>input_sequence_46897
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-----GAATATAAGGATAGAAGCAACTCAGGGAGTGTCATTGCTACTCATGTGAGGATCTCAGCATTGCAAGATGGCGAC
TGAGAAGAAAATAATCAGTCTTACTGTCAAGGTTGGTTTGGTGCTGTTTGCAGTATGCATTCTCGCGCCGGTTTCGCTCA
TGGTGTTGCTCAGGCACGCGGTTCCTCTGCAGACATGTAAGTTATTGTTTCATTGACATTTTGGTGTGTCGATGAATAGA
GAGCGCT-C-TGCCGGTTGCTGTAGGAAAATCACATTTTGGGGTCTTGTTTCTGCCAGTTTTATGTTCATTTACTCTATT
TTGTG-TTTGCAGTGAGGTTGCTGTTTTCAGCTGGTTCAGCATCTTTGGTGGCTTGGGAAGAAGTAAAGATGTACTCTGC
AAACAAAGGAGCGTTTCTGTGTGAGTGTGACATGTCGAGCCTAAGATCAGATGTATGCGAGCTGAAGGGCGATGTCCGGG
TAATCCCCTCAAACATCACCATCATTGCCCTCCTCCACCCCTCTGTCTCTGAGAGTCGCCGGTCATGGAGGATGAAGCCG
CACGCGAGGAAGAACGATGGCCACGCGCTCGCCAGCGTCACAGAGGTGTTGGTGTCGGTCACCCCTTCATCACCTCACGT
TCCGGAATGCAAGGCCGAGAGTGCCGCCCCCGCGGTGGTCTTCTCAGTGGGCGCCTATGCAGGCAACATGTTCCATGACT
TCACCGACGTACTCATCCCGCTCTTCATCACCGCCAGCCGGTTCCGCAGCGACGTGCACCTCCTTGTCAGCGACGCCCCA
CCGTGGTGGCTTGACAAGTACCGACCGCTGCTCCGGGGGCTCTCCCACCACGCTGTCATTGACATGGACAGGCAAAGCGC
AGAGGTGCTCTGCTACCCTCATGTGGTCGTCGGCCTCAGCTTCCACAAGGAGATGAGTATCGACACCGCGAAGACTGTCG
GTGGGCACTACTCCATGGCTGACTTTGCCCGCCTTGCCCGGAGATCCTACGGCCTCGAGAGAGATACGGCCATCCGGCTG
CTACATGGCAGTGACAATATCAAGAGCCCGCGGCGCCCCAGGCTGCTCATCATTTCCCGGAAGACAACCAGGGCGTTCAC
CAACATGGGCGCTGTTGCACAGGCGGCAGCCATGCTTGGCTACGAGGTGATCGTCGGCGAGGCGGAGCAGCACTCGGACC
TGCCCGCCTTTGCGCGGCTGGTGAACTCGTGCGACGTGCTGGTGGGCGTGCACGGTGCTGGGCTCACCAACCTGGTGTTC
CTCCCGCCGGGGGCTGTGGTGGTGCAGGTGGTGCCGCTGGGCGGGCTGGAGGCCATGGCGAGGGACGACTTCGGGGAGCC
GGCTGGAGACATGGGGCTCGGTTACGTGCAGTACGGCATCTCCGTCGGGGAGAGCACACTGGCGGAGCTGTACCCACGCG
ACCGCCGTGTGCTGAGGGACCTGGCGCTCCGGTCGGAGTACCTGGTCAGCCAGAACGTCACGCTCGATGTCGCTCGGTTC
AGTGGCGCCTTGTCCCGTGCTCTGGAGCTTCTTCACCATTAGAAGACACTCCGCAGGGCGTAGATTGTTTACAAGATAAT
TTGTCTAGTGTTTTACTACTGCAGTAAA----------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr3D_1_TraesCS3D01G022500
TTGTTGACAAGGAGTGCTCCGAGGATGATGTGTTCCAGATAGCAGCCTCAGACGACAGACTCTCCAAATATTTGGATGGG
AAGGCCATCAGGAAGAGAATTTATGTACCTGGAAGGATCTTGAATGTTATACTAGATCAACAAAAGGCAAGGACGTGATT
ATTGCTCTGATTTTTTC--CG---ATCTTTCCTGGGGTCCTGTCAGAGTAGTTGATAGAGTCTAGAGACTACTGAGACGC
AGCAGATCTGTAAATTTCCATTCTTTTGTAGTA-CATTCTCTGCTATTGGGATGCATCTCTTGTG-------ATACTCCT
ACGTTTAACAATTTGTATTTATGATGGCTTCTCTCTTTGAATGTATTTTCCACTTAAGATCTGCAGAAGCTTTTTGAAGA
AGTGAAACACAAGATTTCTCTTGTGGGCTA---------CTAAAAGTACCACTGAACCTAACTCAGTATGTCGCCTGATT
ATTTTCCAAGTTTCTAGAATTCTGTTGTTGCTTCACATGTTGGCAAGGAGGATTTGACCATGAGCAGAATCCTCCTTGTC
