Multiple sequence alignment - TraesCS3D01G022500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G022500 chr3D 100.000 3620 0 0 1 3620 7226996 7230615 0.000000e+00 6685.0
1 TraesCS3D01G022500 chr3B 92.728 3259 176 29 1 3231 8811865 8815090 0.000000e+00 4649.0
2 TraesCS3D01G022500 chr3B 81.818 110 17 2 2212 2318 790541571 790541462 4.980000e-14 89.8
3 TraesCS3D01G022500 chr3A 91.149 3265 198 36 1 3231 13036218 13033011 0.000000e+00 4344.0
4 TraesCS3D01G022500 chr3A 76.035 459 57 22 2789 3229 13032898 13032475 4.770000e-44 189.0
5 TraesCS3D01G022500 chr6D 94.030 67 4 0 2213 2279 472965773 472965707 6.390000e-18 102.0
6 TraesCS3D01G022500 chr6A 94.030 67 4 0 2213 2279 616862630 616862696 6.390000e-18 102.0
7 TraesCS3D01G022500 chr6A 87.356 87 8 3 2194 2279 616881115 616881199 2.980000e-16 97.1
8 TraesCS3D01G022500 chr5A 83.654 104 14 3 2211 2313 664265175 664265276 1.070000e-15 95.3
9 TraesCS3D01G022500 chr4D 83.654 104 14 3 2211 2313 484045474 484045575 1.070000e-15 95.3
10 TraesCS3D01G022500 chr4B 83.654 104 14 3 2211 2313 615251957 615252058 1.070000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G022500 chr3D 7226996 7230615 3619 False 6685.0 6685 100.000 1 3620 1 chr3D.!!$F1 3619
1 TraesCS3D01G022500 chr3B 8811865 8815090 3225 False 4649.0 4649 92.728 1 3231 1 chr3B.!!$F1 3230
2 TraesCS3D01G022500 chr3A 13032475 13036218 3743 True 2266.5 4344 83.592 1 3231 2 chr3A.!!$R1 3230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 1.028905 AGATAGCAGCCTCAGACGAC 58.971 55.0 0.0 0.0 0.0 4.34 F
1523 1572 0.040351 CTCCACCCCTCTGTCTCTGA 59.960 60.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 1924 0.179062 CATGAGGGTAGCAGAGCACC 60.179 60.0 0.00 0.00 0.0 5.01 R
3476 3540 0.034670 GGGTCTGAGATTGCAAGGCT 60.035 55.0 4.94 4.65 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.482182 TCCGAGGATGATGTGTTCCAG 59.518 52.381 0.00 0.00 34.27 3.86
55 56 1.028905 AGATAGCAGCCTCAGACGAC 58.971 55.000 0.00 0.00 0.00 4.34
106 107 6.101734 AGGCCATCAGGAAGAGAATTTATGTA 59.898 38.462 5.01 0.00 36.89 2.29
169 170 4.183865 CAAGGACGTGATTATTGCTCTGA 58.816 43.478 0.00 0.00 0.00 3.27
236 242 3.554324 GTCTAGAGACTACTGAGACGCAG 59.446 52.174 4.47 4.47 44.54 5.18
321 335 8.714179 TGTGATACTCCTACGTTTAACAATTTG 58.286 33.333 0.00 0.00 0.00 2.32
349 363 7.563888 TTATGATGGCTTCTCTCTTTGAATG 57.436 36.000 1.86 0.00 0.00 2.67
395 409 6.808212 CAGAAGCTTTTTGAAGAAGTGAAACA 59.192 34.615 0.00 0.00 41.43 2.83
443 466 5.470047 AAGTACCACTGAACCTAACTCAG 57.530 43.478 0.00 0.00 44.90 3.35
474 497 7.065803 TCGCCTGATTATTTTCCAAGTTTCTAG 59.934 37.037 0.00 0.00 0.00 2.43
662 685 1.573108 CTGGGGTATCAGTGTCCACT 58.427 55.000 0.00 0.00 43.61 4.00
664 687 3.104512 CTGGGGTATCAGTGTCCACTAA 58.895 50.000 0.00 0.00 40.20 2.24
693 724 3.338249 TGGACTGATGCAACTAAGCTTC 58.662 45.455 0.00 0.00 38.68 3.86
694 725 3.244526 TGGACTGATGCAACTAAGCTTCA 60.245 43.478 0.00 0.00 43.64 3.02
695 726 3.753272 GGACTGATGCAACTAAGCTTCAA 59.247 43.478 0.00 0.00 44.66 2.69
696 727 4.142730 GGACTGATGCAACTAAGCTTCAAG 60.143 45.833 0.00 0.00 44.66 3.02
697 728 3.190118 ACTGATGCAACTAAGCTTCAAGC 59.810 43.478 0.00 0.00 44.66 4.01
698 729 3.148412 TGATGCAACTAAGCTTCAAGCA 58.852 40.909 13.10 10.23 45.56 3.91
699 730 3.189910 TGATGCAACTAAGCTTCAAGCAG 59.810 43.478 13.10 3.42 45.56 4.24
700 731 1.881973 TGCAACTAAGCTTCAAGCAGG 59.118 47.619 13.10 3.45 45.56 4.85
701 732 1.882623 GCAACTAAGCTTCAAGCAGGT 59.117 47.619 13.10 4.12 45.56 4.00
702 733 3.074412 GCAACTAAGCTTCAAGCAGGTA 58.926 45.455 13.10 0.00 45.56 3.08
703 734 3.691609 GCAACTAAGCTTCAAGCAGGTAT 59.308 43.478 13.10 0.00 45.56 2.73
704 735 4.201861 GCAACTAAGCTTCAAGCAGGTATC 60.202 45.833 13.10 0.00 45.56 2.24
705 736 5.181748 CAACTAAGCTTCAAGCAGGTATCT 58.818 41.667 13.10 0.00 45.56 1.98
706 737 5.017294 ACTAAGCTTCAAGCAGGTATCTC 57.983 43.478 13.10 0.00 45.56 2.75
707 738 4.714308 ACTAAGCTTCAAGCAGGTATCTCT 59.286 41.667 13.10 0.00 45.56 3.10
708 739 4.566426 AAGCTTCAAGCAGGTATCTCTT 57.434 40.909 13.10 0.00 45.56 2.85
720 751 5.582665 GCAGGTATCTCTTTAGGTTTCACTG 59.417 44.000 0.00 0.00 0.00 3.66
729 760 8.429641 TCTCTTTAGGTTTCACTGTTATGTTCT 58.570 33.333 0.00 0.00 0.00 3.01
733 764 6.867662 AGGTTTCACTGTTATGTTCTTCTG 57.132 37.500 0.00 0.00 0.00 3.02
764 795 7.509141 TTTGTTCATCATGCTCTGTTTTCTA 57.491 32.000 0.00 0.00 0.00 2.10
765 796 7.692460 TTGTTCATCATGCTCTGTTTTCTAT 57.308 32.000 0.00 0.00 0.00 1.98
789 820 2.582052 AGATTTTCTTTGGGCGTGTCA 58.418 42.857 0.00 0.00 0.00 3.58
792 823 2.570442 TTTCTTTGGGCGTGTCAAAC 57.430 45.000 0.00 0.00 31.71 2.93
798 829 2.264005 TGGGCGTGTCAAACTGTTAT 57.736 45.000 0.00 0.00 0.00 1.89
804 835 4.455124 GCGTGTCAAACTGTTATGAGTTC 58.545 43.478 0.00 0.00 35.01 3.01
834 869 4.747108 GGTATGTTCTCCATGATTGAGTCG 59.253 45.833 0.00 0.00 34.86 4.18
844 879 2.688507 TGATTGAGTCGTCTCCTTTGC 58.311 47.619 7.21 0.00 39.75 3.68
852 887 5.122239 TGAGTCGTCTCCTTTGCAATATTTG 59.878 40.000 0.00 0.00 39.75 2.32
856 891 6.312918 GTCGTCTCCTTTGCAATATTTGTCTA 59.687 38.462 0.00 0.00 0.00 2.59
858 893 6.456988 CGTCTCCTTTGCAATATTTGTCTACC 60.457 42.308 0.00 0.00 0.00 3.18
870 906 9.965824 CAATATTTGTCTACCACTTTTTGTCTT 57.034 29.630 0.00 0.00 0.00 3.01
898 936 5.669164 ACACTTTACACAACAACCCAATT 57.331 34.783 0.00 0.00 0.00 2.32
1009 1055 8.643324 ACTAACAGAGCAGGTTAGAATATAAGG 58.357 37.037 21.51 1.98 46.74 2.69
1043 1089 2.234661 CAGGGAGTGTCATTGCTACTCA 59.765 50.000 16.63 0.00 41.93 3.41
1111 1157 3.709653 TCAGTCTTACTGTCAAGGTTGGT 59.290 43.478 6.93 0.00 46.03 3.67
1160 1206 1.671054 CCGGTTTCGCTCATGGTGT 60.671 57.895 0.00 0.00 34.56 4.16
1163 1209 0.387239 GGTTTCGCTCATGGTGTTGC 60.387 55.000 0.00 0.00 0.00 4.17
1200 1246 6.299805 TCCTCTGCAGACATGTAAGTTATT 57.700 37.500 13.74 0.00 0.00 1.40
1204 1250 7.094634 CCTCTGCAGACATGTAAGTTATTGTTT 60.095 37.037 13.74 0.00 0.00 2.83
1206 1252 7.443879 TCTGCAGACATGTAAGTTATTGTTTCA 59.556 33.333 13.74 0.00 0.00 2.69
1219 1265 9.612066 AAGTTATTGTTTCATTGACATTTTGGT 57.388 25.926 0.00 0.00 0.00 3.67
