>input_sequence_76153
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--------------------------------------------------CCCATCGCCGCCTTTTAAAGCGCATGCCGT
CGCGCCTCTCCTCCTGCTCACCAGACACGTACCTGCATTTCTGCCGCCTC--CACACCACCCGACGTGCATAGTACAACC
ACCATGGCCATGGCGCCATCCGCGCGCGTGTCGCTGATGCTCGCCGTGGTGCTCGTGTGCGCGCTGCTCGCCGCCAGGCC
TGCAGAGGCGA---CCGGCGGCTTGGTGTGCAATCCGCTCCAGGACAAGACGTGCAAGTCGGGGGACCCCAAGGCGTCTG
AGAACACGGAGGAGGGGGGCGGGTTCGGCGCGAAGCTGCCATCGCCGCCCGTTCCGGGCCACGGTATGATCGACGGAGAC
ATCGACGATGAGTTGCCGTCGTTCAGCACCCACAAGACCATCCTCGGTCACTGGGAGGATCCGGTGCTCGAAGTCTGACA
TCTACGTGCATGGTTGTGTCTTCTTGCATTCGCATTGCTTGTGTAGTTGTGTTGTTGTCCAGAAGAAAGAATGAGACAAA
G--------GAAGAGATGAGAGAGTGAGCGTGCCACGATAAATG----------------------ATTTGCCACTTG--
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>chr3D_1_TraesCS3D01G025500
TCAGTAATTCTGCCAATCGTCGACCATAAGGGAGTAACAGTTTATTAGTACTCCCGTTTGAAGCTAATTACTCCATAAGG
GAGTAACAGCAATTTTATTTACTATATTAAAGTTGCTAAGCTAAGAGCCCCCTCCTTTTGAATTTTTTTAGTGCTTCACG
AAGTTAACACTCACACGCGACAACAATTAACAGTTCCCCAAAAATGAATAGTACTTCCTCTTTTGCGGTTTATAGGTCTT
ATCTCAAAATTTTAGATTTCTCATTTTATAAGTCTCAATTTGATGGTTCTCTACCACATGTTCAGATTTTAAGGTGCATT
AAATCATTGCATGCAAGTATTAAGAAAAAATTAACCAATGCATGGACTTTATGCATGCATGCATTGCAATTAATGCATTG
ATAAACATAATTTTTTAAGAAAAACGAGTGCATTAATTGAGTGTTTTTGCAAACTAAAAAAATTATTCCACCACTCACCA
TCTACCTTGATTGATGAGATTTTTGAATTGAGCCCTATAAACCGTAAAGGAGGTAGTACCTCCACATCTGCCTCTACCCG
CCGCGTTGTGCATCGGCCCGCGGCAACTGCTGGATTTAGCCGCCGTCACTCTCCCTTGTGCGTGGCCGGTCTGCAACAAA
CCCTTTGTTGCAGCCGAGCCAGCTGAAATAAGGACCAAATTGAAAAAACTGAACTGGGTAGAGATTGCTCGTGAGCTGTC
TGATCAAAATTAGATCTGACGGCCACAAAGTGGGTCGAGACATGTAGAAAAATCAACCGGCCGAGTCATAGTCTTTCCGT
TATTGTATAGAAATAGAAAGTTGTGTTGGCATCCTAGCATGCGAAGACACATCCAGCGTCTATTTCAGGCTTGTCGTTGA
TCAGCTCCTGAACACCCGCTCCCATCGTCTATTTCAGGCAGC----------GTAACCGTGGGGACGGTGCCCAGCCACA
CAAACCGAGCAGCGTCCGCAACCATCGCACCTCTCGGCTAAATCCAGCATCCCATCGCCGCCTTTTAAAGCGCATGCCGT
CGCGCCTCTCCTCCTGCTCACCAGACACGTACCTGCATTTCTGCCGCCTC--CACACCACCCGACGTGCATAGTACAACC
ACCATGGCCATGGCGCCATCCGCGCGCGTGTCGCTGATGCTCGCCGTGGTGCTCGTGTGCGCGCTGCTCGCCGCCAGGCC
TGCAGAGGCGA---CCGGCGGCTTGGTGTGCAATCCGCTCCAGGACAAGACGTGCAAGTCGGGGGACCCCAAGGCGTCTG
AGAACACGGAGGAGGGGGGCGGGTTCGGCGCGAAGCTGCCATCGCCGCCCGTTCCGGGCCACGGTATGATCGACGGAGAC
ATCGACGATGAGTTGCCGTCGTTCAGCACCCACAAGACCATCCTCGGTCACTGGGAGGATCCGGTGCTCGAAGTCTGACA
TCTACGTGCATGGTTGTGTCTTCTTGCATTCGCATTGCTTGTGTAGTTGTGTTGTTGTCCAGAAGAAAGAATGAGACAAA
G--------GAAGAGATGAGAGAGTGAGCGTGCCACGATAAATG----------------------ATTTGCCACTTGTC
CCTGTTAATATCGTGGACGCTCAGGAAGAAGTTATAGATTCTAGTAATTGATATGGCCTAGTTTTGGTCTTCTTATTGTT