GTTACTCTACCAAAAAGGGGCTGGACCAACTAACTGAAACAGTATTTTCTTGAGTCTAACACCTAACATATCAACTGTTG
CACTGATGTAGACCTTTACCCTGACCTGGGGTATCAGTGTCCACTAACACCAA--------ATGGACTGATGCAACTAAG
CTTCAAGCAGGTATCTCTTTAGGTTTCACTGTTATGTTCTTCTGATTTTTTTTGTTCATCATGCTCTGTTTTCTATACTA
GATTTTCTTTGGGCGTGTCAAACTGTTATGAGTTCTGAAAAGGTATGTTCTCCATGATTGAGT----CGTCTCCTTTGCA
ATATTTGTCTACCAC-TTTTTGTCTTGGGATACACTTTACACAACA--ACCCAATTTATTCTAGGGCGTAGCTGCTTATT
CTGTTGGTGATCCCTAAGAGATCTTCCCAACAAACATTACCTGT----TTAATGAGATGTTTGAACTAACAGAGCAGGTT
A----GAATATAAGGATAGAAGCAACTCAGGGAGTGTCATTGCTACTCATGTGAGGATCTCAGCATTGCAAGATGGCGAC
TGAGAAGAAAATAATCAGTCTTACTGTCAAGGTTGGTTTGGTGCTGTTTGCAGTATGCATTCTCGCGCCGGTTTCGCTCA
TGGTGTTGCTCAGGCACGCGGTTCCTCTGCAGACATGTAAGTTATTGTTTCATTGACATTTTGGTGTGTCGATGAATAGA
GAGCGCT-C-TGCCGGTTGCTGTAGGAAAATCACATTTTGGGGTCTTGTTTCTGCCAGTTTTATGTTCATTTACTCTATT
TTGTG-TTTGCAGTGAGGTTGCTGTTTTCAGCTGGTTCAGCATCTTTGGTGGCTTGGGAAGAAGTAAAGATGTACTCTGC
AAACAAAGGAGCGTTTCTGTGTGAGTGTGACATGTCGAGCCTAAGATCAGATGTATGCGAGCTGAAGGGCGATGTCCGGG
TAATCCCCTCAAACATCACCATCATTGCCCTCCTCCACCCCTCTGTCTCTGAGAGTCGCCGGTCATGGAGGATGAAGCCG
CACGCGAGGAAGAACGATGGCCACGCGCTCGCCAGCGTCACAGAGGTGTTGGTGTCGGTCACCCCTTCATCACCTCACGT
TCCGGAATGCAAGGCCGAGAGTGCCGCCCCCGCGGTGGTCTTCTCAGTGGGCGCCTATGCAGGCAACATGTTCCATGACT
TCACCGACGTACTCATCCCGCTCTTCATCACCGCCAGCCGGTTCCGCAGCGACGTGCACCTCCTTGTCAGCGACGCCCCA
CCGTGGTGGCTTGACAAGTACCGACCGCTGCTCCGGGGGCTCTCCCACCACGCTGTCATTGACATGGACAGGCAAAGCGC
AGAGGTGCTCTGCTACCCTCATGTGGTCGTCGGCCTCAGCTTCCACAAGGAGATGAGTATCGACACCGCGAAGACTGTCG
GTGGGCACTACTCCATGGCTGACTTTGCCCGCCTTGCCCGGAGATCCTACGGCCTCGAGAGAGATACGGCCATCCGGCTG
CTACATGGCAGTGACAATATCAAGAGCCCGCGGCGCCCCAGGCTGCTCATCATTTCCCGGAAGACAACCAGGGCGTTCAC
CAACATGGGCGCTGTTGCACAGGCGGCAGCCATGCTTGGCTACGAGGTGATCGTCGGCGAGGCGGAGCAGCACTCGGACC
TGCCCGCCTTTGCGCGGCTGGTGAACTCGTGCGACGTGCTGGTGGGCGTGCACGGTGCTGGGCTCACCAACCTGGTGTTC
CTCCCGCCGGGGGCTGTGGTGGTGCAGGTGGTGCCGCTGGGCGGGCTGGAGGCCATGGCGAGGGACGACTTCGGGGAGCC
GGCTGGAGACATGGGGCTCGGTTACGTGCAGTACGGCATCTCCGTCGGGGAGAGCACACTGGCGGAGCTGTACCCACGCG
ACCGCCGTGTGCTGAGGGACCTGGCGCTCCGGTCGGAGTACCTGGTCAGCCAGAACGTCACGCTCGATGTCGCTCGGTTC
AGTGGCGCCTTGTCCCGTGCTCTGGAGCTTCTTCACCATTAGAAGACACTCCGCAGGGCGTAGATTGTTTACAAGATAAT
TTGTCTAGTGTTTTACTACTGCAGTAAAATAAAGGGTCTGGCTAAATCTTGTGTGAGCTGTTGGATCGCTGTCACACGGT
CACAAGGCAGATTTGAAGGCCAATCTAGCGACTAAACTCTCTCACTCAACTAAGGATTAGTAATTCCATAAGAGGAAGTG
AAACGGAACACAAATTGGAACAACCAAGGATGAATCAGGTATCTCTTCAGATTTTACTATTGTGTCGATTTGAA--ATTT