1238 1284 3.181486 TGGTGTGTCGATGAATAGAGAGC 60.181 47.826 0.00 0.00 0.00 4.09
1263 1311 1.173913 GCCGGTTGCTGTAGGAAAAT 58.826 50.000 1.90 0.00 36.87 1.82
1296 1344 4.280929 GGGTCTTGTTTCTGCCAGTTTTAT 59.719 41.667 0.00 0.00 0.00 1.40
1523 1572 0.040351 CTCCACCCCTCTGTCTCTGA 59.960 60.000 0.00 0.00 0.00 3.27
1527 1576 1.080638 ACCCCTCTGTCTCTGAGAGT 58.919 55.000 7.80 0.00 36.04 3.24
1566 1615 3.479269 CCGCACGCGAGGAAGAAC 61.479 66.667 15.93 0.00 42.83 3.01
1627 1676 0.253327 GGTCACCCCTTCATCACCTC 59.747 60.000 0.00 0.00 0.00 3.85
1631 1680 0.836400 ACCCCTTCATCACCTCACGT 60.836 55.000 0.00 0.00 0.00 4.49
1637 1686 0.896479 TCATCACCTCACGTTCCGGA 60.896 55.000 0.00 0.00 0.00 5.14
1643 1692 0.953471 CCTCACGTTCCGGAATGCAA 60.953 55.000 31.83 20.39 0.00 4.08
1680 1729 1.734477 CGCGGTGGTCTTCTCAGTG 60.734 63.158 0.00 0.00 0.00 3.66
1685 1734 2.435059 GGTCTTCTCAGTGGGCGC 60.435 66.667 0.00 0.00 0.00 6.53
1689 1738 0.687757 TCTTCTCAGTGGGCGCCTAT 60.688 55.000 28.56 9.81 0.00 2.57
1875 1924 2.684843 GGACAGGCAAAGCGCAGAG 61.685 63.158 11.47 0.00 45.17 3.35
1971 2020 1.616327 TGGGCACTACTCCATGGCT 60.616 57.895 6.96 0.00 41.01 4.75
2001 2050 1.749033 CCTTGCCCGGAGATCCTAC 59.251 63.158 0.73 0.00 0.00 3.18
2479 2528 1.676635 CGGTCGGAGTACCTGGTCA 60.677 63.158 0.63 0.00 37.39 4.02
2564 2613 3.868757 TCACCATTAGAAGACACTCCG 57.131 47.619 0.00 0.00 0.00 4.63
2593 2642 8.403236 GGGCGTAGATTGTTTACAAGATAATTT 58.597 33.333 1.50 0.00 39.47 1.82
2640 2689 8.336987 AGTAAAATAAAGGGTCTGGCTAAATCT 58.663 33.333 0.00 0.00 0.00 2.40
2674 2723 1.344942 GATCGCTGTCACACGGTCAC 61.345 60.000 7.81 0.00 39.22 3.67
2681 2730 1.227527 TCACACGGTCACAAGGCAG 60.228 57.895 0.00 0.00 0.00 4.85
2685 2734 1.238439 CACGGTCACAAGGCAGATTT 58.762 50.000 0.00 0.00 0.00 2.17
2692 2741 1.067354 CACAAGGCAGATTTGAAGGCC 60.067 52.381 0.00 0.00 46.77 5.19
2700 2749 3.243334 GCAGATTTGAAGGCCAATCTAGC 60.243 47.826 14.00 14.86 34.23 3.42
2919 2971 7.012138 TGTGAAAAAGGTGTGTAAAGCGTAATA 59.988 33.333 0.00 0.00 0.00 0.98
2951 3005 3.993081 AGATTTCTCTGCTGTTTCTGTCG 59.007 43.478 0.00 0.00 0.00 4.35
3031 3085 8.772250 TGGATCATTTAAGATTTCTGGTACTCT 58.228 33.333 0.00 0.00 0.00 3.24
3074 3128 4.792068 ACAAATCTGGAGACTTTCAACCA 58.208 39.130 0.00 0.00 0.00 3.67
3082 3136 3.300009 GAGACTTTCAACCACAAATGCG 58.700 45.455 0.00 0.00 0.00 4.73
3091 3145 2.891112 ACCACAAATGCGCAATAATGG 58.109 42.857 24.42 24.42 0.00 3.16
3095 3149 3.481749 CACAAATGCGCAATAATGGTACG 59.518 43.478 17.11 0.00 0.00 3.67
3099 3153 0.041312 GCGCAATAATGGTACGCCTG 60.041 55.000 0.30 0.00 43.58 4.85
3170 3224 2.543037 ACTTTCCCTGGTGGTGTTTT 57.457 45.000 0.00 0.00 34.77 2.43
3191 3253 8.134895 TGTTTTCTCATCCAATTTTACACTGAC 58.865 33.333 0.00 0.00 0.00 3.51
3194 3256 7.615582 TCTCATCCAATTTTACACTGACATC 57.384 36.000 0.00 0.00 0.00 3.06
3220 3284 9.660180 CCATAATCTATTCTAGGCCTTAGTTTC 57.340 37.037 12.58 0.00 0.00 2.78
3221 3285 9.660180 CATAATCTATTCTAGGCCTTAGTTTCC 57.340 37.037 12.58 0.00 0.00 3.13
3231 3295 4.540502 AGGCCTTAGTTTCCTATCCTGTTT 59.459 41.667 0.00 0.00 0.00 2.83
3232 3296 4.882427 GGCCTTAGTTTCCTATCCTGTTTC 59.118 45.833 0.00 0.00 0.00 2.78
3234 3298 5.818336 GCCTTAGTTTCCTATCCTGTTTCTC 59.182 44.000 0.00 0.00 0.00 2.87
3235 3299 6.350103 CCTTAGTTTCCTATCCTGTTTCTCC 58.650 44.000 0.00 0.00 0.00 3.71
3237 3301 4.175962 AGTTTCCTATCCTGTTTCTCCCA 58.824 43.478 0.00 0.00 0.00 4.37
3238 3302 4.226168 AGTTTCCTATCCTGTTTCTCCCAG 59.774 45.833 0.00 0.00 0.00 4.45
3240 3304 1.839994 CCTATCCTGTTTCTCCCAGCA 59.160 52.381 0.00 0.00 0.00 4.41
3242 3306 2.978156 ATCCTGTTTCTCCCAGCAAA 57.022 45.000 0.00 0.00 0.00 3.68
3243 3307 2.978156 TCCTGTTTCTCCCAGCAAAT 57.022 45.000 0.00 0.00 0.00 2.32
3244 3308 2.517959 TCCTGTTTCTCCCAGCAAATG 58.482 47.619 0.00 0.00 0.00 2.32
3245 3309 2.158475 TCCTGTTTCTCCCAGCAAATGT 60.158 45.455 0.00 0.00 0.00 2.71
3246 3310 2.629617 CCTGTTTCTCCCAGCAAATGTT 59.370 45.455 0.00 0.00 0.00 2.71
3248 3312 4.321230 CCTGTTTCTCCCAGCAAATGTTAC 60.321 45.833 0.00 0.00 0.00 2.50
3249 3313 4.469657 TGTTTCTCCCAGCAAATGTTACT 58.530 39.130 0.00 0.00 0.00 2.24
3250 3314 4.892934 TGTTTCTCCCAGCAAATGTTACTT 59.107 37.500 0.00 0.00 0.00 2.24
3251 3315 5.221224 TGTTTCTCCCAGCAAATGTTACTTG 60.221 40.000 0.00 0.00 0.00 3.16
3253 3317 4.469657 TCTCCCAGCAAATGTTACTTGTT 58.530 39.130 0.00 0.00 0.00 2.83
3254 3318 4.518970 TCTCCCAGCAAATGTTACTTGTTC 59.481 41.667 0.00 0.00 0.00 3.18
3255 3319 4.211125 TCCCAGCAAATGTTACTTGTTCA 58.789 39.130 0.00 0.00 0.00 3.18
3256 3320 4.278170 TCCCAGCAAATGTTACTTGTTCAG 59.722 41.667 0.00 0.00 0.00 3.02
3257 3321 4.037923 CCCAGCAAATGTTACTTGTTCAGT 59.962 41.667 0.00 0.00 39.87 3.41
3259 3323 5.221028 CCAGCAAATGTTACTTGTTCAGTGA 60.221 40.000 0.00 0.00 35.97 3.41
3260 3324 5.911280 CAGCAAATGTTACTTGTTCAGTGAG 59.089 40.000 0.00 0.00 35.97 3.51
3261 3325 5.822519 AGCAAATGTTACTTGTTCAGTGAGA 59.177 36.000 0.00 0.00 35.97 3.27
3262 3326 6.488006 AGCAAATGTTACTTGTTCAGTGAGAT 59.512 34.615 0.00 0.00 35.97 2.75
3263 3327 6.580041 GCAAATGTTACTTGTTCAGTGAGATG 59.420 38.462 0.00 0.00 35.97 2.90
3265 3329 7.807977 AATGTTACTTGTTCAGTGAGATGTT 57.192 32.000 0.00 0.00 35.97 2.71
3266 3330 7.807977 ATGTTACTTGTTCAGTGAGATGTTT 57.192 32.000 0.00 0.00 35.97 2.83
3267 3331 7.015226 TGTTACTTGTTCAGTGAGATGTTTG 57.985 36.000 0.00 0.00 35.97 2.93
3268 3332 6.038161 TGTTACTTGTTCAGTGAGATGTTTGG 59.962 38.462 0.00 0.00 35.97 3.28
3269 3333 4.780815 ACTTGTTCAGTGAGATGTTTGGA 58.219 39.130 0.00 0.00 32.83 3.53
3270 3334 4.818546 ACTTGTTCAGTGAGATGTTTGGAG 59.181 41.667 0.00 0.00 32.83 3.86
3271 3335 4.422073 TGTTCAGTGAGATGTTTGGAGT 57.578 40.909 0.00 0.00 0.00 3.85
3273 3337 5.192927 TGTTCAGTGAGATGTTTGGAGTTT 58.807 37.500 0.00 0.00 0.00 2.66
3274 3338 5.066375 TGTTCAGTGAGATGTTTGGAGTTTG 59.934 40.000 0.00 0.00 0.00 2.93
3275 3339 4.136796 TCAGTGAGATGTTTGGAGTTTGG 58.863 43.478 0.00 0.00 0.00 3.28
3276 3340 4.136796 CAGTGAGATGTTTGGAGTTTGGA 58.863 43.478 0.00 0.00 0.00 3.53
3278 3342 4.137543 GTGAGATGTTTGGAGTTTGGACT 58.862 43.478 0.00 0.00 39.32 3.85
