Multiple sequence alignment - TraesCS3D01G024800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G024800 chr3D 100.000 2760 0 0 1 2760 8363692 8366451 0.000000e+00 5097
1 TraesCS3D01G024800 chr3D 95.983 1195 40 3 1530 2720 8332992 8331802 0.000000e+00 1934
2 TraesCS3D01G024800 chr3D 100.000 346 0 0 2984 3329 8366675 8367020 1.010000e-179 640
3 TraesCS3D01G024800 chr3D 97.573 206 5 0 2984 3189 8331405 8331200 1.470000e-93 353
4 TraesCS3D01G024800 chr3D 89.908 109 10 1 35 143 94028669 94028562 4.480000e-29 139
5 TraesCS3D01G024800 chr3B 89.424 2099 185 19 523 2603 10232955 10235034 0.000000e+00 2612
6 TraesCS3D01G024800 chr3B 95.880 267 8 1 2984 3250 10235120 10235383 2.370000e-116 429
7 TraesCS3D01G024800 chr3A 89.469 1092 106 6 1314 2401 12484940 12486026 0.000000e+00 1371
8 TraesCS3D01G024800 chr3A 87.500 352 23 10 2984 3324 12486408 12486749 1.450000e-103 387
9 TraesCS3D01G024800 chr3A 89.362 235 11 10 2174 2401 12455153 12454926 1.960000e-72 283
10 TraesCS3D01G024800 chr3A 86.522 230 23 6 142 365 12483729 12483956 2.570000e-61 246
11 TraesCS3D01G024800 chr3A 94.231 156 9 0 2984 3139 12454544 12454389 4.290000e-59 239
12 TraesCS3D01G024800 chr3A 87.940 199 22 2 1936 2134 12455342 12455146 2.000000e-57 233
13 TraesCS3D01G024800 chr3A 89.091 110 11 1 29 138 515726037 515725929 5.790000e-28 135
14 TraesCS3D01G024800 chr6D 91.509 106 9 0 33 138 412044532 412044637 2.680000e-31 147
15 TraesCS3D01G024800 chr2A 93.069 101 6 1 36 135 29739264 29739364 2.680000e-31 147
16 TraesCS3D01G024800 chr5A 92.233 103 7 1 33 135 491734848 491734949 9.630000e-31 145
17 TraesCS3D01G024800 chr5A 92.079 101 8 0 35 135 649707941 649708041 3.460000e-30 143
18 TraesCS3D01G024800 chr5D 92.233 103 5 1 36 138 122418353 122418254 3.460000e-30 143
19 TraesCS3D01G024800 chr1D 92.157 102 7 1 37 138 310858597 310858497 3.460000e-30 143
20 TraesCS3D01G024800 chr1B 91.262 103 8 1 36 138 468071260 468071159 4.480000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G024800 chr3D 8363692 8367020 3328 False 2868.500000 5097 100.000000 1 3329 2 chr3D.!!$F1 3328
1 TraesCS3D01G024800 chr3D 8331200 8332992 1792 True 1143.500000 1934 96.778000 1530 3189 2 chr3D.!!$R2 1659
2 TraesCS3D01G024800 chr3B 10232955 10235383 2428 False 1520.500000 2612 92.652000 523 3250 2 chr3B.!!$F1 2727
3 TraesCS3D01G024800 chr3A 12483729 12486749 3020 False 668.000000 1371 87.830333 142 3324 3 chr3A.!!$F1 3182
4 TraesCS3D01G024800 chr3A 12454389 12455342 953 True 251.666667 283 90.511000 1936 3139 3 chr3A.!!$R2 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.102481 CATACTCCGCTACACCGCTT 59.898 55.0 0.00 0.0 0.00 4.68 F
1216 1953 0.033208 CTTCCCCTATGCAAGGCCAA 60.033 55.0 5.01 0.0 45.03 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 2021 0.026803 CTTCCGCGCTTTGATACAGC 59.973 55.0 5.56 0.00 0.0 4.40 R
2701 3493 0.168788 CGACCATGGCATGAACACAC 59.831 55.0 28.43 11.13 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.593492 GAAACTGAAATTCAAGGCACTAATTT 57.407 30.769 0.00 4.13 38.75 1.82
26 27 7.951530 AACTGAAATTCAAGGCACTAATTTG 57.048 32.000 0.00 0.00 36.92 2.32
27 28 5.928264 ACTGAAATTCAAGGCACTAATTTGC 59.072 36.000 0.00 0.00 36.92 3.68
28 29 5.851720 TGAAATTCAAGGCACTAATTTGCA 58.148 33.333 4.59 0.00 44.94 4.08
29 30 6.286758 TGAAATTCAAGGCACTAATTTGCAA 58.713 32.000 0.00 0.00 44.94 4.08
30 31 6.765036 TGAAATTCAAGGCACTAATTTGCAAA 59.235 30.769 15.44 15.44 44.94 3.68
31 32 6.790285 AATTCAAGGCACTAATTTGCAAAG 57.210 33.333 18.19 6.55 44.94 2.77
32 33 4.935352 TCAAGGCACTAATTTGCAAAGT 57.065 36.364 18.19 17.64 44.94 2.66
33 34 6.398234 TTCAAGGCACTAATTTGCAAAGTA 57.602 33.333 18.19 17.83 44.94 2.24
34 35 6.398234 TCAAGGCACTAATTTGCAAAGTAA 57.602 33.333 18.84 5.88 44.94 2.24
35 36 6.991938 TCAAGGCACTAATTTGCAAAGTAAT 58.008 32.000 18.84 7.77 44.94 1.89
36 37 8.116651 TCAAGGCACTAATTTGCAAAGTAATA 57.883 30.769 18.84 8.27 44.94 0.98
37 38 8.026607 TCAAGGCACTAATTTGCAAAGTAATAC 58.973 33.333 18.84 11.08 44.94 1.89
38 39 7.703058 AGGCACTAATTTGCAAAGTAATACT 57.297 32.000 18.84 12.10 44.94 2.12
39 40 7.762382 AGGCACTAATTTGCAAAGTAATACTC 58.238 34.615 18.84 8.92 44.94 2.59
40 41 6.972901 GGCACTAATTTGCAAAGTAATACTCC 59.027 38.462 18.84 12.06 44.94 3.85
41 42 6.972901 GCACTAATTTGCAAAGTAATACTCCC 59.027 38.462 18.84 2.28 42.49 4.30
42 43 7.148069 GCACTAATTTGCAAAGTAATACTCCCT 60.148 37.037 18.84 0.00 42.49 4.20
43 44 8.398665 CACTAATTTGCAAAGTAATACTCCCTC 58.601 37.037 18.84 0.00 0.00 4.30
44 45 8.329502 ACTAATTTGCAAAGTAATACTCCCTCT 58.670 33.333 18.84 0.00 0.00 3.69
45 46 7.396540 AATTTGCAAAGTAATACTCCCTCTG 57.603 36.000 18.19 0.00 0.00 3.35
46 47 5.499004 TTGCAAAGTAATACTCCCTCTGT 57.501 39.130 0.00 0.00 0.00 3.41
47 48 5.086104 TGCAAAGTAATACTCCCTCTGTC 57.914 43.478 0.00 0.00 0.00 3.51
48 49 4.081087 TGCAAAGTAATACTCCCTCTGTCC 60.081 45.833 0.00 0.00 0.00 4.02
49 50 4.683671 GCAAAGTAATACTCCCTCTGTCCC 60.684 50.000 0.00 0.00 0.00 4.46
50 51 4.348020 AAGTAATACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
51 52 4.561254 AGTAATACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
52 53 5.681494 AGTAATACTCCCTCTGTCCCATA 57.319 43.478 0.00 0.00 0.00 2.74
53 54 6.039415 AGTAATACTCCCTCTGTCCCATAA 57.961 41.667 0.00 0.00 0.00 1.90
54 55 6.635021 AGTAATACTCCCTCTGTCCCATAAT 58.365 40.000 0.00 0.00 0.00 1.28
55 56 7.776745 AGTAATACTCCCTCTGTCCCATAATA 58.223 38.462 0.00 0.00 0.00 0.98
56 57 8.410623 AGTAATACTCCCTCTGTCCCATAATAT 58.589 37.037 0.00 0.00 0.00 1.28
57 58 9.710818 GTAATACTCCCTCTGTCCCATAATATA 57.289 37.037 0.00 0.00 0.00 0.86
