTGTGTCA 59.713 45.455 7.58 0.00 32.58 3.58
14 15 2.903678 CACGTGTATGCAACTTGTGTC 58.096 47.619 7.58 0.00 32.58 3.67
15 16 1.002900 GCACGTGTATGCAACTTGTGT 60.003 47.619 18.38 2.34 45.39 3.72
16 17 1.673760 GCACGTGTATGCAACTTGTG 58.326 50.000 18.38 5.36 45.39 3.33
24 25 1.348250 CCATCGTGCACGTGTATGC 59.652 57.895 35.74 4.85 46.32 3.14
25 26 1.428370 CCCCATCGTGCACGTGTATG 61.428 60.000 35.74 29.54 40.80 2.39
26 27 1.153449 CCCCATCGTGCACGTGTAT 60.153 57.895 35.74 21.28 40.80 2.29
27 28 2.263227 CCCCATCGTGCACGTGTA 59.737 61.111 35.74 19.91 40.80 2.90
36 37 3.842925 AAGTTGCACGCCCCATCGT 62.843 57.895 0.00 0.00 44.35 3.73
37 38 3.055719 AAGTTGCACGCCCCATCG 61.056 61.111 0.00 0.00 0.00 3.84
38 39 2.568090 CAAGTTGCACGCCCCATC 59.432 61.111 0.00 0.00 0.00 3.51
39 40 2.419011 TACCAAGTTGCACGCCCCAT 62.419 55.000 0.00 0.00 0.00 4.00
40 41 2.626255 TTACCAAGTTGCACGCCCCA 62.626 55.000 0.00 0.00 0.00 4.96
41 42 1.457009 TTTACCAAGTTGCACGCCCC 61.457 55.000 0.00 0.00 0.00 5.80
42 43 0.318360 GTTTACCAAGTTGCACGCCC 60.318 55.000 0.00 0.00 0.00 6.13
43 44 0.382515 TGTTTACCAAGTTGCACGCC 59.617 50.000 0.00 0.00 0.00 5.68
44 45 2.116366 CTTGTTTACCAAGTTGCACGC 58.884 47.619 0.00 0.00 44.64 5.34
73 74 4.443457 CCTGGTCTACAAATCATCCGTGAT 60.443 45.833 0.00 0.00 46.91 3.06
74 75 3.118775 CCTGGTCTACAAATCATCCGTGA 60.119 47.826 0.00 0.00 39.04 4.35
75 76 3.198068 CCTGGTCTACAAATCATCCGTG 58.802 50.000 0.00 0.00 0.00 4.94
76 77 2.838202 ACCTGGTCTACAAATCATCCGT 59.162 45.455 0.00 0.00 0.00 4.69
77 78 3.543680 ACCTGGTCTACAAATCATCCG 57.456 47.619 0.00 0.00 0.00 4.18
78 79 5.823045 CCTTAACCTGGTCTACAAATCATCC 59.177 44.000 0.00 0.00 0.00 3.51
79 80 6.650120 TCCTTAACCTGGTCTACAAATCATC 58.350 40.000 0.00 0.00 0.00 2.92
80 81 6.636454 TCCTTAACCTGGTCTACAAATCAT 57.364 37.500 0.00 0.00 0.00 2.45
81 82 6.442541 TTCCTTAACCTGGTCTACAAATCA 57.557 37.500 0.00 0.00 0.00 2.57
82 83 7.447545 ACTTTTCCTTAACCTGGTCTACAAATC 59.552 37.037 0.00 0.00 0.00 2.17
83 84 7.230712 CACTTTTCCTTAACCTGGTCTACAAAT 59.769 37.037 0.00 0.00 0.00 2.32
84 85 6.544564 CACTTTTCCTTAACCTGGTCTACAAA 59.455 38.462 0.00 0.00 0.00 2.83
85 86 6.059484 CACTTTTCCTTAACCTGGTCTACAA 58.941 40.000 0.00 0.00 0.00 2.41
86 87 5.131475 ACACTTTTCCTTAACCTGGTCTACA 59.869 40.000 0.00 0.00 0.00 2.74
87 88 5.469084 CACACTTTTCCTTAACCTGGTCTAC 59.531 44.000 0.00 0.00 0.00 2.59
88 89 5.131475 ACACACTTTTCCTTAACCTGGTCTA 59.869 40.000 0.00 0.00 0.00 2.59
89 90 4.079958 ACACACTTTTCCTTAACCTGGTCT 60.080 41.667 0.00 0.00 0.00 3.85
90 91 4.204799 ACACACTTTTCCTTAACCTGGTC 58.795 43.478 0.00 0.00 0.00 4.02
91 92 4.245251 ACACACTTTTCCTTAACCTGGT 57.755 40.909 0.00 0.00 0.00 4.00
92 93 6.894339 ATTACACACTTTTCCTTAACCTGG 57.106 37.500 0.00 0.00 0.00 4.45
