Multiple sequence alignment - TraesCS3D01G025500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G025500 chr3D 100.000 2553 0 0 1 2553 8832037 8829485 0.000000e+00 4715.0
1 TraesCS3D01G025500 chr3D 93.373 332 22 0 207 538 189986718 189986387 2.280000e-135 492.0
2 TraesCS3D01G025500 chr3B 88.853 1839 136 44 732 2553 10665538 10663752 0.000000e+00 2196.0
3 TraesCS3D01G025500 chr3A 86.912 1849 113 47 740 2551 12253038 12254794 0.000000e+00 1954.0
4 TraesCS3D01G025500 chr7B 95.195 333 16 0 207 539 543791728 543792060 6.260000e-146 527.0
5 TraesCS3D01G025500 chr2D 95.413 327 15 0 212 538 631241745 631242071 2.910000e-144 521.0
6 TraesCS3D01G025500 chr2D 94.294 333 17 2 207 539 418555496 418555826 2.270000e-140 508.0
7 TraesCS3D01G025500 chr2D 93.134 335 23 0 204 538 309299561 309299895 2.280000e-135 492.0
8 TraesCS3D01G025500 chr7D 93.994 333 20 0 207 539 370315078 370315410 2.930000e-139 505.0
9 TraesCS3D01G025500 chr4D 94.207 328 19 0 211 538 347581311 347581638 3.790000e-138 501.0
10 TraesCS3D01G025500 chr4D 93.413 334 18 2 210 539 313324382 313324049 2.280000e-135 492.0
11 TraesCS3D01G025500 chr5D 93.675 332 19 2 209 540 412079819 412079490 1.760000e-136 496.0
12 TraesCS3D01G025500 chr6D 87.681 138 17 0 919 1056 140640955 140641092 7.310000e-36 161.0
13 TraesCS3D01G025500 chr6D 100.000 28 0 0 877 904 140640929 140640956 5.000000e-03 52.8
14 TraesCS3D01G025500 chr6B 88.800 125 14 0 920 1044 240384367 240384491 1.220000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G025500 chr3D 8829485 8832037 2552 True 4715 4715 100.000 1 2553 1 chr3D.!!$R1 2552
1 TraesCS3D01G025500 chr3B 10663752 10665538 1786 True 2196 2196 88.853 732 2553 1 chr3B.!!$R1 1821
2 TraesCS3D01G025500 chr3A 12253038 12254794 1756 False 1954 1954 86.912 740 2551 1 chr3A.!!$F1 1811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 600 0.099436 CGGCAACTGCTGGATTTAGC 59.901 55.0 2.37 0.0 43.47 3.09 F
601 602 0.099436 GCAACTGCTGGATTTAGCCG 59.901 55.0 0.00 0.0 43.02 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1563 1.133513 ACAGGGACAAGTGGCAAATCA 60.134 47.619 0.0 0.0 0.0 2.57 R
1674 1720 2.514458 AATGAAGGACCAAGGCGAAT 57.486 45.000 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.186909 TCAGTAATTCTGCCAATCGTCG 58.813 45.455 0.00 0.00 43.32 5.12
22 23 3.119280 TCAGTAATTCTGCCAATCGTCGA 60.119 43.478 0.00 0.00 43.32 4.20
23 24 3.000322 CAGTAATTCTGCCAATCGTCGAC 60.000 47.826 5.18 5.18 37.36 4.20
24 25 1.369625 AATTCTGCCAATCGTCGACC 58.630 50.000 10.58 0.00 0.00 4.79
25 26 0.249120 ATTCTGCCAATCGTCGACCA 59.751 50.000 10.58 0.00 0.00 4.02
26 27 0.249120 TTCTGCCAATCGTCGACCAT 59.751 50.000 10.58 0.00 0.00 3.55
27 28 1.107945 TCTGCCAATCGTCGACCATA 58.892 50.000 10.58 0.00 0.00 2.74
28 29 1.478916 TCTGCCAATCGTCGACCATAA 59.521 47.619 10.58 0.00 0.00 1.90
29 30 1.860950 CTGCCAATCGTCGACCATAAG 59.139 52.381 10.58 0.00 0.00 1.73
30 31 1.217882 GCCAATCGTCGACCATAAGG 58.782 55.000 10.58 9.81 42.21 2.69
31 32 1.865865 CCAATCGTCGACCATAAGGG 58.134 55.000 10.58 2.16 44.81 3.95
32 33 1.411246 CCAATCGTCGACCATAAGGGA 59.589 52.381 10.58 0.00 41.15 4.20
33 34 2.545952 CCAATCGTCGACCATAAGGGAG 60.546 54.545 10.58 0.00 41.15 4.30
34 35 2.068834 ATCGTCGACCATAAGGGAGT 57.931 50.000 10.58 0.00 41.15 3.85
35 36 2.715749 TCGTCGACCATAAGGGAGTA 57.284 50.000 10.58 0.00 41.15 2.59
36 37 3.003394 TCGTCGACCATAAGGGAGTAA 57.997 47.619 10.58 0.00 41.15 2.24
37 38 2.684881 TCGTCGACCATAAGGGAGTAAC 59.315 50.000 10.58 0.00 41.15 2.50
38 39 2.424601 CGTCGACCATAAGGGAGTAACA 59.575 50.000 10.58 0.00 41.15 2.41
39 40 3.488721 CGTCGACCATAAGGGAGTAACAG 60.489 52.174 10.58 0.00 41.15 3.16
40 41 3.446516 GTCGACCATAAGGGAGTAACAGT 59.553 47.826 3.51 0.00 41.15 3.55
41 42 4.081807 GTCGACCATAAGGGAGTAACAGTT 60.082 45.833 3.51 0.00 41.15 3.16
42 43 4.529377 TCGACCATAAGGGAGTAACAGTTT 59.471 41.667 0.00 0.00 41.15 2.66
43 44 5.716228 TCGACCATAAGGGAGTAACAGTTTA 59.284 40.000 0.00 0.00 41.15 2.01
44 45 6.381994 TCGACCATAAGGGAGTAACAGTTTAT 59.618 38.462 0.00 0.00 41.15 1.40
45 46 7.046033 CGACCATAAGGGAGTAACAGTTTATT 58.954 38.462 0.00 0.00 41.15 1.40
46 47 8.199449 CGACCATAAGGGAGTAACAGTTTATTA 58.801 37.037 0.00 0.00 41.15 0.98
47 48 9.543783 GACCATAAGGGAGTAACAGTTTATTAG 57.456 37.037 0.00 0.00 41.15 1.73
48 49 9.054580 ACCATAAGGGAGTAACAGTTTATTAGT 57.945 33.333 0.00 0.00 41.15 2.24
53 54 8.303780 AGGGAGTAACAGTTTATTAGTACTCC 57.696 38.462 16.37 16.37 46.91 3.85
55 56 7.199078 GGAGTAACAGTTTATTAGTACTCCCG 58.801 42.308 14.64 0.00 43.80 5.14
56 57 7.148000 GGAGTAACAGTTTATTAGTACTCCCGT 60.148 40.741 14.64 0.00 43.80 5.28
57 58 8.127150 AGTAACAGTTTATTAGTACTCCCGTT 57.873 34.615 0.00 0.00 0.00 4.44
58 59 8.588472 AGTAACAGTTTATTAGTACTCCCGTTT 58.412 33.333 0.00 0.00 0.00 3.60
59 60 7.662604 AACAGTTTATTAGTACTCCCGTTTG 57.337 36.000 0.00 0.00 0.00 2.93
60 61 6.996509 ACAGTTTATTAGTACTCCCGTTTGA 58.003 36.000 0.00 0.00 0.00 2.69
61 62 7.444299 ACAGTTTATTAGTACTCCCGTTTGAA 58.556 34.615 0.00 0.00 0.00 2.69
62 63 7.601508 ACAGTTTATTAGTACTCCCGTTTGAAG 59.398 37.037 0.00 0.00 0.00 3.02
63 64 6.592994 AGTTTATTAGTACTCCCGTTTGAAGC 59.407 38.462 0.00 0.00 0.00 3.86
64 65 4.820894 ATTAGTACTCCCGTTTGAAGCT 57.179 40.909 0.00 0.00 0.00 3.74
65 66 5.927281 ATTAGTACTCCCGTTTGAAGCTA 57.073 39.130 0.00 0.00 0.00 3.32
66 67 5.726980 TTAGTACTCCCGTTTGAAGCTAA 57.273 39.130 0.00 0.00 0.00 3.09
67 68 4.820894 AGTACTCCCGTTTGAAGCTAAT 57.179 40.909 0.00 0.00 0.00 1.73
68 69 5.161943 AGTACTCCCGTTTGAAGCTAATT 57.838 39.130 0.00 0.00 0.00 1.40
69 70 6.290294 AGTACTCCCGTTTGAAGCTAATTA 57.710 37.500 0.00 0.00 0.00 1.40
70 71 6.104665 AGTACTCCCGTTTGAAGCTAATTAC 58.895 40.000 0.00 0.00 0.00 1.89
71 72 5.161943 ACTCCCGTTTGAAGCTAATTACT 57.838 39.130 0.00 0.00 0.00 2.24
72 73 5.176592 ACTCCCGTTTGAAGCTAATTACTC 58.823 41.667 0.00 0.00 0.00 2.59
73 74 4.510571 TCCCGTTTGAAGCTAATTACTCC 58.489 43.478 0.00 0.00 0.00 3.85
74 75 4.020039 TCCCGTTTGAAGCTAATTACTCCA 60.020 41.667 0.00 0.00 0.00 3.86
75 76 4.881850 CCCGTTTGAAGCTAATTACTCCAT 59.118 41.667 0.00 0.00 0.00 3.41
76 77 6.053005 CCCGTTTGAAGCTAATTACTCCATA 58.947 40.000 0.00 0.00 0.00 2.74
77 78 6.540914 CCCGTTTGAAGCTAATTACTCCATAA 59.459 38.462 0.00 0.00 0.00 1.90
78 79 7.254795 CCCGTTTGAAGCTAATTACTCCATAAG 60.255 40.741 0.00 0.00 0.00 1.73
79 80 7.254795 CCGTTTGAAGCTAATTACTCCATAAGG 60.255 40.741 0.00 0.00 0.00 2.69
80 81 7.254795 CGTTTGAAGCTAATTACTCCATAAGGG 60.255 40.741 0.00 0.00 34.83 3.95
81 82 7.446106 TTGAAGCTAATTACTCCATAAGGGA 57.554 36.000 0.00 0.00 45.89 4.20
93 94 5.450818 TCCATAAGGGAGTAACAGCAATT 57.549 39.130 0.00 0.00 42.15 2.32
94 95 5.826643 TCCATAAGGGAGTAACAGCAATTT 58.173 37.500 0.00 0.00 42.15 1.82
95 96 6.252995 TCCATAAGGGAGTAACAGCAATTTT 58.747 36.000 0.00 0.00 42.15 1.82
96 97 7.406916 TCCATAAGGGAGTAACAGCAATTTTA 58.593 34.615 0.00 0.00 42.15 1.52
97 98 8.058847 TCCATAAGGGAGTAACAGCAATTTTAT 58.941 33.333 0.00 0.00 42.15 1.40
98 99 8.695456 CCATAAGGGAGTAACAGCAATTTTATT 58.305 33.333 0.00 0.00 40.01 1.40
102 103 8.879427 AGGGAGTAACAGCAATTTTATTTACT 57.121 30.769 0.00 0.00 33.50 2.24
103 104 9.969001 AGGGAGTAACAGCAATTTTATTTACTA 57.031 29.630 0.00 0.00 31.51 1.82
128 129 6.685527 ATTAAAGTTGCTAAGCTAAGAGCC 57.314 37.500 11.48 0.00 43.77 4.70
129 130 2.700722 AGTTGCTAAGCTAAGAGCCC 57.299 50.000 11.48 4.11 43.77 5.19
130 131 1.210722 AGTTGCTAAGCTAAGAGCCCC 59.789 52.381 11.48 3.82 43.77 5.80
131 132 0.546598 TTGCTAAGCTAAGAGCCCCC 59.453 55.000 11.48 0.00 43.77 5.40
132 133 0.326618 TGCTAAGCTAAGAGCCCCCT 60.327 55.000 11.48 0.00 43.77 4.79
133 134 0.394938 GCTAAGCTAAGAGCCCCCTC 59.605 60.000 4.25 0.00 43.77 4.30
134 135 1.052617 CTAAGCTAAGAGCCCCCTCC 58.947 60.000 0.00 0.00 43.77 4.30
135 136 0.642710 TAAGCTAAGAGCCCCCTCCT 59.357 55.000 0.00 0.00 43.77 3.69
136 137 0.253394 AAGCTAAGAGCCCCCTCCTT 60.253 55.000 0.00 0.00 43.77 3.36
137 138 0.253394 AGCTAAGAGCCCCCTCCTTT 60.253 55.000 0.00 0.00 43.77 3.11
138 139 0.626382 GCTAAGAGCCCCCTCCTTTT 59.374 55.000 0.00 0.00 38.96 2.27
139 140 1.683319 GCTAAGAGCCCCCTCCTTTTG 60.683 57.143 0.00 0.00 38.96 2.44
140 141 1.916181 CTAAGAGCCCCCTCCTTTTGA 59.084 52.381 0.00 0.00 38.96 2.69
141 142 1.158007 AAGAGCCCCCTCCTTTTGAA 58.842 50.000 0.00 0.00 38.96 2.69
142 143 1.387119 AGAGCCCCCTCCTTTTGAAT 58.613 50.000 0.00 0.00 38.96 2.57
