>input_sequence_67493
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-------------------------------------------------------------------ATGCTCTACCACG
AGAAGGCGGAGCACCAGAAGACGTGCGCCGTATCATCAACCGCCGTGGAGCAGCAGGCTGTGCTCCTGCAGCAAGGTCCC
CCGGGTGCCTGCAGCTACGAGCTTGTTTTGCCCAAGGTTCTGCCGACCTCCCGGGCTAGCGTCACCGTCACCATCGCCGG
TGATGACGTCGGGAGGAAGAAGATCCCCGGTAGTGGCAAGGGATCAATGGTAAGACGGGCGCCAAAAACGTGTGGAATTT
GATGTGGGTGATTGTTATAAGCATAC-----GTCC-GCATGCATGCAGGGATCGTTGGTGAGGACGGGTCCTTGCGGCGG
CATCGGTGGCAACGTCAGGGAGACAAGCATGTCGGATGTCAACCGAATCGTCCAGGTCATCGTCCGCCACTGGAACGCCG
TGGACGCCATTTCCGTCATGTACGAGCGGAAGGGCAAGGAGGCGTGGGCCGACAGGTGGGGTGGCGAAGGCGGCAAGCCC
TCCACGGTAGGTATCCCGTC-CCGTTGATTTCCACGATCTCGAGAGTCGAGACTAGTG-TTGGTCTCTCTGTTA---CAT
GAACCCG--CTTTTTTGTTTTGAACGTGCAGTTCAGTCTGCAGCAGGACGAGTACCTGACAAGCGTCCATGGCCACTACG
GCCAATTCAAGGACTTTGTAGTCATAAGATCGCTGACGTTTGTCAGCAACCTTCGCAGCTACGGGCCGTACGGGAAGGAG
GACGGCGTGCCATTCGCGCTCCACGCCGGCCCCGGTGGCAAGATTATGGGCTTCCATGCGCGATCGGGCCAATTCCTCGA
CGCGATTGGCACCTATGTGAAGATGGACAATTATTGA-------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr3D_1_TraesCS3D01G030000
AAAAAATGTGGTGTGACACAAGTTGCATACACGTGCACGATGGGGCGTGCAACTTGGTAAACAAGGAAAAAAAATCACGG
ATGATTTGTAGACCAGGTTAAGGAAAAGTGTGTAATTTTGGTCCGTCAACTTATCAGACCGTCGAAACCGCGAATTTTTT
TTTTATCAGACCGTCTAAGTTCACCCATCATCTTATTTACGTGTAATTTTCTCCATCAAGTGCAAAAAAGGGGTAAATTT
AGTCCCTGGGATGTTAAGGGTTGGTTAAAAAAAATATGATGATTATTTGCTGTGATTATCTACACACCTCCGACGTCCCT
TTATTTATTTCTGCAATCGAGGAGGAAAACAAATTACAGCGGACTC--------TTTGGTCGAAGTGCTGCTACCAATGC
---------CATGCAGCACTAACGTCGCACGTGGAAGACGAAAGAAGCAAGGACCTCTCCATCTTCGACCCACATCACCA
TAAATACATATTCGATCGGCCTCCCCCC-------AACGTTCATCCCATAACTCTC-TCACACGCAAGCACGGTGCCACT
CCACTGCAAGATCGAACAGGCATATCGATGGAAAAGAACGCCACATCCGAGAAGATGATCATCAAAGCAGAGAGGCCAGG
CGCCGCGGCCGCGGTGATCACTGTGGACGTCGATCCGGTGGCTCTGAATTGCCCCAAATGTCTTCGTCCCCTCGAACCTC
CTGTGTTCCAGGTATATATGTACCTCTGCTTGCAGCAAATTGTCCGTGCCTATCATCGTAGCTAGAAGATCTCTCTAACT
CGCACAATTG--TCCACGTCCGCACAGTGCGCGGCACGGCGGCAGGCCACGTCGTTTGCTCGACCTGCCACGGCGACCTC
CCGGACAAGGACAAGCGCGTGTCGTGCTTTGTCAACTCGGGCTTCAGCCGCTGCTTCATCCCGACGAGCTACGGCCGCTG
CTTGGCCCTAGAGCGCATCCTGCAATCCATCCGTGTCTCCTGCACACACGGCTGCGTCGCCGCCAAGATGCTCTACCACG
AGAAGGCGGAGCACCAGAAGACGTGCGCCGTATCATCAACCGCCGTGGAGCAGCAGGCTGTGCTCCTGCAGCAAGGTCCC
CCGGGTGCCTGCAGCTACGAGCTTGTTTTGCCCAAGGTTCTGCCGACCTCCCGGGCTAGCGTCACCGTCACCATCGCCGG
TGATGACGTCGGGAGGAAGAAGATCCCCGGTAGTGGCAAGGGATCAATGGTAAGACGGGCGCCAAAAACGTGTGGAATTT
GATGTGGGTGATTGTTATAAGCATAC-----GTCC-GCATGCATGCAGGGATCGTTGGTGAGGACGGGTCCTTGCGGCGG
CATCGGTGGCAACGTCAGGGAGACAAGCATGTCGGATGTCAACCGAATCGTCCAGGTCATCGTCCGCCACTGGAACGCCG
TGGACGCCATTTCCGTCATGTACGAGCGGAAGGGCAAGGAGGCGTGGGCCGACAGGTGGGGTGGCGAAGGCGGCAAGCCC
TCCACGGTAGGTATCCCGTC-CCGTTGATTTCCACGATCTCGAGAGTCGAGACTAGTG-TTGGTCTCTCTGTTA---CAT
GAACCCG--CTTTTTTGTTTTGAACGTGCAGTTCAGTCTGCAGCAGGACGAGTACCTGACAAGCGTCCATGGCCACTACG
GCCAATTCAAGGACTTTGTAGTCATAAGATCGCTGACGTTTGTCAGCAACCTTCGCAGCTACGGGCCGTACGGGAAGGAG