59 60 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
60 61 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
61 62 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
62 63 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
63 64 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
64 65 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
65 66 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
66 67 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
67 68 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
68 69 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
69 70 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
70 71 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
71 72 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
72 73 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
73 74 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
79 80 5.405331 AAGAACGTTTTTGACACTAGAGC 57.595 39.130 0.46 0.00 0.00 4.09
80 81 4.439057 AGAACGTTTTTGACACTAGAGCA 58.561 39.130 0.46 0.00 0.00 4.26
81 82 4.508124 AGAACGTTTTTGACACTAGAGCAG 59.492 41.667 0.46 0.00 0.00 4.24
82 83 3.793559 ACGTTTTTGACACTAGAGCAGT 58.206 40.909 0.00 0.00 38.32 4.40
93 94 2.544267 ACTAGAGCAGTGTCAAAAACGC 59.456 45.455 0.00 0.00 35.62 4.84
103 104 6.425577 AGTGTCAAAAACGCTAGTGTTAAA 57.574 33.333 21.40 5.52 46.85 1.52
104 105 6.844254 AGTGTCAAAAACGCTAGTGTTAAAA 58.156 32.000 21.40 5.84 46.85 1.52
105 106 7.306953 AGTGTCAAAAACGCTAGTGTTAAAAA 58.693 30.769 21.40 6.18 46.85 1.94
106 107 7.271868 AGTGTCAAAAACGCTAGTGTTAAAAAC 59.728 33.333 21.40 16.61 46.85 2.43
107 108 6.248839 TGTCAAAAACGCTAGTGTTAAAAACG 59.751 34.615 21.40 8.03 0.00 3.60
108 109 6.249050 GTCAAAAACGCTAGTGTTAAAAACGT 59.751 34.615 21.40 1.85 0.00 3.99
109 110 6.800892 TCAAAAACGCTAGTGTTAAAAACGTT 59.199 30.769 21.40 7.99 43.31 3.99
110 111 6.779385 AAAACGCTAGTGTTAAAAACGTTC 57.221 33.333 21.40 0.00 40.92 3.95
111 112 5.723492 AACGCTAGTGTTAAAAACGTTCT 57.277 34.783 19.88 0.00 37.71 3.01
112 113 5.723492 ACGCTAGTGTTAAAAACGTTCTT 57.277 34.783 2.24 0.00 0.00 2.52
113 114 6.826893 ACGCTAGTGTTAAAAACGTTCTTA 57.173 33.333 2.24 0.00 0.00 2.10
114 115 7.412137 ACGCTAGTGTTAAAAACGTTCTTAT 57.588 32.000 2.24 0.00 0.00 1.73
115 116 8.519492 ACGCTAGTGTTAAAAACGTTCTTATA 57.481 30.769 2.24 0.00 0.00 0.98
116 117 9.143631 ACGCTAGTGTTAAAAACGTTCTTATAT 57.856 29.630 2.24 0.00 0.00 0.86
117 118 9.962759 CGCTAGTGTTAAAAACGTTCTTATATT 57.037 29.630 0.00 0.00 0.00 1.28
126 127 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
127 128 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
128 129 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
129 130 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
130 131 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
131 132 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
132 133 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
133 134 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
134 135 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
135 136 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
136 137 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
137 138 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
138 139 0.257039 TGGGACGGAGGGAGTAGTAC 59.743 60.000 0.00 0.00 0.00 2.73
139 140 0.257039 GGGACGGAGGGAGTAGTACA 59.743 60.000 2.52 0.00 0.00 2.90
140 141 1.341383 GGGACGGAGGGAGTAGTACAA 60.341 57.143 2.52 0.00 0.00 2.41
162 163 7.992008 ACAATACAATAATTTTCTGTACCCCG 58.008 34.615 0.00 0.00 0.00 5.73
166 167 5.646360 ACAATAATTTTCTGTACCCCGTCTG 59.354 40.000 0.00 0.00 0.00 3.51
176 177 0.614979 ACCCCGTCTGCACATACTCT 60.615 55.000 0.00 0.00 0.00 3.24
185 186 5.915758 CGTCTGCACATACTCTAAGTTATCC 59.084 44.000 0.00 0.00 0.00 2.59
186 187 6.238786 CGTCTGCACATACTCTAAGTTATCCT 60.239 42.308 0.00 0.00 0.00 3.24
187 188 7.493367 GTCTGCACATACTCTAAGTTATCCTT 58.507 38.462 0.00 0.00 37.17 3.36
194 195 7.290481 ACATACTCTAAGTTATCCTTTCCCCTC 59.710 40.741 0.00 0.00 34.46 4.30
199 200 6.909158 TCTAAGTTATCCTTTCCCCTCTTCAT 59.091 38.462 0.00 0.00 34.46 2.57
236 237 7.147312 TGTTTCAAAATTCAGAGTGGCATTAG 58.853 34.615 0.00 0.00 0.00 1.73
238 239 4.100529 CAAAATTCAGAGTGGCATTAGCG 58.899 43.478 0.00 0.00 43.41 4.26
243 244 1.662629 CAGAGTGGCATTAGCGAAGTG 59.337 52.381 0.00 0.00 43.41 3.16
250 251 1.398390 GCATTAGCGAAGTGTCTTGGG 59.602 52.381 0.00 0.00 0.00 4.12
251 252 2.935238 GCATTAGCGAAGTGTCTTGGGA 60.935 50.000 0.00 0.00 0.00 4.37
252 253 2.450609 TTAGCGAAGTGTCTTGGGAC 57.549 50.000 0.00 0.00 42.42 4.46
263 264 2.708861 TGTCTTGGGACCACAACATACT 59.291 45.455 0.00 0.00 41.47 2.12
266 267 0.611200 TGGGACCACAACATACTCCG 59.389 55.000 0.00 0.00 0.00 4.63
273 274 2.268298 CACAACATACTCCGCTACACC 58.732 52.381 0.00 0.00 0.00 4.16
277 278 0.102481 CATACTCCGCTACACCGCTT 59.898 55.000 0.00 0.00 0.00 4.68
278 279 0.102481 ATACTCCGCTACACCGCTTG 59.898 55.000 0.00 0.00 0.00 4.01
279 280 2.552585 TACTCCGCTACACCGCTTGC 62.553 60.000 0.00 0.00 0.00 4.01
280 281 3.649277 CTCCGCTACACCGCTTGCT 62.649 63.158 0.00 0.00 0.00 3.91
281 282 2.183300 CCGCTACACCGCTTGCTA 59.817 61.111 0.00 0.00 0.00 3.49
282 283 1.878522 CCGCTACACCGCTTGCTAG 60.879 63.158 0.00 0.00 0.00 3.42
283 284 2.517450 CGCTACACCGCTTGCTAGC 61.517 63.158 8.10 8.10 44.21 3.42
303 307 2.941415 GCATTCAGTGGGAGTACAAGGG 60.941 54.545 0.00 0.00 0.00 3.95
329 333 3.141398 ACTGTGTTGTGCATGTCTAAGG 58.859 45.455 0.00 0.00 0.00 2.69
332 336 2.095567 GTGTTGTGCATGTCTAAGGCTG 60.096 50.000 0.00 0.00 0.00 4.85