93 94 9.030301 CAAAATTACACACTTTTCCTTAACCTG 57.970 33.333 0.00 0.00 0.00 4.00
94 95 8.201464 CCAAAATTACACACTTTTCCTTAACCT 58.799 33.333 0.00 0.00 0.00 3.50
95 96 7.982919 ACCAAAATTACACACTTTTCCTTAACC 59.017 33.333 0.00 0.00 0.00 2.85
96 97 8.936070 ACCAAAATTACACACTTTTCCTTAAC 57.064 30.769 0.00 0.00 0.00 2.01
97 98 8.198778 GGACCAAAATTACACACTTTTCCTTAA 58.801 33.333 0.00 0.00 0.00 1.85
98 99 7.468906 CGGACCAAAATTACACACTTTTCCTTA 60.469 37.037 0.00 0.00 0.00 2.69
99 100 6.578944 GGACCAAAATTACACACTTTTCCTT 58.421 36.000 0.00 0.00 0.00 3.36
100 101 5.221165 CGGACCAAAATTACACACTTTTCCT 60.221 40.000 0.00 0.00 0.00 3.36
101 102 4.979815 CGGACCAAAATTACACACTTTTCC 59.020 41.667 0.00 0.00 0.00 3.13
102 103 5.584442 ACGGACCAAAATTACACACTTTTC 58.416 37.500 0.00 0.00 0.00 2.29
103 104 5.125739 TGACGGACCAAAATTACACACTTTT 59.874 36.000 0.00 0.00 0.00 2.27
104 105 4.641094 TGACGGACCAAAATTACACACTTT 59.359 37.500 0.00 0.00 0.00 2.66
105 106 4.200874 TGACGGACCAAAATTACACACTT 58.799 39.130 0.00 0.00 0.00 3.16
106 107 3.811083 TGACGGACCAAAATTACACACT 58.189 40.909 0.00 0.00 0.00 3.55
107 108 4.035909 AGTTGACGGACCAAAATTACACAC 59.964 41.667 0.00 0.00 0.00 3.82
108 109 4.200874 AGTTGACGGACCAAAATTACACA 58.799 39.130 0.00 0.00 0.00 3.72
109 110 4.823790 AGTTGACGGACCAAAATTACAC 57.176 40.909 0.00 0.00 0.00 2.90
110 111 6.711194 TGATAAGTTGACGGACCAAAATTACA 59.289 34.615 0.00 0.00 0.00 2.41
111 112 7.118680 TCTGATAAGTTGACGGACCAAAATTAC 59.881 37.037 0.00 0.00 0.00 1.89
112 113 7.118680 GTCTGATAAGTTGACGGACCAAAATTA 59.881 37.037 10.18 0.00 34.90 1.40
113 114 6.001460 TCTGATAAGTTGACGGACCAAAATT 58.999 36.000 0.00 0.00 0.00 1.82
114 115 5.411669 GTCTGATAAGTTGACGGACCAAAAT 59.588 40.000 10.18 0.00 34.90 1.82
115 116 4.753107 GTCTGATAAGTTGACGGACCAAAA 59.247 41.667 10.18 0.00 34.90 2.44
116 117 4.312443 GTCTGATAAGTTGACGGACCAAA 58.688 43.478 10.18 0.00 34.90 3.28
117 118 3.921677 GTCTGATAAGTTGACGGACCAA 58.078 45.455 10.18 0.00 34.90 3.67
118 119 3.587797 GTCTGATAAGTTGACGGACCA 57.412 47.619 10.18 0.00 34.90 4.02
120 121 2.094854 ACGGTCTGATAAGTTGACGGAC 60.095 50.000 11.93 11.93 38.66 4.79
121 122 2.163010 GACGGTCTGATAAGTTGACGGA 59.837 50.000 0.00 0.00 35.78 4.69
122 123 2.527100 GACGGTCTGATAAGTTGACGG 58.473 52.381 0.00 0.00 37.17 4.79
123 124 2.159612 TCGACGGTCTGATAAGTTGACG 60.160 50.000 6.57 0.00 0.00 4.35
124 125 3.482722 TCGACGGTCTGATAAGTTGAC 57.517 47.619 6.57 0.00 0.00 3.18
125 126 4.232221 GTTTCGACGGTCTGATAAGTTGA 58.768 43.478 6.57 0.00 0.00 3.18
126 127 3.367025 GGTTTCGACGGTCTGATAAGTTG 59.633 47.826 6.57 0.00 0.00 3.16
127 128 3.582780 GGTTTCGACGGTCTGATAAGTT 58.417 45.455 6.57 0.00 0.00 2.66