T-TTGTGCACCATGCTCTGTTCTCTGCATATAATTTTATTTTGCTATGGGCAATTGTTATGAGCTGTGAAAAAGGTGTGT
AAAGCGTAATACGTTTTGAAAGATTTCTCTGCTG--TTTCTGTCGGAGGATACACTTCAATATGTAACCATGCTGTTTTC
ACTTTTCACTGTAAATAATGGATCATTTAAGATTTCTGGTACTCTGTACTTCACTTTATACTGTAACAAATCTGGAGACT
TTCAACCACAAATGCGCAATAATGGTACGCCTGGTTCCTACCAACCCAGAAGGTGGGTGAGACACATAATTTGCTTCATT
TGTTACTTTCCCTGGTGGTGTTTTCTCATCCAATTTTACAC--------TGACATCCATAATCTATTCTAGGCCTTA--G
TTTCCTATCCTGTTTCTCCCAGCAAATGTTACTTGTTCAGTGAGATGTTTGGAGTTTGGACTAATAGAGCAGGGGGAGAA
GGATACAAGCATATAAGCAAGGAGTCGCATTGCAACTCCTGTGTGGATCAGTTAATTGATGAGATAATCTTTGTGTTTGC
CACACTAGAATTAGGCCGACAACCTTTGTGTACATGAAAATGTTCTGCCCGTTCCAATTATGTACATCGTATTATATATG
AGAGATTCTCGTTATTCTCAGCCTTGCAATCTCAGACCCTCGAAAGGCTCAATAATAATAATTTGCTTCAAACTAAGTTT
TAAAAATTAACTTTCTGCATGCAAAGTCTTCTGCTCACAACTAGAATCTTCACACATAATCAATTTCTACCATTGCTATT
CCT-----------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3B_1
TTGTTGACAAGGAGTGCTCCGAGGATGATGTGTTCCAAATAGCAGCCTCAGACGAGAGACTCTCCAAATATTTGGATGGG
AAGGCCATCAGGAAGAGAATTTATGTGCCTGGAAGGATCTTGAATGTTATACTAGATCAACAAAAGGCAAGGGTGTGATT
ATTGCTCTGGTTTTTTTATCG---ATCTTTCCCCGGGTCCTGTCAGAGTAGTTGATAGAGTCTAGAGACTACTGAGATGC
AACAGATCTGTAAATTTCCATTCCTTTGTAGTA-CATTCTCTGCTATTGGGATGCATCTCTTGTGAATTGTGATACTCCT
ACGTTTAACAATTTATATTTATGATGGCTTCTCTCTTTGAATATATTTTCCACTTAAGGTCTACAGAAGCTTTTTGAAGA
AGTGGAACGCAAGATTTCTCTTGTGGGCTA---------CTAAAAGTACCACTGAGCCTAACTCAATATGTCGCCTGATT
ATTTTCCAAGTTTCTAAAATTCTGTTGTTGCTTCACATGTTGGCAAGGAGGATTTGACCATGAGCAGAATCCTCCTTGTC
GTTACTCTACCAAAAAGGGGCTGGACCAACTAACTGAAACAGTATTTTCTTGAGTCTAACACCTAACATATCAACTGTTG
CACTGATGTAGACCTTTACCCTGACCTGGGGTATCAATGTCCACCAGCACCAAGTTTTCTGATGGACTGATGCAACTAAG
CTT----------------TAGGTTTCACTATTATGTTCATCTCATTTTTTT-GTTCATCATGCTCTGTTTTCTGCACTA
GATTTTCTTTCGGCATGTCGAATTGCTGCGAGTTGTGAAAAGGTATGTTCTCCATGATTGGGT----CATCTCCCTTTGG
TTATTTATCTGCTAC-TTTTTGTCTCGGAATACACTTTACACAACACCACCCAATCTATTCTAGGGCATAGCTGCTTATT
CTGTTGGTGATCCCTAAGAGATCTTCCCAACAAACATTACCTGTTTAATTAATGAGATGTTTGAACTAACAGAGCAGGTT
AAGAAGAATATAAGCATAGAAGCAACTCAGGGAGTGCCATTGCTACTCCTGTGAGGATCTCAGCATTGCAAGATGGCGAC
TGAGAAGAAAATAATCAGTCTTACTGTCAAGGTTGGATTGGTGCTGTTTGCACTATGCATTCTTGCGCCGGTTTCGCTCA
TGGTGCTGTTCAGGCATGCAGTTCCTCTGCAGACATGTAAGTTATGGTTGCTTTGACATTTTGGCGTGTCGATGAATAGA
GGGTGCT-CCTGCCGGTTCCTCAAAAAAAGATTATTTCGGTT-------------CAGTTCTAAGTTCATTTACTTTATT
ATGTGTTTTGCAGTGAGGTTGCTGTTTTCAGCTGGTTCAGCATCTTTGGTGGCTTGGGAAGAAGTAAAGATGTACTCTGC
