>input_sequence_54343
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--------------------------------------------------------ATGGATGGCTCTTACAGCAAATCT
CCACAGTCAGGTCAGATAACAGCCATATACAAAATATTAAAGATTTGGCAACAAATTTTCCTTATGCTAACATGGAGATG
GTACTGATTTTCTTTTCCAGCAACAGTTGCAGAGATTGAAGTTCCAAAGCCTAAGGGTAGTATCAGTTGTGATGATAAGA
CAAAAGATGAAGGCTTCCCCTATGCAAGGCCAATTGTCTGCAAGATGTCCGGCGACGTTCGGATTGCTCCAGGAAGCTCA
TCAGTCATTCTAACTATGCCGCTGTATCAAAGCGCGGAAGGGCGACGCGTTAGGCCATATGCTCGCCATGATGATTCATT
GCCGCCTCTTGTGAGAGAAGTGGCCATTAAAACAGTTGCAAATGGAAGTGACGCTCCTGAATGCAGCGTCAGACACGGCG
ACATACCGGCAGTGGTCTTCTCGGTCGGCGGCTACACCGGAAACTTCTTCCACGACATGTCAGACGTGCTGATCCCACTG
TACCTGACTTCATTCCAGTTCAAAGGGAGGGTGCAGTTCTTCGTCACCGACTACAAGCAGTGGTGGGTCAAGAAGTATAA
ACCGATTCTACAGAGACTGTCGCGCTACGACATTGTCGATTTCGACTCGAACGATGATGTTCACTGCTTCCACCATGTGA
TCCTTGGACTGGTGAGGGATAGGGACCTGATCATACGCCGGCATCGTACAAGAAACCCGAAGGGACACTCCATGGTGGGA
TTCAAAAGACTCCTGCGCCGCGCCTACGGTCTCCGAAGGGACAGGCCTCTGGCCCTCGGCGAAAACCCCGGCAAAAAGCC
GAGGATGCTGATCATATCTCGCCGAGGGACACGGAGGCTCCTGAACCTGCACCAGGTGGAGGCTATGGCGACATTGGTAG
GATTCGACGTAACGGTCTCCGAGGCCAGGGACAACGGCATCAAGAGGTTCGCAGAGACGGTGAACTCTTGCGACGTGCTG
GTGGCGGTGCACGGTGCTGGCCTGACCAACCAGGTGTTCCTCCCGGCGCGGGCGGTGGTGGTTCAGATCGTGCCGTGGGG
CGGAATGGAGTGGATGGCCACCAACTTCTACGGTGAGCCGGCGCGAGGCATGGGCCTGCGGTACCTCGAGTACCGCATCA
CCGGAGAGGAGAACAGCCTAGCCGGGCGATACCCGAGGGACCATGCCGTGTTCAGGGACCCCATGGCCATCCATGCACAG
GGGTGGAAGGCGCTGGCGGAGGTGGTGATGACGCAGGACGTGAGCCTCGATCTTGACAGATTCAGGCCTACACTCCTACG
TGCCCTGGACCTTCTTCAAGATT--AA-----------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>chr3D_1_TraesCS3D01G024800
GAAACTGAAATTCAAGGCACTAATTTGCAAAGTAATACTCCCTCTGTCCCATAATATAAGAACGTTTTTGACACTAGAGC
AGTGTCAAAAACGCTAGTGTTAAAAACGTTCTTATATTATGGGACGGAGGGAGTAGTACAATACAATAATTTTCTGTACC
CCGTCTGCACATACTCTAAGTTATCCTTTCCCCTCTTCATCCAGACTTGAATGTTTCAAAATTCAGAGTGGCATTAGCGA
AGTGTCTTGGGACCACAACATACTCCGCTACACCGCTTGCTAGCATTCA---GTGGGAGTACAAGGGAAGTACTGTGTTG
TGCATGTCTAAGGCTGTA--TTGGGATTTTTTGATCCGGGCCCCAGCTTGAAGAAGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGTTTCCTTTTCTAGTGCTTATTTC
CTCTCAAACATAGG-TTCAAATTTGATTGAAACAAAATAATTTTCTGTTCCCCTTCTCATTCTAGGTCATGAATCTTTTT
TTTTTGCGA----GGATCTAGATCAAGGGTCTGGTTCCAAGTGTTCTAGGTAAAATGGTATTCATAATCATTGGCTAGTG
GTAAATTAATATAGTTGGCTCTTCGTAGTTCTAACATAAGGGATTGGTATTGGGATTAGAATATGGGTAAGTGCTAGAAC
ACTTAGAA---ATGGTGACCATGGAAATCGACAATTTATTGGACTTTACAGTGTCGAATTTCGTGAAAAACGCAATGTAT
GTATTCTGAATGATAACTAGGAAATGCCGTATGCTAGCGCTGTAGGTGATACGCAGCTAACTTTTCATGCAGAC---TAT
GATATCTCCC-AGGACATGCTCATTTTTACTACACGATATGTATTTTTGTTCACTGGTTATCTTTGCTAATGTTGACTGT