128 129 2.415090 CGGTTTCGACGGTCTGATAAGT 60.415 50.000 6.57 0.00 39.00 2.24
129 130 2.182825 CGGTTTCGACGGTCTGATAAG 58.817 52.381 6.57 0.00 39.00 1.73
130 131 1.733389 GCGGTTTCGACGGTCTGATAA 60.733 52.381 6.57 1.56 39.00 1.75
131 132 0.179156 GCGGTTTCGACGGTCTGATA 60.179 55.000 6.57 0.00 39.00 2.15
132 133 1.445582 GCGGTTTCGACGGTCTGAT 60.446 57.895 6.57 0.00 39.00 2.90
133 134 2.049802 GCGGTTTCGACGGTCTGA 60.050 61.111 6.57 2.78 39.00 3.27
134 135 3.467119 CGCGGTTTCGACGGTCTG 61.467 66.667 6.57 0.31 39.00 3.51
135 136 2.482296 ATTCGCGGTTTCGACGGTCT 62.482 55.000 6.13 0.00 38.30 3.85
136 137 1.620413 AATTCGCGGTTTCGACGGTC 61.620 55.000 6.13 0.00 38.30 4.79
137 138 1.223417 AAATTCGCGGTTTCGACGGT 61.223 50.000 6.13 0.00 38.30 4.83
138 139 0.110554 AAAATTCGCGGTTTCGACGG 60.111 50.000 6.13 0.00 38.30 4.79
139 140 1.665766 AAAAATTCGCGGTTTCGACG 58.334 45.000 6.13 0.00 38.30 5.12
159 160 6.647895 GGTGAACTTAGACGGTCTGATAAAAA 59.352 38.462 20.58 4.88 0.00 1.94
160 161 6.161381 GGTGAACTTAGACGGTCTGATAAAA 58.839 40.000 20.58 5.59 0.00 1.52
161 162 5.337009 GGGTGAACTTAGACGGTCTGATAAA 60.337 44.000 20.58 5.95 0.00 1.40
162 163 4.159135 GGGTGAACTTAGACGGTCTGATAA 59.841 45.833 20.58 6.31 0.00 1.75
163 164 3.698040 GGGTGAACTTAGACGGTCTGATA 59.302 47.826 20.58 5.26 0.00 2.15
164 165 2.496470 GGGTGAACTTAGACGGTCTGAT 59.504 50.000 20.58 3.03 0.00 2.90
165 166 1.891150 GGGTGAACTTAGACGGTCTGA 59.109 52.381 20.58 11.62 0.00 3.27
166 167 1.616865 TGGGTGAACTTAGACGGTCTG 59.383 52.381 20.58 7.39 0.00 3.51
167 168 2.005370 TGGGTGAACTTAGACGGTCT 57.995 50.000 15.95 15.95 0.00 3.85
168 169 2.232941 TGATGGGTGAACTTAGACGGTC 59.767 50.000 0.00 0.00 0.00 4.79
169 170 2.253610 TGATGGGTGAACTTAGACGGT 58.746 47.619 0.00 0.00 0.00 4.83
170 171 3.133003 AGATGATGGGTGAACTTAGACGG 59.867 47.826 0.00 0.00 0.00 4.79
171 172 4.392921 AGATGATGGGTGAACTTAGACG 57.607 45.455 0.00 0.00 0.00 4.18
172 173 8.738645 AAATAAGATGATGGGTGAACTTAGAC 57.261 34.615 0.00 0.00 0.00 2.59
173 174 9.832445 GTAAATAAGATGATGGGTGAACTTAGA 57.168 33.333 0.00 0.00 0.00 2.10
174 175 8.765219 CGTAAATAAGATGATGGGTGAACTTAG 58.235 37.037 0.00 0.00 0.00 2.18
175 176 8.262227 ACGTAAATAAGATGATGGGTGAACTTA 58.738 33.333 0.00 0.00 0.00 2.24
176 177 7.065803 CACGTAAATAAGATGATGGGTGAACTT 59.934 37.037 0.00 0.00 0.00 2.66
177 178 6.538742 CACGTAAATAAGATGATGGGTGAACT 59.461 38.462 0.00 0.00 0.00 3.01
178 179 6.315393 ACACGTAAATAAGATGATGGGTGAAC 59.685 38.462 0.00 0.00 0.00 3.18
179 180 6.411376 ACACGTAAATAAGATGATGGGTGAA 58.589 36.000 0.00 0.00 0.00 3.18
180 181 5.984725 ACACGTAAATAAGATGATGGGTGA 58.015 37.500 0.00 0.00 0.00 4.02
181 182 7.780008 TTACACGTAAATAAGATGATGGGTG 57.220 36.000 0.00 0.00 0.00 4.61