AAACAAAGGAGCGTTTCTGTGTGAGTGTGACATGTCGAGCCTAAGATCAGATGTATGCGAGCTGAGGGGCGATGTCCGGG
TAATCCTCTCAAACATCACCATCATTGCCCTCCTCCACCCCAATGTCTCTGTGAGGCGCCGGTCATGGAGGATGAAGCCG
CACGCGAGGAAGAATGATGGCCATGCGCTCGCCAATGTCACAGAGGTGTTGGTGTCGGTCACCCCTTCATCACCTTACGC
TCCGGGATGCACGGCTGAGAGTGCCGCCCCAGCGGTGGTCTTCTCGGTCGGCGGCTACGCAGGCAACATGTTCCATGACT
TCACCGACGTACTCATCCCGCTCTTCATCACCGCCAGCCGGTTCCGCAGCGACGTGCACCTCCTTGTCAGCAACGCCCCG
CCGTGGTGGCTTGACAAGTACGGACCGCTGCTCCGGGGGCTCTCCCGCCACGCCGTCATTGACATGGACAGGCAAAGCGA
AGAAGTGCTCTGCTACCCTCATGTGGTCGTCGGCCTCAGCTTCCACAAGGAGATGAGTATCGACACCGTGAAGACTGTCG
GTGGGCACTACTCCATGGCAGACTTTGCCCGCCTTGCCCGGAGATCCTATGGCCTCGAGAGAGATACCGCCATCCGGCTG
CTACACGGCGGTGACAATATCAAGAGCCCGCGGCGCCCCAGGCTGCTCATCATTTCCCGGAAGACAACCAGGGCGTTCAC
CAACATGGGCGCTGTTGCACAGGCGGCAGCCATGCTTGGCTACGAGGTGATCGTCGGCGAGGCGGAGCAGCACTCGGACC
TTCCCGCCTTTGCGCGGCTGGTGAACTCGTGCGGCGTGCTGGTGGGCGTTCACGGTGCTGGGCTCACCAACCTGGTGTTC
CTCCCGCCGGGGGCTGTGGTGGTGCAGGTGGTGCCGCTGGGCGGGCTGGAGGCCATGGCGGGGGACGACTTCGGTGTGCC
GGCTGGCGACATGGGGCTCGGTTACGTGCAGTACGGCATCGCTGTCGGGGAGAGCACACTGGCGGAGCTGTACCCACGTG
ACCACCGTGTGCTGAGGGCCCTGGCGCTCCGGTCGGAGTACCTGGTCGGCCAGAACGTCACGCTTGATGTCGCTCGGTTC
AGTGGCGCCTTGTCCCGTGCTCTGGAGCTTCTTCACCGTTAGAAGGCACTCCACAGGGCGTAGATTGTTTACAAGATAAT
TAGTCAAGTGTTTTACTACTGCAGTAAAATAAAGGGTCTGGCTAAATCATGTGTGAGCTGTTGGATCGCTGTCACACGGT
GAGAAGACAAATTCGAAGGCTAATCTAGTGACTAAATTCTCTCACTCAACTAAGGATTAGCAATTCCATAAGAGGAAGTG
AAACGGAACACAAATTGGAACAACCAAGGTTGAATCACATATCTCTCCAGATTTTACTATTGTGTCAATTTGAATTATTT
T-TTGTGCACCATGCTCTGTTCTCTGCATATAATTTTATTTTGGCATGGCCAGTTGTTATGAGCTGTGAAAAAGGTGTGT
AAAGCGTAATTTGTTTAGAAAGATTTCTCTCCTGTTTTTCTGTCAGAGGATACACTTCAATATGTAACCATGCCGTC-TC
ACTTTTCACTGTAAATAATGGATCATTTAAGATTTCTGGTACTC---------CTTTATACTGTAACAAACCTGGAGACT
TTCAACCGCAAATGCACAATAATGCTACTCCTAGGTCCTACCAACCCAGAAGGTGGGTGAGACACATAATTTGCTTCATT
GGTTACTTTCCCTGGTGGTGTTTGCTCATCCAATTTTACAC--------TGAGATGCATAATCTATTCTAGGTCTTACAG
TTTATTATCCTGTT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3A_1
TTGTTGACAAGGAGTGCTCCGAGGATGATGTGTTCCAAATAGCAGCCTCAGACGAGAGACTCTCCAAATATTTGGATGGG
AAGGCCATAAGGAAGAGAATTTATGTGCCTGGAAGGATCTTGAATGTTATACTAGATCAACAAAAGGCAAGGACGTGATT
ATTGCTCTGGTTTTTTC--CATCAATCTTCCCCAGAGTCCTGGCAGAGTAGTTGATAGAGTCTCG---------------
---AGATCTGTAAATTTCCATTCTTTTGTAGTAACATTTTCTGCTATTGGTATGTATCTT-------TTGTGATACTCCT
ATGTTTAACATTATAATTTTATGATGGC--CTCTCTTTGAATATATTTTCCACTTAAGATCTGTAGAAGCTTTTTGAAGA