GACGGCGTGCCATTCGCGCTCCACGCCGGCCCCGGTGGCAAGATTATGGGCTTCCATGCGCGATCGGGCCAATTCCTCGA
CGCGATTGGCACCTATGTGAAGATGGACAATTATTGAACACACGCA---CGCTTGCCAGCTCTATGTTTTGCGTTAATGA
GATGAGCAT-----------GCTGATTCTGAATTCTGTAGTGCTTTTGTTTTGTTGATG----------GACAAAC-AGA
CTGAGTCCCTCGTTCTTATAGACAACTCTTTGCGACACAATCTCCCCATGGAGGTGTGAGACCTCTTCCAATGCAAAGGT
GCTTGGATAAGGTGCTAAGTGCATTAAATACCTTAGCAACTCAACTCCCCAATGCATAGGTGCTTAACTAGTTGTTGCTA
AGCATACTTTATTTAATGAGTTAGCACGTAAAGTCTTTCATGCATTGGTCAAGTTGTTTCATTTAAGTGGTTTGCCTAGG
TTCTTGCGCTTGGCATTGGTTCTTTCTGGGGTCACCAAAGTGCCCTCTCCCCTCCTTAAATGTTGTGCCCTGTCATTTTT
TCGCTTATGTGGCATGCTTAGCACCTGTCCACTGTGGAGCACTGGGAAGGGCCTGAAAGCAAACTTATTTGCATATCGAG
GAGGGACTCCATGATAATAAAACCATTGCTTTGACCAAGGTTTCTTAATTCTCTGAATATGACTA-TT-CCGATTAATTT
GAGATTCTCCTGGAACGGTTCGATCATTTTGAGATTC-CTCAATACATTGGTTTGTGCTTTATCTACAAAGCAGAGTGTG
AGCTTATTTCAAGACTTGCATGCGGTTCGCTTAATCGGTCAGTTATAAGAACTGATATA-------------------TT
TTTTTTGCATATGAATAAGAACTGATACTTACAAAGTTCTTCTCTTTGAAGAGGAGGGCCAAACTAAAATTAAAGGAAAA
TAGGATAAAAAATGACCTGGCCGGAGGAATTGTAAATCTCTATGTACTTTGCATATTCAAAGGTTACTTCTTTTAAACTA
TCAAAGACAAGTGACCACTTTCTTTCTCCCGACCACTTCTGTTCAAATCCCTTCCTCTTGAAATAGTT---GTAGTAAAA
CTATACATGTTCAAAAGGAATACATAATTTCAGTTTTCTACATGGAT
>chr1D_334
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-------------CAATCGAGGAGGAAAACAAATTATTACCGCGGCGTCTTTAATTTGGTGGAAGTGCTGCTGCCAATAT
AATGCCATGCATGCAGCACTAATGTCGCACGTGGAAGACGAAAGAAGCAAGAGCCTCTCCATCTTCGATCCACATCACCA
TAAATACATATTCGATCGGCCTTC-CCCC-----TAACCTTCATCCCATCAACTCGATCACAAGCACGCACTGTACTACT
CCACTGCAAGATCAAACAAGCAGACCGATGGAGAAGAACGACACTTCCGAGACGA-------------------------
--------------TGATCACCGTGGACGTCGATCCGGAGGCTCTGAATTGCCCAAGATGTCTTCGTCCCCTCGAACCTC
CGGTGTTCCAGGTACACACATATGTTGCCGTTCTTTGGAGCGTTTCTCCACCTACTTGGTCGTTCT-----TTTCTAACT
TGCACAATTT--GTCACGTACGCACAGTGCGCGGCC--------GGCCATGTCGTGTGCTCGACCTGCCACGGCGACCTC
CCGGACAAGGACAGGTGCGGGTCGTGCTTTGTCAACTCCGGCTTCAGCCGCTGCTTCATCCCGACGAGCTACGGCCGCTG
CTTGGCCTTGGAGCGTGTCCTGCAATCCGTCCGTGTCGCCTGCCCACACGGCTGCGCCGCCACCAAGATGCTCTACCACG
AGAAGGCGGACCACCAAAAGACGTGTGCCGGATCATCAGCCGCCGTGGAGCAGCCGGCCGTGCTCCTCCAGCAAGGCCCC
CCGGGTGACTGCAGCTACGAGCTTGTTTTGCCCAAGGTTCTGCCGTCATCACGGGCGAGCGTCACCGTCACCATCACCGG
TGATGACGTCGGGAAGAAGAAGATCTGTGATAGTGGCAAGAGCACAATGGTAAGATGAACGCCAATAACATGGGGAATTT
GATCGTGTTGATTAATATTTATTTGCAGAAGCTTATGCATGCATGCAGGGATCGTTGGTGAGGATGGGTCCTTGCGGTGG
CATCGGTGGCAATGTTAGGGAGACGAGCATGTCAGATGTCAACCGAATCGTCGAGGTCATCATCCGCCATGGCAACGCCG
TGGACGCCATTTCCGTCATGTACGAGCGGAAGGGCAAGGAAGCGTGGACCGACAGGTGGGGCGGCGAAGGCGGCAAGCCC
GCCCCGGTAGGTATCACGTCGCCATTAATTTCCACAATCTCGAGACTAGTGTTGGACTCTTGGTCTCTCTGTTCAACCTA
C--------TTTTTGGTTTTTGCACGTGCAGTTCAGTCTGCAGCAGGACGAGTACCTGACCAGCGTCCATGGCCACTACG
GCCAATTCAAGGACACTGTCGTGATAAGATCGCTGACGCTTGTCAGCAACCTTCGCAGCTACGGGTCATACGGGAAGGAG
GACGGCGTGCCATTCGCGCTCCACGCCGGCCCCGGTGGCAAGATCATCGGCTTCCACGCGCGATCTGGCCAATTCCTCGA
CGCGATTGGCACCTATGTGAAGATGGACAATTCTTGAACACGCGCATGGTGCATGCCAGATCTAAGTTTCGCATACATGA