3279 3343 5.071788 AGTGAGATGTTTGGAGTTTGGACTA 59.928 40.000 0.00 0.00 35.88 2.59
3280 3344 5.763204 GTGAGATGTTTGGAGTTTGGACTAA 59.237 40.000 0.00 0.00 35.88 2.24
3281 3345 6.431234 GTGAGATGTTTGGAGTTTGGACTAAT 59.569 38.462 0.00 0.00 35.88 1.73
3282 3346 7.606456 GTGAGATGTTTGGAGTTTGGACTAATA 59.394 37.037 0.00 0.00 35.88 0.98
3283 3347 7.824289 TGAGATGTTTGGAGTTTGGACTAATAG 59.176 37.037 0.00 0.00 35.88 1.73
3285 3349 8.043710 AGATGTTTGGAGTTTGGACTAATAGAG 58.956 37.037 0.00 0.00 35.88 2.43
3286 3350 5.938125 TGTTTGGAGTTTGGACTAATAGAGC 59.062 40.000 0.00 0.00 35.88 4.09
3288 3352 5.344743 TGGAGTTTGGACTAATAGAGCAG 57.655 43.478 0.00 0.00 35.88 4.24
3289 3353 4.162320 TGGAGTTTGGACTAATAGAGCAGG 59.838 45.833 0.00 0.00 35.88 4.85
3290 3354 4.443598 GGAGTTTGGACTAATAGAGCAGGG 60.444 50.000 0.00 0.00 35.88 4.45
3293 3357 1.578703 TGGACTAATAGAGCAGGGGGA 59.421 52.381 0.00 0.00 0.00 4.81
3295 3359 2.158295 GGACTAATAGAGCAGGGGGAGA 60.158 54.545 0.00 0.00 0.00 3.71
3296 3360 3.577919 GACTAATAGAGCAGGGGGAGAA 58.422 50.000 0.00 0.00 0.00 2.87
3297 3361 3.576550 GACTAATAGAGCAGGGGGAGAAG 59.423 52.174 0.00 0.00 0.00 2.85
3298 3362 1.813102 AATAGAGCAGGGGGAGAAGG 58.187 55.000 0.00 0.00 0.00 3.46
3299 3363 0.944999 ATAGAGCAGGGGGAGAAGGA 59.055 55.000 0.00 0.00 0.00 3.36
3300 3364 0.944999 TAGAGCAGGGGGAGAAGGAT 59.055 55.000 0.00 0.00 0.00 3.24
3301 3365 0.944999 AGAGCAGGGGGAGAAGGATA 59.055 55.000 0.00 0.00 0.00 2.59
3302 3366 1.052617 GAGCAGGGGGAGAAGGATAC 58.947 60.000 0.00 0.00 0.00 2.24
3303 3367 0.343372 AGCAGGGGGAGAAGGATACA 59.657 55.000 0.00 0.00 41.41 2.29
3304 3368 1.213296 GCAGGGGGAGAAGGATACAA 58.787 55.000 0.00 0.00 41.41 2.41
3306 3370 1.141858 CAGGGGGAGAAGGATACAAGC 59.858 57.143 0.00 0.00 41.41 4.01
3307 3371 1.213296 GGGGGAGAAGGATACAAGCA 58.787 55.000 0.00 0.00 41.41 3.91
3310 3374 3.589288 GGGGGAGAAGGATACAAGCATAT 59.411 47.826 0.00 0.00 41.41 1.78
3311 3375 4.783227 GGGGGAGAAGGATACAAGCATATA 59.217 45.833 0.00 0.00 41.41 0.86
3312 3376 5.250774 GGGGGAGAAGGATACAAGCATATAA 59.749 44.000 0.00 0.00 41.41 0.98
3313 3377 6.410540 GGGGAGAAGGATACAAGCATATAAG 58.589 44.000 0.00 0.00 41.41 1.73
3315 3379 6.467677 GGAGAAGGATACAAGCATATAAGCA 58.532 40.000 2.37 0.00 41.41 3.91
3316 3380 6.936900 GGAGAAGGATACAAGCATATAAGCAA 59.063 38.462 2.37 0.00 41.41 3.91
3317 3381 7.118971 GGAGAAGGATACAAGCATATAAGCAAG 59.881 40.741 2.37 0.00 41.41 4.01
3318 3382 6.939163 AGAAGGATACAAGCATATAAGCAAGG 59.061 38.462 2.37 0.00 41.41 3.61
3319 3383 6.439636 AGGATACAAGCATATAAGCAAGGA 57.560 37.500 2.37 0.00 41.41 3.36
3320 3384 6.471146 AGGATACAAGCATATAAGCAAGGAG 58.529 40.000 2.37 0.00 41.41 3.69
3321 3385 6.043706 AGGATACAAGCATATAAGCAAGGAGT 59.956 38.462 2.37 0.00 41.41 3.85
3322 3386 6.370166 GGATACAAGCATATAAGCAAGGAGTC 59.630 42.308 2.37 0.00 36.85 3.36
3323 3387 4.122776 ACAAGCATATAAGCAAGGAGTCG 58.877 43.478 2.37 0.00 36.85 4.18
3324 3388 2.760374 AGCATATAAGCAAGGAGTCGC 58.240 47.619 2.37 0.00 36.85 5.19
3325 3389 2.103094 AGCATATAAGCAAGGAGTCGCA 59.897 45.455 2.37 0.00 36.85 5.10
3326 3390 3.070018 GCATATAAGCAAGGAGTCGCAT 58.930 45.455 0.00 0.00 0.00 4.73
3327 3391 3.499918 GCATATAAGCAAGGAGTCGCATT 59.500 43.478 0.00 0.00 0.00 3.56
3328 3392 4.612259 GCATATAAGCAAGGAGTCGCATTG 60.612 45.833 0.00 0.00 41.04 2.82
3332 3396 3.389741 CAAGGAGTCGCATTGCAAC 57.610 52.632 0.00 0.00 30.93 4.17
3333 3397 0.877071 CAAGGAGTCGCATTGCAACT 59.123 50.000 0.92 0.92 30.93 3.16
3334 3398 1.135859 CAAGGAGTCGCATTGCAACTC 60.136 52.381 19.28 19.28 38.94 3.01
3337 3401 0.445436 GAGTCGCATTGCAACTCCTG 59.555 55.000 17.19 0.00 34.63 3.86
3338 3402 0.250467 AGTCGCATTGCAACTCCTGT 60.250 50.000 0.00 0.00 0.00 4.00
3339 3403 0.110056 GTCGCATTGCAACTCCTGTG 60.110 55.000 0.00 2.75 0.00 3.66
3340 3404 0.534877 TCGCATTGCAACTCCTGTGT 60.535 50.000 0.00 0.00 0.00 3.72
3341 3405 0.386352 CGCATTGCAACTCCTGTGTG 60.386 55.000 0.00 0.00 0.00 3.82
3342 3406 0.038892 GCATTGCAACTCCTGTGTGG 60.039 55.000 0.00 0.00 37.10 4.17
3344 3408 2.165167 CATTGCAACTCCTGTGTGGAT 58.835 47.619 0.00 0.00 45.16 3.41
3345 3409 1.896220 TTGCAACTCCTGTGTGGATC 58.104 50.000 0.00 0.00 45.16 3.36
3346 3410 0.764271 TGCAACTCCTGTGTGGATCA 59.236 50.000 0.00 0.00 45.16 2.92
3347 3411 1.271001 TGCAACTCCTGTGTGGATCAG 60.271 52.381 0.00 0.00 45.16 2.90
3348 3412 1.271054 GCAACTCCTGTGTGGATCAGT 60.271 52.381 0.00 0.00 45.16 3.41
3349 3413 2.811873 GCAACTCCTGTGTGGATCAGTT 60.812 50.000 0.00 0.00 45.16 3.16
3350 3414 3.557054 GCAACTCCTGTGTGGATCAGTTA 60.557 47.826 0.00 0.00 45.16 2.24
3351 3415 4.641396 CAACTCCTGTGTGGATCAGTTAA 58.359 43.478 0.00 0.00 45.16 2.01
3354 3418 5.248640 ACTCCTGTGTGGATCAGTTAATTG 58.751 41.667 0.00 0.00 45.16 2.32
3357 3421 5.882000 TCCTGTGTGGATCAGTTAATTGATG 59.118 40.000 17.25 2.43 40.56 3.07
3358 3422 5.882000 CCTGTGTGGATCAGTTAATTGATGA 59.118 40.000 17.25 2.29 37.90 2.92
3359 3423 6.037940 CCTGTGTGGATCAGTTAATTGATGAG 59.962 42.308 17.25 4.64 37.90 2.90
3360 3424 6.710278 TGTGTGGATCAGTTAATTGATGAGA 58.290 36.000 17.25 1.17 37.90 3.27
3363 3427 9.330063 GTGTGGATCAGTTAATTGATGAGATAA 57.670 33.333 17.25 0.00 37.90 1.75
3376 3440 8.922058 ATTGATGAGATAATCTTTGTGTTTGC 57.078 30.769 0.00 0.00 0.00 3.68
3377 3441 6.855836 TGATGAGATAATCTTTGTGTTTGCC 58.144 36.000 0.00 0.00 0.00 4.52
3378 3442 6.433716 TGATGAGATAATCTTTGTGTTTGCCA 59.566 34.615 0.00 0.00 0.00 4.92
3379 3443 6.012658 TGAGATAATCTTTGTGTTTGCCAC 57.987 37.500 0.00 0.00 44.78 5.01
3392 3456 3.756434 TGTTTGCCACACTAGAATTAGGC 59.244 43.478 0.00 3.16 42.32 3.93
3395 3459 1.138266 GCCACACTAGAATTAGGCCGA 59.862 52.381 0.00 0.00 36.17 5.54
3396 3460 2.822764 CCACACTAGAATTAGGCCGAC 58.177 52.381 0.00 0.00 0.00 4.79
3397 3461 2.167693 CCACACTAGAATTAGGCCGACA 59.832 50.000 0.00 0.00 0.00 4.35
3398 3462 3.369052 CCACACTAGAATTAGGCCGACAA 60.369 47.826 0.00 0.00 0.00 3.18
3399 3463 3.617263 CACACTAGAATTAGGCCGACAAC 59.383 47.826 0.00 0.00 0.00 3.32
3400 3464 3.195661 CACTAGAATTAGGCCGACAACC 58.804 50.000 0.00 0.00 0.00 3.77
3401 3465 3.105283 ACTAGAATTAGGCCGACAACCT 58.895 45.455 0.00 0.00 41.57 3.50