333 337 2.154462 GTTGTGCATGTCTAAGGCTGT 58.846 47.619 0.00 0.00 0.00 4.40
334 338 3.244387 TGTTGTGCATGTCTAAGGCTGTA 60.244 43.478 0.00 0.00 0.00 2.74
345 351 6.252995 TGTCTAAGGCTGTATTGGGATTTTT 58.747 36.000 0.00 0.00 0.00 1.94
359 365 2.854836 TTTTTGATCCGGGCCCCA 59.145 55.556 18.66 5.01 0.00 4.96
360 366 1.304879 TTTTTGATCCGGGCCCCAG 60.305 57.895 18.66 8.42 0.00 4.45
361 367 3.955543 TTTTGATCCGGGCCCCAGC 62.956 63.158 18.66 6.42 38.76 4.85
364 370 4.883354 GATCCGGGCCCCAGCTTG 62.883 72.222 18.66 0.00 39.73 4.01
368 374 4.033776 CGGGCCCCAGCTTGAAGA 62.034 66.667 18.66 0.00 39.73 2.87
369 375 2.440599 GGGCCCCAGCTTGAAGAA 59.559 61.111 12.23 0.00 39.73 2.52
370 376 1.680314 GGGCCCCAGCTTGAAGAAG 60.680 63.158 12.23 0.00 39.73 2.85
371 377 1.075659 GGCCCCAGCTTGAAGAAGT 59.924 57.895 0.00 0.00 39.73 3.01
376 1100 3.756117 CCCCAGCTTGAAGAAGTAGTTT 58.244 45.455 0.00 0.00 0.00 2.66
380 1104 5.066593 CCAGCTTGAAGAAGTAGTTTCCTT 58.933 41.667 0.00 0.00 36.40 3.36
386 1110 8.499967 GCTTGAAGAAGTAGTTTCCTTTTCTAG 58.500 37.037 0.00 0.00 36.40 2.43
391 1115 7.510407 AGAAGTAGTTTCCTTTTCTAGTGCTT 58.490 34.615 0.00 0.00 36.40 3.91
413 1138 7.336931 TGCTTATTTCCTCTCAAACATAGGTTC 59.663 37.037 0.00 0.00 35.82 3.62
423 1148 9.918630 CTCTCAAACATAGGTTCAAATTTGATT 57.081 29.630 21.10 12.36 35.97 2.57
449 1174 8.490311 TGAAACAAAATAATTTTCTGTTCCCCT 58.510 29.630 0.00 0.00 31.18 4.79
451 1176 8.902540 AACAAAATAATTTTCTGTTCCCCTTC 57.097 30.769 0.00 0.00 28.70 3.46
463 1188 3.775316 TGTTCCCCTTCTCATTCTAGGTC 59.225 47.826 0.00 0.00 0.00 3.85
468 1193 4.410228 CCCCTTCTCATTCTAGGTCATGAA 59.590 45.833 0.00 0.00 0.00 2.57
472 1197 7.419981 CCCTTCTCATTCTAGGTCATGAATCTT 60.420 40.741 0.00 0.00 31.35 2.40
499 1228 4.327982 TTTGCGAGGATCTAGATCAAGG 57.672 45.455 29.33 19.16 39.54 3.61
500 1229 2.242926 TGCGAGGATCTAGATCAAGGG 58.757 52.381 29.33 17.68 39.54 3.95
509 1238 3.375699 TCTAGATCAAGGGTCTGGTTCC 58.624 50.000 0.00 0.00 0.00 3.62
520 1249 3.557264 GGGTCTGGTTCCAAGTGTTCTAG 60.557 52.174 0.00 0.00 0.00 2.43
521 1250 3.557264 GGTCTGGTTCCAAGTGTTCTAGG 60.557 52.174 0.00 0.00 0.00 3.02
530 1259 6.195600 TCCAAGTGTTCTAGGTAAAATGGT 57.804 37.500 0.00 0.00 0.00 3.55
552 1281 6.942005 TGGTATTCATAATCATTGGCTAGTGG 59.058 38.462 0.00 0.00 0.00 4.00
553 1282 6.942576 GGTATTCATAATCATTGGCTAGTGGT 59.057 38.462 0.00 0.00 0.00 4.16
576 1305 9.268268 TGGTAAATTAATATAGTTGGCTCTTCG 57.732 33.333 0.00 0.00 0.00 3.79
577 1306 9.269453 GGTAAATTAATATAGTTGGCTCTTCGT 57.731 33.333 0.00 0.00 0.00 3.85
582 1311 9.694137 ATTAATATAGTTGGCTCTTCGTAGTTC 57.306 33.333 0.00 0.00 0.00 3.01
593 1322 5.978322 GCTCTTCGTAGTTCTAACATAAGGG 59.022 44.000 0.00 0.00 0.00 3.95
604 1333 7.998964 AGTTCTAACATAAGGGATTGGTATTGG 59.001 37.037 0.00 0.00 0.00 3.16
633 1362 6.583562 AGAATATGGGTAAGTGCTAGAACAC 58.416 40.000 3.00 0.00 41.02 3.32
652 1384 4.335416 ACACTTAGAAATGGTGACCATGG 58.665 43.478 19.32 11.19 44.40 3.66
657 1389 6.378280 ACTTAGAAATGGTGACCATGGAAATC 59.622 38.462 19.32 11.39 44.40 2.17
658 1390 3.696051 AGAAATGGTGACCATGGAAATCG 59.304 43.478 19.32 0.00 44.40 3.34
663 1395 3.016736 GGTGACCATGGAAATCGACAAT 58.983 45.455 21.47 0.00 0.00 2.71
671 1403 6.379703 ACCATGGAAATCGACAATTTATTGGA 59.620 34.615 21.47 0.00 41.96 3.53
674 1406 7.461182 TGGAAATCGACAATTTATTGGACTT 57.539 32.000 7.33 0.00 41.96 3.01
677 1409 9.285770 GGAAATCGACAATTTATTGGACTTTAC 57.714 33.333 7.33 0.06 41.96 2.01
683 1415 7.744715 CGACAATTTATTGGACTTTACAGTGTC 59.255 37.037 0.00 0.00 41.96 3.67
684 1416 7.581476 ACAATTTATTGGACTTTACAGTGTCG 58.419 34.615 0.00 0.00 41.96 4.35
687 1419 7.972832 TTTATTGGACTTTACAGTGTCGAAT 57.027 32.000 0.00 0.00 41.79 3.34
690 1422 5.917541 TGGACTTTACAGTGTCGAATTTC 57.082 39.130 0.00 0.00 31.22 2.17
691 1423 4.446385 TGGACTTTACAGTGTCGAATTTCG 59.554 41.667 12.54 12.54 35.53 3.46
692 1424 4.446719 GGACTTTACAGTGTCGAATTTCGT 59.553 41.667 17.61 1.05 35.64 3.85
693 1425 5.324739 ACTTTACAGTGTCGAATTTCGTG 57.675 39.130 17.61 11.27 41.35 4.35
696 1428 5.970140 TTACAGTGTCGAATTTCGTGAAA 57.030 34.783 17.61 0.00 41.35 2.69
697 1429 4.868450 ACAGTGTCGAATTTCGTGAAAA 57.132 36.364 17.61 0.00 41.35 2.29
698 1430 5.224562 ACAGTGTCGAATTTCGTGAAAAA 57.775 34.783 17.61 0.00 41.35 1.94
699 1431 5.025826 ACAGTGTCGAATTTCGTGAAAAAC 58.974 37.500 17.61 8.56 41.35 2.43
736 1468 7.807977 TTCTGAATGATAACTAGGAAATGCC 57.192 36.000 0.00 0.00 0.00 4.40
737 1469 5.991606 TCTGAATGATAACTAGGAAATGCCG 59.008 40.000 0.00 0.00 43.43 5.69
740 1472 7.450074 TGAATGATAACTAGGAAATGCCGTAT 58.550 34.615 0.00 0.00 43.43 3.06
741 1473 7.387673 TGAATGATAACTAGGAAATGCCGTATG 59.612 37.037 0.00 0.00 43.43 2.39
747 1479 0.512952 GGAAATGCCGTATGCTAGCG 59.487 55.000 10.77 0.00 42.00 4.26
753 1485 1.004277 GCCGTATGCTAGCGCTGTAG 61.004 60.000 22.90 12.06 36.87 2.74
754 1486 0.387367 CCGTATGCTAGCGCTGTAGG 60.387 60.000 22.90 12.43 36.97 3.18
757 1489 1.337071 GTATGCTAGCGCTGTAGGTGA 59.663 52.381 22.90 0.00 36.97 4.02
760 1492 1.337071 TGCTAGCGCTGTAGGTGATAC 59.663 52.381 22.90 0.00 36.97 2.24
761 1493 1.663445 GCTAGCGCTGTAGGTGATACG 60.663 57.143 22.90 0.00 37.17 3.06
775 1507 3.682858 GGTGATACGCAGCTAACTTTTCA 59.317 43.478 0.00 0.00 41.71 2.69
782 1514 3.496155 GCAGCTAACTTTTCATGCAGAC 58.504 45.455 0.00 0.00 33.92 3.51
794 1529 7.877097 ACTTTTCATGCAGACTATGATATCTCC 59.123 37.037 3.98 0.00 34.76 3.71
795 1530 5.929058 TCATGCAGACTATGATATCTCCC 57.071 43.478 3.98 0.00 30.03 4.30
810 1546 1.918262 TCTCCCAGGACATGCTCATTT 59.082 47.619 0.00 0.00 0.00 2.32