GATGAGCATACTACTC-----CTGATTCTGAATTTTATAGTGCGTCTGTTTTGTTGATGCCGGTTGATGGACAGATAAGA
CTGAGTTCTTCATTCTTATAGACAACTCTTTGCGACACAATCTCCCCATGGAGGTGTGA---------------------
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-----------------------------------------------
>chr3B_354
--------------------------------------------------------------------------------
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---------------------------------TTAGAGCGGCCTC--------TTTGGAGGAAGTGATGCTGCCAATGC
---------CATGCAGCACTAATGTCGCACGTGGAAGACGAAAGAAGCAAGAGCCTCTCCATCTTCGACCCACATCATCA
TAAATACATATTCAATCGGCCGGC-CCCCCTAATTAACGTTCATCCCATAAGCTCGCCCACAAGTACGCAAGGTGCTACT
CCACTGCAAGATCAAACAAGCAAACCGATGGAGAAGAACGCCACTTCGGAGACGA-------------------------
--------------TGATCACCGTGGACGTCGATCCGGAGGCTCTGAATTGCCCAAGATGTCTTCGTCCCCTCGAACCTC
CGGTGTTCCAGGTACACACATATGTTGCCGTTCTTTGCAGCGTTTCTCGACCTACTTGGTCGTTCT-----TTTCTAACT
TGCACAATTTTTGTCACGTACGCACAGTGCGCGGCC--------GGCCATGTCGTGTGCTCGACCTGCCACGGCGACCTC
CCGGACAAGGACAAGTGCATTTCGTGCTTCGTCAACTCCGGCTTCAGCCGCTGCTTCATCCCCACAAGCTACGGCCGCTG
CTTCGCCCTGGAGCGCGTCCTCCGATCGGTCCGTGTCGCCTGCCCACACGGCTGCGCCGCCACGAAGATGCTCTACCACG
AGAAGGCGGAGCACCAGAAGACCTGCGCCGGATCATCCTCAACC------------GCCGTGCTCCTGCAGCAAGGTCCC
CCGGGTGACTGCAGCTACGAGCTTGTTTTGCCCAAGGTTCTGTCGTCCTCGCGGGCCAGCGTCACCGTCACCATCACCGG
TGATGACGTCGGGAAGAAGAAGATCCCCGGTAGTGGCAAGGGATCAATGGTAAGACGCGGGCCAAAAGCGTGGGGAATTT
GATCTGGGTGATTCTAATAACGGTAC-----GTAC-GTATGCATGCAGGGATCGTTGGTGAGGATGGGTCCTTGCGGCGG
CAGCGGTGGCAACATCAGGGAGACGGGCATGTCGGACGTCAACCGAATCGTCCAGGTCATCCTCCGGCACGGAAACGCCA
TGGACACCATTTCCGTCATGTACGAGTGGAAGGGCAAGGAGGTGTGGACCGACAGGTGGGGTGGCGAAGGCGGCAAGCCC
TCCCCGGTAGGTATCCCGTCGCCATTGATTTCCACTATCTCGAGAGTCGACACTAGTG-TTGGTCTCTCTGTTA---CTA
C--------CTTTTTGTTTTTGGACGTGCAGTTCAGTCTGCAGCAGGACGAGTACCTGACGAGCGTCCATGGCCACTATG
GCCAATTCAAGGGCTTTGTCGTCGTAAGATCGCTGAAGTTTGTCAGCAACCTTCGCAGCTACGGGCCGTATGGGAAAGAG
GACGGCGTGTCATTCGCACTCCACGCCGGCCCCGGTGGCAAGATCATCGGCTTCCACGCGCGATCCGGCCAATTCCTTGA
CGCGATTGGCACCTATGTGAAGATGGACAATTACTGAACACGCATA---TGCATGCCAGATCTATGTTTTGCGTACATGA
GATGAGCATACTAGCTACATGCTGATTCTGAATTCTGTAGTGCGTTT-TTCTGTTGATG----------GATAGAC-AGA
CTGAGTTCTTCATTCTTATAGACAACTCTTTGCGACACAATCCCCCATGGA--GTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TGAAAGCAAACTTATTTGCATATCGAG
GAGGGATTCCATGATAATAAAACCATCGCTTCGACCAAGGTTTCCTAATTCTCTAAATACGACTG-TTTCCAATTAATTT
GAGATTATCCTAGAACGCTTTGATAATTTTGAGATTCTTCAAATACTTTTGTTTATGCTTTATCTATAAAGCAGCGCGTA
AACATATTTGAAGACTTGCATGCAGTTAGCTCCATCGATCAGTTATAAGAACTGATTTTTCTTTTTCTTTTTTCC----T
TTTTTTGCATATGAATAAGAACTGATACTTACAAAGTTCTTCTCTTCAAAGAGAAGGGTCAAACTAAAATTAAAAGAAAA
TAGGTTCAAAAATGACCTGGCCAGAGAAATTGTATATCTATATATACTTTACATATTCAAATGTTACTTCTTTTCAACTA
GCAAAGATAAGTGACCACTTTCTTTCTCCCGACCACTTCTGTTCAAATCCCTTCCTCTTGAAATAGTT---CTACTAAAA
CTATACATGTTCAACAGGAATGCATAATTTGGGTTTTTTCATGGAT-
>chr3B_437
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------CCTCTCCATCTTCGACCCACATCACCA
