Multiple sequence alignment - TraesCS3D01G022300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G022300 chr3D 100.000 2822 0 0 1 2822 7187717 7184896 0.000000e+00 5212
1 TraesCS3D01G022300 chr3D 93.296 179 11 1 38 216 254826839 254827016 2.160000e-66 263
2 TraesCS3D01G022300 chr3B 89.338 2326 124 42 357 2610 8802378 8800105 0.000000e+00 2808
3 TraesCS3D01G022300 chr3B 90.909 187 15 2 43 228 746353593 746353408 1.680000e-62 250
4 TraesCS3D01G022300 chr3B 88.435 147 13 2 2680 2822 8800062 8799916 1.040000e-39 174
5 TraesCS3D01G022300 chr3A 88.177 1903 108 48 284 2122 13074351 13076200 0.000000e+00 2159
6 TraesCS3D01G022300 chr3A 91.803 183 14 1 40 221 70479040 70479222 1.300000e-63 254
7 TraesCS3D01G022300 chr1D 94.253 174 10 0 45 218 418194097 418193924 1.670000e-67 267
8 TraesCS3D01G022300 chr1D 78.313 332 51 9 1050 1381 509876 510186 7.980000e-46 195
9 TraesCS3D01G022300 chr5A 95.238 168 7 1 44 210 456897737 456897904 5.990000e-67 265
10 TraesCS3D01G022300 chr5A 83.051 118 11 4 997 1114 664783009 664783117 6.430000e-17 99
11 TraesCS3D01G022300 chr6B 91.398 186 14 2 45 229 67538966 67539150 1.300000e-63 254
12 TraesCS3D01G022300 chr5B 90.476 189 18 0 40 228 657711450 657711262 1.680000e-62 250
13 TraesCS3D01G022300 chr2D 90.526 190 16 2 40 228 457644175 457643987 1.680000e-62 250
14 TraesCS3D01G022300 chr4D 90.426 188 17 1 41 227 238640161 238640348 2.170000e-61 246
15 TraesCS3D01G022300 chr4A 77.506 449 75 12 1406 1850 661505104 661504678 2.170000e-61 246
16 TraesCS3D01G022300 chr2A 76.883 385 59 13 997 1381 174025253 174024899 1.030000e-44 191
17 TraesCS3D01G022300 chr1A 76.623 385 57 18 997 1381 3117321 3117672 6.210000e-42 182
18 TraesCS3D01G022300 chr7A 84.756 164 16 4 997 1160 268850158 268850004 3.760000e-34 156
19 TraesCS3D01G022300 chr7A 82.317 164 20 4 997 1160 703520692 703520538 1.760000e-27 134
20 TraesCS3D01G022300 chr1B 76.276 333 52 13 1049 1381 4220055 4220360 4.870000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G022300 chr3D 7184896 7187717 2821 True 5212 5212 100.0000 1 2822 1 chr3D.!!$R1 2821
1 TraesCS3D01G022300 chr3B 8799916 8802378 2462 True 1491 2808 88.8865 357 2822 2 chr3B.!!$R2 2465
2 TraesCS3D01G022300 chr3A 13074351 13076200 1849 False 2159 2159 88.1770 284 2122 1 chr3A.!!$F1 1838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.036732 TCCTGGCTCAAGCAAATCGT 59.963 50.0 4.13 0.00 44.36 3.73 F
479 500 0.036875 AGGTGTTGCTAGCTCCAACC 59.963 55.0 17.23 16.93 41.33 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1494 0.179040 TCCCGATCCCAAAATACGCC 60.179 55.0 0.00 0.0 0.0 5.68 R
2136 2236 0.179174 GAACCTAACCAATTGCGCGG 60.179 55.0 8.83 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.498726 CGAGAAGAGGCTCCTGGC 59.501 66.667 11.71 0.00 40.90 4.85
24 25 2.932194 AGGCTCCTGGCTCAAGCA 60.932 61.111 4.13 0.00 46.86 3.91