182 183 8.974060 AATTACACGTAAATAAGATGATGGGT 57.026 30.769 0.00 0.00 0.00 4.51
194 195 9.010029 ACTTGATGGAGAAAATTACACGTAAAT 57.990 29.630 0.00 0.00 0.00 1.40
195 196 8.286800 CACTTGATGGAGAAAATTACACGTAAA 58.713 33.333 0.00 0.00 0.00 2.01
196 197 7.572353 GCACTTGATGGAGAAAATTACACGTAA 60.572 37.037 0.00 0.00 0.00 3.18
197 198 6.128391 GCACTTGATGGAGAAAATTACACGTA 60.128 38.462 0.00 0.00 0.00 3.57
198 199 5.334879 GCACTTGATGGAGAAAATTACACGT 60.335 40.000 0.00 0.00 0.00 4.49
199 200 5.088739 GCACTTGATGGAGAAAATTACACG 58.911 41.667 0.00 0.00 0.00 4.49
200 201 6.012658 TGCACTTGATGGAGAAAATTACAC 57.987 37.500 0.00 0.00 0.00 2.90
201 202 6.647334 TTGCACTTGATGGAGAAAATTACA 57.353 33.333 0.00 0.00 0.00 2.41
202 203 7.945033 TTTTGCACTTGATGGAGAAAATTAC 57.055 32.000 0.00 0.00 0.00 1.89
224 225 5.783360 CCAGGGACTAAATTTACCCCTTTTT 59.217 40.000 22.19 7.31 44.60 1.94
225 226 5.338632 CCAGGGACTAAATTTACCCCTTTT 58.661 41.667 22.19 7.57 44.60 2.27
226 227 4.264668 CCCAGGGACTAAATTTACCCCTTT 60.265 45.833 22.19 8.09 44.60 3.11
227 228 3.271225 CCCAGGGACTAAATTTACCCCTT 59.729 47.826 22.19 9.26 44.60 3.95
229 230 2.854337 TCCCAGGGACTAAATTTACCCC 59.146 50.000 16.64 17.06 42.97 4.95
230 231 4.079385 ACATCCCAGGGACTAAATTTACCC 60.079 45.833 11.70 13.67 42.36 3.69
231 232 5.125367 ACATCCCAGGGACTAAATTTACC 57.875 43.478 11.70 0.00 36.02 2.85
232 233 7.284716 CCTTAACATCCCAGGGACTAAATTTAC 59.715 40.741 11.70 0.00 36.02 2.01
233 234 7.351166 CCTTAACATCCCAGGGACTAAATTTA 58.649 38.462 11.70 0.00 36.02 1.40
234 235 6.194967 CCTTAACATCCCAGGGACTAAATTT 58.805 40.000 11.70 0.35 36.02 1.82
235 236 5.766590 CCTTAACATCCCAGGGACTAAATT 58.233 41.667 11.70 3.57 36.02 1.82
236 237 5.388599 CCTTAACATCCCAGGGACTAAAT 57.611 43.478 11.70 0.00 36.02 1.40
237 238 4.855298 CCTTAACATCCCAGGGACTAAA 57.145 45.455 11.70 2.19 36.02 1.85
244 245 1.357761 ACCAACCCTTAACATCCCAGG 59.642 52.381 0.00 0.00 0.00 4.45
245 246 2.899303 ACCAACCCTTAACATCCCAG 57.101 50.000 0.00 0.00 0.00 4.45
246 247 4.743705 TTAACCAACCCTTAACATCCCA 57.256 40.909 0.00 0.00 0.00 4.37
247 248 6.422344 TTTTTAACCAACCCTTAACATCCC 57.578 37.500 0.00 0.00 0.00 3.85
279 280 9.612066 TGTGTAGATAATCACAGCAAATAATCA 57.388 29.630 0.00 0.00 39.23 2.57
280 281 9.869844 GTGTGTAGATAATCACAGCAAATAATC 57.130 33.333 0.00 0.00 43.67 1.75
289 290 4.338400 TCGGAGGTGTGTAGATAATCACAG 59.662 45.833 0.00 0.00 43.67 3.66
290 291 4.097437 GTCGGAGGTGTGTAGATAATCACA 59.903 45.833 0.00 0.00 41.37 3.58
291 292 4.608951 GTCGGAGGTGTGTAGATAATCAC 58.391 47.826 0.00 0.00 35.43 3.06
292 293 3.314357 CGTCGGAGGTGTGTAGATAATCA 59.686 47.826 0.00 0.00 0.00 2.57
293 294 3.314635 ACGTCGGAGGTGTGTAGATAATC 59.685 47.826 2.02 0.00 0.00 1.75