143 144 1.718801 AGAGCCCCCTCCTTTTGAATT 59.281 47.619 0.00 0.00 38.96 2.17
144 145 2.112511 AGAGCCCCCTCCTTTTGAATTT 59.887 45.455 0.00 0.00 38.96 1.82
145 146 2.906389 GAGCCCCCTCCTTTTGAATTTT 59.094 45.455 0.00 0.00 31.68 1.82
146 147 3.326521 AGCCCCCTCCTTTTGAATTTTT 58.673 40.909 0.00 0.00 0.00 1.94
168 169 6.665474 TTTTAGTGCTTCACGAAGTTAACA 57.335 33.333 8.61 0.00 41.61 2.41
169 170 5.646467 TTAGTGCTTCACGAAGTTAACAC 57.354 39.130 8.61 7.65 41.61 3.32
170 171 3.793559 AGTGCTTCACGAAGTTAACACT 58.206 40.909 8.61 9.52 41.61 3.55
171 172 3.802685 AGTGCTTCACGAAGTTAACACTC 59.197 43.478 8.61 3.12 41.61 3.51
172 173 3.554324 GTGCTTCACGAAGTTAACACTCA 59.446 43.478 8.61 0.00 41.61 3.41
173 174 3.554324 TGCTTCACGAAGTTAACACTCAC 59.446 43.478 8.61 0.00 41.61 3.51
174 175 3.554324 GCTTCACGAAGTTAACACTCACA 59.446 43.478 8.61 0.00 41.61 3.58
175 176 4.550255 GCTTCACGAAGTTAACACTCACAC 60.550 45.833 8.61 0.00 41.61 3.82
176 177 3.110358 TCACGAAGTTAACACTCACACG 58.890 45.455 8.61 5.21 41.61 4.49
177 178 1.856597 ACGAAGTTAACACTCACACGC 59.143 47.619 8.61 0.00 37.78 5.34
178 179 1.136992 CGAAGTTAACACTCACACGCG 60.137 52.381 3.53 3.53 30.45 6.01
179 180 2.121786 GAAGTTAACACTCACACGCGA 58.878 47.619 15.93 0.00 30.45 5.87
180 181 1.484356 AGTTAACACTCACACGCGAC 58.516 50.000 15.93 0.00 0.00 5.19
181 182 1.202203 GTTAACACTCACACGCGACA 58.798 50.000 15.93 0.00 0.00 4.35
182 183 1.589320 GTTAACACTCACACGCGACAA 59.411 47.619 15.93 0.00 0.00 3.18
183 184 1.202203 TAACACTCACACGCGACAAC 58.798 50.000 15.93 0.00 0.00 3.32
184 185 0.738063 AACACTCACACGCGACAACA 60.738 50.000 15.93 0.00 0.00 3.33
185 186 0.738063 ACACTCACACGCGACAACAA 60.738 50.000 15.93 0.00 0.00 2.83
186 187 0.581529 CACTCACACGCGACAACAAT 59.418 50.000 15.93 0.00 0.00 2.71
187 188 1.003972 CACTCACACGCGACAACAATT 60.004 47.619 15.93 0.00 0.00 2.32
188 189 2.219903 CACTCACACGCGACAACAATTA 59.780 45.455 15.93 0.00 0.00 1.40
189 190 2.867368 ACTCACACGCGACAACAATTAA 59.133 40.909 15.93 0.00 0.00 1.40
190 191 3.215244 CTCACACGCGACAACAATTAAC 58.785 45.455 15.93 0.00 0.00 2.01
191 192 2.608090 TCACACGCGACAACAATTAACA 59.392 40.909 15.93 0.00 0.00 2.41
192 193 2.964123 CACACGCGACAACAATTAACAG 59.036 45.455 15.93 0.00 0.00 3.16
193 194 2.610374 ACACGCGACAACAATTAACAGT 59.390 40.909 15.93 0.00 0.00 3.55
194 195 3.064271 ACACGCGACAACAATTAACAGTT 59.936 39.130 15.93 0.00 0.00 3.16
195 196 3.657625 CACGCGACAACAATTAACAGTTC 59.342 43.478 15.93 0.00 0.00 3.01
196 197 3.223157 CGCGACAACAATTAACAGTTCC 58.777 45.455 0.00 0.00 0.00 3.62
197 198 3.561503 GCGACAACAATTAACAGTTCCC 58.438 45.455 0.00 0.00 0.00 3.97
198 199 3.610821 GCGACAACAATTAACAGTTCCCC 60.611 47.826 0.00 0.00 0.00 4.81
199 200 3.566322 CGACAACAATTAACAGTTCCCCA 59.434 43.478 0.00 0.00 0.00 4.96
200 201 4.036971 CGACAACAATTAACAGTTCCCCAA 59.963 41.667 0.00 0.00 0.00 4.12
201 202 5.450688 CGACAACAATTAACAGTTCCCCAAA 60.451 40.000 0.00 0.00 0.00 3.28
202 203 6.301169 ACAACAATTAACAGTTCCCCAAAA 57.699 33.333 0.00 0.00 0.00 2.44
203 204 6.712276 ACAACAATTAACAGTTCCCCAAAAA 58.288 32.000 0.00 0.00 0.00 1.94
204 205 7.342581 ACAACAATTAACAGTTCCCCAAAAAT 58.657 30.769 0.00 0.00 0.00 1.82
205 206 7.281999 ACAACAATTAACAGTTCCCCAAAAATG 59.718 33.333 0.00 0.00 0.00 2.32
206 207 7.130681 ACAATTAACAGTTCCCCAAAAATGA 57.869 32.000 0.00 0.00 0.00 2.57
207 208 7.569240 ACAATTAACAGTTCCCCAAAAATGAA 58.431 30.769 0.00 0.00 0.00 2.57
208 209 8.217111 ACAATTAACAGTTCCCCAAAAATGAAT 58.783 29.630 0.00 0.00 0.00 2.57
209 210 9.717942 CAATTAACAGTTCCCCAAAAATGAATA 57.282 29.630 0.00 0.00 0.00 1.75
210 211 9.942850 AATTAACAGTTCCCCAAAAATGAATAG 57.057 29.630 0.00 0.00 0.00 1.73
211 212 6.994421 AACAGTTCCCCAAAAATGAATAGT 57.006 33.333 0.00 0.00 0.00 2.12
212 213 9.589461 TTAACAGTTCCCCAAAAATGAATAGTA 57.411 29.630 0.00 0.00 0.00 1.82
213 214 7.462571 ACAGTTCCCCAAAAATGAATAGTAC 57.537 36.000 0.00 0.00 0.00 2.73
214 215 7.238710 ACAGTTCCCCAAAAATGAATAGTACT 58.761 34.615 0.00 0.00 0.00 2.73
215 216 7.728532 ACAGTTCCCCAAAAATGAATAGTACTT 59.271 33.333 0.00 0.00 0.00 2.24
216 217 8.244113 CAGTTCCCCAAAAATGAATAGTACTTC 58.756 37.037 0.00 0.00 0.00 3.01
217 218 7.396339 AGTTCCCCAAAAATGAATAGTACTTCC 59.604 37.037 0.00 0.00 0.00 3.46
218 219 7.039722 TCCCCAAAAATGAATAGTACTTCCT 57.960 36.000 0.00 0.00 0.00 3.36
219 220 7.116736 TCCCCAAAAATGAATAGTACTTCCTC 58.883 38.462 0.00 0.00 0.00 3.71
220 221 7.036863 TCCCCAAAAATGAATAGTACTTCCTCT 60.037 37.037 0.00 0.00 0.00 3.69
221 222 7.615757 CCCCAAAAATGAATAGTACTTCCTCTT 59.384 37.037 0.00 0.00 0.00 2.85
222 223 9.025041 CCCAAAAATGAATAGTACTTCCTCTTT 57.975 33.333 0.00 0.00 0.00 2.52
225 226 9.914131 AAAAATGAATAGTACTTCCTCTTTTGC 57.086 29.630 0.00 0.00 0.00 3.68
226 227 6.910536 ATGAATAGTACTTCCTCTTTTGCG 57.089 37.500 0.00 0.00 0.00 4.85
227 228 5.175859 TGAATAGTACTTCCTCTTTTGCGG 58.824 41.667 0.00 0.00 0.00 5.69
228 229 4.820894 ATAGTACTTCCTCTTTTGCGGT 57.179 40.909 0.00 0.00 0.00 5.68
229 230 3.487120 AGTACTTCCTCTTTTGCGGTT 57.513 42.857 0.00 0.00 0.00 4.44
230 231 3.816994 AGTACTTCCTCTTTTGCGGTTT 58.183 40.909 0.00 0.00 0.00 3.27
231 232 4.964593 AGTACTTCCTCTTTTGCGGTTTA 58.035 39.130 0.00 0.00 0.00 2.01
232 233 5.557866 AGTACTTCCTCTTTTGCGGTTTAT 58.442 37.500 0.00 0.00 0.00 1.40
233 234 6.704310 AGTACTTCCTCTTTTGCGGTTTATA 58.296 36.000 0.00 0.00 0.00 0.98
234 235 6.817140 AGTACTTCCTCTTTTGCGGTTTATAG 59.183 38.462 0.00 0.00 0.00 1.31
235 236 4.941873 ACTTCCTCTTTTGCGGTTTATAGG 59.058 41.667 0.00 0.00 0.00 2.57
236 237 4.563140 TCCTCTTTTGCGGTTTATAGGT 57.437 40.909 0.00 0.00 0.00 3.08
237 238 4.510571 TCCTCTTTTGCGGTTTATAGGTC 58.489 43.478 0.00 0.00 0.00 3.85
238 239 4.224370 TCCTCTTTTGCGGTTTATAGGTCT 59.776 41.667 0.00 0.00 0.00 3.85
239 240 4.941873 CCTCTTTTGCGGTTTATAGGTCTT 59.058 41.667 0.00 0.00 0.00 3.01
240 241 6.070653 TCCTCTTTTGCGGTTTATAGGTCTTA 60.071 38.462 0.00 0.00 0.00 2.10
241 242 6.766467 CCTCTTTTGCGGTTTATAGGTCTTAT 59.234 38.462 0.00 0.00 0.00 1.73
242 243 7.041984 CCTCTTTTGCGGTTTATAGGTCTTATC 60.042 40.741 0.00 0.00 0.00 1.75
243 244 7.562135 TCTTTTGCGGTTTATAGGTCTTATCT 58.438 34.615 0.00 0.00 0.00 1.98
244 245 7.709613 TCTTTTGCGGTTTATAGGTCTTATCTC 59.290 37.037 0.00 0.00 0.00 2.75
245 246 6.474140 TTGCGGTTTATAGGTCTTATCTCA 57.526 37.500 0.00 0.00 0.00 3.27
246 247 6.474140 TGCGGTTTATAGGTCTTATCTCAA 57.526 37.500 0.00 0.00 0.00 3.02
247 248 6.880484 TGCGGTTTATAGGTCTTATCTCAAA 58.120 36.000 0.00 0.00 0.00 2.69
248 249 7.332557 TGCGGTTTATAGGTCTTATCTCAAAA 58.667 34.615 0.00 0.00 0.00 2.44
249 250 7.990886 TGCGGTTTATAGGTCTTATCTCAAAAT 59.009 33.333 0.00 0.00 0.00 1.82
250 251 8.837389 GCGGTTTATAGGTCTTATCTCAAAATT 58.163 33.333 0.00 0.00 0.00 1.82
293 294 7.913674 AAGTCTCAATTTGATGGTTCTCTAC 57.086 36.000 0.00 0.00 0.00 2.59
305 306 4.537135 GGTTCTCTACCACATGTTCAGA 57.463 45.455 0.00 0.00 46.92 3.27
306 307 5.091261 GGTTCTCTACCACATGTTCAGAT 57.909 43.478 0.00 0.00 46.92 2.90
307 308 5.491982 GGTTCTCTACCACATGTTCAGATT 58.508 41.667 0.00 0.00 46.92 2.40
308 309 5.940470 GGTTCTCTACCACATGTTCAGATTT 59.060 40.000 0.00 0.00 46.92 2.17
309 310 6.431234 GGTTCTCTACCACATGTTCAGATTTT 59.569 38.462 0.00 0.00 46.92 1.82
310 311 7.606456 GGTTCTCTACCACATGTTCAGATTTTA 59.394 37.037 0.00 0.00 46.92 1.52
311 312 8.999431 GTTCTCTACCACATGTTCAGATTTTAA 58.001 33.333 0.00 0.00 0.00 1.52
312 313 8.777865 TCTCTACCACATGTTCAGATTTTAAG 57.222 34.615 0.00 0.00 0.00 1.85
313 314 7.824289 TCTCTACCACATGTTCAGATTTTAAGG 59.176 37.037 0.00 0.00 0.00 2.69
314 315 7.458397 TCTACCACATGTTCAGATTTTAAGGT 58.542 34.615 0.00 0.00 0.00 3.50
315 316 6.331369 ACCACATGTTCAGATTTTAAGGTG 57.669 37.500 0.00 0.00 0.00 4.00
316 317 5.163513 CCACATGTTCAGATTTTAAGGTGC 58.836 41.667 0.00 0.00 0.00 5.01
317 318 5.278907 CCACATGTTCAGATTTTAAGGTGCA 60.279 40.000 0.00 0.00 0.00 4.57
318 319 6.392354 CACATGTTCAGATTTTAAGGTGCAT 58.608 36.000 0.00 0.00 0.00 3.96
319 320 6.869913 CACATGTTCAGATTTTAAGGTGCATT 59.130 34.615 0.00 0.00 0.00 3.56
320 321 8.028354 CACATGTTCAGATTTTAAGGTGCATTA 58.972 33.333 0.00 0.00 0.00 1.90
321 322 8.584157 ACATGTTCAGATTTTAAGGTGCATTAA 58.416 29.630 0.00 0.00 0.00 1.40
322 323 9.421806 CATGTTCAGATTTTAAGGTGCATTAAA 57.578 29.630 1.89 1.89 33.83 1.52
324 325 9.638239 TGTTCAGATTTTAAGGTGCATTAAATC 57.362 29.630 6.16 8.96 35.24 2.17