AGTGAAATGCAAGATTTCTCTTGTGGGCTACGAAAAAGTCTAAAAGTACCACTGAACCTAGCTCAAAG-GTTGCCTGATT
ATTTTCCAAGTTTCTGAATTTCTTTTGTTGCTTCACATGTTGGCAAGGAGGATTTGACCATGAGCAGAATCCTCCTTGTC
GTTATTCTACC--AAAGGGGTTGGACCAACTAACTGAAACAGTATTTTCTTTAGTCTAACACCTAACATGTCCACTGTTG
CAC---TGTAGAACTTTACCCTGACCTGGGGTATCAGTGTCCACCAGCACCAAGTTTTCTGATGGACTGATGCAACTAAG
CTT----------------TATGTTTCACTATTATGTTCATCTCATTTGTTT-GAAAATCATGCTCTGTTTTCTGCACTA
GATTTCCTTTGGGCGTGTCGAATTGTGACGAGTTATGAAAAGGTATGTTCTCCATGATTGAGTGAGTCATCTCCTTTGGA
ATATTTATGTGCTACTTTTTTGTCTCTGGATACACTTTACACAACACCCCCCAATCTATTCTAGGGCGTAGCTGCTTATT
CTGTTGGTGATCCCTAAGAGATCTTCCCAACAAACATTACCTGT----TTAATGAGATGTTTGAACTAACAGAGCAGGTT
A----GAATATAAGCATAGAAGCAACTCAGGGAGTATCATTGCTACTCCTCTGAGGATCTCAGCATTGCAAGATGGTGAC
TGATAAGAAAATAATCAGTCTTACTGTCAAGGTTGGATTGGTGCTGTTTGCAGTATGCATTCTTGCGCCGATTTCGCTCA
TGGTGCTATTCAGGCATGCAGTTCCTCTGCAGACATGTAAGTTATGGTTGCTTTGACATTTTGGCCTGTTGATGAATAGA
GAGTGCTCC-TGCCGGTTGCTCTAGGAAAAACACATTTTGGGGTCTTGTTTCTGCCAGTTTTACGTTCATTTACTCTATT
TTGTG-TTTGCAGTGAGGTTGCTGTTTTCAGCTGGTCCAACATCTTCAGTGATGTGGGAAGAAGAAAAGATGGACTCTGC
AAACAAAGGGGAGCTGCTGTGTGAGTGTGACATGTCGAGCCTAAGATCAGATGTATGCGAGCTGAAGGGCGATGTCCGGG
TAATCCTCTCCAACGTCACCATCATTGCCCTCCTCCATCCCTCTGTCTCTGTGAGGCGCCGGTCATGGAGGATGAAGCCG
CACGCGAGGAAGAATGATGGCCACACGCTCGCCAATGTCACAGAGGTGTTGGTGTCGGTCACCCCTTCATCACCTTACGC
TCCGGGATGCACGGCCGAGAGTGCCGCCCCTGCGGTGGTCTTCTCAGTCGGCGGCTACGCAGGCAACATGTTCCATGACT
TCACCGACGTACTCATCCCGCTCTTCATCACCGCCAGCCGGTTCCGCAGCGACGCGCACCTCCTTGTCAGCGACGCCCCA
CCGTGGTGGCTTGACAAGTACCGACCGCTGCTCCGGGGGCTCTCCCGCCACGCTGTCATTGACATGGACAGGCAAAGCGC
AGAAGTGCTCTGCTACCCTCATGTGGTCGTCGGCCTCAGCTTCCACAAGGAGATGAGTATCGACACCGCGAAGACTCTCG
GTGGGCACTACTCCATGGCCGGCTTTGCCCACCTTGCCCGGAGATCCTATGGCCTCGAGAGGGATACTGCCATCCGGCTG
CTACATGGCAGTGACAATATCGAGAGCCCGCGACGCCCCAGGCTGCTCATCATTTCCCGGAAGACAACCAGGGCGTTCAC
CAACATGGGGGCTGTTGCACAGGCGGCAGCCATGCTTGGCTACGAGGTGATCGTCGGCGAGGCGGAGCAGCACTCGGACC
TGCCCGCCTTTGCACGGCTGGTGAACTCGTGCGACGTGCTGGTGGGCGTTCATGGTGCTGGGCTCACCAACCTGGTGTTC
CTCCCGCCAGGGGCTGTGGTGGTACAGGTGGTGCCGCTGGGTGGGCTGGAGGCCATGGCGAGGGACGACTTCGGGGAGCC
GGCTGGCGACATGGGGCTCAGTTACGTGCAGTACCGCATCGCCGTCGGGGAGAGCACACTGGCGGAGCTGTACCCACGTG
ACCACCGTGTGCTGAGGGACCTGGCGCTCCGGTCGGAGTACCTGGTCGGCCAGAACGTCACGCTCGATGTCGCTCGGTTC
AGTGGCGCCTTGTCCCGTGCTCTGGAGCTTCTTCACCATTAGAAGACACTCCACAGGGCGTAGATTGTTTACAAGATAAT
TAGTCAAGTGTTTTACTACTGCAGTAAAATAAAGGGTCTGGCTAAATCATGTGTGAGCTGTTGGATCGCTGTCACACGGT