294 295 3.285484 ACGTCGGAGGTGTGTAGATAAT 58.715 45.455 2.02 0.00 0.00 1.28
295 296 2.679837 GACGTCGGAGGTGTGTAGATAA 59.320 50.000 8.23 0.00 0.00 1.75
296 297 2.283298 GACGTCGGAGGTGTGTAGATA 58.717 52.381 8.23 0.00 0.00 1.98
297 298 1.093159 GACGTCGGAGGTGTGTAGAT 58.907 55.000 8.23 0.00 0.00 1.98
298 299 0.957395 GGACGTCGGAGGTGTGTAGA 60.957 60.000 9.92 0.00 0.00 2.59
299 300 1.505353 GGACGTCGGAGGTGTGTAG 59.495 63.158 9.92 0.00 0.00 2.74
300 301 1.973281 GGGACGTCGGAGGTGTGTA 60.973 63.158 9.92 0.00 0.00 2.90
301 302 3.300765 GGGACGTCGGAGGTGTGT 61.301 66.667 9.92 0.00 0.00 3.72
302 303 2.095978 AAAGGGACGTCGGAGGTGTG 62.096 60.000 9.92 0.00 0.00 3.82
303 304 0.540365 TAAAGGGACGTCGGAGGTGT 60.540 55.000 9.92 0.00 0.00 4.16
304 305 0.822164 ATAAAGGGACGTCGGAGGTG 59.178 55.000 9.92 0.00 0.00 4.00
305 306 1.565067 AATAAAGGGACGTCGGAGGT 58.435 50.000 9.92 2.51 0.00 3.85
306 307 2.685850 AAATAAAGGGACGTCGGAGG 57.314 50.000 9.92 0.00 0.00 4.30
307 308 6.018994 CAGAAATAAATAAAGGGACGTCGGAG 60.019 42.308 9.92 0.00 0.00 4.63
308 309 5.813672 CAGAAATAAATAAAGGGACGTCGGA 59.186 40.000 9.92 0.00 0.00 4.55
309 310 5.503520 GCAGAAATAAATAAAGGGACGTCGG 60.504 44.000 9.92 0.00 0.00 4.79
310 311 5.064198 TGCAGAAATAAATAAAGGGACGTCG 59.936 40.000 9.92 0.00 0.00 5.12
311 312 6.431198 TGCAGAAATAAATAAAGGGACGTC 57.569 37.500 7.13 7.13 0.00 4.34
312 313 6.827586 TTGCAGAAATAAATAAAGGGACGT 57.172 33.333 0.00 0.00 0.00 4.34
313 314 6.632834 CGATTGCAGAAATAAATAAAGGGACG 59.367 38.462 0.00 0.00 0.00 4.79
314 315 7.703328 TCGATTGCAGAAATAAATAAAGGGAC 58.297 34.615 0.00 0.00 0.00 4.46
315 316 7.013274 CCTCGATTGCAGAAATAAATAAAGGGA 59.987 37.037 0.00 0.00 0.00 4.20
316 317 7.013274 TCCTCGATTGCAGAAATAAATAAAGGG 59.987 37.037 0.00 0.00 0.00 3.95
317 318 7.930217 TCCTCGATTGCAGAAATAAATAAAGG 58.070 34.615 0.00 0.00 0.00 3.11
318 319 8.072567 CCTCCTCGATTGCAGAAATAAATAAAG 58.927 37.037 0.00 0.00 0.00 1.85
319 320 7.773224 TCCTCCTCGATTGCAGAAATAAATAAA 59.227 33.333 0.00 0.00 0.00 1.40
320 321 7.279615 TCCTCCTCGATTGCAGAAATAAATAA 58.720 34.615 0.00 0.00 0.00 1.40
321 322 6.826668 TCCTCCTCGATTGCAGAAATAAATA 58.173 36.000 0.00 0.00 0.00 1.40
322 323 5.684704 TCCTCCTCGATTGCAGAAATAAAT 58.315 37.500 0.00 0.00 0.00 1.40
323 324 5.097742 TCCTCCTCGATTGCAGAAATAAA 57.902 39.130 0.00 0.00 0.00 1.40
324 325 4.753516 TCCTCCTCGATTGCAGAAATAA 57.246 40.909 0.00 0.00 0.00 1.40
325 326 4.753516 TTCCTCCTCGATTGCAGAAATA 57.246 40.909 0.00 0.00 0.00 1.40
326 327 3.634397 TTCCTCCTCGATTGCAGAAAT 57.366 42.857 0.00 0.00 0.00 2.17
327 328 3.417069 TTTCCTCCTCGATTGCAGAAA 57.583 42.857 0.00 0.00 0.00 2.52
328 329 3.074412 GTTTTCCTCCTCGATTGCAGAA 58.926 45.455 0.00 0.00 0.00 3.02