25 26 2.034687 GGCTCCTGGCTCAAGCAA 59.965 61.111 4.13 0.00 44.36 3.91
26 27 1.604593 GGCTCCTGGCTCAAGCAAA 60.605 57.895 4.13 0.00 44.36 3.68
27 28 0.969409 GGCTCCTGGCTCAAGCAAAT 60.969 55.000 4.13 0.00 44.36 2.32
28 29 0.455005 GCTCCTGGCTCAAGCAAATC 59.545 55.000 4.13 0.00 44.36 2.17
29 30 0.731417 CTCCTGGCTCAAGCAAATCG 59.269 55.000 4.13 0.00 44.36 3.34
30 31 0.036732 TCCTGGCTCAAGCAAATCGT 59.963 50.000 4.13 0.00 44.36 3.73
31 32 1.277842 TCCTGGCTCAAGCAAATCGTA 59.722 47.619 4.13 0.00 44.36 3.43
32 33 1.667724 CCTGGCTCAAGCAAATCGTAG 59.332 52.381 4.13 0.00 44.36 3.51
33 34 1.667724 CTGGCTCAAGCAAATCGTAGG 59.332 52.381 4.13 0.00 44.36 3.18
34 35 1.003118 TGGCTCAAGCAAATCGTAGGT 59.997 47.619 4.13 0.00 44.36 3.08
35 36 2.235155 TGGCTCAAGCAAATCGTAGGTA 59.765 45.455 4.13 0.00 44.36 3.08
36 37 2.608090 GGCTCAAGCAAATCGTAGGTAC 59.392 50.000 4.13 0.00 44.36 3.34
37 38 3.522553 GCTCAAGCAAATCGTAGGTACT 58.477 45.455 0.00 0.00 41.66 2.73
38 39 3.552294 GCTCAAGCAAATCGTAGGTACTC 59.448 47.826 0.00 0.00 39.84 2.59
39 40 4.678309 GCTCAAGCAAATCGTAGGTACTCT 60.678 45.833 0.00 0.00 39.84 3.24
40 41 4.995124 TCAAGCAAATCGTAGGTACTCTC 58.005 43.478 0.00 0.00 41.75 3.20
41 42 4.705507 TCAAGCAAATCGTAGGTACTCTCT 59.294 41.667 0.00 0.00 41.75 3.10
42 43 5.185249 TCAAGCAAATCGTAGGTACTCTCTT 59.815 40.000 0.00 0.00 41.75 2.85
43 44 6.376299 TCAAGCAAATCGTAGGTACTCTCTTA 59.624 38.462 0.00 0.00 41.75 2.10
44 45 6.963083 AGCAAATCGTAGGTACTCTCTTAT 57.037 37.500 0.00 0.00 41.75 1.73
45 46 8.350722 CAAGCAAATCGTAGGTACTCTCTTATA 58.649 37.037 0.00 0.00 41.75 0.98
46 47 7.873910 AGCAAATCGTAGGTACTCTCTTATAC 58.126 38.462 0.00 0.00 41.75 1.47
47 48 7.720515 AGCAAATCGTAGGTACTCTCTTATACT 59.279 37.037 0.00 0.00 41.75 2.12
48 49 8.351461 GCAAATCGTAGGTACTCTCTTATACTT 58.649 37.037 0.00 0.00 41.75 2.24
49 50 9.881529 CAAATCGTAGGTACTCTCTTATACTTC 57.118 37.037 0.00 0.00 41.75 3.01
50 51 8.620116 AATCGTAGGTACTCTCTTATACTTCC 57.380 38.462 0.00 0.00 41.75 3.46
51 52 6.219473 TCGTAGGTACTCTCTTATACTTCCG 58.781 44.000 0.00 0.00 41.75 4.30
52 53 5.107143 CGTAGGTACTCTCTTATACTTCCGC 60.107 48.000 0.00 0.00 41.75 5.54
53 54 4.143543 AGGTACTCTCTTATACTTCCGCC 58.856 47.826 0.00 0.00 0.00 6.13
54 55 3.058363 GGTACTCTCTTATACTTCCGCCG 60.058 52.174 0.00 0.00 0.00 6.46
55 56 2.652590 ACTCTCTTATACTTCCGCCGT 58.347 47.619 0.00 0.00 0.00 5.68
56 57 3.022406 ACTCTCTTATACTTCCGCCGTT 58.978 45.455 0.00 0.00 0.00 4.44
57 58 3.446516 ACTCTCTTATACTTCCGCCGTTT 59.553 43.478 0.00 0.00 0.00 3.60
58 59 4.037858 TCTCTTATACTTCCGCCGTTTC 57.962 45.455 0.00 0.00 0.00 2.78
59 60 3.698040 TCTCTTATACTTCCGCCGTTTCT 59.302 43.478 0.00 0.00 0.00 2.52
60 61 4.883585 TCTCTTATACTTCCGCCGTTTCTA 59.116 41.667 0.00 0.00 0.00 2.10
61 62 5.357878 TCTCTTATACTTCCGCCGTTTCTAA 59.642 40.000 0.00 0.00 0.00 2.10
62 63 5.964758 TCTTATACTTCCGCCGTTTCTAAA 58.035 37.500 0.00 0.00 0.00 1.85