CAGAAGGCAAATTCGAAGGCTAATCTAGGGACTAAACTCTCTCACTCAACTAAGGATTAGCAATTCCATAAGATATAGTG
AAACATAACACAAATTGGAACAACCAAGGTTGAATCAGGTATCTCTTCAGATTTTAGTATTGTGTCGGACTTGAAAAAAA
AATTGTGCACCATGCTCTGTTCTCTGCATA--ATTTTATTTTGGCATGGGCAGTTATTATGATCTGTGAAAAAGGTGTGT
AAACCGTAATTCGGTTAGAAAGATTTCTCTGCTG--TTTCTGTCAGAGGATACACTTCAATATGTAACCATGCTGTTTTC
GCTTTTCACTGTAAATAATGGATCATTTAAGATTTCTGGTACGCCGTACTTCACTTTTTATA------------------
TTCAACCGCAAATGCACAATAATGCTACTCATAGTTCCTACCAACCCAGAAGGTGGGTGAGACACATAATTTGCTTCATT
TGTTACTTTCCCTGGTGGTGTTTGATCATCCAATTTTACACTGAGAATCTGAGATGCATAATCTATTCTAGGCCTT--AG
TTTATTATCCTGTTGTTGACTCCTACGTACAACAATAGGTGGGCTGTTGGATCTCTAACGCACGGTAAAAATCTGGGGCT
AATCCAGTGGCTAAGCTCTTACTCAACTGAGAATAACAATTCCATAAGGTAACTCTTCATATTTTACTATCGTGTTGTTT
TGATTTTATTTTTCTGCGCATCATGCTTTGTTTTCTGCTATAGACTTTATGTTGGCATGTGCAATTGTTATGAGTTGTGG
AAAAAAGGAGTGTAAGCCATAATTCGATTAGAAAGATTTCATTTCACTGCTAATTTTGTCCAAGGATACGCCTCAACATA
TATAACCAGGCCGCTTTTGCTTTTAACTGTAAATAATGGAATTCTGGCACTTCACTTTATACCATAACAAACTTGGGGAC
TTTCAACTGCAAAGGCCAAATAGTGCTACCCAAAAGGTGAGCCAGACACACAGCTTGCTACTTTTGTTACTTTCCCTGGT
TGGTGGTGTTTTCTCATCCAACTTTACACTGACATGCATAATCTATTCTAGGCCTTAGTTTCCTCTCCTG
>SNPs
-------------------------------------S-----------------S------------------------
--------------------------S-----------------------------------------------------
---------S----------------------SS-------------------------------------------S--
-S------------------------------------------------------------------------------
--------------S---------------------------S-------------------------------------
--------S--------------------------------------------------------S--------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-S---------------------------------
---SSSSSSSSSSSSSSSS-----------S--------S---S--------S---------------------SS----
-------------------S--S-----S-----S---------------------------------S---------S-
------S---S-S------------S-----------------------------S------------------------
--------------------------------------------------------------------------------
--------------S---------------------------------S-------------------------------
------------------------------------S--------------------------S----------------
-----S--S-------S--S-------------------------S---S-S------------S---------------
---S-----------------S--------S--------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------------------------------S---S------------------------