813 1549 4.018506 TCTCCCAGGACATGCTCATTTTTA 60.019 41.667 0.00 0.00 0.00 1.52
820 1556 5.351465 AGGACATGCTCATTTTTACTACACG 59.649 40.000 0.00 0.00 0.00 4.49
825 1561 8.551205 ACATGCTCATTTTTACTACACGATATG 58.449 33.333 0.00 0.00 0.00 1.78
886 1622 2.685897 TGTTTACTGTTCAGTGTTGCCC 59.314 45.455 14.69 0.00 0.00 5.36
889 1625 0.814010 ACTGTTCAGTGTTGCCCGTC 60.814 55.000 4.58 0.00 0.00 4.79
890 1626 1.831389 CTGTTCAGTGTTGCCCGTCG 61.831 60.000 0.00 0.00 0.00 5.12
892 1628 1.885388 TTCAGTGTTGCCCGTCGTG 60.885 57.895 0.00 0.00 0.00 4.35
906 1642 2.479730 CCGTCGTGGATCCTGAACTTAG 60.480 54.545 14.23 0.00 42.00 2.18
907 1643 2.422479 CGTCGTGGATCCTGAACTTAGA 59.578 50.000 14.23 0.00 0.00 2.10
915 1651 5.047021 TGGATCCTGAACTTAGAAGTGACAG 60.047 44.000 14.23 16.35 39.66 3.51
917 1653 5.201713 TCCTGAACTTAGAAGTGACAGTG 57.798 43.478 19.24 14.11 39.92 3.66
925 1661 6.821388 ACTTAGAAGTGACAGTGTCAAGATT 58.179 36.000 27.03 20.48 44.49 2.40
964 1701 9.560860 AAAATAAATTAGGGAAAGAGGGACAAT 57.439 29.630 0.00 0.00 0.00 2.71
973 1710 4.446889 GGAAAGAGGGACAATATGCATCCT 60.447 45.833 0.19 1.39 27.97 3.24
978 1715 1.425066 GGACAATATGCATCCTCCCCA 59.575 52.381 0.19 0.00 0.00 4.96
995 1732 1.516110 CCAGAGTCCATTCCCCATCT 58.484 55.000 0.00 0.00 0.00 2.90
1058 1795 8.220559 AGGTCAGATAACAGCCATATACAAAAT 58.779 33.333 0.00 0.00 0.00 1.82
1098 1835 8.658609 CAACAAATTTTCCTTATGCTAACATGG 58.341 33.333 0.00 0.00 37.04 3.66
1169 1906 4.654262 TCCAAAGCCTAAGGGTAGTATCAG 59.346 45.833 0.00 0.00 30.99 2.90
1184 1921 7.868415 GGGTAGTATCAGTTGTGATGATAAGAC 59.132 40.741 0.00 0.36 43.66 3.01
1185 1922 8.414003 GGTAGTATCAGTTGTGATGATAAGACA 58.586 37.037 0.00 0.00 43.66 3.41
1191 1928 8.853077 TCAGTTGTGATGATAAGACAAAAGAT 57.147 30.769 0.00 0.00 31.62 2.40
1192 1929 8.724229 TCAGTTGTGATGATAAGACAAAAGATG 58.276 33.333 0.00 0.00 31.62 2.90
1194 1931 9.288576 AGTTGTGATGATAAGACAAAAGATGAA 57.711 29.630 0.00 0.00 31.62 2.57
1196 1933 8.272545 TGTGATGATAAGACAAAAGATGAAGG 57.727 34.615 0.00 0.00 0.00 3.46
1197 1934 7.148188 TGTGATGATAAGACAAAAGATGAAGGC 60.148 37.037 0.00 0.00 0.00 4.35
1200 1937 7.383102 TGATAAGACAAAAGATGAAGGCTTC 57.617 36.000 20.27 20.27 0.00 3.86
1216 1953 0.033208 CTTCCCCTATGCAAGGCCAA 60.033 55.000 5.01 0.00 45.03 4.52
1218 1955 0.636101 TCCCCTATGCAAGGCCAATT 59.364 50.000 5.01 0.00 45.03 2.32
1224 1961 0.248289 ATGCAAGGCCAATTGTCTGC 59.752 50.000 5.01 7.83 32.56 4.26
1239 1976 2.434185 TGCAAGATGTCCGGCGAC 60.434 61.111 9.30 5.41 39.66 5.19
1275 2012 4.100653 CCAGGAAGCTCATCAGTCATTCTA 59.899 45.833 0.00 0.00 0.00 2.10
1277 2014 5.523188 CAGGAAGCTCATCAGTCATTCTAAC 59.477 44.000 0.00 0.00 0.00 2.34
1278 2015 5.424895 AGGAAGCTCATCAGTCATTCTAACT 59.575 40.000 0.00 0.00 0.00 2.24
1284 2021 5.532557 TCATCAGTCATTCTAACTATGCCG 58.467 41.667 0.00 0.00 0.00 5.69
1296 2033 2.213499 ACTATGCCGCTGTATCAAAGC 58.787 47.619 0.00 0.00 37.31 3.51
1485 2222 3.469008 AACTTCTTCCACGACATGTCA 57.531 42.857 24.93 2.94 0.00 3.58
1570 2307 0.670546 CGACTACAAGCAGTGGTGGG 60.671 60.000 0.99 0.00 42.55 4.61
1595 2332 7.977853 GGTCAAGAAGTATAAACCGATTCTACA 59.022 37.037 0.00 0.00 30.30 2.74
1599 2336 8.749026 AGAAGTATAAACCGATTCTACAGAGA 57.251 34.615 0.00 0.00 0.00 3.10
1644 2381 2.913777 TCGACTCGAACGATGATGTT 57.086 45.000 9.70 0.00 34.85 2.71
1683 2420 0.119155 TCCTTGGACTGGTGAGGGAT 59.881 55.000 0.00 0.00 0.00 3.85
1709 2446 1.347097 CTGATCATACGCCGGCATCG 61.347 60.000 28.98 13.29 0.00 3.84
1722 2459 0.725117 GGCATCGTACAAGAAACCCG 59.275 55.000 0.00 0.00 0.00 5.28
1748 2485 1.710244 ACACTCCATGGTGGGATTCAA 59.290 47.619 22.65 0.00 41.09 2.69
1753 2490 3.430453 TCCATGGTGGGATTCAAAAGAC 58.570 45.455 12.58 0.00 38.32 3.01
1914 2651 3.242837 CGACATTGGTAGGATTCGACGTA 60.243 47.826 0.00 0.00 0.00 3.57
2143 2880 1.019673 GTACCTCGAGTACCGCATCA 58.980 55.000 12.31 0.00 44.85 3.07
2156 2893 1.667154 CGCATCACCGGAGAGGAGAA 61.667 60.000 17.91 0.00 42.81 2.87
2283 3020 1.474478 GTGAGCCTCGATCTTGACAGA 59.526 52.381 0.00 0.00 0.00 3.41
2360 3103 9.014297 TGTATCCTTCTTGATTCTTTTTCTTCC 57.986 33.333 0.00 0.00 0.00 3.46
2603 3391 6.648725 TCTCGTGAGATCATCATCAGTACTAG 59.351 42.308 0.00 0.00 40.92 2.57
2626 3414 0.908198 ATGGCCCTCAACTCTCAGAC 59.092 55.000 0.00 0.00 0.00 3.51
2666 3457 8.774546 TTCATCTCTCTTATGACCTCTTATGT 57.225 34.615 0.00 0.00 33.18 2.29
2667 3458 9.868160 TTCATCTCTCTTATGACCTCTTATGTA 57.132 33.333 0.00 0.00 33.18 2.29
3126 4236 0.175760 ACTCGCGGTGTATGCAGAAT 59.824 50.000 6.13 0.00 0.00 2.40
3157 4267 3.634157 TTCCCCTCCTCCATCGCCA 62.634 63.158 0.00 0.00 0.00 5.69
3213 4323 2.686835 GTCCTCCCAGCTGCCTCT 60.687 66.667 8.66 0.00 0.00 3.69
3234 4344 0.850856 GACGACCTGACACAAACGAC 59.149 55.000 0.00 0.00 0.00 4.34
3250 4360 2.213483 GACAACACCACGTCGTCAG 58.787 57.895 0.00 0.00 0.00 3.51
3251 4361 0.526954 GACAACACCACGTCGTCAGT 60.527 55.000 0.00 0.00 0.00 3.41
3252 4362 0.108520 ACAACACCACGTCGTCAGTT 60.109 50.000 0.00 0.00 0.00 3.16
3253 4363 0.575390 CAACACCACGTCGTCAGTTC 59.425 55.000 0.00 0.00 0.00 3.01
3255 4365 1.298863 CACCACGTCGTCAGTTCGT 60.299 57.895 0.00 0.00 38.34 3.85
3256 4366 1.009222 ACCACGTCGTCAGTTCGTC 60.009 57.895 0.00 0.00 35.62 4.20
3257 4367 1.009335 CCACGTCGTCAGTTCGTCA 60.009 57.895 0.00 0.00 35.62 4.35
3258 4368 1.266786 CCACGTCGTCAGTTCGTCAC 61.267 60.000 0.00 0.00 35.62 3.67
3259 4369 1.368493 ACGTCGTCAGTTCGTCACG 60.368 57.895 0.00 0.00 37.19 4.35
3260 4370 1.083209 CGTCGTCAGTTCGTCACGA 60.083 57.895 0.00 0.00 40.14 4.35
3261 4371 0.452287 CGTCGTCAGTTCGTCACGAT 60.452 55.000 0.00 0.00 43.91 3.73
3263 4373 0.869730 TCGTCAGTTCGTCACGATGA 59.130 50.000 0.00 0.00 37.62 2.92