63 64 6.576185 TCTTATACTTCCGCCGTTTCTAAAT 58.424 36.000 0.00 0.00 0.00 1.40
64 65 7.715657 TCTTATACTTCCGCCGTTTCTAAATA 58.284 34.615 0.00 0.00 0.00 1.40
65 66 8.362639 TCTTATACTTCCGCCGTTTCTAAATAT 58.637 33.333 0.00 0.00 0.00 1.28
66 67 8.891671 TTATACTTCCGCCGTTTCTAAATATT 57.108 30.769 0.00 0.00 0.00 1.28
67 68 7.797038 ATACTTCCGCCGTTTCTAAATATTT 57.203 32.000 5.89 5.89 0.00 1.40
68 69 5.875930 ACTTCCGCCGTTTCTAAATATTTG 58.124 37.500 11.05 1.65 0.00 2.32
69 70 5.413523 ACTTCCGCCGTTTCTAAATATTTGT 59.586 36.000 11.05 0.00 0.00 2.83
70 71 5.473796 TCCGCCGTTTCTAAATATTTGTC 57.526 39.130 11.05 0.00 0.00 3.18
71 72 5.180271 TCCGCCGTTTCTAAATATTTGTCT 58.820 37.500 11.05 0.00 0.00 3.41
72 73 5.644636 TCCGCCGTTTCTAAATATTTGTCTT 59.355 36.000 11.05 0.00 0.00 3.01
73 74 6.149807 TCCGCCGTTTCTAAATATTTGTCTTT 59.850 34.615 11.05 0.00 0.00 2.52
74 75 6.468000 CCGCCGTTTCTAAATATTTGTCTTTC 59.532 38.462 11.05 0.00 0.00 2.62
75 76 7.241376 CGCCGTTTCTAAATATTTGTCTTTCT 58.759 34.615 11.05 0.00 0.00 2.52
76 77 8.385111 CGCCGTTTCTAAATATTTGTCTTTCTA 58.615 33.333 11.05 0.00 0.00 2.10
77 78 9.704098 GCCGTTTCTAAATATTTGTCTTTCTAG 57.296 33.333 11.05 0.00 0.00 2.43
91 92 8.990163 TTGTCTTTCTAGAGGTTTTAAATGGT 57.010 30.769 0.00 0.00 0.00 3.55
92 93 8.990163 TGTCTTTCTAGAGGTTTTAAATGGTT 57.010 30.769 0.00 0.00 0.00 3.67
102 103 8.889717 AGAGGTTTTAAATGGTTATCACATACG 58.110 33.333 0.00 0.00 0.00 3.06
103 104 7.992008 AGGTTTTAAATGGTTATCACATACGG 58.008 34.615 0.00 0.00 0.00 4.02
104 105 7.830201 AGGTTTTAAATGGTTATCACATACGGA 59.170 33.333 0.00 0.00 0.00 4.69
105 106 8.626526 GGTTTTAAATGGTTATCACATACGGAT 58.373 33.333 0.00 0.00 0.00 4.18
106 107 9.445786 GTTTTAAATGGTTATCACATACGGATG 57.554 33.333 5.94 5.94 39.16 3.51
108 109 9.833917 TTTAAATGGTTATCACATACGGATGTA 57.166 29.630 14.23 2.61 44.82 2.29
114 115 9.689501 TGGTTATCACATACGGATGTATATAGA 57.310 33.333 14.23 6.57 44.82 1.98
115 116 9.947669 GGTTATCACATACGGATGTATATAGAC 57.052 37.037 14.23 13.25 44.82 2.59
148 149 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
149 150 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
150 151 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
151 152 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
152 153 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
153 154 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
154 155 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
155 156 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
156 157 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
157 158 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
158 159 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
159 160 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
160 161 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
161 162 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