TCAATACATATTCGATCGGCCTCCACCCCCTAATTAACGTTCATCCCATAAGCTCGCCCACAAGTACGCAAGGTGCTACT
CCACTGCAAGATCAAACAAGCTGATCGATGGAGAAGAACGCCACTTCGGAGACGA-------------------------
--------------TGATCACCGTGGACGTCGATCCGGAGGCTCTGAATTGCCCAAGATGTCTTCGTCCCCTCGAACCTC
CGGTGTTCCAGGTACACACATATGTTGCCGTTCTTTGCAGCGTTTCTCGACCTACTTGGTCGTTCT-----TTTCTAACT
TGCACAATTTTTGTCACGTACGCACAGTGCGCGGCC--------GGCCATGTCGTGTGCTCGACCTGCCACGGCGACCTC
CCGGACAAGGACAAGTGCATTTCGTGCTTCGTCAACTCCGGCTTCAGCCGCTGCTTCATCCCCACAAGCTACGGCCGCTG
CTTCGCCCTGGAGCGCGTCCTCCGATCGGTCCGTGTCGCCTGCCCACACGGCTGCGCCGCCACGAAGATGCTCTACCACG
AGAAGGCGGAGCACCAGAAGACCTGCGCCGGATCATCCTCAACC------------GCCGTGCTCCTGCAGCAAGGTCCC
CCGGGTGACTGCAGCTACGAGCTTGTTTTGCCCAAGGTTCTGTCGTCCTCGCGGGCCAGCGTCACCGTCACCATCACCGG
TGATGACGTCGGGAAGAAGAAGATCCCCGGTAGTGGCAAGGGATCAATGGTAAGACGCGGGCCAAAAGCGTGGGGAATTT
GATCTGGGTGATTCTAATAACGGTAC-----GTAC-GTATGCATGCAGGGATCGTTGGTGAGGATGGGTCCTTGCGGCGG
CAGCGGTGGCAACATCAGGGAGACGGGCATGTCGGACGTCAACCGAATCGTCCAGGTCATCCTCCGGCACGGAAACGCCA
TGGACACCATTTCCGTCATGTACGAGTGGAAGGGCAAGGAGGTGTGGACCGACAGGTGGGGTGGCGAAGGCGGCAAGCCC
TCCCCGGTAGGTATCCCGTCGCCATTGATTTCCACTATCTCGAGAGTCGACACTAGTG-TTGGTCTCTCTGTTA---CTA
C--------CTTTTTGTTTTTGGACGTGCAGTTCAGTCTGCAGCAGGACGAGTACCTGACGAGCGTCCATGGCCACTATG
GCCAATTCAAGGGCTTTGTCGTCGTAAGATCGCTGAAGTTTGTCAGCAACCTTCGCAGCTACGGGCCGTATGGGAAAGAG
GACGGCGTGTCATTCGCACTCCACGCCGGCCCCGGTGGCAAGATCATCGGCTTCCACGCGCGATCCGGCCAATTCCTTGA
CGCGATTGGCACCTATGTGAAGATGGACAATTACTGAACACGCATA---TGCATGCCAGATCTATGTTTTGCGTACATGA
GATGAGCATACTAGCTACATGCTGATTCTGAATTCTGTAGTGCGTTT-TTCTGTTGATG----------GATAGAC-AGA
CTGAGTTCTTCATTCTTATAGACAACTCTTTGCGACACAATCCCCCATGGA--GTG------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------TGAAAGCAAACTTATTTGCATATCGAG
GAGGGATTCCATGATAATAAAACCATCGCTTCGACCAAGGTTTCCTAATTCTCTAAATACGACTG-TTTCCAATTAATTT
GAGATTATCCTAGAACGCTTTGATAATTTTGAGATTCTTCAAATACTTTTGTTTATGCTTTATCTATAAAGCAGCGCGTA
AACATATTTGAAGACTTGCATGCAGTTAGCTCCATCGATCAGTTATAAGAACTGATTTTTCTTTTTCTTTTTTCC----T
TTTTTTGCATATGAATAAGAACTGATACTTACAAAGTTCTTCTCTTCAAAGAGAAGGGTCAAACTAAAATTAAAAGAAAA
TAGGTTCAAAAATGACCTGGCCAGAGAAATTGTATATCTATATATACTTTACATATTCAAATGTTACTTCTTTTCAACTA
GCAAAGATAAGTGACCACTTTCTTTCTCCCGACCACTTCTGTTCAAATCCCTTCCTCTTGAAATAGTT---CTACTAAAA
CTATACATGTTCAACAGGAATGCATAATTTGGGTTTTTTCATGGAT-
>chr3B_870
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----------------GCGTTTCGTGCTTCGTCAACTCGGGCTTCACCCGCTGCTTCATCCCGACGAGCTACGGCCGCTG
CTTGGCCCTGGAGCGCGTCCTGCAATCCGTCCGTGTCGCCTGCCCACACGGCTGCGCCGCCGCCAAGATGCTCTACCACG
AGAAGGCGGACCACCAAAAGACGTGTGTCGGATCATCAGCCGCCGTGGAGCAGCCGGCCGTGCTCCTCCAGCAAGCCCCC
TCGGGTGACTGCAGCTACGAGCTTGTTTTGCCCAAGGTTCTGCCGTCATCACGGACGAGCGTCACCGTCACCATCACCGG
TGATGATGTCGGGAAGAAGAAGATCCCCGGTAGTGGCAAGGGCTCAATGGTAAGACACGCATCACAAACGTTGCCACGTT
GATTTTTATT-TTTATATAGATTTGCTGAAGGTGC-GCATACATGCAGGGATCGTTGGTGAGGATGGGACCTTGCGGCGG
CATCGGTGGCAACGTCAGGGAGACGAGCATGTCGGACGTCAGCCGAATCGTCGAGGTCATCGTCCGGCACGGAAACGCCG