3264 4374 1.467342 TCGTCAGTTCGTCACGATGAT 59.533 47.619 0.00 0.00 37.62 2.45
3267 4390 1.735571 TCAGTTCGTCACGATGATCGA 59.264 47.619 22.88 0.00 43.74 3.59
3279 4402 2.029020 CGATGATCGATGGTGGTGGTAT 60.029 50.000 9.62 0.00 43.74 2.73
3280 4403 3.554960 CGATGATCGATGGTGGTGGTATT 60.555 47.826 9.62 0.00 43.74 1.89
3281 4404 3.469008 TGATCGATGGTGGTGGTATTC 57.531 47.619 0.54 0.00 0.00 1.75
3282 4405 2.769095 TGATCGATGGTGGTGGTATTCA 59.231 45.455 0.54 0.00 0.00 2.57
3283 4406 2.979814 TCGATGGTGGTGGTATTCAG 57.020 50.000 0.00 0.00 0.00 3.02
3284 4407 2.184533 TCGATGGTGGTGGTATTCAGT 58.815 47.619 0.00 0.00 0.00 3.41
3291 4414 3.443681 GGTGGTGGTATTCAGTTTGATGG 59.556 47.826 0.00 0.00 0.00 3.51
3297 4420 4.398988 TGGTATTCAGTTTGATGGTGATGC 59.601 41.667 0.00 0.00 0.00 3.91
3308 4431 4.512484 TGATGGTGATGCAATAAGAACGA 58.488 39.130 0.00 0.00 0.00 3.85
3324 4447 4.493547 AGAACGAAGAAGAGAAGATGCAG 58.506 43.478 0.00 0.00 0.00 4.41
3325 4448 3.244033 ACGAAGAAGAGAAGATGCAGG 57.756 47.619 0.00 0.00 0.00 4.85
3326 4449 1.932511 CGAAGAAGAGAAGATGCAGGC 59.067 52.381 0.00 0.00 0.00 4.85
3327 4450 2.418471 CGAAGAAGAGAAGATGCAGGCT 60.418 50.000 0.00 0.00 0.00 4.58
3328 4451 2.985957 AGAAGAGAAGATGCAGGCTC 57.014 50.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.490355 CAAATTAGTGCCTTGAATTTCAGTTTC 58.510 33.333 0.00 0.00 31.93 2.78
1 2 7.041848 GCAAATTAGTGCCTTGAATTTCAGTTT 60.042 33.333 0.00 0.00 38.66 2.66
2 3 6.424812 GCAAATTAGTGCCTTGAATTTCAGTT 59.575 34.615 0.00 0.00 38.66 3.16
3 4 5.928264 GCAAATTAGTGCCTTGAATTTCAGT 59.072 36.000 0.00 0.00 38.66 3.41
4 5 5.927689 TGCAAATTAGTGCCTTGAATTTCAG 59.072 36.000 0.00 0.00 44.26 3.02
5 6 5.851720 TGCAAATTAGTGCCTTGAATTTCA 58.148 33.333 0.00 0.00 44.26 2.69
6 7 6.783892 TTGCAAATTAGTGCCTTGAATTTC 57.216 33.333 0.00 0.00 44.26 2.17
7 8 6.767423 ACTTTGCAAATTAGTGCCTTGAATTT 59.233 30.769 13.23 0.00 44.26 1.82
8 9 6.290605 ACTTTGCAAATTAGTGCCTTGAATT 58.709 32.000 13.23 0.00 44.26 2.17
9 10 5.857268 ACTTTGCAAATTAGTGCCTTGAAT 58.143 33.333 13.23 0.00 44.26 2.57
10 11 5.275067 ACTTTGCAAATTAGTGCCTTGAA 57.725 34.783 13.23 0.00 44.26 2.69
11 12 4.935352 ACTTTGCAAATTAGTGCCTTGA 57.065 36.364 13.23 0.00 44.26 3.02
12 13 8.028938 AGTATTACTTTGCAAATTAGTGCCTTG 58.971 33.333 13.23 0.00 44.26 3.61
13 14 8.122472 AGTATTACTTTGCAAATTAGTGCCTT 57.878 30.769 13.23 0.00 44.26 4.35
14 15 7.148069 GGAGTATTACTTTGCAAATTAGTGCCT 60.148 37.037 13.23 8.62 44.26 4.75
15 16 6.972901 GGAGTATTACTTTGCAAATTAGTGCC 59.027 38.462 13.23 8.11 44.26 5.01
16 17 6.972901 GGGAGTATTACTTTGCAAATTAGTGC 59.027 38.462 13.23 11.56 45.15 4.40
17 18 8.281212 AGGGAGTATTACTTTGCAAATTAGTG 57.719 34.615 13.23 2.92 0.00 2.74
18 19 8.329502 AGAGGGAGTATTACTTTGCAAATTAGT 58.670 33.333 13.23 9.91 0.00 2.24
19 20 8.616076 CAGAGGGAGTATTACTTTGCAAATTAG 58.384 37.037 13.23 3.45 0.00 1.73
20 21 8.107095 ACAGAGGGAGTATTACTTTGCAAATTA 58.893 33.333 13.23 8.84 0.00 1.40
21 22 6.948309 ACAGAGGGAGTATTACTTTGCAAATT 59.052 34.615 13.23 9.97 0.00 1.82
22 23 6.485171 ACAGAGGGAGTATTACTTTGCAAAT 58.515 36.000 13.23 5.89 0.00 2.32
23 24 5.876357 ACAGAGGGAGTATTACTTTGCAAA 58.124 37.500 12.14 12.14 0.00 3.68
24 25 5.488341 GACAGAGGGAGTATTACTTTGCAA 58.512 41.667 0.00 0.00 0.00 4.08
25 26 4.081087 GGACAGAGGGAGTATTACTTTGCA 60.081 45.833 0.00 0.00 0.00 4.08
26 27 4.443621 GGACAGAGGGAGTATTACTTTGC 58.556 47.826 0.00 0.00 0.00 3.68
27 28 4.469945 TGGGACAGAGGGAGTATTACTTTG 59.530 45.833 0.00 0.00 0.00 2.77
28 29 4.695606 TGGGACAGAGGGAGTATTACTTT 58.304 43.478 0.00 0.00 0.00 2.66
29 30 4.348020 TGGGACAGAGGGAGTATTACTT 57.652 45.455 0.00 0.00 0.00 2.24
45 46 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
46 47 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
47 48 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
53 54 8.870879 GCTCTAGTGTCAAAAACGTTCTTATAT 58.129 33.333 0.00 0.00 0.00 0.86
54 55 7.868922 TGCTCTAGTGTCAAAAACGTTCTTATA 59.131 33.333 0.00 0.00 0.00 0.98
55 56 6.704493 TGCTCTAGTGTCAAAAACGTTCTTAT 59.296 34.615 0.00 0.00 0.00 1.73
56 57 6.044046 TGCTCTAGTGTCAAAAACGTTCTTA 58.956 36.000 0.00 0.00 0.00 2.10
57 58 4.873827 TGCTCTAGTGTCAAAAACGTTCTT 59.126 37.500 0.00 0.00 0.00 2.52
58 59 4.439057 TGCTCTAGTGTCAAAAACGTTCT 58.561 39.130 0.00 0.00 0.00 3.01
59 60 4.270325 ACTGCTCTAGTGTCAAAAACGTTC 59.730 41.667 0.00 0.00 38.49 3.95
60 61 4.189231 ACTGCTCTAGTGTCAAAAACGTT 58.811 39.130 0.00 0.00 38.49 3.99
61 62 3.793559 ACTGCTCTAGTGTCAAAAACGT 58.206 40.909 0.00 0.00 38.49 3.99
72 73 2.544267 GCGTTTTTGACACTGCTCTAGT 59.456 45.455 0.00 0.00 41.36 2.57
73 74 2.802816 AGCGTTTTTGACACTGCTCTAG 59.197 45.455 0.00 0.00 0.00 2.43
74 75 2.833794 AGCGTTTTTGACACTGCTCTA 58.166 42.857 0.00 0.00 0.00 2.43
75 76 1.668419 AGCGTTTTTGACACTGCTCT 58.332 45.000 0.00 0.00 0.00 4.09
76 77 2.544267 ACTAGCGTTTTTGACACTGCTC 59.456 45.455 0.00 0.00 34.08 4.26
77 78 2.287915 CACTAGCGTTTTTGACACTGCT 59.712 45.455 0.00 0.00 36.51 4.24
78 79 2.031683 ACACTAGCGTTTTTGACACTGC 59.968 45.455 0.00 0.00 0.00 4.40
79 80 3.944422 ACACTAGCGTTTTTGACACTG 57.056 42.857 0.00 0.00 0.00 3.66
80 81 6.425577 TTTAACACTAGCGTTTTTGACACT 57.574 33.333 0.70 0.00 0.00 3.55
81 82 7.378047 GTTTTTAACACTAGCGTTTTTGACAC 58.622 34.615 0.70 0.00 0.00 3.67
82 83 6.248839 CGTTTTTAACACTAGCGTTTTTGACA 59.751 34.615 0.70 0.00 0.00 3.58
83 84 6.249050 ACGTTTTTAACACTAGCGTTTTTGAC 59.751 34.615 0.70 0.00 0.00 3.18
84 85 6.313252 ACGTTTTTAACACTAGCGTTTTTGA 58.687 32.000 0.70 0.00 0.00 2.69
85 86 6.543187 ACGTTTTTAACACTAGCGTTTTTG 57.457 33.333 0.70 0.00 0.00 2.44