329 330 2.038426 TGTTTTCCTCCTCGATTGCAGA 59.962 45.455 0.00 0.00 0.00 4.26
330 331 2.426522 TGTTTTCCTCCTCGATTGCAG 58.573 47.619 0.00 0.00 0.00 4.41
331 332 2.559698 TGTTTTCCTCCTCGATTGCA 57.440 45.000 0.00 0.00 0.00 4.08
332 333 3.915437 TTTGTTTTCCTCCTCGATTGC 57.085 42.857 0.00 0.00 0.00 3.56
356 357 0.319555 TTCGACCAAAGAGTCCGCTG 60.320 55.000 0.00 0.00 32.91 5.18
362 363 1.871080 CAGCACTTCGACCAAAGAGT 58.129 50.000 0.00 0.00 0.00 3.24
372 381 0.097674 GCATTGGTAGCAGCACTTCG 59.902 55.000 0.00 0.00 0.00 3.79
384 393 0.323633 TAGTGCTGCATGGCATTGGT 60.324 50.000 5.27 0.00 44.34 3.67
434 452 0.747852 GGGTCGAAGATGGAGAGGTC 59.252 60.000 0.00 0.00 40.67 3.85
435 453 0.041238 TGGGTCGAAGATGGAGAGGT 59.959 55.000 0.00 0.00 40.67 3.85
487 505 2.021457 GTTATGGGATGAACGTTGGGG 58.979 52.381 5.00 0.00 0.00 4.96
507 532 1.612469 CGTGCTTGCGTGTGAGAGAG 61.612 60.000 0.00 0.00 0.00 3.20
508 533 1.661509 CGTGCTTGCGTGTGAGAGA 60.662 57.895 0.00 0.00 0.00 3.10
509 534 2.661566 CCGTGCTTGCGTGTGAGAG 61.662 63.158 0.00 0.00 0.00 3.20
510 535 2.661537 CCGTGCTTGCGTGTGAGA 60.662 61.111 0.00 0.00 0.00 3.27
511 536 2.967076 ACCGTGCTTGCGTGTGAG 60.967 61.111 0.00 0.00 0.00 3.51
521 547 4.626081 GTGGAGTGGCACCGTGCT 62.626 66.667 22.41 3.29 44.28 4.40
531 557 1.728971 GTTCGATCTTGCAGTGGAGTG 59.271 52.381 0.00 0.00 0.00 3.51
548 574 4.816385 TCTTTTCCATCGATATGCCTGTTC 59.184 41.667 0.00 0.00 0.00 3.18
553 579 3.607078 GCGTTCTTTTCCATCGATATGCC 60.607 47.826 0.00 0.00 0.00 4.40
557 583 2.933906 GTGGCGTTCTTTTCCATCGATA 59.066 45.455 0.00 0.00 31.83 2.92
567 593 0.320374 TCTCGGATGTGGCGTTCTTT 59.680 50.000 0.00 0.00 0.00 2.52
579 605 4.996122 GCTTTGATGATCATCTTCTCGGAT 59.004 41.667 30.65 0.00 38.60 4.18
587 613 4.744259 GCCTCTCTGCTTTGATGATCATCT 60.744 45.833 30.65 2.60 38.60 2.90
590 616 2.421107 GGCCTCTCTGCTTTGATGATCA 60.421 50.000 0.00 0.00 0.00 2.92
591 617 2.220313 GGCCTCTCTGCTTTGATGATC 58.780 52.381 0.00 0.00 0.00 2.92
592 618 1.562942 TGGCCTCTCTGCTTTGATGAT 59.437 47.619 3.32 0.00 0.00 2.45
593 619 0.986527 TGGCCTCTCTGCTTTGATGA 59.013 50.000 3.32 0.00 0.00 2.92
594 620 1.380524 CTGGCCTCTCTGCTTTGATG 58.619 55.000 3.32 0.00 0.00 3.07
595 621 0.255318 CCTGGCCTCTCTGCTTTGAT 59.745 55.000 3.32 0.00 0.00 2.57
596 622 1.681666 CCTGGCCTCTCTGCTTTGA 59.318 57.895 3.32 0.00 0.00 2.69
597 623 2.045131 GCCTGGCCTCTCTGCTTTG 61.045 63.158 7.66 0.00 0.00 2.77
598 624 2.354343 GCCTGGCCTCTCTGCTTT 59.646 61.111 7.66 0.00 0.00 3.51
599 625 4.093291 CGCCTGGCCTCTCTGCTT 62.093 66.667 14.12 0.00 0.00 3.91
621 647 4.760047 ACAGTGATCACCGCGGCC 62.760 66.667 28.58 12.87 0.00 6.13
622 648 3.490759 CACAGTGATCACCGCGGC 61.491 66.667 28.58 9.70 0.00 6.53