TGGACGCCATTTCTGTCAGGTAGGAGCGGAAGGGCAAGGAGGAGTGGGCCGACAGGTGGGGTGGCGAAGGCGGCAAGACC
TCCCCGGTAGGTATCCCGTCGCCGTCGATTTCCACGATCTGC-------AGACTAGTG-TCGGTCTCTCTGTTA---CTT
GAACCTGCTTTTTTTATTTTTGAACGTGCAGTTCAGTCTGCAGCAGGATGAGTACCTGACGAGCGTCCATGGCCACTACG
GTGAATTCAATGGCTTTGTCGTCGTAAGATCGCTGACGTTCGCCAGCAACCTTCGCAGTTACGGGCCGTACGGTAAGGAG
GACGGCGTGCCGTTTGCGCTCCACGCCGGCCCCGGTGGCAAGATCATCGGCTTCCACGCGCGATCCGGCCAATTCCTCGA
CGCGATTGGCACGTATGTGAAGATGGACAATTAATGAACACGCGCA---TGCATGCCAGATCTATGTTTCACGTACATGA
GATGAGCATGCTAGCTAGGTGCTGATTCTGAATCCTGTAGTGCGTCTGTTTTGTTGATG----------GACAGAC-AGA
CTGAGTTCTTCATTCTTATAGACAACTATTTGCGACACAATCTCCCCATGAAGGTG------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------TGAAAGCAAACTTATTTGCATATCGAG
GAGGGACTCTATGATAATAAAACCATTGCTTGGACCAAGGTTTCATGATTCTCTGAATACGACTG-TT-CCGATTAATTT
GAGATTCTCTTGGAAAGGTTTGATCATTTTGAGATTCTCCAAATACTTTGGTTTGTGCTTCATCTATAAAGCAAAGTGTG
ACCCTATTTCAAGACTAGTAGGCACTTAGCTTGATCGGCCAGTAATAAAAACTGAATTTTCTTTTCTATTTTTTGGTTTT
TTTTTTGCATATGACTA-----TGATACTTACAAAGTTCTTCTCTTCGAAGAGGAGGCCCGAACTAAAACTAA-AGAAAA
TAGGCTGAAAAAGGGCCTGGCAAGAGGAATTGTA----TATATATACTTTGCATGTTCAAATTTTGCTCATGTTAAACTA
TCAAAGACAAGCGACCACTTTCTTTCTCCTGACCACTTCTGTTCAAGTCTCTTCCTCGTAAAATAGTGGTACTAGTAAAA
CTATACATGTTCAAAAGGAATACATGATTTCCGTTTTC---------
>chr3B_1697
--------------------------------------------------------------------------------
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--------------------------------------------------------AGCTACGGGCCATAGGGAAAA-AG
GACGGCGTGCCATTCGCGCTCCACGCCGGCGCCGATGGCAGGATCATCGGCTTCCACGCATGATCTGGCCAATTCCTCGA
CACGATTGGCACATATGTTAAGATGGACAATTATTGAACACGCGCATGGTGCATGCCAGATCTATGTTCTGCATACATGA
GATGAGCATACTAGCTAGATGCTGATTCTGAATTCTGTAGTGCGTCTGTTTTGTTGATGCCGGTTGATGGACAAAC-GGA
CTGAG--------------------------------------CCCCATGGAGGTG------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------TGAAAGCAAACTTATTTGAATATCAGG
GAGGGACTCACCGATAATAAAACCATCGCTTTGTCCAACGTCTCCT-GTTCTTCGAATATGACTG-TT-CCGATCAATTT
GAGATTCTCCTTGAACGGTTCGATCATTTTGAGATTATCTGAATACTTTGATTTGTGCTTCATCTATAAAGCAGAGTGTG
AGCCTATTTCAAAACTAGTAGGAAGTTAGCGTGGTCGGTTAGTTATAAGAACCGAATTTTCTTTTC---TTTTCA----T
TTTTTTGCATACGAATAAGAACTGGTACTTTCAAAATTATACTCTTCGAAGATGCGGGTTCAAATAAAATTAAAAGAAAA
TAGGTT-AAAAATGACCTGGCCGGAGGTATACAA--------------TTCCATATTCAAAATTTACTTCTTTTAAACCA
TCAAAGACAAGCAGTCACTTTCTTTCTCCTGACCACTTCCGTTCAAATCCCTTCCTCTTGAAATAGTT---GTAGTAAAA
CTATACATGTCCCGAAGGAATACATAATTTCCGTTTTCTACATGGAT
>chr3D_1787
--------------------------------------------------------------------------------
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------------------------------------------------------------------GGCCAATTCCTCGA
CGCGATTGGCACCTATGTGAAGATGGACAATTATTGAACACACGCA---CGCTTGCCAGCTCTATGTTTTGCGTTAATGA
GATGAGC-----------ATGCTGATTCTGAATTCTGTAGTGCTTTTGTTTTGTTGATG----------GACAAAC-AGA
CTGAGTCCCTCATTCTTATAGACAACTCTTTGCCACACAATCTCCCCATGGAGGTGTGAGACCTCTTCCAATGCAAAGGT