86 87 7.022979 AGAACGTTTTTAACACTAGCGTTTTT 58.977 30.769 0.46 0.00 40.41 1.94
87 88 6.545508 AGAACGTTTTTAACACTAGCGTTTT 58.454 32.000 0.46 0.00 40.41 2.43
88 89 6.110543 AGAACGTTTTTAACACTAGCGTTT 57.889 33.333 0.46 0.00 40.41 3.60
89 90 5.723492 AGAACGTTTTTAACACTAGCGTT 57.277 34.783 0.46 1.16 42.49 4.84
90 91 5.723492 AAGAACGTTTTTAACACTAGCGT 57.277 34.783 0.46 0.00 0.00 5.07
91 92 9.962759 AATATAAGAACGTTTTTAACACTAGCG 57.037 29.630 14.41 0.00 0.00 4.26
100 101 9.044150 CCGTCCCATAATATAAGAACGTTTTTA 57.956 33.333 13.02 13.02 0.00 1.52
101 102 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
102 103 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
103 104 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
104 105 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
105 106 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
106 107 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
107 108 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
108 109 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
109 110 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
110 111 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
111 112 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
112 113 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
113 114 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
114 115 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
115 116 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
116 117 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
117 118 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
118 119 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
119 120 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
120 121 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
121 122 2.134789 TTGTACTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
122 123 4.202441 TGTATTGTACTACTCCCTCCGTC 58.798 47.826 0.00 0.00 0.00 4.79
123 124 4.240881 TGTATTGTACTACTCCCTCCGT 57.759 45.455 0.00 0.00 0.00 4.69
124 125 5.786264 ATTGTATTGTACTACTCCCTCCG 57.214 43.478 0.00 0.00 0.00 4.63
136 137 9.111613 CGGGGTACAGAAAATTATTGTATTGTA 57.888 33.333 0.00 0.00 30.79 2.41
137 138 7.612633 ACGGGGTACAGAAAATTATTGTATTGT 59.387 33.333 0.00 0.00 30.79 2.71
138 139 7.992008 ACGGGGTACAGAAAATTATTGTATTG 58.008 34.615 0.00 0.00 30.79 1.90
139 140 8.050930 AGACGGGGTACAGAAAATTATTGTATT 58.949 33.333 0.00 0.00 30.79 1.89
140 141 7.497909 CAGACGGGGTACAGAAAATTATTGTAT 59.502 37.037 0.00 0.00 30.79 2.29
162 163 7.045126 AGGATAACTTAGAGTATGTGCAGAC 57.955 40.000 0.00 0.00 0.00 3.51
166 167 6.706716 GGGAAAGGATAACTTAGAGTATGTGC 59.293 42.308 0.00 0.00 38.85 4.57
176 177 6.101296 GGATGAAGAGGGGAAAGGATAACTTA 59.899 42.308 0.00 0.00 38.85 2.24
185 186 2.843113 AGTCTGGATGAAGAGGGGAAAG 59.157 50.000 0.00 0.00 0.00 2.62
186 187 2.921221 AGTCTGGATGAAGAGGGGAAA 58.079 47.619 0.00 0.00 0.00 3.13
187 188 2.573462 CAAGTCTGGATGAAGAGGGGAA 59.427 50.000 0.00 0.00 0.00 3.97
194 195 6.564709 TGAAACATTCAAGTCTGGATGAAG 57.435 37.500 0.36 0.00 40.63 3.02
230 231 1.398390 CCCAAGACACTTCGCTAATGC 59.602 52.381 0.00 0.00 0.00 3.56
236 237 1.070786 TGGTCCCAAGACACTTCGC 59.929 57.895 0.00 0.00 45.48 4.70
238 239 1.947456 GTTGTGGTCCCAAGACACTTC 59.053 52.381 0.00 0.00 45.48 3.01
243 244 3.335579 GAGTATGTTGTGGTCCCAAGAC 58.664 50.000 0.00 0.00 42.73 3.01
250 251 2.094390 TGTAGCGGAGTATGTTGTGGTC 60.094 50.000 0.00 0.00 0.00 4.02
251 252 1.897133 TGTAGCGGAGTATGTTGTGGT 59.103 47.619 0.00 0.00 0.00 4.16
252 253 2.268298 GTGTAGCGGAGTATGTTGTGG 58.732 52.381 0.00 0.00 0.00 4.17
263 264 2.279502 CTAGCAAGCGGTGTAGCGGA 62.280 60.000 5.59 0.00 43.00 5.54
266 267 3.400007 GCTAGCAAGCGGTGTAGC 58.600 61.111 10.63 7.80 39.39 3.58
277 278 1.279496 ACTCCCACTGAATGCTAGCA 58.721 50.000 21.85 21.85 0.00 3.49
278 279 2.168521 TGTACTCCCACTGAATGCTAGC 59.831 50.000 8.10 8.10 0.00 3.42
279 280 4.437239 CTTGTACTCCCACTGAATGCTAG 58.563 47.826 0.00 0.00 0.00 3.42
280 281 3.197766 CCTTGTACTCCCACTGAATGCTA 59.802 47.826 0.00 0.00 0.00 3.49
281 282 2.026822 CCTTGTACTCCCACTGAATGCT 60.027 50.000 0.00 0.00 0.00 3.79
282 283 2.359900 CCTTGTACTCCCACTGAATGC 58.640 52.381 0.00 0.00 0.00 3.56
283 284 2.571653 TCCCTTGTACTCCCACTGAATG 59.428 50.000 0.00 0.00 0.00 2.67
285 286 2.409064 TCCCTTGTACTCCCACTGAA 57.591 50.000 0.00 0.00 0.00 3.02
287 288 1.978580 ACTTCCCTTGTACTCCCACTG 59.021 52.381 0.00 0.00 0.00 3.66
288 289 2.417719 ACTTCCCTTGTACTCCCACT 57.582 50.000 0.00 0.00 0.00 4.00
303 307 3.809832 AGACATGCACAACACAGTACTTC 59.190 43.478 0.00 0.00 0.00 3.01
352 358 1.680314 CTTCTTCAAGCTGGGGCCC 60.680 63.158 18.17 18.17 39.73 5.80
355 361 3.425162 AACTACTTCTTCAAGCTGGGG 57.575 47.619 0.00 0.00 32.09 4.96
359 365 7.057264 AGAAAAGGAAACTACTTCTTCAAGCT 58.943 34.615 0.00 0.00 42.68 3.74
360 366 7.265647 AGAAAAGGAAACTACTTCTTCAAGC 57.734 36.000 0.00 0.00 42.68 4.01
361 367 9.549078 ACTAGAAAAGGAAACTACTTCTTCAAG 57.451 33.333 0.00 0.00 42.68 3.02
362 368 9.326413 CACTAGAAAAGGAAACTACTTCTTCAA 57.674 33.333 0.00 0.00 42.68 2.69
364 370 7.658167 AGCACTAGAAAAGGAAACTACTTCTTC 59.342 37.037 0.00 0.00 42.68 2.87
365 371 7.510407 AGCACTAGAAAAGGAAACTACTTCTT 58.490 34.615 0.00 0.00 42.68 2.52
366 372 7.068686 AGCACTAGAAAAGGAAACTACTTCT 57.931 36.000 0.00 0.00 42.68 2.85
367 373 7.731882 AAGCACTAGAAAAGGAAACTACTTC 57.268 36.000 0.00 0.00 42.68 3.01
368 374 9.794719 AATAAGCACTAGAAAAGGAAACTACTT 57.205 29.630 0.00 0.00 42.68 2.24
369 375 9.794719 AAATAAGCACTAGAAAAGGAAACTACT 57.205 29.630 0.00 0.00 42.68 2.57