623 649 2.815211 CCACAGTGATCACCGCGG 60.815 66.667 26.86 26.86 0.00 6.46
624 650 2.094659 GTCCACAGTGATCACCGCG 61.095 63.158 22.21 13.36 0.00 6.46
625 651 2.094659 CGTCCACAGTGATCACCGC 61.095 63.158 22.21 5.68 0.00 5.68
626 652 0.732880 GACGTCCACAGTGATCACCG 60.733 60.000 22.21 18.33 0.00 4.94
627 653 0.732880 CGACGTCCACAGTGATCACC 60.733 60.000 22.21 4.89 0.00 4.02
628 654 0.240145 TCGACGTCCACAGTGATCAC 59.760 55.000 18.47 18.47 0.00 3.06
636 662 2.674033 ACCGGATCGACGTCCACA 60.674 61.111 9.46 0.00 38.21 4.17
669 695 1.067142 TCGAGGGGACGAAGACATTTG 60.067 52.381 0.00 0.00 39.34 2.32
671 697 1.263356 TTCGAGGGGACGAAGACATT 58.737 50.000 0.00 0.00 45.21 2.71
724 750 0.597118 GCACGGACAATTTGCTGCAA 60.597 50.000 11.69 11.69 33.26 4.08
726 752 1.734117 GGCACGGACAATTTGCTGC 60.734 57.895 0.00 0.00 36.46 5.25
728 754 2.017049 GATAGGCACGGACAATTTGCT 58.983 47.619 0.00 0.00 36.46 3.91
729 755 1.742831 TGATAGGCACGGACAATTTGC 59.257 47.619 0.00 0.00 35.40 3.68
730 756 3.303329 CGATGATAGGCACGGACAATTTG 60.303 47.826 0.00 0.00 0.00 2.32
731 757 2.872245 CGATGATAGGCACGGACAATTT 59.128 45.455 0.00 0.00 0.00 1.82
732 758 2.158957 ACGATGATAGGCACGGACAATT 60.159 45.455 0.00 0.00 0.00 2.32
734 760 0.821517 ACGATGATAGGCACGGACAA 59.178 50.000 0.00 0.00 0.00 3.18
735 761 1.607148 CTACGATGATAGGCACGGACA 59.393 52.381 0.00 0.00 0.00 4.02
738 764 0.598562 AGCTACGATGATAGGCACGG 59.401 55.000 0.00 0.00 0.00 4.94
739 765 2.742589 TCTAGCTACGATGATAGGCACG 59.257 50.000 0.00 0.00 0.00 5.34
740 766 4.456222 TCTTCTAGCTACGATGATAGGCAC 59.544 45.833 0.00 0.00 0.00 5.01
742 768 5.588648 AGATCTTCTAGCTACGATGATAGGC 59.411 44.000 15.28 8.42 0.00 3.93
744 770 7.981789 AGAGAGATCTTCTAGCTACGATGATAG 59.018 40.741 15.28 0.00 35.87 2.08
745 771 7.847096 AGAGAGATCTTCTAGCTACGATGATA 58.153 38.462 15.28 0.00 35.87 2.15
746 772 6.711277 AGAGAGATCTTCTAGCTACGATGAT 58.289 40.000 15.25 15.25 35.87 2.45
748 774 7.602644 AGTTAGAGAGATCTTCTAGCTACGATG 59.397 40.741 19.74 0.00 35.87 3.84
749 775 7.676947 AGTTAGAGAGATCTTCTAGCTACGAT 58.323 38.462 19.74 0.00 35.87 3.73
751 777 6.089016 CGAGTTAGAGAGATCTTCTAGCTACG 59.911 46.154 20.49 19.82 35.87 3.51
753 779 5.929992 GCGAGTTAGAGAGATCTTCTAGCTA 59.070 44.000 20.49 0.00 35.87 3.32
754 780 4.755123 GCGAGTTAGAGAGATCTTCTAGCT 59.245 45.833 20.54 20.54 35.87 3.32
755 781 4.513692 TGCGAGTTAGAGAGATCTTCTAGC 59.486 45.833 14.90 14.90 35.87 3.42
756 782 5.525745 TGTGCGAGTTAGAGAGATCTTCTAG 59.474 44.000 0.00 0.00 35.87 2.43
758 784 4.265893 TGTGCGAGTTAGAGAGATCTTCT 58.734 43.478 0.00 4.76 39.43 2.85
759 785 4.624336 TGTGCGAGTTAGAGAGATCTTC 57.376 45.455 0.00 0.00 0.00 2.87
760 786 5.590530 ATTGTGCGAGTTAGAGAGATCTT 57.409 39.130 0.00 0.00 0.00 2.40