325 326 9.638239 GTTCAGATTTTAAGGTGCATTAAATCA 57.362 29.630 16.80 3.54 35.24 2.57
329 330 9.101655 AGATTTTAAGGTGCATTAAATCATTGC 57.898 29.630 16.80 0.00 35.24 3.56
330 331 8.789825 ATTTTAAGGTGCATTAAATCATTGCA 57.210 26.923 6.16 0.00 43.63 4.08
331 332 8.789825 TTTTAAGGTGCATTAAATCATTGCAT 57.210 26.923 4.14 0.00 46.90 3.96
332 333 7.773864 TTAAGGTGCATTAAATCATTGCATG 57.226 32.000 4.14 0.00 46.90 4.06
333 334 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
334 335 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
335 336 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
336 337 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
337 338 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
338 339 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
339 340 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
340 341 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
341 342 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
346 347 9.656040 AAATCATTGCATGCAAGTATTAAGAAA 57.344 25.926 34.15 10.85 39.47 2.52
347 348 9.656040 AATCATTGCATGCAAGTATTAAGAAAA 57.344 25.926 34.15 10.64 39.47 2.29
348 349 9.656040 ATCATTGCATGCAAGTATTAAGAAAAA 57.344 25.926 34.15 10.19 39.47 1.94
439 440 9.737427 TTTAAGAAAAACGAGTGCATTAATTGA 57.263 25.926 0.00 0.00 0.00 2.57
440 441 7.858052 AAGAAAAACGAGTGCATTAATTGAG 57.142 32.000 0.00 0.00 0.00 3.02
441 442 6.970484 AGAAAAACGAGTGCATTAATTGAGT 58.030 32.000 0.00 0.00 0.00 3.41
442 443 6.857964 AGAAAAACGAGTGCATTAATTGAGTG 59.142 34.615 0.00 0.00 0.00 3.51
443 444 5.689383 AAACGAGTGCATTAATTGAGTGT 57.311 34.783 0.00 0.00 0.00 3.55
444 445 5.689383 AACGAGTGCATTAATTGAGTGTT 57.311 34.783 0.00 0.00 0.00 3.32
445 446 5.689383 ACGAGTGCATTAATTGAGTGTTT 57.311 34.783 0.00 0.00 0.00 2.83
446 447 6.072112 ACGAGTGCATTAATTGAGTGTTTT 57.928 33.333 0.00 0.00 0.00 2.43
447 448 6.503524 ACGAGTGCATTAATTGAGTGTTTTT 58.496 32.000 0.00 0.00 0.00 1.94
448 449 6.417635 ACGAGTGCATTAATTGAGTGTTTTTG 59.582 34.615 0.00 0.00 0.00 2.44
449 450 6.529463 AGTGCATTAATTGAGTGTTTTTGC 57.471 33.333 0.00 0.00 0.00 3.68
450 451 6.047870 AGTGCATTAATTGAGTGTTTTTGCA 58.952 32.000 0.00 0.00 35.42 4.08
451 452 6.538021 AGTGCATTAATTGAGTGTTTTTGCAA 59.462 30.769 0.00 0.00 39.06 4.08
452 453 7.065563 AGTGCATTAATTGAGTGTTTTTGCAAA 59.934 29.630 8.05 8.05 39.06 3.68
453 454 7.164008 GTGCATTAATTGAGTGTTTTTGCAAAC 59.836 33.333 12.39 2.38 42.49 2.93
454 455 7.065563 TGCATTAATTGAGTGTTTTTGCAAACT 59.934 29.630 12.39 6.26 42.61 2.66
455 456 8.547069 GCATTAATTGAGTGTTTTTGCAAACTA 58.453 29.630 12.39 0.00 42.61 2.24
480 481 6.933514 AAAAATTATTCCACCACTCACCAT 57.066 33.333 0.00 0.00 0.00 3.55
481 482 6.530019 AAAATTATTCCACCACTCACCATC 57.470 37.500 0.00 0.00 0.00 3.51
482 483 5.456921 AATTATTCCACCACTCACCATCT 57.543 39.130 0.00 0.00 0.00 2.90
483 484 6.575244 AATTATTCCACCACTCACCATCTA 57.425 37.500 0.00 0.00 0.00 1.98
484 485 3.914426 ATTCCACCACTCACCATCTAC 57.086 47.619 0.00 0.00 0.00 2.59
485 486 1.568504 TCCACCACTCACCATCTACC 58.431 55.000 0.00 0.00 0.00 3.18
486 487 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.00 0.00 0.00 3.08
487 488 1.909302 CCACCACTCACCATCTACCTT 59.091 52.381 0.00 0.00 0.00 3.50
488 489 2.355108 CCACCACTCACCATCTACCTTG 60.355 54.545 0.00 0.00 0.00 3.61
489 490 2.567169 CACCACTCACCATCTACCTTGA 59.433 50.000 0.00 0.00 0.00 3.02
490 491 3.198635 CACCACTCACCATCTACCTTGAT 59.801 47.826 0.00 0.00 0.00 2.57
491 492 3.846588 ACCACTCACCATCTACCTTGATT 59.153 43.478 0.00 0.00 0.00 2.57
492 493 4.194640 CCACTCACCATCTACCTTGATTG 58.805 47.826 0.00 0.00 0.00 2.67
493 494 4.080919 CCACTCACCATCTACCTTGATTGA 60.081 45.833 0.00 0.00 0.00 2.57
494 495 5.397221 CCACTCACCATCTACCTTGATTGAT 60.397 44.000 0.00 0.00 0.00 2.57
495 496 5.526479 CACTCACCATCTACCTTGATTGATG 59.474 44.000 0.00 0.00 36.87 3.07
496 497 5.426509 ACTCACCATCTACCTTGATTGATGA 59.573 40.000 0.00 0.00 38.72 2.92
497 498 5.922053 TCACCATCTACCTTGATTGATGAG 58.078 41.667 0.00 0.00 38.72 2.90
498 499 5.662657 TCACCATCTACCTTGATTGATGAGA 59.337 40.000 0.00 0.00 38.72 3.27
499 500 6.328410 TCACCATCTACCTTGATTGATGAGAT 59.672 38.462 0.00 0.00 38.72 2.75
500 501 6.996879 CACCATCTACCTTGATTGATGAGATT 59.003 38.462 0.00 0.00 38.72 2.40
501 502 7.501559 CACCATCTACCTTGATTGATGAGATTT 59.498 37.037 0.00 0.00 38.72 2.17
502 503 8.057623 ACCATCTACCTTGATTGATGAGATTTT 58.942 33.333 0.00 0.00 38.72 1.82
503 504 8.910944 CCATCTACCTTGATTGATGAGATTTTT 58.089 33.333 0.00 0.00 38.72 1.94
504 505 9.731819 CATCTACCTTGATTGATGAGATTTTTG 57.268 33.333 0.00 0.00 38.72 2.44
505 506 9.690913 ATCTACCTTGATTGATGAGATTTTTGA 57.309 29.630 0.00 0.00 0.00 2.69
506 507 9.519191 TCTACCTTGATTGATGAGATTTTTGAA 57.481 29.630 0.00 0.00 0.00 2.69
509 510 9.431887 ACCTTGATTGATGAGATTTTTGAATTG 57.568 29.630 0.00 0.00 0.00 2.32
510 511 9.647797 CCTTGATTGATGAGATTTTTGAATTGA 57.352 29.630 0.00 0.00 0.00 2.57
512 513 8.697846 TGATTGATGAGATTTTTGAATTGAGC 57.302 30.769 0.00 0.00 0.00 4.26
513 514 7.762615 TGATTGATGAGATTTTTGAATTGAGCC 59.237 33.333 0.00 0.00 0.00 4.70
514 515 5.969423 TGATGAGATTTTTGAATTGAGCCC 58.031 37.500 0.00 0.00 0.00 5.19
515 516 5.718130 TGATGAGATTTTTGAATTGAGCCCT 59.282 36.000 0.00 0.00 0.00 5.19
516 517 6.891361 TGATGAGATTTTTGAATTGAGCCCTA 59.109 34.615 0.00 0.00 0.00 3.53
517 518 7.562454 TGATGAGATTTTTGAATTGAGCCCTAT 59.438 33.333 0.00 0.00 0.00 2.57
518 519 9.071276 GATGAGATTTTTGAATTGAGCCCTATA 57.929 33.333 0.00 0.00 0.00 1.31
519 520 8.821686 TGAGATTTTTGAATTGAGCCCTATAA 57.178 30.769 0.00 0.00 0.00 0.98
520 521 9.253832 TGAGATTTTTGAATTGAGCCCTATAAA 57.746 29.630 0.00 0.00 0.00 1.40
521 522 9.521503 GAGATTTTTGAATTGAGCCCTATAAAC 57.478 33.333 0.00 0.00 0.00 2.01
522 523 8.478066 AGATTTTTGAATTGAGCCCTATAAACC 58.522 33.333 0.00 0.00 0.00 3.27
523 524 5.828299 TTTGAATTGAGCCCTATAAACCG 57.172 39.130 0.00 0.00 0.00 4.44
524 525 4.497291 TGAATTGAGCCCTATAAACCGT 57.503 40.909 0.00 0.00 0.00 4.83
525 526 5.617528 TGAATTGAGCCCTATAAACCGTA 57.382 39.130 0.00 0.00 0.00 4.02
526 527 5.991861 TGAATTGAGCCCTATAAACCGTAA 58.008 37.500 0.00 0.00 0.00 3.18
527 528 6.416415 TGAATTGAGCCCTATAAACCGTAAA 58.584 36.000 0.00 0.00 0.00 2.01
528 529 6.540914 TGAATTGAGCCCTATAAACCGTAAAG 59.459 38.462 0.00 0.00 0.00 1.85
530 531 4.032310 TGAGCCCTATAAACCGTAAAGGA 58.968 43.478 0.00 0.00 45.00 3.36
531 532 4.100498 TGAGCCCTATAAACCGTAAAGGAG 59.900 45.833 0.00 0.00 45.00 3.69
532 533 3.390311 AGCCCTATAAACCGTAAAGGAGG 59.610 47.826 0.00 0.00 45.00 4.30
533 534 3.135348 GCCCTATAAACCGTAAAGGAGGT 59.865 47.826 0.00 0.00 45.00 3.85
534 535 4.344968 GCCCTATAAACCGTAAAGGAGGTA 59.655 45.833 0.00 0.00 45.00 3.08
535 536 5.510349 GCCCTATAAACCGTAAAGGAGGTAG 60.510 48.000 0.00 0.00 45.00 3.18
536 537 5.600069 CCCTATAAACCGTAAAGGAGGTAGT 59.400 44.000 0.00 0.00 45.00 2.73
537 538 6.777580 CCCTATAAACCGTAAAGGAGGTAGTA 59.222 42.308 0.00 0.00 45.00 1.82
538 539 7.255625 CCCTATAAACCGTAAAGGAGGTAGTAC 60.256 44.444 0.00 0.00 45.00 2.73
539 540 4.808414 AAACCGTAAAGGAGGTAGTACC 57.192 45.455 11.73 11.73 45.00 3.34
550 551 2.892784 GGTAGTACCTCCACATCTGC 57.107 55.000 12.41 0.00 34.73 4.26
551 552 1.413077 GGTAGTACCTCCACATCTGCC 59.587 57.143 12.41 0.00 34.73 4.85
552 553 2.389715 GTAGTACCTCCACATCTGCCT 58.610 52.381 0.00 0.00 0.00 4.75
553 554 1.490574 AGTACCTCCACATCTGCCTC 58.509 55.000 0.00 0.00 0.00 4.70
554 555 1.007721 AGTACCTCCACATCTGCCTCT 59.992 52.381 0.00 0.00 0.00 3.69
555 556 2.245028 AGTACCTCCACATCTGCCTCTA 59.755 50.000 0.00 0.00 0.00 2.43
556 557 1.490574 ACCTCCACATCTGCCTCTAC 58.509 55.000 0.00 0.00 0.00 2.59
557 558 0.755686 CCTCCACATCTGCCTCTACC 59.244 60.000 0.00 0.00 0.00 3.18
558 559 0.755686 CTCCACATCTGCCTCTACCC 59.244 60.000 0.00 0.00 0.00 3.69
559 560 1.043116 TCCACATCTGCCTCTACCCG 61.043 60.000 0.00 0.00 0.00 5.28
560 561 1.227380 CACATCTGCCTCTACCCGC 60.227 63.158 0.00 0.00 0.00 6.13
561 562 2.423446 CATCTGCCTCTACCCGCC 59.577 66.667 0.00 0.00 0.00 6.13
562 563 3.227276 ATCTGCCTCTACCCGCCG 61.227 66.667 0.00 0.00 0.00 6.46
568 569 4.430765 CTCTACCCGCCGCGTTGT 62.431 66.667 12.58 10.92 0.00 3.32
569 570 4.728102 TCTACCCGCCGCGTTGTG 62.728 66.667 12.58 0.00 0.00 3.33
599 600 0.099436 CGGCAACTGCTGGATTTAGC 59.901 55.000 2.37 0.00 43.47 3.09
600 601 0.457443 GGCAACTGCTGGATTTAGCC 59.543 55.000 1.06 0.00 43.02 3.93
601 602 0.099436 GCAACTGCTGGATTTAGCCG 59.901 55.000 0.00 0.00 43.02 5.52