3402 3466 3.518303 ACTAGAATTAGGCCGACAACCTT 59.482 43.478 0.00 0.00 38.81 3.50
3404 3468 3.081804 AGAATTAGGCCGACAACCTTTG 58.918 45.455 0.00 0.00 38.81 2.77
3408 3472 0.470766 AGGCCGACAACCTTTGTGTA 59.529 50.000 0.00 0.00 45.52 2.90
3409 3473 0.589708 GGCCGACAACCTTTGTGTAC 59.410 55.000 0.00 0.00 45.52 2.90
3410 3474 1.301423 GCCGACAACCTTTGTGTACA 58.699 50.000 0.00 0.00 45.52 2.90
3411 3475 1.877443 GCCGACAACCTTTGTGTACAT 59.123 47.619 0.00 0.00 45.52 2.29
3412 3476 2.350388 GCCGACAACCTTTGTGTACATG 60.350 50.000 0.00 0.00 45.52 3.21
3413 3477 3.135225 CCGACAACCTTTGTGTACATGA 58.865 45.455 0.00 0.00 45.52 3.07
3414 3478 3.562141 CCGACAACCTTTGTGTACATGAA 59.438 43.478 0.00 0.00 45.52 2.57
3415 3479 4.035792 CCGACAACCTTTGTGTACATGAAA 59.964 41.667 0.00 0.82 45.52 2.69
3418 3482 6.142161 CGACAACCTTTGTGTACATGAAAATG 59.858 38.462 0.00 1.22 45.52 2.32
3419 3483 6.872920 ACAACCTTTGTGTACATGAAAATGT 58.127 32.000 0.00 1.81 43.48 2.71
3420 3484 7.327214 ACAACCTTTGTGTACATGAAAATGTT 58.673 30.769 0.00 7.48 43.48 2.71
3423 3487 7.202526 ACCTTTGTGTACATGAAAATGTTCTG 58.797 34.615 0.00 0.00 36.08 3.02
3424 3488 6.144402 CCTTTGTGTACATGAAAATGTTCTGC 59.856 38.462 0.00 0.00 36.08 4.26
3425 3489 5.119931 TGTGTACATGAAAATGTTCTGCC 57.880 39.130 0.00 0.00 36.08 4.85
3426 3490 4.022416 TGTGTACATGAAAATGTTCTGCCC 60.022 41.667 0.00 0.00 36.08 5.36
3430 3494 3.244976 CATGAAAATGTTCTGCCCGTTC 58.755 45.455 0.00 0.00 34.60 3.95
3431 3495 1.611491 TGAAAATGTTCTGCCCGTTCC 59.389 47.619 0.00 0.00 34.60 3.62
3432 3496 1.611491 GAAAATGTTCTGCCCGTTCCA 59.389 47.619 0.00 0.00 0.00 3.53
3435 3499 1.923356 ATGTTCTGCCCGTTCCAATT 58.077 45.000 0.00 0.00 0.00 2.32
3436 3500 2.570415 TGTTCTGCCCGTTCCAATTA 57.430 45.000 0.00 0.00 0.00 1.40
3437 3501 3.080300 TGTTCTGCCCGTTCCAATTAT 57.920 42.857 0.00 0.00 0.00 1.28
3438 3502 2.752354 TGTTCTGCCCGTTCCAATTATG 59.248 45.455 0.00 0.00 0.00 1.90
3439 3503 2.752903 GTTCTGCCCGTTCCAATTATGT 59.247 45.455 0.00 0.00 0.00 2.29
3441 3505 3.537580 TCTGCCCGTTCCAATTATGTAC 58.462 45.455 0.00 0.00 0.00 2.90
3442 3506 3.055021 TCTGCCCGTTCCAATTATGTACA 60.055 43.478 0.00 0.00 0.00 2.90
3443 3507 3.882888 CTGCCCGTTCCAATTATGTACAT 59.117 43.478 13.93 13.93 0.00 2.29
3444 3508 3.880490 TGCCCGTTCCAATTATGTACATC 59.120 43.478 12.68 0.00 0.00 3.06
3445 3509 3.059188 GCCCGTTCCAATTATGTACATCG 60.059 47.826 12.68 6.97 0.00 3.84
3446 3510 4.124238 CCCGTTCCAATTATGTACATCGT 58.876 43.478 12.68 0.00 0.00 3.73
3447 3511 5.291178 CCCGTTCCAATTATGTACATCGTA 58.709 41.667 12.68 0.00 0.00 3.43
3448 3512 5.929992 CCCGTTCCAATTATGTACATCGTAT 59.070 40.000 12.68 2.01 0.00 3.06
3449 3513 6.425721 CCCGTTCCAATTATGTACATCGTATT 59.574 38.462 12.68 8.11 0.00 1.89
3450 3514 7.599621 CCCGTTCCAATTATGTACATCGTATTA 59.400 37.037 12.68 0.00 0.00 0.98
3478 3542 5.826586 TGAGAGATTCTCGTTATTCTCAGC 58.173 41.667 8.01 0.00 46.25 4.26
3479 3543 5.195001 AGAGATTCTCGTTATTCTCAGCC 57.805 43.478 8.01 0.00 37.63 4.85
3481 3545 5.362430 AGAGATTCTCGTTATTCTCAGCCTT 59.638 40.000 8.01 0.00 37.63 4.35
3483 3547 2.893637 TCTCGTTATTCTCAGCCTTGC 58.106 47.619 0.00 0.00 0.00 4.01
3484 3548 2.233676 TCTCGTTATTCTCAGCCTTGCA 59.766 45.455 0.00 0.00 0.00 4.08
3485 3549 3.002791 CTCGTTATTCTCAGCCTTGCAA 58.997 45.455 0.00 0.00 0.00 4.08
3486 3550 3.609853 TCGTTATTCTCAGCCTTGCAAT 58.390 40.909 0.00 0.00 0.00 3.56
3487 3551 3.623060 TCGTTATTCTCAGCCTTGCAATC 59.377 43.478 0.00 0.00 0.00 2.67
3488 3552 3.624861 CGTTATTCTCAGCCTTGCAATCT 59.375 43.478 0.00 0.00 0.00 2.40
3489 3553 4.260538 CGTTATTCTCAGCCTTGCAATCTC 60.261 45.833 0.00 0.00 0.00 2.75
3493 3557 2.008329 CTCAGCCTTGCAATCTCAGAC 58.992 52.381 0.00 0.00 0.00 3.51
3494 3558 1.093159 CAGCCTTGCAATCTCAGACC 58.907 55.000 0.00 0.00 0.00 3.85
3495 3559 0.034670 AGCCTTGCAATCTCAGACCC 60.035 55.000 0.00 0.00 0.00 4.46
3496 3560 0.034670 GCCTTGCAATCTCAGACCCT 60.035 55.000 0.00 0.00 0.00 4.34
3497 3561 2.016096 GCCTTGCAATCTCAGACCCTC 61.016 57.143 0.00 0.00 0.00 4.30
3498 3562 1.649664 CTTGCAATCTCAGACCCTCG 58.350 55.000 0.00 0.00 0.00 4.63
3499 3563 1.205655 CTTGCAATCTCAGACCCTCGA 59.794 52.381 0.00 0.00 0.00 4.04
3500 3564 1.266178 TGCAATCTCAGACCCTCGAA 58.734 50.000 0.00 0.00 0.00 3.71
3501 3565 1.623311 TGCAATCTCAGACCCTCGAAA 59.377 47.619 0.00 0.00 0.00 3.46
3502 3566 2.275318 GCAATCTCAGACCCTCGAAAG 58.725 52.381 0.00 0.00 0.00 2.62
3503 3567 2.898705 CAATCTCAGACCCTCGAAAGG 58.101 52.381 0.00 0.00 42.95 3.11
3504 3568 0.827368 ATCTCAGACCCTCGAAAGGC 59.173 55.000 1.04 0.00 41.85 4.35
3505 3569 0.251832 TCTCAGACCCTCGAAAGGCT 60.252 55.000 1.04 0.00 41.85 4.58
3507 3571 0.541998 TCAGACCCTCGAAAGGCTCA 60.542 55.000 1.04 0.00 41.85 4.26
3509 3573 1.065854 CAGACCCTCGAAAGGCTCAAT 60.066 52.381 1.04 0.00 41.85 2.57
3510 3574 2.168521 CAGACCCTCGAAAGGCTCAATA 59.831 50.000 1.04 0.00 41.85 1.90
3511 3575 2.838202 AGACCCTCGAAAGGCTCAATAA 59.162 45.455 1.04 0.00 41.85 1.40
3513 3577 4.654262 AGACCCTCGAAAGGCTCAATAATA 59.346 41.667 1.04 0.00 41.85 0.98
3514 3578 5.130477 AGACCCTCGAAAGGCTCAATAATAA 59.870 40.000 1.04 0.00 41.85 1.40
3516 3580 7.016268 AGACCCTCGAAAGGCTCAATAATAATA 59.984 37.037 1.04 0.00 41.85 0.98
3517 3581 7.514721 ACCCTCGAAAGGCTCAATAATAATAA 58.485 34.615 1.04 0.00 41.85 1.40
3518 3582 8.164070 ACCCTCGAAAGGCTCAATAATAATAAT 58.836 33.333 1.04 0.00 41.85 1.28
3519 3583 9.014297 CCCTCGAAAGGCTCAATAATAATAATT 57.986 33.333 0.00 0.00 41.85 1.40
3522 3586 9.677567 TCGAAAGGCTCAATAATAATAATTTGC 57.322 29.630 0.00 0.00 0.00 3.68
3559 3623 9.928236 GTTTTAAAAATTAACTTTCTGCATGCA 57.072 25.926 21.29 21.29 0.00 3.96
3563 3627 7.790823 AAAATTAACTTTCTGCATGCAAAGT 57.209 28.000 25.28 25.28 43.28 2.66
3564 3628 7.412137 AAATTAACTTTCTGCATGCAAAGTC 57.588 32.000 28.93 0.00 41.09 3.01
3565 3629 5.772825 TTAACTTTCTGCATGCAAAGTCT 57.227 34.783 28.93 22.07 41.09 3.24
3567 3631 4.234530 ACTTTCTGCATGCAAAGTCTTC 57.765 40.909 25.28 0.00 38.22 2.87
3568 3632 3.887716 ACTTTCTGCATGCAAAGTCTTCT 59.112 39.130 25.28 8.60 38.22 2.85
3569 3633 3.909776 TTCTGCATGCAAAGTCTTCTG 57.090 42.857 22.88 6.65 0.00 3.02