GCTTGGATGAGGTGCTAAGTGCATTAAATACCTTAGCAACTCAACTCCCCAATGCATAGGTGCTTAACTAGTTATTGCTA
AGCATACTTTATTTAATGAGTTAGCACCTAAAGTCTTTCATGCATTGGTCAAGTTGTTTCATTTAAGTGGTTTTCCTAGG
TTCTTGCGCTTGGCATTGGTTCTTTCTGGGGTCACCAAAGTGCCCTCTCCCCTCCTTAAATGTTGTGCCATGTCATTTTT
TCGCTTATGTGGCATGCTTAGCACCTGTCCACTGTGGAGCACTGGGAAGGGCCTGAAAGCAAACTTATTTGCATATCGAG
GAGGGACTCCATGATAATAAAACCATTGCTTTGACCAAGGTTTCTTAATTCTCTGAATATGACTG-TT-CCGATTAATCT
GAGATTCTCCTGGAACGGTTCGATCATTTTGAGATTCTCTCAATACTTTGGTTTGTGCTTTATCTACAAAGCAGAGTGTG
AGCTTATTTCAAGACTTGCATGCAGTTCGCTTCATCGGTCAGTTATAAGAACTGATTTTTTTT----------------T
TTTTTTGCATATGAATAAGAACTGATACTTACAAAGTTCTTCTCTTCGAAGAGGAGGGCCAAACTAAGATTAAAGGAAAA
TAGGATAAAAAATGACCTGGCCGAAGGAATTGTAAATCTCTATGTACTTTGCATATTCAAATGTTACTTCTTTTAAACTA
TCAAAGACAAGTGACCACTTTCTTTCTCCCGACCACTTCTGTTCAAATCCCTTCCTCTTGAAATAGTT---GTAGTAAAA
CTATACATGTTCAAAAGGAATACATAATTTCAGTTTTCTACATGGAT
>chrUn_1787
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------------------------------------------------------------------GGCCAATTCCTCGA
CGCGATTGGCACCTATGTGAAGATGGACAATTATTGAACACACGCA---CGCTTGCCAGCTCTATGTTTTGCGTTAATGA
GATGAGC-----------ATGCTGATTCTGAATTCTGTAGTGCTTTTGTTTTGTTGATG----------GACAAAC-AGA
CTGAGTCCCTCATTCTTATAGACAACTCTTTGCCACACAATCTCCCCATGGAGGTGTGAGACCTCTTCCAATGCAAAGGT
GCTTGGATGAGGTGCTAAGTGCATTAAATACCTTAGCAACTCAACTCCCCAATGCATAGGTGCTTAACTAGTTATTGCTA
AGCATACTTTATTTAATGAGTTAGCACCTAAAGTCTTTCATGCATTGGTCAAGTTGTTTCATTTAAGTGGTTTTCCTAGG
TTCTTGCGCTTGGCATTGGTTCTTTCTGGGGTCACCAAAGTGCCCTCTCCCCTCCTTAAATGTTGTGCCATGTCATTTTT
TCGCTTATGTGGCATGCTTAGCACCTGTCCACTGTGGAGCACTGGGAAGGGCCTGAAAGCAAACTTATTTGCATATCGAG
GAGGGACTCCATGATAATAAAACCATTGCTTTGACCAAGGTTTCTTAATTCTCTGAATATGACTG-TT-CCGATTAATCT
GAGATTCTCCTGGAACGGTTCGATCATTTTGAGATTCTCTCAATACTTTGGTTTGTGCTTTATCTACAAAGCAGAGTGTG
AGCTTATTTCAAGACTTGCATGCAGTTCGCTTCATCGGTCAGTTATAAGAACTGA--TTTT---------TTTTT----T
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr3A_1928
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------CAAAC-AGA
CTGAGTTTCTCATTCTTATAGACAACTCTTGGCGACACAATCTCCCCATGGAGGTG------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------TGAAAGCAAACTTATTTGCATATCGAG
GAGGGACACTATGATAATAAAACCATCGCTTTGACCAAGGTGTCCTAATTCTCTGAATACAACCGTTT-CCAATTAATTT
GAGATTCTCATAGAACGATTCGATCATTTTGAGATTCTCCGAATACTTTGGTTTGTGCTTTATTATAA----AGAGTGTG
AGCCTATTTCAAGACTTGCAGGCAGTTAGCTTCATTGGTTAGTTATAAGCT------TTTC---------TTTTC----T
TTTTTTGCATATGAATAAGAACTGATACTTACAAAGTTCTTCTCTTCGAAGAGGAGGGCCAAACTAAAATCAAAGGGAAA
TAGGTTCAAAAATGACCTGGCCGGAGGAATTGTAAATCTATATATACTTTGCATATTCAAATGTTACTTCTTTTAAATTA
CCAAAGACAAGTGACCACTTTCTTTCTCCCGACCACTTCTGTTCAAATCCCTTCCTCTTGAAATAGTT---GTAATAAA-
CTATACATGTTCAAAAGGAATACATAATTTCAGTTTTCTACATGGAT
>chr3B_2309
--------------------------------------------------------------------------------
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-----------------------------------------------------TGAAAGCAAACTTATTTGAATATCAGG