602 603 0.099436 CAACTGCTGGATTTAGCCGC 59.901 55.000 0.00 0.00 43.02 6.53
603 604 1.032114 AACTGCTGGATTTAGCCGCC 61.032 55.000 0.00 0.00 43.02 6.13
604 605 2.513666 TGCTGGATTTAGCCGCCG 60.514 61.111 0.00 0.00 43.02 6.46
605 606 2.513897 GCTGGATTTAGCCGCCGT 60.514 61.111 0.00 0.00 37.73 5.68
606 607 2.534903 GCTGGATTTAGCCGCCGTC 61.535 63.158 0.00 0.00 37.73 4.79
607 608 1.153449 CTGGATTTAGCCGCCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
608 609 1.429148 CTGGATTTAGCCGCCGTCAC 61.429 60.000 0.00 0.00 0.00 3.67
609 610 1.153429 GGATTTAGCCGCCGTCACT 60.153 57.895 0.00 0.00 0.00 3.41
610 611 1.152383 GGATTTAGCCGCCGTCACTC 61.152 60.000 0.00 0.00 0.00 3.51
611 612 0.179108 GATTTAGCCGCCGTCACTCT 60.179 55.000 0.00 0.00 0.00 3.24
612 613 0.179108 ATTTAGCCGCCGTCACTCTC 60.179 55.000 0.00 0.00 0.00 3.20
613 614 2.221906 TTTAGCCGCCGTCACTCTCC 62.222 60.000 0.00 0.00 0.00 3.71
616 617 3.382832 CCGCCGTCACTCTCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
617 618 2.125912 CGCCGTCACTCTCCCTTG 60.126 66.667 0.00 0.00 0.00 3.61
618 619 2.932234 CGCCGTCACTCTCCCTTGT 61.932 63.158 0.00 0.00 0.00 3.16
619 620 1.374758 GCCGTCACTCTCCCTTGTG 60.375 63.158 0.00 0.00 35.68 3.33
620 621 1.374758 CCGTCACTCTCCCTTGTGC 60.375 63.158 0.00 0.00 34.49 4.57
621 622 1.734477 CGTCACTCTCCCTTGTGCG 60.734 63.158 0.00 0.00 34.49 5.34
622 623 1.367840 GTCACTCTCCCTTGTGCGT 59.632 57.895 0.00 0.00 34.49 5.24
623 624 0.946221 GTCACTCTCCCTTGTGCGTG 60.946 60.000 0.00 0.00 34.49 5.34
624 625 1.669115 CACTCTCCCTTGTGCGTGG 60.669 63.158 0.00 0.00 0.00 4.94
625 626 2.743928 CTCTCCCTTGTGCGTGGC 60.744 66.667 0.00 0.00 0.00 5.01
626 627 4.329545 TCTCCCTTGTGCGTGGCC 62.330 66.667 0.00 0.00 0.00 5.36
631 632 4.988598 CTTGTGCGTGGCCGGTCT 62.989 66.667 7.97 0.00 33.68 3.85
638 639 2.904866 GTGGCCGGTCTGCAACAA 60.905 61.111 7.97 0.00 35.16 2.83
639 640 2.124109 TGGCCGGTCTGCAACAAA 60.124 55.556 7.97 0.00 0.00 2.83
640 641 2.335011 GGCCGGTCTGCAACAAAC 59.665 61.111 1.90 0.00 0.00 2.93
641 642 2.335011 GCCGGTCTGCAACAAACC 59.665 61.111 1.90 0.00 0.00 3.27
642 643 3.039134 CCGGTCTGCAACAAACCC 58.961 61.111 0.00 0.00 0.00 4.11
643 644 1.528309 CCGGTCTGCAACAAACCCT 60.528 57.895 0.00 0.00 0.00 4.34
644 645 1.106944 CCGGTCTGCAACAAACCCTT 61.107 55.000 0.00 0.00 0.00 3.95
645 646 0.744281 CGGTCTGCAACAAACCCTTT 59.256 50.000 0.00 0.00 0.00 3.11
646 647 1.535860 CGGTCTGCAACAAACCCTTTG 60.536 52.381 0.00 0.00 45.95 2.77
654 655 2.990642 CAAACCCTTTGTTGCAGCC 58.009 52.632 0.00 0.00 37.23 4.85
655 656 0.875474 CAAACCCTTTGTTGCAGCCG 60.875 55.000 0.00 0.00 37.23 5.52
656 657 1.040339 AAACCCTTTGTTGCAGCCGA 61.040 50.000 0.00 0.00 37.23 5.54
657 658 1.455383 AACCCTTTGTTGCAGCCGAG 61.455 55.000 0.00 0.00 35.31 4.63
658 659 2.256461 CCTTTGTTGCAGCCGAGC 59.744 61.111 0.00 0.00 0.00 5.03
659 660 2.256461 CTTTGTTGCAGCCGAGCC 59.744 61.111 0.00 0.00 0.00 4.70
660 661 2.518112 TTTGTTGCAGCCGAGCCA 60.518 55.556 0.00 0.00 0.00 4.75
661 662 2.467946 CTTTGTTGCAGCCGAGCCAG 62.468 60.000 0.00 0.00 0.00 4.85
668 669 2.673523 AGCCGAGCCAGCTGAAAT 59.326 55.556 17.39 0.00 39.69 2.17
669 670 1.907739 AGCCGAGCCAGCTGAAATA 59.092 52.632 17.39 0.00 39.69 1.40
670 671 0.253044 AGCCGAGCCAGCTGAAATAA 59.747 50.000 17.39 0.00 39.69 1.40
671 672 0.659957 GCCGAGCCAGCTGAAATAAG 59.340 55.000 17.39 0.00 0.00 1.73
672 673 1.303309 CCGAGCCAGCTGAAATAAGG 58.697 55.000 17.39 6.90 0.00 2.69
673 674 1.134401 CCGAGCCAGCTGAAATAAGGA 60.134 52.381 17.39 0.00 0.00 3.36
674 675 1.936547 CGAGCCAGCTGAAATAAGGAC 59.063 52.381 17.39 0.00 0.00 3.85
675 676 2.293170 GAGCCAGCTGAAATAAGGACC 58.707 52.381 17.39 0.00 0.00 4.46
676 677 1.635487 AGCCAGCTGAAATAAGGACCA 59.365 47.619 17.39 0.00 0.00 4.02
677 678 2.041620 AGCCAGCTGAAATAAGGACCAA 59.958 45.455 17.39 0.00 0.00 3.67
678 679 2.825532 GCCAGCTGAAATAAGGACCAAA 59.174 45.455 17.39 0.00 0.00 3.28
679 680 3.448660 GCCAGCTGAAATAAGGACCAAAT 59.551 43.478 17.39 0.00 0.00 2.32
680 681 4.081476 GCCAGCTGAAATAAGGACCAAATT 60.081 41.667 17.39 0.00 0.00 1.82
681 682 5.413499 CCAGCTGAAATAAGGACCAAATTG 58.587 41.667 17.39 0.00 0.00 2.32
682 683 5.185635 CCAGCTGAAATAAGGACCAAATTGA 59.814 40.000 17.39 0.00 0.00 2.57
683 684 6.295236 CCAGCTGAAATAAGGACCAAATTGAA 60.295 38.462 17.39 0.00 0.00 2.69
684 685 7.153985 CAGCTGAAATAAGGACCAAATTGAAA 58.846 34.615 8.42 0.00 0.00 2.69
685 686 7.656948 CAGCTGAAATAAGGACCAAATTGAAAA 59.343 33.333 8.42 0.00 0.00 2.29
686 687 8.210265 AGCTGAAATAAGGACCAAATTGAAAAA 58.790 29.630 0.00 0.00 0.00 1.94
706 707 6.884280 AAAAACTGAACTGGGTAGAGATTG 57.116 37.500 0.00 0.00 0.00 2.67
707 708 3.618690 ACTGAACTGGGTAGAGATTGC 57.381 47.619 0.00 0.00 0.00 3.56
708 709 3.177228 ACTGAACTGGGTAGAGATTGCT 58.823 45.455 0.00 0.00 0.00 3.91
709 710 3.196685 ACTGAACTGGGTAGAGATTGCTC 59.803 47.826 0.00 0.00 41.62 4.26
710 711 2.166459 TGAACTGGGTAGAGATTGCTCG 59.834 50.000 0.00 0.00 45.98 5.03
711 712 1.853963 ACTGGGTAGAGATTGCTCGT 58.146 50.000 0.00 0.00 45.98 4.18
712 713 1.478510 ACTGGGTAGAGATTGCTCGTG 59.521 52.381 0.00 0.00 45.98 4.35
713 714 1.751351 CTGGGTAGAGATTGCTCGTGA 59.249 52.381 0.00 0.00 45.98 4.35
714 715 1.751351 TGGGTAGAGATTGCTCGTGAG 59.249 52.381 0.00 0.00 45.98 3.51
726 727 2.643933 CTCGTGAGCTGTCTGATCAA 57.356 50.000 0.00 0.00 43.18 2.57
727 728 2.951726 CTCGTGAGCTGTCTGATCAAA 58.048 47.619 0.00 0.00 43.18 2.69
728 729 3.320626 CTCGTGAGCTGTCTGATCAAAA 58.679 45.455 0.00 0.00 43.18 2.44
729 730 3.930336 TCGTGAGCTGTCTGATCAAAAT 58.070 40.909 0.00 0.00 43.18 1.82
730 731 4.318332 TCGTGAGCTGTCTGATCAAAATT 58.682 39.130 0.00 0.00 43.18 1.82
747 748 3.627395 AATTAGATCTGACGGCCACAA 57.373 42.857 5.18 0.00 0.00 3.33
750 751 0.687354 AGATCTGACGGCCACAAAGT 59.313 50.000 2.24 0.00 0.00 2.66
764 765 1.416401 ACAAAGTGGGTCGAGACATGT 59.584 47.619 0.00 0.00 0.00 3.21
781 782 3.192633 ACATGTAGAAAAATCAACCGGCC 59.807 43.478 0.00 0.00 0.00 6.13
785 786 0.879090 GAAAAATCAACCGGCCGAGT 59.121 50.000 30.73 20.44 0.00 4.18
830 831 7.759489 ATAGAAATAGAAAGTTGTGTTGGCA 57.241 32.000 0.00 0.00 0.00 4.92
869 870 1.869767 CATCCAGCGTCTATTTCAGGC 59.130 52.381 0.00 0.00 0.00 4.85
887 888 0.723981 GCTTGTCGTTGATCAGCTCC 59.276 55.000 8.01 0.00 0.00 4.70
895 896 2.079925 GTTGATCAGCTCCTGAACACC 58.920 52.381 1.76 0.00 44.04 4.16
896 897 0.615331 TGATCAGCTCCTGAACACCC 59.385 55.000 0.00 0.00 44.04 4.61
897 898 0.460987 GATCAGCTCCTGAACACCCG 60.461 60.000 0.00 0.00 44.04 5.28
898 899 2.527951 ATCAGCTCCTGAACACCCGC 62.528 60.000 0.00 0.00 44.04 6.13
899 900 2.925170 AGCTCCTGAACACCCGCT 60.925 61.111 0.00 0.00 0.00 5.52
900 901 2.435059 GCTCCTGAACACCCGCTC 60.435 66.667 0.00 0.00 0.00 5.03
901 902 2.266055 CTCCTGAACACCCGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
902 903 3.316573 CTCCTGAACACCCGCTCCC 62.317 68.421 0.00 0.00 0.00 4.30
903 904 3.636231 CCTGAACACCCGCTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
904 905 2.671070 CTGAACACCCGCTCCCAT 59.329 61.111 0.00 0.00 0.00 4.00
905 906 1.450312 CTGAACACCCGCTCCCATC 60.450 63.158 0.00 0.00 0.00 3.51
906 907 2.511600 GAACACCCGCTCCCATCG 60.512 66.667 0.00 0.00 0.00 3.84
907 908 3.310860 GAACACCCGCTCCCATCGT 62.311 63.158 0.00 0.00 0.00 3.73
908 909 3.310860 AACACCCGCTCCCATCGTC 62.311 63.158 0.00 0.00 0.00 4.20
909 910 3.461773 CACCCGCTCCCATCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
910 911 2.125326 CACCCGCTCCCATCGTCTA 61.125 63.158 0.00 0.00 0.00 2.59
911 912 1.152525 ACCCGCTCCCATCGTCTAT 60.153 57.895 0.00 0.00 0.00 1.98
912 913 0.759436 ACCCGCTCCCATCGTCTATT 60.759 55.000 0.00 0.00 0.00 1.73
913 914 0.393077 CCCGCTCCCATCGTCTATTT 59.607 55.000 0.00 0.00 0.00 1.40
914 915 1.605712 CCCGCTCCCATCGTCTATTTC 60.606 57.143 0.00 0.00 0.00 2.17
915 916 1.068588 CCGCTCCCATCGTCTATTTCA 59.931 52.381 0.00 0.00 0.00 2.69
916 917 2.398498 CGCTCCCATCGTCTATTTCAG 58.602 52.381 0.00 0.00 0.00 3.02
917 918 2.760374 GCTCCCATCGTCTATTTCAGG 58.240 52.381 0.00 0.00 0.00 3.86
918 919 2.760374 CTCCCATCGTCTATTTCAGGC 58.240 52.381 0.00 0.00 0.00 4.85
919 920 2.103094 CTCCCATCGTCTATTTCAGGCA 59.897 50.000 0.00 0.00 0.00 4.75
920 921 2.103094 TCCCATCGTCTATTTCAGGCAG 59.897 50.000 0.00 0.00 0.00 4.85
1029 1040 0.109319 CCTTTTAAAGCGCATGCCGT 60.109 50.000 13.15 0.05 44.31 5.68
1059 1070 1.810606 CTCCTGCTCACCAGACACGT 61.811 60.000 0.00 0.00 44.64 4.49