371 377 9.227777 GGAAATAAGCACTAGAAAAGGAAACTA 57.772 33.333 0.00 0.00 42.68 2.24
376 1100 7.038302 TGAGAGGAAATAAGCACTAGAAAAGGA 60.038 37.037 0.00 0.00 0.00 3.36
380 1104 7.936847 TGTTTGAGAGGAAATAAGCACTAGAAA 59.063 33.333 0.00 0.00 0.00 2.52
386 1110 6.599638 ACCTATGTTTGAGAGGAAATAAGCAC 59.400 38.462 0.00 0.00 36.44 4.40
391 1115 9.753674 ATTTGAACCTATGTTTGAGAGGAAATA 57.246 29.630 0.00 0.00 36.44 1.40
423 1148 8.490311 AGGGGAACAGAAAATTATTTTGTTTCA 58.510 29.630 7.72 0.00 33.72 2.69
430 1155 8.670521 ATGAGAAGGGGAACAGAAAATTATTT 57.329 30.769 0.00 0.00 0.00 1.40
449 1174 9.745018 AAAAAGATTCATGACCTAGAATGAGAA 57.255 29.630 0.00 0.00 34.79 2.87
478 1203 3.070159 CCCTTGATCTAGATCCTCGCAAA 59.930 47.826 26.33 13.71 37.02 3.68
481 1206 2.230266 GACCCTTGATCTAGATCCTCGC 59.770 54.545 26.33 10.04 37.02 5.03
482 1207 3.505680 CAGACCCTTGATCTAGATCCTCG 59.494 52.174 26.33 15.47 37.02 4.63
483 1208 3.831911 CCAGACCCTTGATCTAGATCCTC 59.168 52.174 26.33 14.09 37.02 3.71
484 1209 3.208692 ACCAGACCCTTGATCTAGATCCT 59.791 47.826 26.33 14.03 37.02 3.24
499 1228 2.640316 AGAACACTTGGAACCAGACC 57.360 50.000 0.00 0.00 0.00 3.85
500 1229 3.071167 ACCTAGAACACTTGGAACCAGAC 59.929 47.826 0.00 0.00 32.49 3.51
509 1238 9.226606 TGAATACCATTTTACCTAGAACACTTG 57.773 33.333 0.00 0.00 0.00 3.16
520 1249 9.423061 GCCAATGATTATGAATACCATTTTACC 57.577 33.333 0.00 0.00 36.71 2.85
578 1307 7.998964 CCAATACCAATCCCTTATGTTAGAACT 59.001 37.037 0.00 0.00 0.00 3.01
579 1308 7.230712 CCCAATACCAATCCCTTATGTTAGAAC 59.769 40.741 0.00 0.00 0.00 3.01
580 1309 7.129660 TCCCAATACCAATCCCTTATGTTAGAA 59.870 37.037 0.00 0.00 0.00 2.10
581 1310 6.621931 TCCCAATACCAATCCCTTATGTTAGA 59.378 38.462 0.00 0.00 0.00 2.10
582 1311 6.848069 TCCCAATACCAATCCCTTATGTTAG 58.152 40.000 0.00 0.00 0.00 2.34
593 1322 8.116026 ACCCATATTCTAATCCCAATACCAATC 58.884 37.037 0.00 0.00 0.00 2.67
604 1333 8.135382 TCTAGCACTTACCCATATTCTAATCC 57.865 38.462 0.00 0.00 0.00 3.01
633 1362 6.458751 CGATTTCCATGGTCACCATTTCTAAG 60.459 42.308 6.58 0.00 42.23 2.18
634 1363 5.356751 CGATTTCCATGGTCACCATTTCTAA 59.643 40.000 6.58 0.00 42.23 2.10
636 1365 3.696051 CGATTTCCATGGTCACCATTTCT 59.304 43.478 6.58 0.00 42.23 2.52
637 1366 3.694072 TCGATTTCCATGGTCACCATTTC 59.306 43.478 6.58 0.00 42.23 2.17
638 1367 3.443681 GTCGATTTCCATGGTCACCATTT 59.556 43.478 6.58 0.00 42.23 2.32
652 1384 9.834628 TGTAAAGTCCAATAAATTGTCGATTTC 57.165 29.630 1.05 0.00 38.80 2.17
657 1389 7.581476 ACACTGTAAAGTCCAATAAATTGTCG 58.419 34.615 2.25 0.00 36.06 4.35
658 1390 7.744715 CGACACTGTAAAGTCCAATAAATTGTC 59.255 37.037 2.25 0.00 36.06 3.18
663 1395 7.972832 ATTCGACACTGTAAAGTCCAATAAA 57.027 32.000 0.00 0.00 0.00 1.40
671 1403 5.045215 TCACGAAATTCGACACTGTAAAGT 58.955 37.500 22.92 0.00 43.74 2.66
674 1406 5.970140 TTTCACGAAATTCGACACTGTAA 57.030 34.783 22.92 6.99 43.74 2.41
677 1409 5.525536 GTTTTTCACGAAATTCGACACTG 57.474 39.130 22.92 9.76 43.74 3.66
691 1423 7.748683 TCAGAATACATACATTGCGTTTTTCAC 59.251 33.333 0.00 0.00 0.00 3.18
692 1424 7.811653 TCAGAATACATACATTGCGTTTTTCA 58.188 30.769 0.00 0.00 0.00 2.69
693 1425 8.667987 TTCAGAATACATACATTGCGTTTTTC 57.332 30.769 0.00 0.00 0.00 2.29
696 1428 7.984391 TCATTCAGAATACATACATTGCGTTT 58.016 30.769 0.00 0.00 0.00 3.60
697 1429 7.552458 TCATTCAGAATACATACATTGCGTT 57.448 32.000 0.00 0.00 0.00 4.84
698 1430 7.734924 ATCATTCAGAATACATACATTGCGT 57.265 32.000 0.00 0.00 0.00 5.24
699 1431 9.533983 GTTATCATTCAGAATACATACATTGCG 57.466 33.333 0.00 0.00 0.00 4.85
711 1443 7.173907 CGGCATTTCCTAGTTATCATTCAGAAT 59.826 37.037 0.00 0.00 0.00 2.40
741 1473 1.663445 CGTATCACCTACAGCGCTAGC 60.663 57.143 10.99 4.06 45.58 3.42
747 1479 2.594541 GCTGCGTATCACCTACAGC 58.405 57.895 0.00 0.00 45.95 4.40
753 1485 3.682858 TGAAAAGTTAGCTGCGTATCACC 59.317 43.478 0.00 0.00 0.00 4.02
754 1486 4.921470 TGAAAAGTTAGCTGCGTATCAC 57.079 40.909 0.00 0.00 0.00 3.06
757 1489 3.689161 TGCATGAAAAGTTAGCTGCGTAT 59.311 39.130 0.00 0.00 32.42 3.06
760 1492 2.160219 TCTGCATGAAAAGTTAGCTGCG 59.840 45.455 0.00 0.00 32.42 5.18
761 1493 3.190118 AGTCTGCATGAAAAGTTAGCTGC 59.810 43.478 0.00 0.00 0.00 5.25
769 1501 7.333921 GGGAGATATCATAGTCTGCATGAAAAG 59.666 40.741 5.32 0.00 36.08 2.27
770 1502 7.164122 GGGAGATATCATAGTCTGCATGAAAA 58.836 38.462 5.32 0.00 36.08 2.29
772 1504 5.781818 TGGGAGATATCATAGTCTGCATGAA 59.218 40.000 5.32 0.00 36.08 2.57
775 1507 4.715792 CCTGGGAGATATCATAGTCTGCAT 59.284 45.833 5.32 0.00 34.86 3.96
782 1514 4.715792 AGCATGTCCTGGGAGATATCATAG 59.284 45.833 5.32 0.00 0.00 2.23
792 1527 2.905415 AAAATGAGCATGTCCTGGGA 57.095 45.000 0.00 0.00 0.00 4.37
794 1529 5.647658 TGTAGTAAAAATGAGCATGTCCTGG 59.352 40.000 0.00 0.00 0.00 4.45
795 1530 6.546395 GTGTAGTAAAAATGAGCATGTCCTG 58.454 40.000 0.00 0.00 0.00 3.86
813 1549 9.431887 AGTGAACAAAAATACATATCGTGTAGT 57.568 29.630 0.00 0.00 45.94 2.73
825 1561 8.699749 GCAAAGATAACCAGTGAACAAAAATAC 58.300 33.333 0.00 0.00 0.00 1.89
837 1573 6.942576 AGTCAACATTAGCAAAGATAACCAGT 59.057 34.615 0.00 0.00 0.00 4.00
886 1622 2.422479 TCTAAGTTCAGGATCCACGACG 59.578 50.000 15.82 0.00 0.00 5.12
889 1625 4.082190 TCACTTCTAAGTTCAGGATCCACG 60.082 45.833 15.82 4.51 37.08 4.94
890 1626 5.172205 GTCACTTCTAAGTTCAGGATCCAC 58.828 45.833 15.82 3.23 37.08 4.02
892 1628 5.046950 ACTGTCACTTCTAAGTTCAGGATCC 60.047 44.000 19.71 2.48 40.04 3.36
906 1642 6.701841 TGTCTTAATCTTGACACTGTCACTTC 59.298 38.462 11.58 0.00 42.60 3.01
907 1643 6.582636 TGTCTTAATCTTGACACTGTCACTT 58.417 36.000 11.58 8.32 42.60 3.16
941 1678 9.813826 CATATTGTCCCTCTTTCCCTAATTTAT 57.186 33.333 0.00 0.00 0.00 1.40