TGTTTACTGTTCAGTGTTGCCCGTCGTGGATCCTGAACTTAGAAGTGACAGTGTCAAGATTAAGACATA-TCAGAAAATA
AATTAGGGAAAGAGGGACAATATGCATCCTCCCCAGAGTCCATTCCCCATCTTGAAATGGATGGCTCTTACAGCAAATCT
CCACAGTCAGGTCAGATAACAGCCATATACAAAATATTAAAGATTTGGCAACAAATTTTCCTTATGCTAACATGGAGATG
GTACTGATTTTCTTTTCCAGCAACAGTTGCAGAGATTGAAGTTCCAAAGCCTAAGGGTAGTATCAGTTGTGATGATAAGA
CAAAAGATGAAGGCTTCCCCTATGCAAGGCCAATTGTCTGCAAGATGTCCGGCGACGTTCGGATTGCTCCAGGAAGCTCA
TCAGTCATTCTAACTATGCCGCTGTATCAAAGCGCGGAAGGGCGACGCGTTAGGCCATATGCTCGCCATGATGATTCATT
GCCGCCTCTTGTGAGAGAAGTGGCCATTAAAACAGTTGCAAATGGAAGTGACGCTCCTGAATGCAGCGTCAGACACGGCG
ACATACCGGCAGTGGTCTTCTCGGTCGGCGGCTACACCGGAAACTTCTTCCACGACATGTCAGACGTGCTGATCCCACTG
TACCTGACTTCATTCCAGTTCAAAGGGAGGGTGCAGTTCTTCGTCACCGACTACAAGCAGTGGTGGGTCAAGAAGTATAA
ACCGATTCTACAGAGACTGTCGCGCTACGACATTGTCGATTTCGACTCGAACGATGATGTTCACTGCTTCCACCATGTGA
TCCTTGGACTGGTGAGGGATAGGGACCTGATCATACGCCGGCATCGTACAAGAAACCCGAAGGGACACTCCATGGTGGGA
TTCAAAAGACTCCTGCGCCGCGCCTACGGTCTCCGAAGGGACAGGCCTCTGGCCCTCGGCGAAAACCCCGGCAAAAAGCC
GAGGATGCTGATCATATCTCGCCGAGGGACACGGAGGCTCCTGAACCTGCACCAGGTGGAGGCTATGGCGACATTGGTAG
GATTCGACGTAACGGTCTCCGAGGCCAGGGACAACGGCATCAAGAGGTTCGCAGAGACGGTGAACTCTTGCGACGTGCTG
GTGGCGGTGCACGGTGCTGGCCTGACCAACCAGGTGTTCCTCCCGGCGCGGGCGGTGGTGGTTCAGATCGTGCCGTGGGG
CGGAATGGAGTGGATGGCCACCAACTTCTACGGTGAGCCGGCGCGAGGCATGGGCCTGCGGTACCTCGAGTACCGCATCA
CCGGAGAGGAGAACAGCCTAGCCGGGCGATACCCGAGGGACCATGCCGTGTTCAGGGACCCCATGGCCATCCATGCACAG
GGGTGGAAGGCGCTGGCGGAGGTGGTGATGACGCAGGACGTGAGCCTCGATCTTGACAGATTCAGGCCTACACTCCTACG
TGCCCTGGACCTTCTTCAAGATT--AAGTTCATGTATCC--TTCTTGA--TTCTTTTTCTTCCGAGGTAAATAGAGCGCA
TGCATGCATGTATTGGACAGTTTTGTATAGACTGGA------------------------TTACTGT------GTTCATA
GTAATGGAAATGTT--------------ACACGAAATGGAATTGAATAAACCTTTGTTAGGCCATCATGCAGTAATGATT
CTCTCACTGCATG-CCATCTGTCTCAATTCCTCCAACGAATCACTAGAAAGCCAGAGAATTTTATTACTCTAGTTCCCAA
ACATATCTCGTGAGATCATCATCAGTACTAGATGATGGCCCTCAACTCTCAGACGCAGCACTGATCTATTCATCTCTCTT
ATG---ACCTCTTATGTAATGTAGTAC-GTATTTGCAAATTGCAAAAGCTATGTGTGTTCATGCCATGGTCGGTGGCGGT
GGCGGTGGGAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGATGGGAGTGGCGGGAGG---------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGGCAGTGGGGGTGGCAGGCGGGGCAATTGGCCTGGCACTCTTGCTGCGTCTTGAAGCACTTGGGGTA
GGGGAACAGGAACGCGCAGCAGCCGCACTCCTCGTAGAGCTTGTCGTCCAGCTTGCACTCGCGGTGTATGCAGAATTTTA
TGTACAGCTTCCCCTCCTCCATCGCCACCGTCTTGTTCCCGGACACCACCGGCGCCGGCGCCCTCGTCCTCCCAGCTGCC
TCTGGACGACCTGACACAAACGACAACACCACGTCGTCAGTTCGTCACGATGAT-------------CGATGGTGGTGGT
ATTCAGTTTGATGGTGATGCAATAAGAACGAAGAAGAGAAGATGCAGGCTC