1068 1079 0.685097 ACCAGACACGTACCTGCATT 59.315 50.000 10.00 0.00 0.00 3.56
1070 1081 1.732259 CCAGACACGTACCTGCATTTC 59.268 52.381 10.00 0.00 0.00 2.17
1109 1122 1.652124 CGACGTGCATAGTACAACCAC 59.348 52.381 0.00 0.00 0.00 4.16
1243 1259 0.532862 CCAGGACAAGACGTGCAAGT 60.533 55.000 4.50 4.50 38.70 3.16
1429 1445 3.430931 GTGCTCGAAGTCTGACATCTAC 58.569 50.000 10.88 0.91 0.00 2.59
1529 1553 0.455410 AGATGAGAGAGTGAGCGTGC 59.545 55.000 0.00 0.00 0.00 5.34
1538 1562 0.037697 AGTGAGCGTGCCACGATAAA 60.038 50.000 23.33 3.51 41.80 1.40
1539 1563 1.006832 GTGAGCGTGCCACGATAAAT 58.993 50.000 23.33 0.00 41.80 1.40
1549 1595 3.115554 GCCACGATAAATGATTTGCCAC 58.884 45.455 0.00 0.00 0.00 5.01
1574 1620 2.132762 CCCTGTTAATATCGTGGACGC 58.867 52.381 0.00 0.00 39.60 5.19
1627 1673 5.191722 TGATATGGCCTAGTTTTGGTCTTCT 59.808 40.000 3.32 0.00 0.00 2.85
1674 1720 0.323178 GGGAGGTACCGACTCACTGA 60.323 60.000 6.18 0.00 40.11 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.187700 GTCGACGATTGGCAGAATTACT 58.812 45.455 0.00 0.00 0.00 2.24
3 4 2.284417 GGTCGACGATTGGCAGAATTAC 59.716 50.000 9.92 0.00 0.00 1.89
4 5 2.093921 TGGTCGACGATTGGCAGAATTA 60.094 45.455 9.92 0.00 0.00 1.40
5 6 1.338674 TGGTCGACGATTGGCAGAATT 60.339 47.619 9.92 0.00 0.00 2.17
6 7 0.249120 TGGTCGACGATTGGCAGAAT 59.751 50.000 9.92 0.00 0.00 2.40
7 8 0.249120 ATGGTCGACGATTGGCAGAA 59.751 50.000 9.92 0.00 0.00 3.02
8 9 1.107945 TATGGTCGACGATTGGCAGA 58.892 50.000 18.49 0.00 0.00 4.26
9 10 1.860950 CTTATGGTCGACGATTGGCAG 59.139 52.381 18.49 6.40 0.00 4.85
10 11 1.472552 CCTTATGGTCGACGATTGGCA 60.473 52.381 18.49 5.37 0.00 4.92
11 12 1.217882 CCTTATGGTCGACGATTGGC 58.782 55.000 18.49 0.00 0.00 4.52
12 13 1.411246 TCCCTTATGGTCGACGATTGG 59.589 52.381 18.49 18.51 34.77 3.16
13 14 2.100916 ACTCCCTTATGGTCGACGATTG 59.899 50.000 18.49 11.40 34.77 2.67
14 15 2.385803 ACTCCCTTATGGTCGACGATT 58.614 47.619 18.49 3.63 34.77 3.34
15 16 2.068834 ACTCCCTTATGGTCGACGAT 57.931 50.000 17.44 17.44 34.77 3.73
16 17 2.684881 GTTACTCCCTTATGGTCGACGA 59.315 50.000 9.92 5.99 34.77 4.20
17 18 2.424601 TGTTACTCCCTTATGGTCGACG 59.575 50.000 9.92 0.00 34.77 5.12
18 19 3.446516 ACTGTTACTCCCTTATGGTCGAC 59.553 47.826 7.13 7.13 34.77 4.20
19 20 3.705051 ACTGTTACTCCCTTATGGTCGA 58.295 45.455 0.00 0.00 34.77 4.20
20 21 4.467198 AACTGTTACTCCCTTATGGTCG 57.533 45.455 0.00 0.00 34.77 4.79
21 22 9.543783 CTAATAAACTGTTACTCCCTTATGGTC 57.456 37.037 0.00 0.00 34.77 4.02
22 23 9.054580 ACTAATAAACTGTTACTCCCTTATGGT 57.945 33.333 0.00 0.00 34.77 3.55
27 28 8.756927 GGAGTACTAATAAACTGTTACTCCCTT 58.243 37.037 18.94 0.00 43.80 3.95
28 29 8.303780 GGAGTACTAATAAACTGTTACTCCCT 57.696 38.462 18.94 0.00 43.80 4.20
30 31 7.148000 ACGGGAGTACTAATAAACTGTTACTCC 60.148 40.741 20.47 20.47 46.91 3.85
31 32 7.766283 ACGGGAGTACTAATAAACTGTTACTC 58.234 38.462 0.00 8.24 44.60 2.59
32 33 7.709149 ACGGGAGTACTAATAAACTGTTACT 57.291 36.000 0.00 0.00 44.60 2.24
33 34 8.650714 CAAACGGGAGTACTAATAAACTGTTAC 58.349 37.037 0.00 0.00 46.69 2.50
34 35 8.584157 TCAAACGGGAGTACTAATAAACTGTTA 58.416 33.333 0.00 0.00 46.69 2.41
35 36 7.444299 TCAAACGGGAGTACTAATAAACTGTT 58.556 34.615 0.00 0.00 46.69 3.16
36 37 6.996509 TCAAACGGGAGTACTAATAAACTGT 58.003 36.000 0.00 0.00 46.69 3.55
37 38 7.412672 GCTTCAAACGGGAGTACTAATAAACTG 60.413 40.741 0.00 0.00 46.69 3.16
38 39 6.592994 GCTTCAAACGGGAGTACTAATAAACT 59.407 38.462 0.00 0.00 46.69 2.66
39 40 6.592994 AGCTTCAAACGGGAGTACTAATAAAC 59.407 38.462 0.00 0.00 46.69 2.01
40 41 6.704310 AGCTTCAAACGGGAGTACTAATAAA 58.296 36.000 0.00 0.00 46.69 1.40
41 42 6.290294 AGCTTCAAACGGGAGTACTAATAA 57.710 37.500 0.00 0.00 46.69 1.40
42 43 5.927281 AGCTTCAAACGGGAGTACTAATA 57.073 39.130 0.00 0.00 46.69 0.98
43 44 4.820894 AGCTTCAAACGGGAGTACTAAT 57.179 40.909 0.00 0.00 46.69 1.73
44 45 5.726980 TTAGCTTCAAACGGGAGTACTAA 57.273 39.130 0.00 0.00 46.69 2.24
45 46 5.927281 ATTAGCTTCAAACGGGAGTACTA 57.073 39.130 0.00 0.00 46.69 1.82
46 47 4.820894 ATTAGCTTCAAACGGGAGTACT 57.179 40.909 0.00 0.00 46.69 2.73
47 48 6.104665 AGTAATTAGCTTCAAACGGGAGTAC 58.895 40.000 0.00 0.00 46.69 2.73
48 49 6.290294 AGTAATTAGCTTCAAACGGGAGTA 57.710 37.500 0.00 0.00 46.69 2.59
50 51 4.571176 GGAGTAATTAGCTTCAAACGGGAG 59.429 45.833 0.00 0.00 0.00 4.30
51 52 4.020039 TGGAGTAATTAGCTTCAAACGGGA 60.020 41.667 0.00 0.00 0.00 5.14
52 53 4.258543 TGGAGTAATTAGCTTCAAACGGG 58.741 43.478 0.00 0.00 0.00 5.28
53 54 7.254795 CCTTATGGAGTAATTAGCTTCAAACGG 60.255 40.741 0.00 0.30 34.57 4.44
54 55 7.254795 CCCTTATGGAGTAATTAGCTTCAAACG 60.255 40.741 0.00 0.00 35.39 3.60
55 56 7.773690 TCCCTTATGGAGTAATTAGCTTCAAAC 59.226 37.037 0.00 0.00 38.61 2.93
56 57 7.867921 TCCCTTATGGAGTAATTAGCTTCAAA 58.132 34.615 0.00 0.00 38.61 2.69
57 58 7.446106 TCCCTTATGGAGTAATTAGCTTCAA 57.554 36.000 0.00 0.00 38.61 2.69
71 72 5.450818 AATTGCTGTTACTCCCTTATGGA 57.549 39.130 0.00 0.00 42.41 3.41
72 73 6.530019 AAAATTGCTGTTACTCCCTTATGG 57.470 37.500 0.00 0.00 0.00 2.74
76 77 9.309224 AGTAAATAAAATTGCTGTTACTCCCTT 57.691 29.630 0.00 0.00 28.16 3.95
77 78 8.879427 AGTAAATAAAATTGCTGTTACTCCCT 57.121 30.769 0.00 0.00 28.16 4.20
102 103 9.490379 GGCTCTTAGCTTAGCAACTTTAATATA 57.510 33.333 7.07 0.00 41.99 0.86
103 104 7.445707 GGGCTCTTAGCTTAGCAACTTTAATAT 59.554 37.037 7.07 0.00 41.99 1.28
104 105 6.766467 GGGCTCTTAGCTTAGCAACTTTAATA 59.234 38.462 7.07 0.00 41.99 0.98
105 106 5.590663 GGGCTCTTAGCTTAGCAACTTTAAT 59.409 40.000 7.07 0.00 41.99 1.40
106 107 4.941873 GGGCTCTTAGCTTAGCAACTTTAA 59.058 41.667 7.07 0.00 41.99 1.52
107 108 4.514401 GGGCTCTTAGCTTAGCAACTTTA 58.486 43.478 7.07 0.00 41.99 1.85
108 109 3.348119 GGGCTCTTAGCTTAGCAACTTT 58.652 45.455 7.07 0.00 41.99 2.66
109 110 2.356227 GGGGCTCTTAGCTTAGCAACTT 60.356 50.000 7.07 0.00 41.99 2.66
110 111 1.210722 GGGGCTCTTAGCTTAGCAACT 59.789 52.381 7.07 0.00 41.99 3.16
111 112 1.669604 GGGGCTCTTAGCTTAGCAAC 58.330 55.000 7.07 8.49 41.99 4.17
112 113 0.546598 GGGGGCTCTTAGCTTAGCAA 59.453 55.000 7.07 0.00 41.99 3.91
113 114 0.326618 AGGGGGCTCTTAGCTTAGCA 60.327 55.000 7.07 0.00 41.99 3.49
114 115 0.394938 GAGGGGGCTCTTAGCTTAGC 59.605 60.000 0.00 0.00 41.99 3.09
115 116 1.052617 GGAGGGGGCTCTTAGCTTAG 58.947 60.000 0.00 0.00 41.99 2.18
116 117 0.642710 AGGAGGGGGCTCTTAGCTTA 59.357 55.000 0.00 0.00 41.99 3.09
117 118 0.253394 AAGGAGGGGGCTCTTAGCTT 60.253 55.000 0.00 0.00 41.99 3.74
118 119 0.253394 AAAGGAGGGGGCTCTTAGCT 60.253 55.000 0.00 0.00 41.99 3.32
119 120 0.626382 AAAAGGAGGGGGCTCTTAGC 59.374 55.000 0.00 0.00 41.46 3.09
120 121 1.916181 TCAAAAGGAGGGGGCTCTTAG 59.084 52.381 0.00 0.00 0.00 2.18
121 122 2.053747 TCAAAAGGAGGGGGCTCTTA 57.946 50.000 0.00 0.00 0.00 2.10
122 123 1.158007 TTCAAAAGGAGGGGGCTCTT 58.842 50.000 0.00 0.00 0.00 2.85
123 124 1.387119 ATTCAAAAGGAGGGGGCTCT 58.613 50.000 0.00 0.00 0.00 4.09
124 125 2.238084 AATTCAAAAGGAGGGGGCTC 57.762 50.000 0.00 0.00 0.00 4.70
125 126 2.721585 AAATTCAAAAGGAGGGGGCT 57.278 45.000 0.00 0.00 0.00 5.19
126 127 3.788227 AAAAATTCAAAAGGAGGGGGC 57.212 42.857 0.00 0.00 0.00 5.80
144 145 6.962678 GTGTTAACTTCGTGAAGCACTAAAAA 59.037 34.615 9.46 0.00 41.99 1.94
145 146 6.314400 AGTGTTAACTTCGTGAAGCACTAAAA 59.686 34.615 14.78 3.50 41.99 1.52
146 147 5.813672 AGTGTTAACTTCGTGAAGCACTAAA 59.186 36.000 14.78 0.92 41.99 1.85
147 148 5.353938 AGTGTTAACTTCGTGAAGCACTAA 58.646 37.500 14.78 6.92 41.99 2.24
148 149 4.940463 AGTGTTAACTTCGTGAAGCACTA 58.060 39.130 14.78 2.25 41.99 2.74
149 150 3.793559 AGTGTTAACTTCGTGAAGCACT 58.206 40.909 9.46 11.03 41.99 4.40
150 151 3.554324 TGAGTGTTAACTTCGTGAAGCAC 59.446 43.478 9.46 9.15 41.99 4.40
151 152 3.554324 GTGAGTGTTAACTTCGTGAAGCA 59.446 43.478 9.46 0.00 41.99 3.91
152 153 3.554324 TGTGAGTGTTAACTTCGTGAAGC 59.446 43.478 9.46 0.00 41.99 3.86
153 154 4.317139 CGTGTGAGTGTTAACTTCGTGAAG 60.317 45.833 7.22 8.04 43.79 3.02
154 155 3.548668 CGTGTGAGTGTTAACTTCGTGAA 59.451 43.478 7.22 0.00 36.52 3.18
155 156 3.110358 CGTGTGAGTGTTAACTTCGTGA 58.890 45.455 7.22 0.00 36.52 4.35
156 157 2.347292 GCGTGTGAGTGTTAACTTCGTG 60.347 50.000 7.22 0.00 36.52 4.35
157 158 1.856597 GCGTGTGAGTGTTAACTTCGT 59.143 47.619 7.22 0.00 36.52 3.85
158 159 1.136992 CGCGTGTGAGTGTTAACTTCG 60.137 52.381 7.22 2.97 36.52 3.79
159 160 2.097541 GTCGCGTGTGAGTGTTAACTTC 60.098 50.000 5.77 5.55 36.52 3.01