3570 3634 1.538512 TCTGCATGCAAAGTCTTCTGC 59.461 47.619 22.88 10.85 39.09 4.26
3571 3635 1.540267 CTGCATGCAAAGTCTTCTGCT 59.460 47.619 22.88 4.70 39.38 4.24
3572 3636 1.538512 TGCATGCAAAGTCTTCTGCTC 59.461 47.619 20.30 9.05 39.38 4.26
3573 3637 1.538512 GCATGCAAAGTCTTCTGCTCA 59.461 47.619 14.21 3.34 39.38 4.26
3574 3638 2.667724 GCATGCAAAGTCTTCTGCTCAC 60.668 50.000 14.21 6.24 39.38 3.51
3575 3639 2.330440 TGCAAAGTCTTCTGCTCACA 57.670 45.000 15.87 0.24 39.38 3.58
3577 3641 2.355756 TGCAAAGTCTTCTGCTCACAAC 59.644 45.455 15.87 0.00 39.38 3.32
3579 3643 3.809832 GCAAAGTCTTCTGCTCACAACTA 59.190 43.478 10.62 0.00 35.62 2.24
3580 3644 4.084118 GCAAAGTCTTCTGCTCACAACTAG 60.084 45.833 10.62 0.00 35.62 2.57
3581 3645 5.292765 CAAAGTCTTCTGCTCACAACTAGA 58.707 41.667 0.00 0.00 0.00 2.43
3582 3646 5.537300 AAGTCTTCTGCTCACAACTAGAA 57.463 39.130 0.00 0.00 0.00 2.10
3583 3647 5.736951 AGTCTTCTGCTCACAACTAGAAT 57.263 39.130 0.00 0.00 0.00 2.40
3585 3649 5.480073 AGTCTTCTGCTCACAACTAGAATCT 59.520 40.000 0.00 0.00 0.00 2.40
3586 3650 6.014669 AGTCTTCTGCTCACAACTAGAATCTT 60.015 38.462 0.00 0.00 0.00 2.40
3587 3651 6.310224 GTCTTCTGCTCACAACTAGAATCTTC 59.690 42.308 0.00 0.00 0.00 2.87
3588 3652 5.728637 TCTGCTCACAACTAGAATCTTCA 57.271 39.130 0.00 0.00 0.00 3.02
3592 3656 4.991056 GCTCACAACTAGAATCTTCACACA 59.009 41.667 0.00 0.00 0.00 3.72
3594 3658 6.813649 GCTCACAACTAGAATCTTCACACATA 59.186 38.462 0.00 0.00 0.00 2.29
3597 3661 9.371136 TCACAACTAGAATCTTCACACATAATC 57.629 33.333 0.00 0.00 0.00 1.75
3598 3662 9.154847 CACAACTAGAATCTTCACACATAATCA 57.845 33.333 0.00 0.00 0.00 2.57
3599 3663 9.725019 ACAACTAGAATCTTCACACATAATCAA 57.275 29.630 0.00 0.00 0.00 2.57
3608 3672 9.685276 ATCTTCACACATAATCAATTTCTACCA 57.315 29.630 0.00 0.00 0.00 3.25
3612 3676 8.190122 TCACACATAATCAATTTCTACCATTGC 58.810 33.333 0.00 0.00 32.49 3.56
3613 3677 8.192774 CACACATAATCAATTTCTACCATTGCT 58.807 33.333 0.00 0.00 32.49 3.91
3614 3678 9.407380 ACACATAATCAATTTCTACCATTGCTA 57.593 29.630 0.00 0.00 32.49 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.741326 TGTCGTCTGAGGCTGCTATC 59.259 55.000 0.00 0.00 0.00 2.08
106 107 4.664688 AACATTCAAGATCCTTCCAGGT 57.335 40.909 0.00 0.00 36.53 4.00
187 193 0.784495 ACTACTCTGACAGGACCCCA 59.216 55.000 1.81 0.00 0.00 4.96
188 194 1.550976 CAACTACTCTGACAGGACCCC 59.449 57.143 1.81 0.00 0.00 4.95
236 242 8.866956 CAAAAGAATGGAAATTTACAGATCTGC 58.133 33.333 22.83 4.20 0.00 4.26
321 335 8.668510 TCAAAGAGAGAAGCCATCATAAATAC 57.331 34.615 0.00 0.00 0.00 1.89
349 363 7.849804 TCTGCAGATCTTAAGTGGAAAATAC 57.150 36.000 13.74 0.00 0.00 1.89
443 466 6.038271 ACTTGGAAAATAATCAGGCGACATAC 59.962 38.462 0.00 0.00 0.00 2.39
474 497 5.284079 ACATGTGAAGCAACAACAGAATTC 58.716 37.500 0.00 0.00 32.81 2.17
662 685 3.760738 TGCATCAGTCCATTTGGTGTTA 58.239 40.909 0.00 0.00 36.34 2.41
664 687 2.291209 TGCATCAGTCCATTTGGTGT 57.709 45.000 0.00 0.00 36.34 4.16
693 724 6.092807 GTGAAACCTAAAGAGATACCTGCTTG 59.907 42.308 0.00 0.00 0.00 4.01
694 725 6.013293 AGTGAAACCTAAAGAGATACCTGCTT 60.013 38.462 0.00 0.00 37.80 3.91
695 726 5.485708 AGTGAAACCTAAAGAGATACCTGCT 59.514 40.000 0.00 0.00 37.80 4.24
696 727 5.582665 CAGTGAAACCTAAAGAGATACCTGC 59.417 44.000 0.00 0.00 37.80 4.85
697 728 6.702329 ACAGTGAAACCTAAAGAGATACCTG 58.298 40.000 0.00 0.00 37.80 4.00
698 729 6.936968 ACAGTGAAACCTAAAGAGATACCT 57.063 37.500 0.00 0.00 37.80 3.08
699 730 9.099454 CATAACAGTGAAACCTAAAGAGATACC 57.901 37.037 0.00 0.00 37.80 2.73
700 731 9.654663 ACATAACAGTGAAACCTAAAGAGATAC 57.345 33.333 0.00 0.00 37.80 2.24
702 733 9.220767 GAACATAACAGTGAAACCTAAAGAGAT 57.779 33.333 0.00 0.00 37.80 2.75
703 734 8.429641 AGAACATAACAGTGAAACCTAAAGAGA 58.570 33.333 0.00 0.00 37.80 3.10
704 735 8.608844 AGAACATAACAGTGAAACCTAAAGAG 57.391 34.615 0.00 0.00 37.80 2.85
705 736 8.974060 AAGAACATAACAGTGAAACCTAAAGA 57.026 30.769 0.00 0.00 37.80 2.52
706 737 9.057089 AGAAGAACATAACAGTGAAACCTAAAG 57.943 33.333 0.00 0.00 37.80 1.85
707 738 8.836413 CAGAAGAACATAACAGTGAAACCTAAA 58.164 33.333 0.00 0.00 37.80 1.85
708 739 8.208224 TCAGAAGAACATAACAGTGAAACCTAA 58.792 33.333 0.00 0.00 37.80 2.69
742 773 8.043113 AGTATAGAAAACAGAGCATGATGAACA 58.957 33.333 0.00 0.00 0.00 3.18
764 795 5.497474 ACACGCCCAAAGAAAATCTAGTAT 58.503 37.500 0.00 0.00 0.00 2.12
765 796 4.901868 ACACGCCCAAAGAAAATCTAGTA 58.098 39.130 0.00 0.00 0.00 1.82
789 820 7.881775 ACCTTTTCAGAACTCATAACAGTTT 57.118 32.000 0.00 0.00 36.71 2.66
792 823 8.553459 ACATACCTTTTCAGAACTCATAACAG 57.447 34.615 0.00 0.00 0.00 3.16
798 829 6.183361 TGGAGAACATACCTTTTCAGAACTCA 60.183 38.462 0.00 0.00 0.00 3.41
804 835 7.337689 TCAATCATGGAGAACATACCTTTTCAG 59.662 37.037 0.00 0.00 37.84 3.02
834 869 6.374333 TGGTAGACAAATATTGCAAAGGAGAC 59.626 38.462 1.71 0.00 0.00 3.36
844 879 9.965824 AAGACAAAAAGTGGTAGACAAATATTG 57.034 29.630 0.00 0.00 0.00 1.90
852 887 4.457466 TCCCAAGACAAAAAGTGGTAGAC 58.543 43.478 0.00 0.00 0.00 2.59
856 891 4.583073 GTGTATCCCAAGACAAAAAGTGGT 59.417 41.667 0.00 0.00 0.00 4.16
858 893 6.391227 AAGTGTATCCCAAGACAAAAAGTG 57.609 37.500 0.00 0.00 0.00 3.16
870 906 4.822896 GGTTGTTGTGTAAAGTGTATCCCA 59.177 41.667 0.00 0.00 0.00 4.37
898 936 2.317040 AGCAGCTACGCCCTAGAATAA 58.683 47.619 0.00 0.00 0.00 1.40
1009 1055 3.196685 ACACTCCCTGAGTTGCTTCTATC 59.803 47.826 0.00 0.00 41.37 2.08
1043 1089 2.092592 TGCAATGCTGAGATCCTCACAT 60.093 45.455 6.82 0.00 35.39 3.21
1163 1209 4.379243 AGGAACCGCGTGCCTGAG 62.379 66.667 4.92 0.00 40.73 3.35
1171 1217 2.811317 GTCTGCAGAGGAACCGCG 60.811 66.667 18.89 0.00 0.00 6.46
1174 1220 3.265791 CTTACATGTCTGCAGAGGAACC 58.734 50.000 18.89 5.39 0.00 3.62
1200 1246 5.728471 ACACACCAAAATGTCAATGAAACA 58.272 33.333 0.00 0.00 0.00 2.83
1204 1250 3.879892 TCGACACACCAAAATGTCAATGA 59.120 39.130 5.33 0.00 44.54 2.57
1206 1252 4.518590 TCATCGACACACCAAAATGTCAAT 59.481 37.500 5.33 0.00 44.54 2.57
1219 1265 2.541794 GCGCTCTCTATTCATCGACACA 60.542 50.000 0.00 0.00 0.00 3.72
1254 1302 5.480422 AGACCCCAAAATGTGATTTTCCTAC 59.520 40.000 0.00 0.00 40.27 3.18