>chr3A_142
--------------------------------------------------------------------------------
-------------------------------------------------------------TACAATAATTTTCTGTACC
CCTTCTTCACATACTC-AAGTTATCACCTCCCCTTTTCAGCCAGACTTGAATGTTTCAAAATTCAGAGTGACATTACCCA
AGTTTCTTGGAG-CACAACATACACCACTACACAGCTGCTGGTTAGTATTCGGTGGGAGTACAAGGAAAGTACTGTGTTG
TGCATGTCTAAGTCTAAGGTTTGGGATTTTGTGATCCTGGGCCCCAGCTTGCAGCCACATAATTGATAGGTCCCTCAATT
ATGCATGCATTGGCTGTTATGACAACATAGGGAATTATTGTGGAGTCATTGTACTGAATTTTAGTCGTTCTAGAATGCTA
GCACTGTTTTCAGATTCTGATTGAGATCTGTAAGGACCTTGGATTTCAGCCATTTGATTGCCTTCCTAATTCTTGTTGCC
TCCTGACACTACTTTGAACAGAAACAGAATAACTTTATATTCCCCTCGCCATACTCTGGGTTATGAGTCTGGTTCTAATT
ATTCTAGATAAAATGGAATTGATAAACATTGGTCAATGAGAAACTAAATAGTGTGCTTGTCAAAAACATATAAATAATCA
CAATCTGGGATGTTGAGATTAGTTGGCAAAAACCACTAGAAGCATAGAACATATTACACAGTACACACTGACCATCAAAA
TGTACAAATTCATTGGTCTCTCTATTTATGATTCTCAAAGAAATGTCTCTATATGTGTATTCTCACTTTCTCAGTGACAA
TTATGAAATTTATTTGCCAACATTATCTGCGTGCATTGGCTGGTAAATACTGTATGATGTAGAGGAGTGCCTTTGTACCA
GAGTAGCATGGAGTCATTTGTACTGAATTTAGTAGTTCTAGATTACTTCTCTAGGGAAATGAACAGCTCTAGGTTACTAG
TGCTCTTTTGAGGTAGTGGTTGAGTTTTTAAGGACATAATTATTTCTTTTGAAGCAGTTGCCTCTTCTAATGCTGATTTC
CTCTCAAACATAGGCTTTAAATTTGATAGAAACAGAATAATTTTCTGTTCCCCCTATCATTCTAGGTTATGAGTCTGTTT
TTGTTTTTTGCTGGGATCTAGATCAAGAATCTGGTTCTAAGTGTTCTAAATAAAATGGAATTCATAATCATTGGCCAATG
AGAAATTAATATAGTTGGCTCTTC-------TAACACAAGGAATTGGTATTGAGATTAGAATATGGGTAAGTGTTGGTTA
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTAGGCCATATGCTTGGCATGATGATTCATT
GCGGCCTCTTGTGCGAGAAGTGGCCATTAAAACAGTTGCAAATGGATGAGACGCTCCTGAATGCAGCATCAGACACG-CG
ACATACCGGCGGTGGTCTTCTCGGTCGGCGGCTACACCGGAAACTTCTTCCACGACATCTCGGACGTATTGATCCCCCTG
TACCTGACTTCATTCCAGTTTAAAGGCAGGGTGCAGTTATTCGTCACCGATTGCAAGCAGTGGTGGCTCAGGAAGTATAA
ACCGATTCTACGGAGGCTGTCGCGCTACGACATTGTCGATTTCGACTCGAACAATGATGTGCACTGCTTCCACCATGTGA
TCCTTGGTCTGGTGAGGGACAGGGACCTGATCATACGCCGGCATCCTACAAGAAACCCCAAGGGACACTCCATGGTAGGA
TTCACAAGATTCTTGCGCCACGCCTACGGTCTCTGACGTGACAGGCCATTTGTCCTTGGCAAAAACCCCGGCAAGAAGCC
GAGGATGCTGATCATATCTCGTCGAGGGACACGAAGGCTCCTGAACCTACACGAGGTGGAGGCCATGGCGACAGCGCTAG
GATTCGACGTGACGGTCTCCGAGGCCGGTGGCAACAGCATCAGGAGGTTCGCGGCGATGATGAACCCGTGCGACGTGCTG
GTAGCGGTCCATGGCGCAGGCCTGACCAACCAGATGTTCCTCCCGGCGCGGGCCGTGGTGGTTCAGATTGTGCCGTGGGG
CAGGATGGAGTGGATGGCCACCAACTTCTACGGTGAGCCAGCGCGTGGCATGGGCCTTCGGTACCTCGATTACCACGTCG
CCGGAGAGGAGAGCAGCGTCGCCCGATGGTACCCGAGGGACCATGCCGTGTTCAGGGACCCCTTGGCCATCCATGCACAG
GGGTGGAAGGCGCTTGCAGAGGTGGTGATGACGCAGGACGTGAGGCTCGATCTGGATAGGTTCAGGCCTACTCTCCTACG