160 161 1.856597 GTCGCGTGTGAGTGTTAACTT 59.143 47.619 5.77 0.00 36.52 2.66
161 162 1.202325 TGTCGCGTGTGAGTGTTAACT 60.202 47.619 5.77 0.00 40.21 2.24
162 163 1.202203 TGTCGCGTGTGAGTGTTAAC 58.798 50.000 5.77 0.00 0.00 2.01
163 164 1.589320 GTTGTCGCGTGTGAGTGTTAA 59.411 47.619 5.77 0.00 0.00 2.01
164 165 1.202203 GTTGTCGCGTGTGAGTGTTA 58.798 50.000 5.77 0.00 0.00 2.41
165 166 0.738063 TGTTGTCGCGTGTGAGTGTT 60.738 50.000 5.77 0.00 0.00 3.32
166 167 0.738063 TTGTTGTCGCGTGTGAGTGT 60.738 50.000 5.77 0.00 0.00 3.55
167 168 0.581529 ATTGTTGTCGCGTGTGAGTG 59.418 50.000 5.77 0.00 0.00 3.51
168 169 1.295792 AATTGTTGTCGCGTGTGAGT 58.704 45.000 5.77 0.00 0.00 3.41
169 170 3.215244 GTTAATTGTTGTCGCGTGTGAG 58.785 45.455 5.77 0.00 0.00 3.51
170 171 2.608090 TGTTAATTGTTGTCGCGTGTGA 59.392 40.909 5.77 0.00 0.00 3.58
171 172 2.964123 CTGTTAATTGTTGTCGCGTGTG 59.036 45.455 5.77 0.00 0.00 3.82
172 173 2.610374 ACTGTTAATTGTTGTCGCGTGT 59.390 40.909 5.77 0.00 0.00 4.49
173 174 3.247563 ACTGTTAATTGTTGTCGCGTG 57.752 42.857 5.77 0.00 0.00 5.34
174 175 3.303526 GGAACTGTTAATTGTTGTCGCGT 60.304 43.478 5.77 0.00 0.00 6.01
175 176 3.223157 GGAACTGTTAATTGTTGTCGCG 58.777 45.455 0.00 0.00 0.00 5.87
176 177 3.561503 GGGAACTGTTAATTGTTGTCGC 58.438 45.455 0.00 0.00 0.00 5.19
177 178 3.566322 TGGGGAACTGTTAATTGTTGTCG 59.434 43.478 0.00 0.00 0.00 4.35
178 179 5.523438 TTGGGGAACTGTTAATTGTTGTC 57.477 39.130 0.00 0.00 0.00 3.18
179 180 5.941555 TTTGGGGAACTGTTAATTGTTGT 57.058 34.783 0.00 0.00 0.00 3.32
180 181 7.497249 TCATTTTTGGGGAACTGTTAATTGTTG 59.503 33.333 0.00 0.00 0.00 3.33
181 182 7.569240 TCATTTTTGGGGAACTGTTAATTGTT 58.431 30.769 0.00 0.00 0.00 2.83
182 183 7.130681 TCATTTTTGGGGAACTGTTAATTGT 57.869 32.000 0.00 0.00 0.00 2.71
183 184 8.620116 ATTCATTTTTGGGGAACTGTTAATTG 57.380 30.769 0.00 0.00 0.00 2.32
184 185 9.942850 CTATTCATTTTTGGGGAACTGTTAATT 57.057 29.630 0.00 0.00 0.00 1.40
185 186 9.100197 ACTATTCATTTTTGGGGAACTGTTAAT 57.900 29.630 0.00 0.00 0.00 1.40
186 187 8.485578 ACTATTCATTTTTGGGGAACTGTTAA 57.514 30.769 0.00 0.00 0.00 2.01
187 188 9.016438 GTACTATTCATTTTTGGGGAACTGTTA 57.984 33.333 0.00 0.00 0.00 2.41
188 189 6.994421 ACTATTCATTTTTGGGGAACTGTT 57.006 33.333 0.00 0.00 0.00 3.16
189 190 7.238710 AGTACTATTCATTTTTGGGGAACTGT 58.761 34.615 0.00 0.00 0.00 3.55
190 191 7.703058 AGTACTATTCATTTTTGGGGAACTG 57.297 36.000 0.00 0.00 0.00 3.16
191 192 7.396339 GGAAGTACTATTCATTTTTGGGGAACT 59.604 37.037 0.00 0.00 0.00 3.01
192 193 7.396339 AGGAAGTACTATTCATTTTTGGGGAAC 59.604 37.037 0.00 0.00 0.00 3.62
193 194 7.475299 AGGAAGTACTATTCATTTTTGGGGAA 58.525 34.615 0.00 0.00 0.00 3.97
194 195 7.036863 AGAGGAAGTACTATTCATTTTTGGGGA 60.037 37.037 0.00 0.00 0.00 4.81
195 196 7.119387 AGAGGAAGTACTATTCATTTTTGGGG 58.881 38.462 0.00 0.00 0.00 4.96
196 197 8.581253 AAGAGGAAGTACTATTCATTTTTGGG 57.419 34.615 0.00 0.00 0.00 4.12
199 200 9.914131 GCAAAAGAGGAAGTACTATTCATTTTT 57.086 29.630 0.00 0.00 31.23 1.94
200 201 8.237267 CGCAAAAGAGGAAGTACTATTCATTTT 58.763 33.333 0.00 0.00 0.00 1.82
201 202 7.148239 CCGCAAAAGAGGAAGTACTATTCATTT 60.148 37.037 0.00 0.00 0.00 2.32
202 203 6.316390 CCGCAAAAGAGGAAGTACTATTCATT 59.684 38.462 0.00 0.00 0.00 2.57
203 204 5.817816 CCGCAAAAGAGGAAGTACTATTCAT 59.182 40.000 0.00 0.00 0.00 2.57
204 205 5.175859 CCGCAAAAGAGGAAGTACTATTCA 58.824 41.667 0.00 0.00 0.00 2.57
205 206 5.176592 ACCGCAAAAGAGGAAGTACTATTC 58.823 41.667 0.00 0.00 0.00 1.75
206 207 5.161943 ACCGCAAAAGAGGAAGTACTATT 57.838 39.130 0.00 0.00 0.00 1.73
207 208 4.820894 ACCGCAAAAGAGGAAGTACTAT 57.179 40.909 0.00 0.00 0.00 2.12
208 209 4.612264 AACCGCAAAAGAGGAAGTACTA 57.388 40.909 0.00 0.00 0.00 1.82
209 210 3.487120 AACCGCAAAAGAGGAAGTACT 57.513 42.857 0.00 0.00 0.00 2.73
210 211 5.874895 ATAAACCGCAAAAGAGGAAGTAC 57.125 39.130 0.00 0.00 0.00 2.73
211 212 6.110707 CCTATAAACCGCAAAAGAGGAAGTA 58.889 40.000 0.00 0.00 0.00 2.24
212 213 4.941873 CCTATAAACCGCAAAAGAGGAAGT 59.058 41.667 0.00 0.00 0.00 3.01
213 214 4.941873 ACCTATAAACCGCAAAAGAGGAAG 59.058 41.667 0.00 0.00 0.00 3.46
214 215 4.913784 ACCTATAAACCGCAAAAGAGGAA 58.086 39.130 0.00 0.00 0.00 3.36
215 216 4.224370 AGACCTATAAACCGCAAAAGAGGA 59.776 41.667 0.00 0.00 0.00 3.71
216 217 4.514401 AGACCTATAAACCGCAAAAGAGG 58.486 43.478 0.00 0.00 0.00 3.69
217 218 7.711339 AGATAAGACCTATAAACCGCAAAAGAG 59.289 37.037 0.00 0.00 0.00 2.85
218 219 7.562135 AGATAAGACCTATAAACCGCAAAAGA 58.438 34.615 0.00 0.00 0.00 2.52
219 220 7.494625 TGAGATAAGACCTATAAACCGCAAAAG 59.505 37.037 0.00 0.00 0.00 2.27
220 221 7.332557 TGAGATAAGACCTATAAACCGCAAAA 58.667 34.615 0.00 0.00 0.00 2.44
221 222 6.880484 TGAGATAAGACCTATAAACCGCAAA 58.120 36.000 0.00 0.00 0.00 3.68
222 223 6.474140 TGAGATAAGACCTATAAACCGCAA 57.526 37.500 0.00 0.00 0.00 4.85
223 224 6.474140 TTGAGATAAGACCTATAAACCGCA 57.526 37.500 0.00 0.00 0.00 5.69
224 225 7.781548 TTTTGAGATAAGACCTATAAACCGC 57.218 36.000 0.00 0.00 0.00 5.68
267 268 9.606631 GTAGAGAACCATCAAATTGAGACTTAT 57.393 33.333 1.10 0.00 0.00 1.73
269 270 7.913674 GTAGAGAACCATCAAATTGAGACTT 57.086 36.000 1.10 0.00 0.00 3.01
285 286 7.440523 AAAATCTGAACATGTGGTAGAGAAC 57.559 36.000 0.00 0.00 0.00 3.01
286 287 9.219603 CTTAAAATCTGAACATGTGGTAGAGAA 57.780 33.333 0.00 0.00 0.00 2.87
287 288 7.824289 CCTTAAAATCTGAACATGTGGTAGAGA 59.176 37.037 0.00 0.00 0.00 3.10
288 289 7.607991 ACCTTAAAATCTGAACATGTGGTAGAG 59.392 37.037 0.00 0.00 0.00 2.43
289 290 7.390440 CACCTTAAAATCTGAACATGTGGTAGA 59.610 37.037 0.00 4.21 0.00 2.59
290 291 7.530010 CACCTTAAAATCTGAACATGTGGTAG 58.470 38.462 0.00 0.00 0.00 3.18
291 292 6.072175 GCACCTTAAAATCTGAACATGTGGTA 60.072 38.462 0.00 0.00 0.00 3.25
292 293 5.278957 GCACCTTAAAATCTGAACATGTGGT 60.279 40.000 0.00 0.00 0.00 4.16
293 294 5.163513 GCACCTTAAAATCTGAACATGTGG 58.836 41.667 0.00 0.00 0.00 4.17
294 295 5.771469 TGCACCTTAAAATCTGAACATGTG 58.229 37.500 0.00 0.00 0.00 3.21
295 296 6.594788 ATGCACCTTAAAATCTGAACATGT 57.405 33.333 0.00 0.00 0.00 3.21
296 297 8.984891 TTAATGCACCTTAAAATCTGAACATG 57.015 30.769 0.00 0.00 0.00 3.21
298 299 9.638239 GATTTAATGCACCTTAAAATCTGAACA 57.362 29.630 8.82 0.00 35.02 3.18
299 300 9.638239 TGATTTAATGCACCTTAAAATCTGAAC 57.362 29.630 8.82 0.00 35.02 3.18
303 304 9.101655 GCAATGATTTAATGCACCTTAAAATCT 57.898 29.630 8.82 0.00 39.81 2.40
304 305 8.881743 TGCAATGATTTAATGCACCTTAAAATC 58.118 29.630 8.82 10.22 44.52 2.17
305 306 8.789825 TGCAATGATTTAATGCACCTTAAAAT 57.210 26.923 8.82 2.32 44.52 1.82
345 346 9.737844 ATAAAGTCCATGCATTGGTTAATTTTT 57.262 25.926 0.00 2.79 46.52 1.94
346 347 9.165035 CATAAAGTCCATGCATTGGTTAATTTT 57.835 29.630 0.00 0.00 46.52 1.82
347 348 7.280652 GCATAAAGTCCATGCATTGGTTAATTT 59.719 33.333 0.00 2.64 46.47 1.82
348 349 6.762661 GCATAAAGTCCATGCATTGGTTAATT 59.237 34.615 0.00 1.18 46.47 1.40
349 350 6.282930 GCATAAAGTCCATGCATTGGTTAAT 58.717 36.000 0.00 0.00 46.47 1.40
350 351 5.659463 GCATAAAGTCCATGCATTGGTTAA 58.341 37.500 0.00 0.00 46.47 2.01
351 352 5.261209 GCATAAAGTCCATGCATTGGTTA 57.739 39.130 0.00 0.00 46.47 2.85
352 353 4.127566 GCATAAAGTCCATGCATTGGTT 57.872 40.909 0.00 0.00 46.47 3.67
353 354 3.806625 GCATAAAGTCCATGCATTGGT 57.193 42.857 0.00 0.00 46.47 3.67
413 414 9.737427 TCAATTAATGCACTCGTTTTTCTTAAA 57.263 25.926 0.00 0.00 0.00 1.52
414 415 9.393249 CTCAATTAATGCACTCGTTTTTCTTAA 57.607 29.630 0.00 0.00 0.00 1.85
415 416 8.564574 ACTCAATTAATGCACTCGTTTTTCTTA 58.435 29.630 0.00 0.00 0.00 2.10
416 417 7.379529 CACTCAATTAATGCACTCGTTTTTCTT 59.620 33.333 0.00 0.00 0.00 2.52
417 418 6.857964 CACTCAATTAATGCACTCGTTTTTCT 59.142 34.615 0.00 0.00 0.00 2.52
418 419 6.636850 ACACTCAATTAATGCACTCGTTTTTC 59.363 34.615 0.00 0.00 0.00 2.29
419 420 6.503524 ACACTCAATTAATGCACTCGTTTTT 58.496 32.000 0.00 0.00 0.00 1.94
420 421 6.072112 ACACTCAATTAATGCACTCGTTTT 57.928 33.333 0.00 0.00 0.00 2.43
421 422 5.689383 ACACTCAATTAATGCACTCGTTT 57.311 34.783 0.00 0.00 0.00 3.60
422 423 5.689383 AACACTCAATTAATGCACTCGTT 57.311 34.783 0.00 0.00 0.00 3.85
423 424 5.689383 AAACACTCAATTAATGCACTCGT 57.311 34.783 0.00 0.00 0.00 4.18
424 425 6.614162 GCAAAAACACTCAATTAATGCACTCG 60.614 38.462 0.00 0.00 0.00 4.18
425 426 6.200665 TGCAAAAACACTCAATTAATGCACTC 59.799 34.615 0.00 0.00 36.46 3.51
426 427 6.047870 TGCAAAAACACTCAATTAATGCACT 58.952 32.000 0.00 0.00 36.46 4.40