1263 1311 4.099266 CAGAAACAAGACCCCAAAATGTGA 59.901 41.667 0.00 0.00 0.00 3.58
1296 1344 9.243637 GCAAACACAAAATAGAGTAAATGAACA 57.756 29.630 0.00 0.00 0.00 3.18
1478 1527 3.429822 GGCAATGATGGTGATGTTTGAGG 60.430 47.826 0.00 0.00 0.00 3.86
1523 1572 2.362503 TCCATGACCGGCGACTCT 60.363 61.111 9.30 0.00 0.00 3.24
1527 1576 2.443952 ATCCTCCATGACCGGCGA 60.444 61.111 9.30 0.00 0.00 5.54
1586 1635 1.227556 ACCAACACCTCTGTGACGC 60.228 57.895 0.00 0.00 45.76 5.19
1587 1636 0.179084 ACACCAACACCTCTGTGACG 60.179 55.000 0.00 0.00 45.76 4.35
1631 1680 2.749839 CGGCCTTGCATTCCGGAA 60.750 61.111 21.37 21.37 39.52 4.30
1637 1686 2.042831 GCACTCTCGGCCTTGCATT 61.043 57.895 0.00 0.00 34.97 3.56
1662 1711 1.734477 CACTGAGAAGACCACCGCG 60.734 63.158 0.00 0.00 0.00 6.46
1689 1738 4.595031 TGGAACATGTTGCCTGCA 57.405 50.000 25.01 6.50 0.00 4.41
1838 1887 1.159285 CATGTCAATGACAGCGTGGT 58.841 50.000 21.23 0.49 46.04 4.16
1875 1924 0.179062 CATGAGGGTAGCAGAGCACC 60.179 60.000 0.00 0.00 0.00 5.01
1971 2020 3.294493 GCAAGGCGGGCAAAGTCA 61.294 61.111 3.78 0.00 0.00 3.41
2001 2050 1.570347 CCGTATCTCTCTCGAGGCCG 61.570 65.000 13.56 1.70 37.86 6.13
2358 2407 1.905512 GTAACCGAGCCCCATGTCT 59.094 57.895 0.00 0.00 0.00 3.41
2392 2441 4.671590 TGTGCTCTCCCCGACGGA 62.672 66.667 17.49 0.00 38.83 4.69
2479 2528 2.049063 GAGCGTGACGTTCTGGCT 60.049 61.111 14.55 0.00 34.45 4.75
2564 2613 2.352388 TGTAAACAATCTACGCCCTGC 58.648 47.619 0.00 0.00 0.00 4.85
2593 2642 6.401047 ACTGCAGTAGTAAAACACTAGACA 57.599 37.500 20.16 0.00 40.48 3.41
2640 2689 1.511850 CGATCCAACAGCTCACACAA 58.488 50.000 0.00 0.00 0.00 3.33
2674 2723 1.259609 TGGCCTTCAAATCTGCCTTG 58.740 50.000 3.32 0.00 44.32 3.61
2681 2730 3.002759 GTCGCTAGATTGGCCTTCAAATC 59.997 47.826 3.32 4.71 39.05 2.17
2685 2734 1.195115 AGTCGCTAGATTGGCCTTCA 58.805 50.000 3.32 0.00 0.00 3.02
2692 2741 5.968848 GTGAGAGAGTTTAGTCGCTAGATTG 59.031 44.000 0.00 0.00 0.00 2.67
2700 2749 5.365403 AGTTGAGTGAGAGAGTTTAGTCG 57.635 43.478 0.00 0.00 0.00 4.18
2732 2781 6.821665 CCGTTTCACTTCCTCTTATGGAATTA 59.178 38.462 0.00 0.00 44.17 1.40
2872 2924 4.581824 ACAGCTCATAACAATTGCCCATAG 59.418 41.667 5.05 0.00 0.00 2.23
2873 2925 4.338964 CACAGCTCATAACAATTGCCCATA 59.661 41.667 5.05 0.00 0.00 2.74
2881 2933 6.040842 ACACCTTTTTCACAGCTCATAACAAT 59.959 34.615 0.00 0.00 0.00 2.71
2919 2971 5.066505 ACAGCAGAGAAATCTTTCAAAACGT 59.933 36.000 5.53 0.00 39.61 3.99
2925 2977 5.824624 ACAGAAACAGCAGAGAAATCTTTCA 59.175 36.000 5.53 0.00 39.61 2.69
2951 3005 7.506114 TGGTTACATATTGAAGTGTATCCTCC 58.494 38.462 15.55 8.45 39.63 4.30
3057 3111 3.924114 TTGTGGTTGAAAGTCTCCAGA 57.076 42.857 0.00 0.00 0.00 3.86
3074 3128 3.690422 CGTACCATTATTGCGCATTTGT 58.310 40.909 12.75 5.83 0.00 2.83
3082 3136 1.675552 ACCAGGCGTACCATTATTGC 58.324 50.000 0.00 0.00 39.06 3.56
3099 3153 1.004394 CCTTCTGGGTTGGTAGGAACC 59.996 57.143 0.00 0.00 46.98 3.62
3170 3224 6.599244 GGATGTCAGTGTAAAATTGGATGAGA 59.401 38.462 0.00 0.00 0.00 3.27
3191 3253 8.986991 ACTAAGGCCTAGAATAGATTATGGATG 58.013 37.037 5.16 0.00 42.77 3.51
3194 3256 9.660180 GAAACTAAGGCCTAGAATAGATTATGG 57.340 37.037 5.16 0.00 42.77 2.74
3220 3284 1.839994 TGCTGGGAGAAACAGGATAGG 59.160 52.381 0.00 0.00 36.48 2.57
3221 3285 3.634397 TTGCTGGGAGAAACAGGATAG 57.366 47.619 0.00 0.00 36.18 2.08
3231 3295 4.098914 ACAAGTAACATTTGCTGGGAGA 57.901 40.909 0.00 0.00 0.00 3.71
3232 3296 4.278170 TGAACAAGTAACATTTGCTGGGAG 59.722 41.667 0.00 0.00 0.00 4.30
3234 3298 4.037923 ACTGAACAAGTAACATTTGCTGGG 59.962 41.667 0.00 0.00 37.36 4.45
3235 3299 4.977963 CACTGAACAAGTAACATTTGCTGG 59.022 41.667 0.00 0.00 36.83 4.85
3237 3301 5.822519 TCTCACTGAACAAGTAACATTTGCT 59.177 36.000 0.00 0.00 36.83 3.91
3238 3302 6.060028 TCTCACTGAACAAGTAACATTTGC 57.940 37.500 0.00 0.00 36.83 3.68
3240 3304 7.807977 ACATCTCACTGAACAAGTAACATTT 57.192 32.000 0.00 0.00 36.83 2.32
3242 3306 7.255242 CCAAACATCTCACTGAACAAGTAACAT 60.255 37.037 0.00 0.00 36.83 2.71
3243 3307 6.038161 CCAAACATCTCACTGAACAAGTAACA 59.962 38.462 0.00 0.00 36.83 2.41
3244 3308 6.260050 TCCAAACATCTCACTGAACAAGTAAC 59.740 38.462 0.00 0.00 36.83 2.50
3245 3309 6.353323 TCCAAACATCTCACTGAACAAGTAA 58.647 36.000 0.00 0.00 36.83 2.24
3246 3310 5.924356 TCCAAACATCTCACTGAACAAGTA 58.076 37.500 0.00 0.00 36.83 2.24
3248 3312 4.818546 ACTCCAAACATCTCACTGAACAAG 59.181 41.667 0.00 0.00 0.00 3.16
3249 3313 4.780815 ACTCCAAACATCTCACTGAACAA 58.219 39.130 0.00 0.00 0.00 2.83
3250 3314 4.422073 ACTCCAAACATCTCACTGAACA 57.578 40.909 0.00 0.00 0.00 3.18
3251 3315 5.506317 CCAAACTCCAAACATCTCACTGAAC 60.506 44.000 0.00 0.00 0.00 3.18
3253 3317 4.136796 CCAAACTCCAAACATCTCACTGA 58.863 43.478 0.00 0.00 0.00 3.41
3254 3318 4.023707 GTCCAAACTCCAAACATCTCACTG 60.024 45.833 0.00 0.00 0.00 3.66
3255 3319 4.137543 GTCCAAACTCCAAACATCTCACT 58.862 43.478 0.00 0.00 0.00 3.41
3256 3320 4.137543 AGTCCAAACTCCAAACATCTCAC 58.862 43.478 0.00 0.00 0.00 3.51
3257 3321 4.437682 AGTCCAAACTCCAAACATCTCA 57.562 40.909 0.00 0.00 0.00 3.27
3259 3323 7.918076 TCTATTAGTCCAAACTCCAAACATCT 58.082 34.615 0.00 0.00 36.92 2.90
3260 3324 7.201652 GCTCTATTAGTCCAAACTCCAAACATC 60.202 40.741 0.00 0.00 36.92 3.06
3261 3325 6.599638 GCTCTATTAGTCCAAACTCCAAACAT 59.400 38.462 0.00 0.00 36.92 2.71
3262 3326 5.938125 GCTCTATTAGTCCAAACTCCAAACA 59.062 40.000 0.00 0.00 36.92 2.83
3263 3327 5.938125 TGCTCTATTAGTCCAAACTCCAAAC 59.062 40.000 0.00 0.00 36.92 2.93
3265 3329 5.338381 CCTGCTCTATTAGTCCAAACTCCAA 60.338 44.000 0.00 0.00 36.92 3.53
3266 3330 4.162320 CCTGCTCTATTAGTCCAAACTCCA 59.838 45.833 0.00 0.00 36.92 3.86
3267 3331 4.443598 CCCTGCTCTATTAGTCCAAACTCC 60.444 50.000 0.00 0.00 36.92 3.85
3268 3332 4.443598 CCCCTGCTCTATTAGTCCAAACTC 60.444 50.000 0.00 0.00 36.92 3.01
3269 3333 3.456277 CCCCTGCTCTATTAGTCCAAACT 59.544 47.826 0.00 0.00 39.66 2.66
3270 3334 3.433740 CCCCCTGCTCTATTAGTCCAAAC 60.434 52.174 0.00 0.00 0.00 2.93
3271 3335 2.777692 CCCCCTGCTCTATTAGTCCAAA 59.222 50.000 0.00 0.00 0.00 3.28