964 1701 1.722034 GACTCTGGGGAGGATGCATA 58.278 55.000 0.00 0.00 43.46 3.14
973 1710 1.307866 GGGGAATGGACTCTGGGGA 60.308 63.158 0.00 0.00 0.00 4.81
978 1715 2.850833 TCAAGATGGGGAATGGACTCT 58.149 47.619 0.00 0.00 0.00 3.24
995 1732 3.696051 GCTGTAAGAGCCATCCATTTCAA 59.304 43.478 0.00 0.00 42.54 2.69
1013 1750 2.551721 CCTGACTGTGGAGATTTGCTGT 60.552 50.000 0.00 0.00 0.00 4.40
1098 1835 7.627300 GCTGGAAAAGAAAATCAGTACCATCTC 60.627 40.741 0.00 0.00 0.00 2.75
1169 1906 9.552114 CTTCATCTTTTGTCTTATCATCACAAC 57.448 33.333 0.00 0.00 29.74 3.32
1184 1921 2.812658 AGGGGAAGCCTTCATCTTTTG 58.187 47.619 6.80 0.00 0.00 2.44
1185 1922 4.540715 CATAGGGGAAGCCTTCATCTTTT 58.459 43.478 6.80 0.00 0.00 2.27
1191 1928 0.998928 TTGCATAGGGGAAGCCTTCA 59.001 50.000 6.80 0.00 0.00 3.02
1192 1929 1.685148 CTTGCATAGGGGAAGCCTTC 58.315 55.000 0.00 0.00 38.16 3.46
1194 1931 1.925888 CCTTGCATAGGGGAAGCCT 59.074 57.895 6.96 0.00 43.04 4.58
1196 1933 1.829970 GGCCTTGCATAGGGGAAGC 60.830 63.158 14.32 0.00 44.91 3.86
1197 1934 0.033208 TTGGCCTTGCATAGGGGAAG 60.033 55.000 3.32 0.00 44.91 3.46
1200 1937 0.754472 CAATTGGCCTTGCATAGGGG 59.246 55.000 3.32 4.60 44.91 4.79
1216 1953 1.742761 CCGGACATCTTGCAGACAAT 58.257 50.000 0.00 0.00 34.61 2.71
1218 1955 1.375908 GCCGGACATCTTGCAGACA 60.376 57.895 5.05 0.00 0.00 3.41
1224 1961 1.683790 GAACGTCGCCGGACATCTTG 61.684 60.000 5.05 0.00 43.61 3.02
1236 1973 1.413767 CTGGAGCAATCCGAACGTCG 61.414 60.000 0.00 0.00 40.07 5.12
1239 1976 0.391130 TTCCTGGAGCAATCCGAACG 60.391 55.000 0.00 0.00 0.00 3.95
1275 2012 2.614057 GCTTTGATACAGCGGCATAGTT 59.386 45.455 1.45 0.00 0.00 2.24
1277 2014 2.957576 GCTTTGATACAGCGGCATAG 57.042 50.000 1.45 0.00 0.00 2.23
1284 2021 0.026803 CTTCCGCGCTTTGATACAGC 59.973 55.000 5.56 0.00 0.00 4.40
1299 2036 2.884207 CTAACGCGTCGCCCTTCC 60.884 66.667 14.44 0.00 0.00 3.46
1305 2042 1.663702 ATATGGCCTAACGCGTCGC 60.664 57.895 14.44 14.97 38.94 5.19
1485 2222 1.188219 ACAGTGGGATCAGCACGTCT 61.188 55.000 0.00 0.00 0.00 4.18
1570 2307 8.922058 TGTAGAATCGGTTTATACTTCTTGAC 57.078 34.615 6.37 0.00 33.94 3.18
1595 2332 1.740664 TCGTAGCGCGACAGTCTCT 60.741 57.895 20.68 0.00 45.68 3.10
1636 2373 2.421424 GGTGGAAGCAGTGAACATCATC 59.579 50.000 0.00 0.00 0.00 2.92
1683 2420 1.629043 GGCGTATGATCAGGTCCCTA 58.371 55.000 0.09 0.00 0.00 3.53
1709 2446 2.224354 TGTCCCTTCGGGTTTCTTGTAC 60.224 50.000 0.00 0.00 44.74 2.90
1722 2459 0.035056 CCACCATGGAGTGTCCCTTC 60.035 60.000 21.47 0.00 40.96 3.46
1818 2555 0.543277 TGATCAGCATCCTCGGCTTT 59.457 50.000 0.00 0.00 40.23 3.51
2143 2880 1.985116 GGCTGTTCTCCTCTCCGGT 60.985 63.158 0.00 0.00 0.00 5.28
2283 3020 2.032620 CGTAGGAGTGTAGGCCTGAAT 58.967 52.381 17.99 0.00 35.73 2.57
2360 3103 1.457303 GCATGCGCTCTATTTACCTCG 59.543 52.381 9.73 0.00 34.30 4.63
2603 3391 1.487976 TGAGAGTTGAGGGCCATCATC 59.512 52.381 22.68 20.38 0.00 2.92
2626 3414 3.651206 AGATGAATAGATCAGTGCTGCG 58.349 45.455 0.00 0.00 42.53 5.18
2664 3455 9.762062 CAATTTGCAAATACGTACTACATTACA 57.238 29.630 24.35 0.00 0.00 2.41
2665 3456 8.730427 GCAATTTGCAAATACGTACTACATTAC 58.270 33.333 24.35 0.00 44.26 1.89
2666 3457 8.829514 GCAATTTGCAAATACGTACTACATTA 57.170 30.769 24.35 0.00 44.26 1.90
2667 3458 7.734538 GCAATTTGCAAATACGTACTACATT 57.265 32.000 24.35 2.87 44.26 2.71
2701 3493 0.168788 CGACCATGGCATGAACACAC 59.831 55.000 28.43 11.13 0.00 3.82
2731 3523 3.164269 CTCCCATCCCTCCCACCG 61.164 72.222 0.00 0.00 0.00 4.94
3126 4236 3.850173 AGGAGGGGAAGCTGTACATAAAA 59.150 43.478 0.00 0.00 0.00 1.52
3213 4323 0.528901 CGTTTGTGTCAGGTCGTCCA 60.529 55.000 0.51 0.00 35.89 4.02
3234 4344 0.575390 GAACTGACGACGTGGTGTTG 59.425 55.000 8.32 0.30 38.02 3.33
3250 4360 1.781429 CCATCGATCATCGTGACGAAC 59.219 52.381 13.14 3.37 41.35 3.95
3251 4361 1.404035 ACCATCGATCATCGTGACGAA 59.596 47.619 13.14 0.00 41.35 3.85
3252 4362 1.021968 ACCATCGATCATCGTGACGA 58.978 50.000 11.14 11.14 41.35 4.20
3253 4363 1.123655 CACCATCGATCATCGTGACG 58.876 55.000 7.00 0.00 41.35 4.35
3255 4365 1.111277 ACCACCATCGATCATCGTGA 58.889 50.000 7.00 0.00 41.35 4.35
3256 4366 1.211743 CACCACCATCGATCATCGTG 58.788 55.000 7.00 4.89 41.35 4.35
3257 4367 0.104855 CCACCACCATCGATCATCGT 59.895 55.000 7.00 0.00 41.35 3.73
3258 4368 0.104855 ACCACCACCATCGATCATCG 59.895 55.000 0.00 0.00 42.10 3.84
3259 4369 3.685139 ATACCACCACCATCGATCATC 57.315 47.619 0.00 0.00 0.00 2.92
3260 4370 3.390967 TGAATACCACCACCATCGATCAT 59.609 43.478 0.00 0.00 0.00 2.45
3261 4371 2.769095 TGAATACCACCACCATCGATCA 59.231 45.455 0.00 0.00 0.00 2.92
3263 4373 2.771943 ACTGAATACCACCACCATCGAT 59.228 45.455 0.00 0.00 0.00 3.59
3264 4374 2.184533 ACTGAATACCACCACCATCGA 58.815 47.619 0.00 0.00 0.00 3.59
3267 4390 4.380843 TCAAACTGAATACCACCACCAT 57.619 40.909 0.00 0.00 0.00 3.55
3279 4402 6.433716 TCTTATTGCATCACCATCAAACTGAA 59.566 34.615 0.00 0.00 0.00 3.02
3280 4403 5.945191 TCTTATTGCATCACCATCAAACTGA 59.055 36.000 0.00 0.00 0.00 3.41
3281 4404 6.198650 TCTTATTGCATCACCATCAAACTG 57.801 37.500 0.00 0.00 0.00 3.16
3282 4405 6.623549 CGTTCTTATTGCATCACCATCAAACT 60.624 38.462 0.00 0.00 0.00 2.66
3283 4406 5.512788 CGTTCTTATTGCATCACCATCAAAC 59.487 40.000 0.00 0.00 0.00 2.93
3284 4407 5.414144 TCGTTCTTATTGCATCACCATCAAA 59.586 36.000 0.00 0.00 0.00 2.69
3291 4414 6.311445 TCTCTTCTTCGTTCTTATTGCATCAC 59.689 38.462 0.00 0.00 0.00 3.06
3297 4420 7.063898 TGCATCTTCTCTTCTTCGTTCTTATTG 59.936 37.037 0.00 0.00 0.00 1.90
3308 4431 3.264998 GAGCCTGCATCTTCTCTTCTT 57.735 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.