GAGGGACTCAACG---ATAATAAAATCGCTTTGCCCAATGTCTCCT-ATTCTTCGAATACGACTG-TT-CCGATCAATTT
GAGGTTCTCCTGGAACGGTTCGATCATTTTGAGATTCTCTGAATACTTTGATTTGTGCTTCATCTATAAAGCAGAGTGTG
AGCCTATTTCAAAACTAGTAGGCAGTTAGCGTGATCGGTTAGTTATAAGAACCGA--TTTT---------TTTTC----A
TTTTTTGCATATGAATAAGAACTGACACTTTCAAAATTATACTCTTCGAAGATGCGGGTTGAAATAAAATTAAAAGAAAA
TAGGTT-AAAAATGACCTGGCCGGAGGTATACAA--------------TTCCATATTCAAAATTTACTTCTTTTAAACCA
TCAAAGACAAGCGGTCACTTTCTTTCTCCTGACCACTTCTGCTAAAATCCCTTCCTCTTAAAATAGTT---GTAGTAAAA
CAATACATGTTCTGAACGAATACACAATTTCCGTTTTCTACATGGAT
>chr3B_2309
--------------------------------------------------------------------------------
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-----------------------------------------------------TGAAAGCAAACTTATTTGAATATCAGG
GAGGGACTCAACG---ATAATAAAATCGCTTTGCCCAATGTCTCCT-ATTCTTCGAATACGACTG-TT-CCGATCAATTT
GAGGTTCTCCTGGAACGGTTCGATCATTTTGAGATTCTCTGAATACTTTGATTTGTGCTTCATCTATAAAGTAGAGCGTG
AGCCTATTTCAAAACTAGTAGGCAGTTAGCGTGATCGGTTAGTTATAAGAACCGA--TTTTTTTTC---TTTTTC----A
TTTTTTGCATATGAATAAGAACTGATACTTTCAAAATTATACTCTTCGAAGATGCGGGTTGAAATAAAATTAAAAGAAAA
TAGGTT-AAAAATGACCTGGCCGGAGGTATACAA--------------TTCCATATTCAAAATTTACTTCTTTTAAACCA
TCAAAGACAAGAGGTCACTTTCTTTTTCCAGACCACTTCTGCTAAAATCCCTTCCTCTTAAAATAGTT---GTAGTAAAA
CTATACATGTTCTGAAGGAATACACAATTTCCGTTTTCTACATGGAT
>chr3B_2309
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-----------------------------------------------------TGAAAGCAAACTTATTTGAATATCAGG
GAGGGACTCAACG---ATAATAAAATCGCTTTGCCCAATGTCTCCT-ATTCTTCGAATACGACTG-TT-CCGATCAATTT
GAGGTTCTCCTGGAACGGTTCGATCATTTTGAGATTCTCTGAATACTTTGATTTGTGCTTCATCTATAAAGTAGAGCGTG
AGCCTATTTCAAAACTAGTAGGCAGTTAGCGTGATCGGTTAGTTATAAGAACCGA--TTTTTTC----TTTTTCA----T
TTTTTTGCATATGAATAAGAACTGATACTTTCAAAATTATACTCTTCGAAGATGCGGGTTGAAATAAAATTAAAAGAAAA
TAGGTT-AAAAATGACCTGGCCGGAGGTATACAA--------------TTCCATATTCAAAATTTACTTCTTTTAAACCA
CCAAAGACAAGCGGTCACTTTCTTTTTCCAGACCACTTCTGCTAAAATCCCTTCCTCTTAAAATAGTT---GTAGTAAAA
CTATACATGTTCTGAAGGAATACACAATTTCCGTTTTCTACATGGAT
>chr3B_2309
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-----------------------------------------------------TGAAAGCAAACTTATTTGAATATCAGG
GAGGGACTCAACG---ATAATAAAATCGCTTTGCCCAATGTCTCCT-ATTCTTCGAATACGACTG-TT-CCGATCAATTT
GAGGTTCTCCTGGAACGGTTCGATCATTTTGAGATTCTCTGAATACTTTGATTTGTGCTTCATCTATAAAGTAGAGCGTG
AGCCTATTTCAAAACTAGTAGGCAGTTAGCGTGATCGGTTAGTTATAAGAACCGA--TTTTTTTTC---TTTTTC----A
TTTTTTGCATATGAATAAGAACTGATACTTTCAAAATTATACTCTTCGAAGATGCGGGTTGAAATAAAATTAAAAGAAAA
TAGGTT-AAAAATGACCTGGCCGGAGGTATACAA--------------TTCCATATTCAAAATTTACTTCTTTTAAACCA
TCAAAGACAAGCGGTCACTTTCTTTTTCCTGACCACTTCTGCTAAAATCCCTTCCTCTTAAAATAGTT---GTAGTAAAA
CTATACATGTTCTGATGGAATACACAATTTCCGTTTTCTACATGGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----------------------S-----S-----------------S-----------S-------
----------------------S----------------------------SS---------------------------
------------------------S--------------------------SSSSS------S---S---------S---