TGCCCTGGACCTTCTTCAAGATTTTAAGTTCATGTGTCC--TTAACTCTTTTATTCTTCTGATGAGGTAAATAGGG----
TGCATGCATGTACTGGATAGTTTCGCGTAGTCTGAGTCTGGATTACATGTGGTTTAGCACTGACTGG------GCTCATG
GTAATAGAAAGTAATTATGCTATTTATCACCCGAAATGAAATTGAGTAAAGCTCTGTTAGGTAGCAAT-----AATCGTT
CACGACGGCATGCCAC-----------------------------------------------------CTAGTTCCCAA
ACATAACTGGTGAGATCATCATCAGTACTACATGGCGGCCTT-AATTCTTAGATGCAGCACTGATCTATTCAGCTCCCTT
ATG---ACCTCTT-----ATGTAGTAC-GTATTTGCAATTTGCAAAAGCTATATGTGTTCATGCGATGGGCGGTGGCGGT
GGGAATAGGGATGGGGTAGGC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGTGGGAGTGGCGGTAGG---------GATTGCGGTGGCGGTGGGGCTGGGGCTGGGCTCTCGGGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGGCAGTGTGGGTGGCAGGCCGGGCAATTGGCCTGGCACTCTTCCTGCGTCTTGAAGCATTTGGGGTA
GGGGAACAGCAGCGCGCAGCAGCCGCACTCCTCGTAAAGCTTGTCGTCCAGCTTGCACTCGCGGTGTATGCAGAACTTTA
TGTACAGCTTCCCCTCCTCCATCGCCGCCGTCTTGTTCCCGGACACCACCGC------CGCCCTCGTCCTCCCAGCTGCC
TGCGGACGACCTGACACAAACGAGAACAACACGTCGTCACCATGCATGCCCGTGGTGAAGATGACAACGGTGGTGGTGGT
A------TTGATGATGATGTAATAAGAACGGAGAAGAGAAGATGCA-----
>chr3B_523
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------TAAAATGGAATGCATAATCATTTGCCAATG
AGAAATGAAAATAGTTGGCTCTTC-------TAACATAAGGAATCGGTATTGAGATTAGAATGTGGGGAAGTGCTAGAAC
ATATTACATGCATGGTGACCATGAAAATTAACAAGTTATTGGTCTGTAGAGTGTAAAACTTTCCTAAG-----AATGTAT
GTGTTCTGAATGATAACTAGGAAATGCTATACACTAGCACTGTAAATGTTAGTCAGCTAATGTATCGTGCAGATGATTAT
GATATCACTGAAGGACATGCTCATTCTTGCTACACAATATTTATTTTTGTTCGCTGGTTATCTTTGCTAATGTTGACTGT
TGTTTACTGTTCAGTGTTGCCTGTTATAGATCCTGAACTTAAGAGTGACACTTTCAAGATAAAGACATATTCAGAAAGTA
AATTAGGGAAAGAGGGACAACATGCATCCACCCCGGAGTCCATTCCCCATCCTGAAATGGATGGCTCTTCCAGCAAATCT
CCACAGTCAGGTCAGATAACAGCCATATACAAAA-ATTAAAGATTTGGCAACAAATTTTCCTTATGCTAACATGAAGATG
GTACTGATTTTCTTTTCCAGCAACAGTTGCAGAGATTGAAGTTCCAAAGCCTAAGGGTAGTATCACTTGTGATGATAAGA
GTAAAGACAATGATTTTCCCTATGCAAGGCCAGTCGTCTGTAAGATGTCCGGTGATGTTCGGATTGCTCCAGGAAGCTCA
TCAGTCATTCTCAGCATGCCACTGTATCAAAGTGCAGAAGGACGACGCGTTAGGCCATATGCTCGCCATGATGATTCATT
GCCGCCTCTTGTGAGAGAAGTGGCCATTAAAACAGTTGCAAATGGAAGTGACGCTCCTGAATGCAGCGTCGGACACGGCG
ACATACCAGCAGTGGTCTTCTCGGTCGGCGGCTACACCAGAAACTTCTTCCACGACATGTCGGACGTGCTGATCCCACTG
TACCTGACTGCCTTCCAGTTCAAAGGGCGGGTGCAGTTCTTCGTCACCGACTACAAGCAGTGGTGGCTCAAGAAGTATAA
ACCGATTCTACGGAGGCTGTCGCGCTACGACATTGTCGATTTCGACTCGAACAATGATGTGCACTGCTTCCACCATGTGA
TCCTTGGGCTGGTGAGGGACAGGGACCTGATCCTTCGCCGACATCCTACAAGAAACCCCAAGGGATACTCCATGGTAGGA
TTCACAAGATTCTTGCGCCACGCCTACGGTCTCCGACGTAACAGGCCATTCGTCCTTGGCGAAAACCCCGGCAAGAAGCC
GAGGATGCTGATCATATCTCGCCGAGGGACACGGAGGCTCCTGAACCTACACCGGGTGGAGGCCATGGCGACGGCGCTAG