--------------S-------------------SS---------------------------------------S---S
-----S-----S------------------S-----------------S----S---S----------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
---S----------------------------------------------------------------------------
-------------------S-----------------------------S-----------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
------S---------------------------------S-------------------------------------S-
---S-------------------------------------------S--------------------------------
----------------------------------------------------S---------------------------
-S---S------------------------------------------S-------------------------------
--S------S---S------S-------S-------------------------------S-------------------
-----------------------------S--------------------------------------------------
-------------------------------------------SS-------S---------------------------
----------S-----S---------------------------S-----------------------------------
--------------------------------------------S-------------------------S---------
-------S-------S--------S---S---S-----------------------------------------------
-----------------------S----------------------------S--S------------------------
---SS---------SS-SS-SS-S-SSSSS-SSSS-SSSSS-SSSSS-SSSSSSS-SSSS-SSSSSS-SS-SSS--S-SS
SSSSSSSS-SS--SSSS-SSSSSSSSSSSSSSSS-SSSS-SSSSSS-SSSSSSSS--S--SSSS--S-S-SSSSS-S-SS
SSSSS-SSSS--SSSS--SSSSSSSS-S---SSSSSSSS--SSS--SSSS---SSS--SSSSS-SSSSSSSSSS-SSSS-
-S-S-SSSSSSS--SS-SSSSSS-S-SSSSSSS---SSSSSSSSSSSSS-S-SSS-SS-SSSSS-S-S-SSSSS--SS-S
--S--SSSSS-SSSS-SSSSSSSS-SSSS-SSSSSSSSS-S-SSSSS-SSSS---S-S--SSSS-SSS-SSS---SSSSS
SS------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_56
------------------------------------AGATAGCAGCCTCAGACGAC------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_1924
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---GGTGCTCTGCTACCCTCATG---------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>forward_1572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CTCCACCCCTCTGTCTCTGA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_3540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------AGCCTTGCAATCTCAGACCC-----------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