-------------S----S---S---------S-----------S-------S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------S----------------S---------------S-S-----------------------
-S------------S-S-SS--SS-SSS-S-S-SSSSS-SS--SSS-S-SSS-SS-S-SSSS-SSSSSSSS-S-------
S--------S--SS-----S---------------SSSSSSSSS-----S-----S------------------------
---------------S----------------------------------------------------------------
---------S------S-----------S--------S-----S------------S-----------------------
------------------------------S-------S---------------S---S---------------------
-------S-------------------------------------S----S-----S------------------S----
--------------S------------------------------------------S--------------S-------
---S---------S------SSS----------S------------------------------S---------------
------------------------S---------------------------------------------S-S-------
--------------------------------------------------------------------------------
---S--------------------------------------------------------------------------S-
-----S---------SS-------------------------------------------S-------------------
-------------------S------------------------------------------------------------
--------------------------------------------S--S--------S--------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------S----------------------------------------------------------------S------
---------------------------S---------------------------------------------S------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
----------------------------------------------S---------------------------------
-----------------------S--------S-----------------------S-S---------------------
----------------------------------------------S---------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_618
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--------------------------------------CGCCACATCCGAGAAGATGA----------------------
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>reverse_1661
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------------------------------------------------------------AAGCGTCCATGGCCACTAC-
--------------------------------------------------------------------------------
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>forward_998
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------------------CCTGCAATCCATCCGTGTCT------------------------------------------
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>reverse_2234
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-------------------------------------------------------------------------GCCTAGG
TTCTTGCGCTTGG-------------------------------------------------------------------
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-----------------------------------------------