GATTCGACGTGACGGTCTCCGAGGCCGGTGGCAACAGCGTCAAGAGGTTCGCAGAGACGGTGAACTCTTGCGACGTGCTG
GTGGCGGTCCACGGTGGAGGCCTGACTAACCAGATGTTCCTCCCAGCGAAGGCTGTGGTGGTGCAGATCGTGCCATGGGG
CGGGATGGAGTGGATGGCCACCAACTTTTACGGTGAGCCGGCGCGTGGCATGGGCCTTCGGTACCTCGAGTACCATGTCG
CCGGAGAAGAGAGCAGCCTTGCACGGCGGTACCCGAGAGACCATGCCGTGTTCAGGGACCCCATGGCCATCCATGCGCAG
GGGTGGAAGGCGCTGGCGGAGGTGGTGATGACGCAGGACGTGAGGCTCGATCTAGACAGGTTCACGCCGACACTCCTACG
TGCCCTGGACCTTCTTCAAGATT--AAGTTCATGTGTCCTTTTCTTGA--TACTTTTTCTTCTGAGATAAATAGAGCGCA
TGCATGCATGTATTGGATAGTTTTGTATAGACTGGA------------------------TTACTGTGCCTGTGCTCATG
GTAATGGAAATGTT--------------ACTCGAAATTGAATTGCATAAAACTTTGAAAGGTAGCAAC-----AATGATT
CTCTCACTGCATGCCCATCTGTCTCAATTCCTCCAATGAACCACTAGAAATCCAGAGAATTTTATTACTCTAGTTCCCAA
ACATATCTCGTGAGATCATCACCAGTACTAC-------------------------------------------------
--------------------------------------------------------------------------GGCGGG
AGTGGCGGGAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGGTGGGAGTGGTGGCGGTAGGGATGGCGATGGCGGCGGCGGCGGGGATGGGGCTGGGCTCTCGGGC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGGCAGTGGGGGTGGCAGGCGGGGCAATTGGCCTGGCACTCTTGCTGCGTCTTGAAGCACTTGGGGTA
GGGGAACAGGAACGCGCAGCAGCCGCACTCCTCGTAGAGCTTGTCGTCCAGCTTGCACTCAGGGTGTATGCAGAACTTTA
TGTACAGCTTCCCCTCCTCCATCGCCGCCGTCTTGTTCCCGGACACCACCGGCGCCGGCGCCCTCGCCCTCCCTGC---C
TCCGGACGACCTGACACAAACGAGAACACCGCGTCGTCA-----------------------------------------
---------------------------------------------------
>chr3D_1530
--------------------------------------------------------------------------------
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-------------------------GGAGGGTGCGGTTCTTGGTCACCGACTACAAGCAGTTGTGGCCCAAGAAGTATAA
ACCGATTCTACGGAGGCTGTCATGCTACGACATTGTCGATTTCGACTCGAACAATGATGTGCACTGCTTCCACCATGTGA
TCCTTGGACTGTTGAGGGACAGGAACCTGATCATACGCCGGCATCCTACAAGAAACCCCAAGGGACACTCCATGGTGGGA
TTCACAAGATTCCTGCGCCGCGCCTACGGTCTCCGAAGAGACAGGCCTCTGGCCCTAGGCGAAAACTCCGGCAAGAAGCC
GAGGATGCTGATCATATCTCGCCGAGGGACACGGAGGCTCCTGAACCTGCACCAGGTGGAGACTATGGCAACATTGGTAG
GATTCGACGTGACGGTCTCCGAGGCTAGGGACAACGACATCAAGAGGTTCGCAGAGACGGTGAACTCTTGCGACGTGCTG
GTGGCGGTGCACGGTGCTGGCCTGACCAACCAGGTGTTCCTCCCGGCGCGGGCGGTGGTGGTTCAGATCGTGCCGTGAGG
CGGAATGGAGTGGATGGCCACCAACTTCTACGGTGAGCCGGCGTGAGGCATGGGCCTGCGGTACCTCGAGTACCGCATCG
CCGGAGAGGAGAGCAGCCTAGCCGGGCGATACCCGAGGGACCATGCCGTGTTCAGGGACCCCATGGCCATCCATGCACAG
GGGTGGAAGGCGCTGGCGGAGGTGGTGATGACGCAAGACGTGAGCCTCGATCTTGACAGGTTCAGGCCTACACTCCTACG
TGCCCTGGACCTTCTTCAAGATT--AAGTTCATGTATCC--TTCTTGA--TTCTTTTTCTTCTGAGGTAAATAGAGCGCA