761 787 5.105554 ACAATTGTGCGAGTTAGAGAGATCT 60.106 40.000 11.07 0.00 0.00 2.75
762 788 5.105752 ACAATTGTGCGAGTTAGAGAGATC 58.894 41.667 11.07 0.00 0.00 2.75
763 789 5.078411 ACAATTGTGCGAGTTAGAGAGAT 57.922 39.130 11.07 0.00 0.00 2.75
764 790 4.486090 GACAATTGTGCGAGTTAGAGAGA 58.514 43.478 17.58 0.00 0.00 3.10
765 791 3.614616 GGACAATTGTGCGAGTTAGAGAG 59.385 47.826 17.58 0.00 0.00 3.20
767 793 3.123621 GTGGACAATTGTGCGAGTTAGAG 59.876 47.826 22.87 0.00 39.39 2.43
775 801 1.206578 GGACGTGGACAATTGTGCG 59.793 57.895 22.87 20.64 39.39 5.34
784 810 3.036084 CACTGTGCGGACGTGGAC 61.036 66.667 18.84 0.00 0.00 4.02
785 813 4.961511 GCACTGTGCGGACGTGGA 62.962 66.667 24.37 0.18 31.71 4.02
813 841 4.025401 CAAACGACGTGGCCTGCC 62.025 66.667 3.32 0.00 0.00 4.85
814 842 4.683334 GCAAACGACGTGGCCTGC 62.683 66.667 3.32 8.36 0.00 4.85
815 843 2.954753 GAGCAAACGACGTGGCCTG 61.955 63.158 18.02 0.00 0.00 4.85
816 844 2.665185 GAGCAAACGACGTGGCCT 60.665 61.111 18.02 7.58 0.00 5.19
828 856 4.680237 CCGTGGCAGGTCGAGCAA 62.680 66.667 18.15 0.00 0.00 3.91
949 977 0.548031 ACACGGATGGATTGCAGGAT 59.452 50.000 0.00 0.00 0.00 3.24
961 989 1.293498 GTGTGCAGGAGACACGGAT 59.707 57.895 0.00 0.00 41.03 4.18
1043 1071 0.104120 CTCCACGGCGGTTGATGATA 59.896 55.000 13.24 0.00 35.57 2.15
1187 1215 1.413077 CACTACCGGGGATCTTCTTCC 59.587 57.143 6.32 0.00 34.83 3.46
1230 1258 2.615262 TTCCACACGTTTTTGGCGCC 62.615 55.000 22.73 22.73 32.37 6.53
1245 1273 4.158786 ACAATCACCCACATCAAATTCCA 58.841 39.130 0.00 0.00 0.00 3.53
1256 1284 5.526111 ACGTATGCTTATAACAATCACCCAC 59.474 40.000 0.00 0.00 0.00 4.61
1266 1294 4.307834 CATGCGGACGTATGCTTATAAC 57.692 45.455 9.66 0.00 32.05 1.89
1274 1302 1.082561 GCATGCATGCGGACGTATG 60.083 57.895 33.99 16.61 44.67 2.39
1275 1303 3.333414 GCATGCATGCGGACGTAT 58.667 55.556 33.99 0.00 44.67 3.06
1351 1385 1.453155 GGTTGACATCCGACATGCTT 58.547 50.000 0.00 0.00 0.00 3.91
1620 1661 1.078426 GTAGTGGCCATGGACGCTT 60.078 57.895 37.69 21.56 41.95 4.68
1659 1700 3.784701 AACGTCAGCGATCTTATGACT 57.215 42.857 15.48 4.98 40.92 3.41
1767 1808 3.654020 GATCGCGCATGGAAGCCC 61.654 66.667 8.75 0.00 0.00 5.19
1785 1826 3.202706 GCGTCGAGGAATTGGCCC 61.203 66.667 9.75 0.00 0.00 5.80
1946 2012 6.365247 TGTCGCAAAGAGTTGTCTATAAGAAC 59.635 38.462 0.00 0.00 37.06 3.01
2122 2188 6.012658 TGACCAATGCATGAAAGACTTTAC 57.987 37.500 0.00 0.00 0.00 2.01
2168 2234 1.648467 CCAAGCGCAAGAACCTAGGC 61.648 60.000 11.47 0.00 43.02 3.93
2399 2465 7.446625 CCAGGAGAATCTCAAATTAATCGGAAT 59.553 37.037 12.79 0.00 33.73 3.01
2515 2584 2.005971 ACTGACCGATTAAGCGAACC 57.994 50.000 15.86 3.67 0.00 3.62
2599 2687 2.038863 TAGTTTGGCCCTCCTCTTCA 57.961 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.