3273 3337 1.578703 TCCCCCTGCTCTATTAGTCCA 59.421 52.381 0.00 0.00 0.00 4.02
3274 3338 2.158295 TCTCCCCCTGCTCTATTAGTCC 60.158 54.545 0.00 0.00 0.00 3.85
3275 3339 3.246416 TCTCCCCCTGCTCTATTAGTC 57.754 52.381 0.00 0.00 0.00 2.59
3276 3340 3.582164 CTTCTCCCCCTGCTCTATTAGT 58.418 50.000 0.00 0.00 0.00 2.24
3278 3342 2.522705 TCCTTCTCCCCCTGCTCTATTA 59.477 50.000 0.00 0.00 0.00 0.98
3279 3343 1.295292 TCCTTCTCCCCCTGCTCTATT 59.705 52.381 0.00 0.00 0.00 1.73
3280 3344 0.944999 TCCTTCTCCCCCTGCTCTAT 59.055 55.000 0.00 0.00 0.00 1.98
3281 3345 0.944999 ATCCTTCTCCCCCTGCTCTA 59.055 55.000 0.00 0.00 0.00 2.43
3282 3346 0.944999 TATCCTTCTCCCCCTGCTCT 59.055 55.000 0.00 0.00 0.00 4.09
3283 3347 1.052617 GTATCCTTCTCCCCCTGCTC 58.947 60.000 0.00 0.00 0.00 4.26
3285 3349 1.141858 CTTGTATCCTTCTCCCCCTGC 59.858 57.143 0.00 0.00 0.00 4.85
3286 3350 1.141858 GCTTGTATCCTTCTCCCCCTG 59.858 57.143 0.00 0.00 0.00 4.45
3288 3352 1.213296 TGCTTGTATCCTTCTCCCCC 58.787 55.000 0.00 0.00 0.00 5.40
3289 3353 4.917906 ATATGCTTGTATCCTTCTCCCC 57.082 45.455 0.00 0.00 0.00 4.81
3290 3354 5.877564 GCTTATATGCTTGTATCCTTCTCCC 59.122 44.000 3.43 0.00 0.00 4.30
3293 3357 6.939163 CCTTGCTTATATGCTTGTATCCTTCT 59.061 38.462 11.48 0.00 0.00 2.85
3295 3359 6.841601 TCCTTGCTTATATGCTTGTATCCTT 58.158 36.000 11.48 0.00 0.00 3.36
3296 3360 6.043706 ACTCCTTGCTTATATGCTTGTATCCT 59.956 38.462 11.48 0.00 0.00 3.24
3297 3361 6.234177 ACTCCTTGCTTATATGCTTGTATCC 58.766 40.000 11.48 0.00 0.00 2.59
3298 3362 6.090088 CGACTCCTTGCTTATATGCTTGTATC 59.910 42.308 11.48 2.93 0.00 2.24
3299 3363 5.928839 CGACTCCTTGCTTATATGCTTGTAT 59.071 40.000 11.48 0.00 0.00 2.29
3300 3364 5.289595 CGACTCCTTGCTTATATGCTTGTA 58.710 41.667 11.48 0.00 0.00 2.41
3301 3365 4.122776 CGACTCCTTGCTTATATGCTTGT 58.877 43.478 11.48 4.01 0.00 3.16
3302 3366 3.059325 GCGACTCCTTGCTTATATGCTTG 60.059 47.826 11.48 4.79 0.00 4.01
3303 3367 3.134458 GCGACTCCTTGCTTATATGCTT 58.866 45.455 11.48 0.00 0.00 3.91
3304 3368 2.103094 TGCGACTCCTTGCTTATATGCT 59.897 45.455 11.48 0.00 0.00 3.79
3306 3370 4.612259 GCAATGCGACTCCTTGCTTATATG 60.612 45.833 0.00 0.00 41.52 1.78
3307 3371 3.499918 GCAATGCGACTCCTTGCTTATAT 59.500 43.478 0.00 0.00 41.52 0.86
3310 3374 1.086696 GCAATGCGACTCCTTGCTTA 58.913 50.000 0.00 0.00 41.52 3.09
3311 3375 0.890542 TGCAATGCGACTCCTTGCTT 60.891 50.000 0.00 0.00 44.29 3.91
3312 3376 0.890542 TTGCAATGCGACTCCTTGCT 60.891 50.000 0.00 0.00 44.29 3.91
3313 3377 0.730494 GTTGCAATGCGACTCCTTGC 60.730 55.000 17.81 2.03 44.25 4.01
3320 3384 0.110056 CACAGGAGTTGCAATGCGAC 60.110 55.000 17.43 17.43 42.78 5.19
3321 3385 0.534877 ACACAGGAGTTGCAATGCGA 60.535 50.000 0.59 0.00 0.00 5.10
3322 3386 0.386352 CACACAGGAGTTGCAATGCG 60.386 55.000 0.59 0.00 0.00 4.73
3323 3387 0.038892 CCACACAGGAGTTGCAATGC 60.039 55.000 0.59 0.00 41.22 3.56
3324 3388 1.608055 TCCACACAGGAGTTGCAATG 58.392 50.000 0.59 0.00 43.07 2.82
3334 3398 5.882000 TCATCAATTAACTGATCCACACAGG 59.118 40.000 0.00 0.00 39.38 4.00
3335 3399 6.820152 TCTCATCAATTAACTGATCCACACAG 59.180 38.462 0.00 0.00 40.68 3.66
3337 3401 7.798596 ATCTCATCAATTAACTGATCCACAC 57.201 36.000 0.00 0.00 33.66 3.82
3350 3414 9.362539 GCAAACACAAAGATTATCTCATCAATT 57.637 29.630 0.00 0.00 0.00 2.32
3351 3415 7.977853 GGCAAACACAAAGATTATCTCATCAAT 59.022 33.333 0.00 0.00 0.00 2.57
3354 3418 6.855836 TGGCAAACACAAAGATTATCTCATC 58.144 36.000 0.00 0.00 0.00 2.92
3370 3434 3.756434 GCCTAATTCTAGTGTGGCAAACA 59.244 43.478 11.05 0.00 40.04 2.83
3371 3435 3.128764 GGCCTAATTCTAGTGTGGCAAAC 59.871 47.826 0.00 0.00 41.86 2.93
3373 3437 2.679639 CGGCCTAATTCTAGTGTGGCAA 60.680 50.000 0.00 0.00 41.86 4.52
3375 3439 1.138266 TCGGCCTAATTCTAGTGTGGC 59.862 52.381 0.00 0.00 39.61 5.01
3376 3440 2.167693 TGTCGGCCTAATTCTAGTGTGG 59.832 50.000 0.00 0.00 0.00 4.17
3377 3441 3.520290 TGTCGGCCTAATTCTAGTGTG 57.480 47.619 0.00 0.00 0.00 3.82
3378 3442 3.369157 GGTTGTCGGCCTAATTCTAGTGT 60.369 47.826 0.00 0.00 0.00 3.55
3379 3443 3.118738 AGGTTGTCGGCCTAATTCTAGTG 60.119 47.826 0.00 0.00 33.97 2.74
3380 3444 3.105283 AGGTTGTCGGCCTAATTCTAGT 58.895 45.455 0.00 0.00 33.97 2.57
3381 3445 3.821421 AGGTTGTCGGCCTAATTCTAG 57.179 47.619 0.00 0.00 33.97 2.43
3383 3447 3.081804 CAAAGGTTGTCGGCCTAATTCT 58.918 45.455 0.00 0.00 34.81 2.40
3384 3448 2.817844 ACAAAGGTTGTCGGCCTAATTC 59.182 45.455 0.00 0.00 40.56 2.17
3385 3449 2.556622 CACAAAGGTTGTCGGCCTAATT 59.443 45.455 0.00 0.00 43.23 1.40
3386 3450 2.159382 CACAAAGGTTGTCGGCCTAAT 58.841 47.619 0.00 0.00 43.23 1.73
3389 3453 0.470766 TACACAAAGGTTGTCGGCCT 59.529 50.000 0.00 0.00 43.23 5.19
3390 3454 0.589708 GTACACAAAGGTTGTCGGCC 59.410 55.000 0.00 0.00 43.23 6.13
3391 3455 1.301423 TGTACACAAAGGTTGTCGGC 58.699 50.000 0.00 0.00 43.23 5.54
3392 3456 3.135225 TCATGTACACAAAGGTTGTCGG 58.865 45.455 0.00 0.00 43.23 4.79
3395 3459 6.872920 ACATTTTCATGTACACAAAGGTTGT 58.127 32.000 0.00 3.76 42.24 3.32
3396 3460 7.706179 AGAACATTTTCATGTACACAAAGGTTG 59.294 33.333 22.01 14.15 43.34 3.77
3397 3461 7.706179 CAGAACATTTTCATGTACACAAAGGTT 59.294 33.333 19.17 19.17 43.34 3.50
3398 3462 7.202526 CAGAACATTTTCATGTACACAAAGGT 58.797 34.615 0.00 3.15 43.34 3.50
3399 3463 6.144402 GCAGAACATTTTCATGTACACAAAGG 59.856 38.462 0.00 2.50 43.34 3.11
3400 3464 6.144402 GGCAGAACATTTTCATGTACACAAAG 59.856 38.462 0.00 0.00 43.34 2.77
3401 3465 5.982516 GGCAGAACATTTTCATGTACACAAA 59.017 36.000 0.00 0.00 43.34 2.83
3402 3466 5.508825 GGGCAGAACATTTTCATGTACACAA 60.509 40.000 0.00 0.00 43.34 3.33
3404 3468 4.485163 GGGCAGAACATTTTCATGTACAC 58.515 43.478 0.00 0.00 43.34 2.90
3408 3472 2.238521 ACGGGCAGAACATTTTCATGT 58.761 42.857 0.00 0.00 46.34 3.21
3409 3473 3.244976 GAACGGGCAGAACATTTTCATG 58.755 45.455 0.00 0.00 33.72 3.07
3410 3474 2.231235 GGAACGGGCAGAACATTTTCAT 59.769 45.455 0.00 0.00 33.72 2.57
3411 3475 1.611491 GGAACGGGCAGAACATTTTCA 59.389 47.619 0.00 0.00 33.72 2.69
3412 3476 1.611491 TGGAACGGGCAGAACATTTTC 59.389 47.619 0.00 0.00 0.00 2.29
3413 3477 1.698506 TGGAACGGGCAGAACATTTT 58.301 45.000 0.00 0.00 0.00 1.82