TGCATGCATGTATTGGACAGTTTTGTATAGACTGGA------------------------TTACTGC------GTTCATA
GTAATGGAAATGTT--------------ACACGAAATGGAATCGAATAAACCTTTGTTAGGCCATCATGCAGTAATGATT
CTCTCACTGCATGCCCATCTGTCTCAATTCCTCCAACGAATCACTAGAAAGCCGGAGAATTTTATTACTCTAGTTCCCAA
ACATATCTCGTGAGATCATCATCAGTACTACATGATGGCCCTCAACTCTCAGATGCAGCACTGATCTATTCATCTCTCTT
ATGTCGACCTCTT-----ATGTAATGTAGTATTTGCAAATTGCAAAAGCTATATGTGTTCATGCCATGGTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GGGTGGGAGTGGCGGCGGTAGGGATGGCGATGGCGGTGGCGGTGGGGATGGGGCTGGGCTCTCGGGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGGCAGTGGGGGTGGCAGGCGGGGCAATTGGCCTGGCACTCCTGCTGCGTCTTGAAGCACTTGGGGTA
GGGGAACAGGAACGCGCAGCAGCCGCACTCCTCGTAAAGCTTGTCGTCCAGCTTGCACTCGCGGTGTATGCAGAACTTTA
TGTACAGCTTCCCCTCCTCCATCGCCGCCGTCTTGTTCCCGGACACCACCGGCGCTGG----------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3A_1936
--------------------------------------------------------------------------------
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-------------------------------CAACAGCATCAGGAGGTTCGTGGCGACGGTGAACTCGTGCGACATGCTG
GTGGCGGTCCATGGCGCAGGCCTGACCAACCAGATGTTCCTCCTGGCGCGG-CCGTGGTGGTACAGATCGTGCCGTGGGG
CAGGATGGAGTGGATGGCCACCAACTTCTACGGTGAGCCAGCGCGTGGCATGG---------------------------
---------------------CCCGACGGTACCCGAGGGACCATGCCGTGTTCAGGGACCCCATGGCCATCCATGCACAG
GGGTGGAAGGCGCTTGCAGAGGTGGTGATGACGCAGGACGTGAGGCTCGATCTGGACAGGTTCAGGCCTACTCTCCTACG
TGCCCTGGACCTTCTTCAAGATTTTAAGTTCATGTGTCC--TTGACTCTTTTATTCTTCTGATGAGGTAAATAGGG----
TGCATGCATGTACTGGATAGTTTCGCGTAGTCTGAGTCTGGATTACATGTGGTTTAGCACTGACTGG------GCTCATG
GTAATAGAAAGTAATTATGCTATTTATCACCCGAAATGGAATTGAGTAAAGCTCTGTTAGGTAGCAAT-----AATCGTT
CACGACGGCATGCCAC-----------------------------------------------------CTAGTTCCCAA
ACATAACTGGTGAGATCATCATCAGTACTACATGGCGGCCTT-AATTCTTAGATGCAGCACTGATCTATTCAGCTCCCTT
ATG---ACCTCTT-----ATGTAGTAC-ATATTTGCAATTTGCAAAAGCTATATGTGTTCATGCGATGGGCGGTGGCGGT
GGGAATAGGGATGGGGTAGGC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGTGGGAGTGGCGGTAGG---------GATTGTGGTGGCGGTGGGGCTGGGGCTGGGCTCTCGGGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGGCAGTGTGGGTGGCAGGCCGGGCAATTGGCCTGGCACTCTTCCTGCGTCTTGAAGCATTTGGGATA
GGGGAACAGCAGCGCGCAGCAGCCGCACTCCTCGTAAAGCTTGTCGTCCAGCTTGCACTCGCGGTGTATGCAGAACTTTA
TGTACAGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
--S---S---------S--------SSS------S----S------------------------------S-----S-S-
---S------SSS----------S--S------S---SSSSSSS-S-SS-----------------S-------------