GGCCTTGGGATTTTTGGAGTGGGAGGTACCGACTCACTGATTCGCCTTGGTCCTTCATTTCTTCAGTTTTATTTTGTTTC
TTTTTAGGTTTTTACTTGG-TTTTTC-TTTTTACTTTTTTATTCAACACATGTCTATGTTTTTT-CAAACACGTAGTTTT
TTGTATACATCAAGAACTAATTTTTGTATATGTTTAATATTTTTTTAATACGCGATTAACATTATTTTGGAATAAATGTT
TTGATGTCTACTTCTATTTTCAACACAAGTCTATATTTTCATACACATCGTACATTTATTATATACATCAAGAACATGTT
TTTATACTTC-AAAAAATTCAAGTCCATAAATAGAATGTTTATTTAAATATATGTATTGACGTCTTTTCATACACATTAT
ACAATTTCTGTAAACATAAGGAACATATTTTAAGGACATCACTAACATTTTTTAAGAACATGACTAATTTATGCTTTGAT
TTCTACTT-TTTTCATATATATTATACATTTTTGGTTTACATATGAAAA--AATATACACGTTTAACATTCTCAAATACA
AGAATAACATTATTTAAGTATATGTTTTGTTGTCTAATT-TTTATACACACTGTACATATTTTG--TATACGTGAAACGT
TTTTTATACATGTTTAGG----TTTCTTCATATAAATGATTAAAAAGTTAAAAACACATGTTTTTTTAATATTTTCCGAA
TACTATCGAAATTTATTAATTGTAACAAACTTTTTAAATGTTTTAAT---TTTTTAAAAGTAATGCAATGAT-TTTTGAA
TGTATGTCAACATATTTTAAACGTACTATGAACATTTTCAAAATTAAAGTATGTTCTTCAGAATATGAATCAAATCAATA
AAAGCAAAGAAAA-------TAGAAATAAATGAACAACATGACAAAAGTAACGAAGAACAATA
>chr3B_732
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-----------AGATCTGACGGCCGGAGGGGGAC-CGAGACATGCAGAAAAATCAACCGGCTAAGCCATAGTGTTTCCCT
TATTTTATAGAAATAGAAAGTTGTTTTGGCGTCCTAACATGCGTAGACACATCCAGCGTCTATTTCAGGTTTGTCGTTGA
TCAGCTCTTGAACAC--------------------------C----------GTAACCGCGGGGACGGTGCCCAGCCACA
CAAACCGAGCAACGTCCGCAACCATCGCACCTCACGGCTAAATCCAGCATCCCATCGCCGCCTTTTAAAGCGCACGCCGC
CGCGCCTCTCCTCCTGCTCACCGGACACGCACCCGCATCTGTGCCGCCTC--CACACCACCCGCCGTGCATAGTACAACC
AACACGGCCATGGCGCCATCCGCGCGCGTGTCGCTGATGCTCGCCGTGGTGCTCGCGTGCGCGCTGCTCGCCGCCAGGCA
CGCAGACGCCGCCGCCGGCGGCCTCGCGTGCAATCCGCTCCAGGACAAGACGTGCAAGCCGGCGGACCCCAAGGCGCCCG
AGAACACGGAGGAGGGCGGCGGGTTCGGCGCGAGGCTGCCATCGCCGCCCATTCCGGGCCACGGTATGATCGACGGGGAC
ATCGACGATGAGTTGCCGTCGTTCAGCACCCACAAGACCATCCTCGGTCACTGGGAGGATCCGGTGCTCGAAGTCTGACA
TCTAAGTGCATGGTTGTGTCTTCTCGCATTCGCGTTGATAGTGTAGTTGTGATGTTGCCCAGAAGAAAATATGAGACAAA
GGAAGAGCCGAAGAGATGAGAGAGTGAGCGT------------------------------------------------C
CCTGTTAATATCGTGGACGTTCGGGAAGAAGTTGTAGATTCTAGTAACCGATCTGGCCTAGTTTTGGTCTTCCTAGTGTT
GGCCTTGGGATTTTTGCAGTGGGAGGTACCGACTCACTGTTTCGCCTTGGTCCTTCATTTCTTCACTTTTATTTACTTTC
TTTTTAGC-TTTTACTTGGTTTTTTCTTTTTTACTTTTTTATTCAACACATGTCTATGTTTTTT-CAAACGCGTAGTTTT
TTGTATACATCAAGAACAAATTTTTGTATATGTTTAATATTTTTTGAATACGTGGTTAACATTATTTTGGAATAAATGTT
TTGATCTCTACTTCTAATTTCAACACAAGTCTGTATTTTCATACACATCGTACATTTCTTATATACATCAAGAACATGTT
TTTATACTTTGAAAAAATTCAACTGCATAAATAGAATGTTTGTTTAAATATATGTATTGACGTATTTTCATACACACTAC
ACAATTTCTGTTAACAAAAGGAACATATTTTAAGGACATGATAAATC-TTTTTAAGAACGTGACTAATATATGCTTTGAT
TTCTACTTTTTTTCATATATATTATACATTTTTGGTTTACATATGAAAAAAAATATACACGTTTGACATTTTCAAATATA