427 428 6.284475 TGCAAAAACACTCAATTAATGCAC 57.716 33.333 0.00 0.00 36.46 4.57
428 429 6.915544 TTGCAAAAACACTCAATTAATGCA 57.084 29.167 0.00 0.00 39.28 3.96
429 430 7.408910 AGTTTGCAAAAACACTCAATTAATGC 58.591 30.769 14.67 0.00 35.20 3.56
457 458 6.725834 AGATGGTGAGTGGTGGAATAATTTTT 59.274 34.615 0.00 0.00 0.00 1.94
458 459 6.256053 AGATGGTGAGTGGTGGAATAATTTT 58.744 36.000 0.00 0.00 0.00 1.82
459 460 5.831103 AGATGGTGAGTGGTGGAATAATTT 58.169 37.500 0.00 0.00 0.00 1.82
460 461 5.456921 AGATGGTGAGTGGTGGAATAATT 57.543 39.130 0.00 0.00 0.00 1.40
461 462 5.163195 GGTAGATGGTGAGTGGTGGAATAAT 60.163 44.000 0.00 0.00 0.00 1.28
462 463 4.163458 GGTAGATGGTGAGTGGTGGAATAA 59.837 45.833 0.00 0.00 0.00 1.40
463 464 3.709653 GGTAGATGGTGAGTGGTGGAATA 59.290 47.826 0.00 0.00 0.00 1.75
464 465 2.505819 GGTAGATGGTGAGTGGTGGAAT 59.494 50.000 0.00 0.00 0.00 3.01
465 466 1.906574 GGTAGATGGTGAGTGGTGGAA 59.093 52.381 0.00 0.00 0.00 3.53
466 467 1.078823 AGGTAGATGGTGAGTGGTGGA 59.921 52.381 0.00 0.00 0.00 4.02
467 468 1.573108 AGGTAGATGGTGAGTGGTGG 58.427 55.000 0.00 0.00 0.00 4.61
468 469 2.567169 TCAAGGTAGATGGTGAGTGGTG 59.433 50.000 0.00 0.00 0.00 4.17
469 470 2.902608 TCAAGGTAGATGGTGAGTGGT 58.097 47.619 0.00 0.00 0.00 4.16
470 471 4.080919 TCAATCAAGGTAGATGGTGAGTGG 60.081 45.833 0.00 0.00 36.87 4.00
471 472 5.089970 TCAATCAAGGTAGATGGTGAGTG 57.910 43.478 0.00 0.00 37.41 3.51
472 473 5.426509 TCATCAATCAAGGTAGATGGTGAGT 59.573 40.000 0.00 0.00 38.64 3.41
473 474 5.922053 TCATCAATCAAGGTAGATGGTGAG 58.078 41.667 0.00 0.00 38.64 3.51
474 475 5.662657 TCTCATCAATCAAGGTAGATGGTGA 59.337 40.000 0.00 0.00 38.64 4.02
475 476 5.922053 TCTCATCAATCAAGGTAGATGGTG 58.078 41.667 0.00 0.00 38.64 4.17
476 477 6.760440 ATCTCATCAATCAAGGTAGATGGT 57.240 37.500 0.00 0.00 38.64 3.55
477 478 8.461249 AAAATCTCATCAATCAAGGTAGATGG 57.539 34.615 0.00 0.00 38.64 3.51
478 479 9.731819 CAAAAATCTCATCAATCAAGGTAGATG 57.268 33.333 0.00 0.00 39.29 2.90
479 480 9.690913 TCAAAAATCTCATCAATCAAGGTAGAT 57.309 29.630 0.00 0.00 0.00 1.98
480 481 9.519191 TTCAAAAATCTCATCAATCAAGGTAGA 57.481 29.630 0.00 0.00 0.00 2.59
483 484 9.431887 CAATTCAAAAATCTCATCAATCAAGGT 57.568 29.630 0.00 0.00 0.00 3.50
484 485 9.647797 TCAATTCAAAAATCTCATCAATCAAGG 57.352 29.630 0.00 0.00 0.00 3.61
486 487 9.146984 GCTCAATTCAAAAATCTCATCAATCAA 57.853 29.630 0.00 0.00 0.00 2.57
487 488 7.762615 GGCTCAATTCAAAAATCTCATCAATCA 59.237 33.333 0.00 0.00 0.00 2.57
488 489 7.224167 GGGCTCAATTCAAAAATCTCATCAATC 59.776 37.037 0.00 0.00 0.00 2.67
489 490 7.046033 GGGCTCAATTCAAAAATCTCATCAAT 58.954 34.615 0.00 0.00 0.00 2.57
490 491 6.211986 AGGGCTCAATTCAAAAATCTCATCAA 59.788 34.615 0.00 0.00 0.00 2.57
491 492 5.718130 AGGGCTCAATTCAAAAATCTCATCA 59.282 36.000 0.00 0.00 0.00 3.07
492 493 6.218108 AGGGCTCAATTCAAAAATCTCATC 57.782 37.500 0.00 0.00 0.00 2.92
493 494 7.909485 ATAGGGCTCAATTCAAAAATCTCAT 57.091 32.000 0.00 0.00 0.00 2.90
494 495 8.821686 TTATAGGGCTCAATTCAAAAATCTCA 57.178 30.769 0.00 0.00 0.00 3.27
495 496 9.521503 GTTTATAGGGCTCAATTCAAAAATCTC 57.478 33.333 0.00 0.00 0.00 2.75
496 497 8.478066 GGTTTATAGGGCTCAATTCAAAAATCT 58.522 33.333 0.00 0.00 0.00 2.40
497 498 7.435192 CGGTTTATAGGGCTCAATTCAAAAATC 59.565 37.037 0.00 0.00 0.00 2.17
498 499 7.093509 ACGGTTTATAGGGCTCAATTCAAAAAT 60.094 33.333 0.00 0.00 0.00 1.82
499 500 6.209788 ACGGTTTATAGGGCTCAATTCAAAAA 59.790 34.615 0.00 0.00 0.00 1.94
500 501 5.712917 ACGGTTTATAGGGCTCAATTCAAAA 59.287 36.000 0.00 0.00 0.00 2.44
501 502 5.258051 ACGGTTTATAGGGCTCAATTCAAA 58.742 37.500 0.00 0.00 0.00 2.69
502 503 4.850680 ACGGTTTATAGGGCTCAATTCAA 58.149 39.130 0.00 0.00 0.00 2.69
503 504 4.497291 ACGGTTTATAGGGCTCAATTCA 57.503 40.909 0.00 0.00 0.00 2.57
504 505 6.017357 CCTTTACGGTTTATAGGGCTCAATTC 60.017 42.308 0.00 0.00 0.00 2.17
505 506 5.826208 CCTTTACGGTTTATAGGGCTCAATT 59.174 40.000 0.00 0.00 0.00 2.32
506 507 5.131475 TCCTTTACGGTTTATAGGGCTCAAT 59.869 40.000 0.00 0.00 0.00 2.57
507 508 4.470664 TCCTTTACGGTTTATAGGGCTCAA 59.529 41.667 0.00 0.00 0.00 3.02
508 509 4.032310 TCCTTTACGGTTTATAGGGCTCA 58.968 43.478 0.00 0.00 0.00 4.26
509 510 4.502777 CCTCCTTTACGGTTTATAGGGCTC 60.503 50.000 0.00 0.00 0.00 4.70
510 511 3.390311 CCTCCTTTACGGTTTATAGGGCT 59.610 47.826 0.00 0.00 0.00 5.19
511 512 3.135348 ACCTCCTTTACGGTTTATAGGGC 59.865 47.826 0.00 0.00 0.00 5.19
512 513 5.600069 ACTACCTCCTTTACGGTTTATAGGG 59.400 44.000 0.00 0.00 34.76 3.53
513 514 6.721704 ACTACCTCCTTTACGGTTTATAGG 57.278 41.667 0.00 0.00 34.76 2.57
514 515 7.652727 GGTACTACCTCCTTTACGGTTTATAG 58.347 42.308 0.00 0.00 34.73 1.31
515 516 7.582667 GGTACTACCTCCTTTACGGTTTATA 57.417 40.000 0.00 0.00 34.73 0.98
516 517 6.471233 GGTACTACCTCCTTTACGGTTTAT 57.529 41.667 0.00 0.00 34.73 1.40
517 518 5.914898 GGTACTACCTCCTTTACGGTTTA 57.085 43.478 0.00 0.00 34.73 2.01
518 519 4.808414 GGTACTACCTCCTTTACGGTTT 57.192 45.455 0.00 0.00 34.73 3.27
531 532 1.413077 GGCAGATGTGGAGGTACTACC 59.587 57.143 0.00 0.00 39.75 3.18
532 533 2.362717 GAGGCAGATGTGGAGGTACTAC 59.637 54.545 0.00 0.00 41.55 2.73
533 534 2.245028 AGAGGCAGATGTGGAGGTACTA 59.755 50.000 0.00 0.00 41.55 1.82
535 536 1.490574 AGAGGCAGATGTGGAGGTAC 58.509 55.000 0.00 0.00 0.00 3.34
536 537 2.667470 GTAGAGGCAGATGTGGAGGTA 58.333 52.381 0.00 0.00 0.00 3.08
537 538 1.490574 GTAGAGGCAGATGTGGAGGT 58.509 55.000 0.00 0.00 0.00 3.85
538 539 0.755686 GGTAGAGGCAGATGTGGAGG 59.244 60.000 0.00 0.00 0.00 4.30
539 540 0.755686 GGGTAGAGGCAGATGTGGAG 59.244 60.000 0.00 0.00 0.00 3.86
540 541 1.043116 CGGGTAGAGGCAGATGTGGA 61.043 60.000 0.00 0.00 0.00 4.02
541 542 1.443407 CGGGTAGAGGCAGATGTGG 59.557 63.158 0.00 0.00 0.00 4.17
542 543 1.227380 GCGGGTAGAGGCAGATGTG 60.227 63.158 0.00 0.00 0.00 3.21
543 544 2.435693 GGCGGGTAGAGGCAGATGT 61.436 63.158 0.00 0.00 0.00 3.06
544 545 2.423446 GGCGGGTAGAGGCAGATG 59.577 66.667 0.00 0.00 0.00 2.90
545 546 3.227276 CGGCGGGTAGAGGCAGAT 61.227 66.667 0.00 0.00 0.00 2.90
551 552 4.430765 ACAACGCGGCGGGTAGAG 62.431 66.667 29.80 22.79 0.00 2.43
552 553 4.728102 CACAACGCGGCGGGTAGA 62.728 66.667 29.80 0.00 0.00 2.59
578 579 1.643868 TAAATCCAGCAGTTGCCGCG 61.644 55.000 0.00 0.00 43.38 6.46
579 580 0.099436 CTAAATCCAGCAGTTGCCGC 59.901 55.000 0.00 0.00 43.38 6.53
580 581 0.099436 GCTAAATCCAGCAGTTGCCG 59.901 55.000 0.00 0.00 43.38 5.69
581 582 0.457443 GGCTAAATCCAGCAGTTGCC 59.543 55.000 0.00 0.00 43.67 4.52
582 583 0.099436 CGGCTAAATCCAGCAGTTGC 59.901 55.000 0.00 0.00 43.67 4.17
583 584 0.099436 GCGGCTAAATCCAGCAGTTG 59.901 55.000 0.00 0.00 43.67 3.16
584 585 1.032114 GGCGGCTAAATCCAGCAGTT 61.032 55.000 0.00 0.00 43.67 3.16
585 586 1.452108 GGCGGCTAAATCCAGCAGT 60.452 57.895 0.00 0.00 43.67 4.40
586 587 2.537560 CGGCGGCTAAATCCAGCAG 61.538 63.158 7.61 0.00 43.67 4.24
587 588 2.513666 CGGCGGCTAAATCCAGCA 60.514 61.111 7.61 0.00 43.67 4.41
588 589 2.513897 ACGGCGGCTAAATCCAGC 60.514 61.111 13.24 0.00 41.02 4.85
589 590 1.153449 TGACGGCGGCTAAATCCAG 60.153 57.895 16.45 0.00 0.00 3.86
590 591 1.448893 GTGACGGCGGCTAAATCCA 60.449 57.895 16.45 0.00 0.00 3.41
591 592 1.152383 GAGTGACGGCGGCTAAATCC 61.152 60.000 16.45 0.00 0.00 3.01
592 593 0.179108 AGAGTGACGGCGGCTAAATC 60.179 55.000 16.45 2.71 0.00 2.17
593 594 0.179108 GAGAGTGACGGCGGCTAAAT 60.179 55.000 16.45 0.00 0.00 1.40
594 595 1.214589 GAGAGTGACGGCGGCTAAA 59.785 57.895 16.45 0.00 0.00 1.85
595 596 2.707849 GGAGAGTGACGGCGGCTAA 61.708 63.158 16.45 0.00 0.00 3.09
596 597 3.138798 GGAGAGTGACGGCGGCTA 61.139 66.667 16.45 0.00 0.00 3.93
599 600 3.382832 AAGGGAGAGTGACGGCGG 61.383 66.667 13.24 0.00 0.00 6.13
600 601 2.125912 CAAGGGAGAGTGACGGCG 60.126 66.667 4.80 4.80 0.00 6.46
601 602 1.374758 CACAAGGGAGAGTGACGGC 60.375 63.158 0.00 0.00 37.97 5.68
602 603 1.374758 GCACAAGGGAGAGTGACGG 60.375 63.158 0.00 0.00 37.97 4.79
603 604 1.734477 CGCACAAGGGAGAGTGACG 60.734 63.158 0.00 0.00 37.97 4.35
604 605 0.946221 CACGCACAAGGGAGAGTGAC 60.946 60.000 0.00 0.00 37.54 3.67
605 606 1.367471 CACGCACAAGGGAGAGTGA 59.633 57.895 0.00 0.00 37.54 3.41
606 607 1.669115 CCACGCACAAGGGAGAGTG 60.669 63.158 0.00 0.00 35.74 3.51
607 608 2.743718 CCACGCACAAGGGAGAGT 59.256 61.111 0.00 0.00 0.00 3.24
608 609 2.743928 GCCACGCACAAGGGAGAG 60.744 66.667 0.00 0.00 0.00 3.20
609 610 4.329545 GGCCACGCACAAGGGAGA 62.330 66.667 0.00 0.00 0.00 3.71