------------S--SSS------------S------S--S---SSSS-SSSSSSSS-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S---S-----S----S-----
-----------------S---------S------S------------------S-S-----------S----S---S---
--S--SSSS------------------SS--------S----------SS--------S----------------S-S--
SS----------------------SSSSSSS----------S----------S---------------------------
-SS-SSS----------------S----SS----S-------S--S--S-----SS--S--SSSS--SSSSSS-------
--S------------------------SS--SS-----S-----SS--S--SS-------SS-S--S------S------
------S-SS---------------S--S------S----S-----------S---------------------------
---------------------S--SS-S-------------SS-------S-S-------S----------------S--
--------------------S--------S----S----------------S-----------------S----------
----------------------------------S---------------------------------------S-----
-----------------------------------------------------------------S--------------
SS-----SS-S-SS--S---------------S-S-----S-----------S--S------------------------
-----------S-SS-----S-----------S--S-----S--------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
------------------------------------------------------------------S-------------
-----------S---S------------------------------------S-------S-------------------
-------------------S-------------------------S------------S---------------------
----S----S----------------------------S-----------------S-----------------S-----
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
------------S-------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S----------------------S--------------------------
-------------SSSSS----------------------------------S---------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------S-----------------------------------------------------
--S--------------------S---------------SSSS-SSSSSSS-SS---------------S----------
-SSSSSS------S-----S----------S---------------SSSSS
>forward_278
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CATACTCCGCTACACCGCTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_2021
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GCTGTATCAAAGCGCGGAAG----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------
>forward_1953
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CTTCCCCTATGCAAGGCCAA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_3493
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------GTGTGTTCATGCCATGGTCG--------
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