AGAATAACATTATTTAAGTATATGTTTTGTTGTCTAATTTTTTAAACACATTGTACATATTTCTTATATACATCAAATGT
TTTTTATACACGTTTAGG----TTTCTTCAAATAAATGATTAAAAAGTTTCAGACACATATTTTTTA-ACATTTTCTGAA
TACTATCGAAATTTATTAATTGTAACGAACTTTTTCAAATGATATTGATATTTTTAAAA-TAATGCGATGAT-TTTTTAA
TGTACGTCAAGATATTTTAAACTTGCTATGACTGTTTTAAAAATTAAAGTATGTTCTTCATAAAT--------ATAAAGA
AAAACAATAAAAGCAAAAAATAGAAATAAATGAACAACGGGACAAACATAACGAAGAACAATA
>chr3A_740
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-------------------CGTCCACAGAGGGGGTCAAGACATGCAGAAAAATCAATTGGTTGAGCCATAGTCTTTCCGT
TATTGTATAGAAATAGAAAGTTGTGTTGGCGTCCTAGCATGCGAAGACACATCCATCGTCTATTTCAGGTATGTCGTTGA
TCAGCTCATGAACAC--------------------------CCGCTCCCAGCGTAACCATGGGGACGGTGCCCAGCCACA
CAAACCGAGCAGCCTCCGCAACCATCGCATCTCTCGGCTAAATCCAGCATCCCATCGCCGCCTTTTAAAGCGCATGCCGC
CGCGCCTCTCCTCCTGCTCACCAGACACGCACCTGCATCTGTGCCGCCTCCACACACCACCCGCCGTGCATAGTAGAACC
AACATGGCCATGGCGCCATCCGCGCGAGTGTCGCTGATGCTCGCCGTGGTGCTCGCGTGCGCGCTGCTCGCC--------
----------A---CCGGCGGCCTCGTGTGCAATCCGCTCCAGGACAAGACGTGCAAGCCGGGGGACCCCAAGGCGCCCG
AGAACACGGAGGAGGGGGGCGGGTTCGGCGCGAGGCTGTCATCGCCGCCCATTCCGGGCCACGGTATGATCGACGGAGAC
ATCGACGACGAGTTGCCGTCGTTCAGCACCCACAAGACCATCCTCGGCCACTGGGAGGATCCGGTGCTCGAAGTCTGACA
TCTAAGTGCATGCTTGTGTCTTCTTGCATTCCCATTGCTTGTGTAGTTGTGTTGTTGTCCGGAAGAAAGAATGGGACAAA
G--------GAAGAGATGAGAGAGTGAGCGTGTCACGATAATCGATCCACGCTAGCTGATGACTAAATTTGCCAGTTGTC
CCTGTTAATATCGTGGACATTCAGGAAGAAGCTATAGTTTCTAGTAATCGATTTGGCCTAGTTTTGGTCTTCCTATTGTT
GGCCTTGTGATTTTTGGAGTGGGAGTTACCGACTCACTGTTTCGCCTTGGTCCTTCATTTCTTCAGTTTTATTTTGTTTC
CTTTTAGC-TTTTACTTGG-TTTTTCTTTTTTACTTTTTTATTCAACACATGTCTATGTTTTTTTCAAACACGTAGCTTT
TTGTATACATCAAGAACAAATTTTTGTATATGTTTAATATTTTTTGAATACGCGCTTAACGTTATTTTAGAATAAATGTT
TTGATGTCTACTCCTATTTTCAACACAAGTCTATATTTTCATACATATCGTACATTTCTTATATACGTCAAGAACATGTT
TTTATACTTC-AAAAGGTTCAAGTGCATAAATAGAATGCTTGTTTACATATATGTATTGATGTATTTTCATACACATTAT
ACAATTTCCGTAAACATAAGGAGCATTTTTTAAGGATATGACTAACATTTTTTAAGAACATGA--------TGTTTTGAT
TTCTACCT-TTTTCATATATATTATACATTTTTCGTTTACATATGAAAAATATAC-------------------------
------ACATTATTTAAGTATATGTTTTGTTGTCTAATCTGT--------TTATACATATTTTGTATATACGTGAAACA-
TTTTTATACATGTTTAGCTTTCTTTCTTCATATAAATGATTAAAAAGTTTCAAACACATATTTTTTTTACATTTTCTGAA
TGCTATCGATATTTATTAATTGTAATAAACTTTTAAAAATGTTATTGATATTTTTAAAAGTTATGCAATGATATTTTTAA
TGTACGTCAACATATTTTAGACGTTCTATGAACATTTTTAAAATTAAAGTATGTTTTTCAGAAAT--------ATAAATA
ATAGAAAAGAAAAG----------AAAAAATGAACAATGGGATAAATGTAAAGAAGTACAA--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------------S--S-------------S----------------S---S--------------
------------------------------S--------------------------------------S----------