614 615 4.988598 AGACCGGCCACGCACAAG 62.989 66.667 0.00 0.00 39.22 3.16
621 622 2.485795 TTTGTTGCAGACCGGCCAC 61.486 57.895 0.00 0.00 0.00 5.01
622 623 2.124109 TTTGTTGCAGACCGGCCA 60.124 55.556 0.00 0.00 0.00 5.36
623 624 2.335011 GTTTGTTGCAGACCGGCC 59.665 61.111 0.00 0.00 0.00 6.13
624 625 2.335011 GGTTTGTTGCAGACCGGC 59.665 61.111 0.00 0.00 29.22 6.13
625 626 1.106944 AAGGGTTTGTTGCAGACCGG 61.107 55.000 0.00 0.00 39.21 5.28
626 627 0.744281 AAAGGGTTTGTTGCAGACCG 59.256 50.000 3.30 0.00 39.21 4.79
627 628 2.223537 CAAAGGGTTTGTTGCAGACC 57.776 50.000 0.75 0.75 37.82 3.85
636 637 0.875474 CGGCTGCAACAAAGGGTTTG 60.875 55.000 0.50 0.00 45.95 2.93
637 638 1.040339 TCGGCTGCAACAAAGGGTTT 61.040 50.000 0.50 0.00 37.72 3.27
638 639 1.454847 TCGGCTGCAACAAAGGGTT 60.455 52.632 0.50 0.00 41.47 4.11
639 640 1.898574 CTCGGCTGCAACAAAGGGT 60.899 57.895 0.50 0.00 0.00 4.34
640 641 2.956987 CTCGGCTGCAACAAAGGG 59.043 61.111 0.50 0.00 0.00 3.95
641 642 2.256461 GCTCGGCTGCAACAAAGG 59.744 61.111 0.50 0.00 0.00 3.11
642 643 2.256461 GGCTCGGCTGCAACAAAG 59.744 61.111 0.50 0.00 34.04 2.77
643 644 2.518112 TGGCTCGGCTGCAACAAA 60.518 55.556 0.50 0.00 34.04 2.83
644 645 2.979676 CTGGCTCGGCTGCAACAA 60.980 61.111 0.50 0.00 34.04 2.83
652 653 0.659957 CTTATTTCAGCTGGCTCGGC 59.340 55.000 15.13 0.00 35.73 5.54
653 654 1.134401 TCCTTATTTCAGCTGGCTCGG 60.134 52.381 15.13 7.54 0.00 4.63
654 655 1.936547 GTCCTTATTTCAGCTGGCTCG 59.063 52.381 15.13 0.00 0.00 5.03
655 656 2.293170 GGTCCTTATTTCAGCTGGCTC 58.707 52.381 15.13 0.00 0.00 4.70
656 657 1.635487 TGGTCCTTATTTCAGCTGGCT 59.365 47.619 15.13 1.19 0.00 4.75
657 658 2.128771 TGGTCCTTATTTCAGCTGGC 57.871 50.000 15.13 0.00 0.00 4.85
658 659 5.185635 TCAATTTGGTCCTTATTTCAGCTGG 59.814 40.000 15.13 0.00 0.00 4.85
659 660 6.271488 TCAATTTGGTCCTTATTTCAGCTG 57.729 37.500 7.63 7.63 0.00 4.24
660 661 6.916360 TTCAATTTGGTCCTTATTTCAGCT 57.084 33.333 0.00 0.00 0.00 4.24
661 662 7.961325 TTTTCAATTTGGTCCTTATTTCAGC 57.039 32.000 0.00 0.00 0.00 4.26
683 684 5.241728 GCAATCTCTACCCAGTTCAGTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
684 685 4.762251 GCAATCTCTACCCAGTTCAGTTTT 59.238 41.667 0.00 0.00 0.00 2.43
685 686 4.042187 AGCAATCTCTACCCAGTTCAGTTT 59.958 41.667 0.00 0.00 0.00 2.66
686 687 3.584848 AGCAATCTCTACCCAGTTCAGTT 59.415 43.478 0.00 0.00 0.00 3.16
687 688 3.177228 AGCAATCTCTACCCAGTTCAGT 58.823 45.455 0.00 0.00 0.00 3.41
688 689 3.736433 CGAGCAATCTCTACCCAGTTCAG 60.736 52.174 0.00 0.00 37.19 3.02
689 690 2.166459 CGAGCAATCTCTACCCAGTTCA 59.834 50.000 0.00 0.00 37.19 3.18
690 691 2.166664 ACGAGCAATCTCTACCCAGTTC 59.833 50.000 0.00 0.00 37.19 3.01
691 692 2.093973 CACGAGCAATCTCTACCCAGTT 60.094 50.000 0.00 0.00 37.19 3.16
692 693 1.478510 CACGAGCAATCTCTACCCAGT 59.521 52.381 0.00 0.00 37.19 4.00
693 694 1.751351 TCACGAGCAATCTCTACCCAG 59.249 52.381 0.00 0.00 37.19 4.45
694 695 1.751351 CTCACGAGCAATCTCTACCCA 59.249 52.381 0.00 0.00 37.19 4.51
695 696 2.500509 CTCACGAGCAATCTCTACCC 57.499 55.000 0.00 0.00 37.19 3.69
707 708 2.643933 TTGATCAGACAGCTCACGAG 57.356 50.000 0.00 0.00 0.00 4.18
708 709 3.385193 TTTTGATCAGACAGCTCACGA 57.615 42.857 0.00 0.00 0.00 4.35
709 710 4.675190 AATTTTGATCAGACAGCTCACG 57.325 40.909 0.00 0.00 0.00 4.35
710 711 6.974932 TCTAATTTTGATCAGACAGCTCAC 57.025 37.500 0.00 0.00 0.00 3.51
711 712 7.494952 CAGATCTAATTTTGATCAGACAGCTCA 59.505 37.037 18.68 0.00 41.85 4.26
712 713 7.710044 TCAGATCTAATTTTGATCAGACAGCTC 59.290 37.037 18.68 0.00 41.85 4.09
713 714 7.495279 GTCAGATCTAATTTTGATCAGACAGCT 59.505 37.037 26.11 6.26 46.88 4.24
714 715 7.629130 GTCAGATCTAATTTTGATCAGACAGC 58.371 38.462 26.11 11.15 46.88 4.40
717 718 6.292596 GCCGTCAGATCTAATTTTGATCAGAC 60.293 42.308 23.57 23.57 45.57 3.51
718 719 5.755375 GCCGTCAGATCTAATTTTGATCAGA 59.245 40.000 18.68 14.54 41.85 3.27
719 720 5.049818 GGCCGTCAGATCTAATTTTGATCAG 60.050 44.000 18.68 12.87 41.85 2.90
720 721 4.816385 GGCCGTCAGATCTAATTTTGATCA 59.184 41.667 18.68 0.00 41.85 2.92
721 722 4.816385 TGGCCGTCAGATCTAATTTTGATC 59.184 41.667 11.43 11.43 40.26 2.92
722 723 4.576463 GTGGCCGTCAGATCTAATTTTGAT 59.424 41.667 0.00 0.00 0.00 2.57
723 724 3.938963 GTGGCCGTCAGATCTAATTTTGA 59.061 43.478 0.00 0.00 0.00 2.69
724 725 3.689161 TGTGGCCGTCAGATCTAATTTTG 59.311 43.478 0.00 0.00 0.00 2.44
725 726 3.950397 TGTGGCCGTCAGATCTAATTTT 58.050 40.909 0.00 0.00 0.00 1.82
726 727 3.627395 TGTGGCCGTCAGATCTAATTT 57.373 42.857 0.00 0.00 0.00 1.82
727 728 3.627395 TTGTGGCCGTCAGATCTAATT 57.373 42.857 0.00 0.00 0.00 1.40
728 729 3.055094 ACTTTGTGGCCGTCAGATCTAAT 60.055 43.478 0.00 0.00 0.00 1.73
729 730 2.301870 ACTTTGTGGCCGTCAGATCTAA 59.698 45.455 0.00 0.00 0.00 2.10
730 731 1.899814 ACTTTGTGGCCGTCAGATCTA 59.100 47.619 0.00 0.00 0.00 1.98
747 748 2.803956 TCTACATGTCTCGACCCACTT 58.196 47.619 0.00 0.00 0.00 3.16
750 751 4.610605 TTTTTCTACATGTCTCGACCCA 57.389 40.909 0.00 0.00 0.00 4.51
764 765 2.289819 ACTCGGCCGGTTGATTTTTCTA 60.290 45.455 27.83 0.00 0.00 2.10
781 782 6.034591 ACAATAACGGAAAGACTATGACTCG 58.965 40.000 0.00 0.00 0.00 4.18
830 831 1.482182 TGTGTCTTCGCATGCTAGGAT 59.518 47.619 17.13 0.00 0.00 3.24
869 870 1.998315 CAGGAGCTGATCAACGACAAG 59.002 52.381 0.00 0.00 32.44 3.16
887 888 1.450312 GATGGGAGCGGGTGTTCAG 60.450 63.158 0.00 0.00 0.00 3.02
895 896 1.068588 TGAAATAGACGATGGGAGCGG 59.931 52.381 0.00 0.00 0.00 5.52
896 897 2.398498 CTGAAATAGACGATGGGAGCG 58.602 52.381 0.00 0.00 0.00 5.03
897 898 2.760374 CCTGAAATAGACGATGGGAGC 58.240 52.381 0.00 0.00 0.00 4.70
898 899 2.103094 TGCCTGAAATAGACGATGGGAG 59.897 50.000 0.00 0.00 0.00 4.30
899 900 2.103094 CTGCCTGAAATAGACGATGGGA 59.897 50.000 0.00 0.00 0.00 4.37
900 901 2.487934 CTGCCTGAAATAGACGATGGG 58.512 52.381 0.00 0.00 0.00 4.00
901 902 1.869767 GCTGCCTGAAATAGACGATGG 59.130 52.381 0.00 0.00 0.00 3.51
902 903 1.524355 CGCTGCCTGAAATAGACGATG 59.476 52.381 0.00 0.00 0.00 3.84
903 904 1.137086 ACGCTGCCTGAAATAGACGAT 59.863 47.619 0.00 0.00 0.00 3.73
904 905 0.530744 ACGCTGCCTGAAATAGACGA 59.469 50.000 0.00 0.00 0.00 4.20
905 906 2.203800 TACGCTGCCTGAAATAGACG 57.796 50.000 0.00 0.00 0.00 4.18
906 907 2.608090 GGTTACGCTGCCTGAAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
907 908 2.737359 CGGTTACGCTGCCTGAAATAGA 60.737 50.000 0.00 0.00 0.00 1.98
908 909 1.593006 CGGTTACGCTGCCTGAAATAG 59.407 52.381 0.00 0.00 0.00 1.73
909 910 1.066716 ACGGTTACGCTGCCTGAAATA 60.067 47.619 0.00 0.00 46.04 1.40
910 911 0.321298 ACGGTTACGCTGCCTGAAAT 60.321 50.000 0.00 0.00 46.04 2.17
911 912 1.070105 ACGGTTACGCTGCCTGAAA 59.930 52.632 0.00 0.00 46.04 2.69
912 913 1.666553 CACGGTTACGCTGCCTGAA 60.667 57.895 0.00 0.00 46.04 3.02
913 914 2.048597 CACGGTTACGCTGCCTGA 60.049 61.111 0.00 0.00 46.04 3.86
914 915 3.118454 CCACGGTTACGCTGCCTG 61.118 66.667 0.00 0.00 46.04 4.85
915 916 4.388499 CCCACGGTTACGCTGCCT 62.388 66.667 0.00 0.00 46.04 4.75
917 918 4.382320 TCCCCACGGTTACGCTGC 62.382 66.667 0.00 0.00 46.04 5.25
918 919 2.433664 GTCCCCACGGTTACGCTG 60.434 66.667 0.00 0.00 46.04 5.18
919 920 4.060038 CGTCCCCACGGTTACGCT 62.060 66.667 0.00 0.00 46.04 5.07
1059 1070 1.748879 GGCGGCAGAAATGCAGGTA 60.749 57.895 3.07 0.00 36.33 3.08
1068 1079 4.329545 GGTGTGGAGGCGGCAGAA 62.330 66.667 13.08 0.00 0.00 3.02
1091 1104 1.345089 TGGTGGTTGTACTATGCACGT 59.655 47.619 0.00 0.00 0.00 4.49
1261 1277 0.612174 CCCTCCTCCGTGTTCTCAGA 60.612 60.000 0.00 0.00 0.00 3.27
1263 1279 1.609501 CCCCTCCTCCGTGTTCTCA 60.610 63.158 0.00 0.00 0.00 3.27
1429 1445 1.229428 AGAAGACACAACCATGCACG 58.771 50.000 0.00 0.00 0.00 5.34
1529 1553 4.637483 AGTGGCAAATCATTTATCGTGG 57.363 40.909 0.00 0.00 0.00 4.94
1538 1562 2.173519 CAGGGACAAGTGGCAAATCAT 58.826 47.619 0.00 0.00 0.00 2.45
1539 1563 1.133513 ACAGGGACAAGTGGCAAATCA 60.134 47.619 0.00 0.00 0.00 2.57
1549 1595 4.809426 GTCCACGATATTAACAGGGACAAG 59.191 45.833 0.00 0.00 42.17 3.16
1603 1649 5.191722 AGAAGACCAAAACTAGGCCATATCA 59.808 40.000 5.01 0.00 0.00 2.15
1607 1653 4.388577 AAGAAGACCAAAACTAGGCCAT 57.611 40.909 5.01 0.00 0.00 4.40
1627 1673 5.312079 CAAAAATCCCAAGGCCAACAATAA 58.688 37.500 5.01 0.00 0.00 1.40
1674 1720 2.514458 AATGAAGGACCAAGGCGAAT 57.486 45.000 0.00 0.00 0.00 3.34
2237 2291 9.614465 CGTTTCACGTATACAAAATATGTACAG 57.386 33.333 0.33 0.00 40.96 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.