3414 3478 1.698506 TTGGAACGGGCAGAACATTT 58.301 45.000 0.00 0.00 0.00 2.32
3415 3479 1.923356 ATTGGAACGGGCAGAACATT 58.077 45.000 0.00 0.00 0.00 2.71
3418 3482 2.752903 ACATAATTGGAACGGGCAGAAC 59.247 45.455 0.00 0.00 0.00 3.01
3419 3483 3.080300 ACATAATTGGAACGGGCAGAA 57.920 42.857 0.00 0.00 0.00 3.02
3420 3484 2.799126 ACATAATTGGAACGGGCAGA 57.201 45.000 0.00 0.00 0.00 4.26
3423 3487 3.059188 CGATGTACATAATTGGAACGGGC 60.059 47.826 8.71 0.00 0.00 6.13
3424 3488 4.124238 ACGATGTACATAATTGGAACGGG 58.876 43.478 8.71 0.00 0.00 5.28
3425 3489 7.416154 AATACGATGTACATAATTGGAACGG 57.584 36.000 8.71 0.00 0.00 4.44
3452 3516 8.243426 GCTGAGAATAACGAGAATCTCTCATAT 58.757 37.037 8.77 1.79 43.55 1.78
3453 3517 7.308891 GGCTGAGAATAACGAGAATCTCTCATA 60.309 40.741 8.77 0.00 43.55 2.15
3454 3518 6.446318 GCTGAGAATAACGAGAATCTCTCAT 58.554 40.000 8.77 0.00 43.55 2.90
3455 3519 5.221145 GGCTGAGAATAACGAGAATCTCTCA 60.221 44.000 8.77 2.70 43.55 3.27
3458 3522 5.195001 AGGCTGAGAATAACGAGAATCTC 57.805 43.478 0.00 0.00 38.98 2.75
3460 3524 4.025313 GCAAGGCTGAGAATAACGAGAATC 60.025 45.833 0.00 0.00 0.00 2.52
3462 3526 3.262420 GCAAGGCTGAGAATAACGAGAA 58.738 45.455 0.00 0.00 0.00 2.87
3463 3527 2.233676 TGCAAGGCTGAGAATAACGAGA 59.766 45.455 0.00 0.00 0.00 4.04
3464 3528 2.621338 TGCAAGGCTGAGAATAACGAG 58.379 47.619 0.00 0.00 0.00 4.18
3465 3529 2.760634 TGCAAGGCTGAGAATAACGA 57.239 45.000 0.00 0.00 0.00 3.85
3466 3530 3.624861 AGATTGCAAGGCTGAGAATAACG 59.375 43.478 4.94 0.00 0.00 3.18
3467 3531 4.637534 TGAGATTGCAAGGCTGAGAATAAC 59.362 41.667 4.94 0.00 0.00 1.89
3468 3532 4.847198 TGAGATTGCAAGGCTGAGAATAA 58.153 39.130 4.94 0.00 0.00 1.40
3471 3535 2.303890 TCTGAGATTGCAAGGCTGAGAA 59.696 45.455 15.46 3.88 0.00 2.87
3472 3536 1.904537 TCTGAGATTGCAAGGCTGAGA 59.095 47.619 14.33 14.33 0.00 3.27
3474 3538 1.339438 GGTCTGAGATTGCAAGGCTGA 60.339 52.381 4.94 3.59 0.00 4.26
3475 3539 1.093159 GGTCTGAGATTGCAAGGCTG 58.907 55.000 4.94 1.18 0.00 4.85
3476 3540 0.034670 GGGTCTGAGATTGCAAGGCT 60.035 55.000 4.94 4.65 0.00 4.58
3477 3541 0.034670 AGGGTCTGAGATTGCAAGGC 60.035 55.000 4.94 0.00 0.00 4.35
3478 3542 1.741732 CGAGGGTCTGAGATTGCAAGG 60.742 57.143 4.94 0.00 0.00 3.61
3479 3543 1.205655 TCGAGGGTCTGAGATTGCAAG 59.794 52.381 4.94 0.00 0.00 4.01
3481 3545 1.266178 TTCGAGGGTCTGAGATTGCA 58.734 50.000 0.00 0.00 0.00 4.08
3483 3547 2.898705 CCTTTCGAGGGTCTGAGATTG 58.101 52.381 0.00 0.00 0.00 2.67
3484 3548 1.208293 GCCTTTCGAGGGTCTGAGATT 59.792 52.381 8.05 0.00 0.00 2.40
3485 3549 0.827368 GCCTTTCGAGGGTCTGAGAT 59.173 55.000 8.05 0.00 0.00 2.75
3486 3550 0.251832 AGCCTTTCGAGGGTCTGAGA 60.252 55.000 8.05 0.00 33.99 3.27
3487 3551 2.281830 AGCCTTTCGAGGGTCTGAG 58.718 57.895 8.05 0.00 33.99 3.35
3488 3552 4.541213 AGCCTTTCGAGGGTCTGA 57.459 55.556 8.05 0.00 33.99 3.27
3493 3557 7.979444 TTATTATTATTGAGCCTTTCGAGGG 57.021 36.000 2.61 2.61 0.00 4.30
3496 3560 9.677567 GCAAATTATTATTATTGAGCCTTTCGA 57.322 29.630 0.00 0.00 0.00 3.71
3497 3561 9.683069 AGCAAATTATTATTATTGAGCCTTTCG 57.317 29.630 0.00 0.00 0.00 3.46
3533 3597 9.928236 TGCATGCAGAAAGTTAATTTTTAAAAC 57.072 25.926 18.46 0.00 0.00 2.43
3539 3603 7.712205 AGACTTTGCATGCAGAAAGTTAATTTT 59.288 29.630 29.25 12.19 41.43 1.82
3542 3606 6.336842 AGACTTTGCATGCAGAAAGTTAAT 57.663 33.333 29.25 19.31 41.43 1.40
3543 3607 5.772825 AGACTTTGCATGCAGAAAGTTAA 57.227 34.783 29.25 16.23 41.43 2.01
3544 3608 5.532406 AGAAGACTTTGCATGCAGAAAGTTA 59.468 36.000 29.25 10.12 41.43 2.24
3545 3609 4.340381 AGAAGACTTTGCATGCAGAAAGTT 59.660 37.500 29.25 19.26 41.43 2.66
3546 3610 3.887716 AGAAGACTTTGCATGCAGAAAGT 59.112 39.130 29.12 29.12 43.50 2.66
3548 3612 3.551454 GCAGAAGACTTTGCATGCAGAAA 60.551 43.478 21.50 12.50 40.02 2.52
3549 3613 2.030540 GCAGAAGACTTTGCATGCAGAA 60.031 45.455 21.50 16.12 40.02 3.02
3550 3614 1.538512 GCAGAAGACTTTGCATGCAGA 59.461 47.619 21.50 16.08 40.02 4.26
3551 3615 1.540267 AGCAGAAGACTTTGCATGCAG 59.460 47.619 21.50 13.01 42.67 4.41
3553 3617 1.538512 TGAGCAGAAGACTTTGCATGC 59.461 47.619 11.82 11.82 42.67 4.06
3554 3618 2.551032 TGTGAGCAGAAGACTTTGCATG 59.449 45.455 18.34 0.00 42.67 4.06
3555 3619 2.854963 TGTGAGCAGAAGACTTTGCAT 58.145 42.857 18.34 8.48 42.67 3.96
3556 3620 2.330440 TGTGAGCAGAAGACTTTGCA 57.670 45.000 18.34 0.00 42.67 4.08
3557 3621 2.615912 AGTTGTGAGCAGAAGACTTTGC 59.384 45.455 11.92 11.92 40.57 3.68
3558 3622 5.292765 TCTAGTTGTGAGCAGAAGACTTTG 58.707 41.667 0.00 0.00 0.00 2.77
3559 3623 5.537300 TCTAGTTGTGAGCAGAAGACTTT 57.463 39.130 0.00 0.00 0.00 2.66
3560 3624 5.537300 TTCTAGTTGTGAGCAGAAGACTT 57.463 39.130 0.00 0.00 0.00 3.01
3562 3626 5.719173 AGATTCTAGTTGTGAGCAGAAGAC 58.281 41.667 0.00 0.00 31.00 3.01
3563 3627 5.991933 AGATTCTAGTTGTGAGCAGAAGA 57.008 39.130 0.00 0.00 31.00 2.87
3564 3628 6.090628 GTGAAGATTCTAGTTGTGAGCAGAAG 59.909 42.308 0.00 0.00 31.00 2.85
3565 3629 5.928839 GTGAAGATTCTAGTTGTGAGCAGAA 59.071 40.000 0.00 0.00 0.00 3.02
3567 3631 5.119898 GTGTGAAGATTCTAGTTGTGAGCAG 59.880 44.000 0.00 0.00 0.00 4.24
3568 3632 4.991056 GTGTGAAGATTCTAGTTGTGAGCA 59.009 41.667 0.00 0.00 0.00 4.26
3569 3633 4.991056 TGTGTGAAGATTCTAGTTGTGAGC 59.009 41.667 0.00 0.00 0.00 4.26
3570 3634 8.763049 TTATGTGTGAAGATTCTAGTTGTGAG 57.237 34.615 0.00 0.00 0.00 3.51
3571 3635 9.371136 GATTATGTGTGAAGATTCTAGTTGTGA 57.629 33.333 0.00 0.00 0.00 3.58
3572 3636 9.154847 TGATTATGTGTGAAGATTCTAGTTGTG 57.845 33.333 0.00 0.00 0.00 3.33
3573 3637 9.725019 TTGATTATGTGTGAAGATTCTAGTTGT 57.275 29.630 0.00 0.00 0.00 3.32
3582 3646 9.685276 TGGTAGAAATTGATTATGTGTGAAGAT 57.315 29.630 0.00 0.00 0.00 2.40
3583 3647 9.685276 ATGGTAGAAATTGATTATGTGTGAAGA 57.315 29.630 0.00 0.00 0.00 2.87
3586 3650 8.190122 GCAATGGTAGAAATTGATTATGTGTGA 58.810 33.333 0.48 0.00 37.22 3.58
3587 3651 8.192774 AGCAATGGTAGAAATTGATTATGTGTG 58.807 33.333 0.48 0.00 37.22 3.82
3588 3652 8.297470 AGCAATGGTAGAAATTGATTATGTGT 57.703 30.769 0.48 0.00 37.22 3.72
3594 3658 8.773033 AGGAATAGCAATGGTAGAAATTGATT 57.227 30.769 0.00 0.00 37.22 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.