-------S-------SSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-------------------------------------------------------------------------------S
-----------------------------S--------S-S----------------------S----------------
-S-----------------------------------------------------S-----------------------S
S-----S--S------------S-S---------------------------------S-----------------S-S-
---------------------------------S----------------S-----------------------------
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----S---------------------------------------------------------------------------
--------------------------------S--------SS-------------------------------S-----
-------------------S----------------------------S---S-------------------S-------
---------------------------------------S----------------------------------------
-------SS-----------------------------------------------------------------------
-----------------S---------------------------S--------S-------------------------
---------------------------------------------------------S----------------------
------------------------S----------------S---------------------S----------------
---------------------------------------S----------------------------S-----------
----------------------------------------------------------------S-----S-------S-
--------------------------------------------S-----S-----------------------------
-------------------------------------------------SS--------S-------S-S------S---
--------------------------------------SSS--SSSS------------------------------S--
----S-------------------S-------------S------------------------SSSSSSSSSS--S----
--------------------------------------SS------S----------------
>forward_600
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--------------------CGGCAACTGCTGGATTTAGC----------------------------------------
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>reverse_1563
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------------------------------------------TGATTTGCCACTTGTCCCTGT-----------------
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>forward_602
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----------------------GCAACTGCTGGATTTAGCCG--------------------------------------
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>reverse_1720
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---------------------------------------ATTCGCCTTGGTCCTTCATT---------------------
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