162 163 6.653020 TCATTTTGCTCCATATGTAGTCACT 58.347 36.000 1.24 0.00 0.00 3.41
163 164 7.112122 TCATTTTGCTCCATATGTAGTCACTT 58.888 34.615 1.24 0.00 0.00 3.16
164 165 6.741992 TTTTGCTCCATATGTAGTCACTTG 57.258 37.500 1.24 0.00 0.00 3.16
165 166 5.420725 TTGCTCCATATGTAGTCACTTGT 57.579 39.130 1.24 0.00 0.00 3.16
166 167 5.420725 TGCTCCATATGTAGTCACTTGTT 57.579 39.130 1.24 0.00 0.00 2.83
167 168 5.178061 TGCTCCATATGTAGTCACTTGTTG 58.822 41.667 1.24 0.00 0.00 3.33
168 169 5.046663 TGCTCCATATGTAGTCACTTGTTGA 60.047 40.000 1.24 0.00 0.00 3.18
169 170 5.874810 GCTCCATATGTAGTCACTTGTTGAA 59.125 40.000 1.24 0.00 35.39 2.69
170 171 6.371548 GCTCCATATGTAGTCACTTGTTGAAA 59.628 38.462 1.24 0.00 35.39 2.69
171 172 7.066284 GCTCCATATGTAGTCACTTGTTGAAAT 59.934 37.037 1.24 0.00 35.39 2.17
172 173 8.492673 TCCATATGTAGTCACTTGTTGAAATC 57.507 34.615 1.24 0.00 35.39 2.17
173 174 8.321353 TCCATATGTAGTCACTTGTTGAAATCT 58.679 33.333 1.24 0.00 35.39 2.40
174 175 8.607459 CCATATGTAGTCACTTGTTGAAATCTC 58.393 37.037 1.24 0.00 35.39 2.75
175 176 9.376075 CATATGTAGTCACTTGTTGAAATCTCT 57.624 33.333 0.00 0.00 35.39 3.10
177 178 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
178 179 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
179 180 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
180 181 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
181 182 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
182 183 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
183 184 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
184 185 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
185 186 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
186 187 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
199 200 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
200 201 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
201 202 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
202 203 8.319146 AGAAAGACAAATATTTAGGAACGGAGA 58.681 33.333 0.00 0.00 0.00 3.71
203 204 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
204 205 7.419711 AGACAAATATTTAGGAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
205 206 7.493367 AGACAAATATTTAGGAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
206 207 7.124448 AGACAAATATTTAGGAACGGAGAGAGT 59.876 37.037 0.00 0.00 0.00 3.24
207 208 8.302515 ACAAATATTTAGGAACGGAGAGAGTA 57.697 34.615 0.00 0.00 0.00 2.59
208 209 8.925338 ACAAATATTTAGGAACGGAGAGAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
209 210 9.765795 CAAATATTTAGGAACGGAGAGAGTATT 57.234 33.333 0.00 0.00 0.00 1.89
217 218 8.302515 AGGAACGGAGAGAGTATTTATTTACA 57.697 34.615 0.00 0.00 0.00 2.41
218 219 8.414778 AGGAACGGAGAGAGTATTTATTTACAG 58.585 37.037 0.00 0.00 0.00 2.74
219 220 8.411683 GGAACGGAGAGAGTATTTATTTACAGA 58.588 37.037 0.00 0.00 0.00 3.41
220 221 9.453325 GAACGGAGAGAGTATTTATTTACAGAG 57.547 37.037 0.00 0.00 0.00 3.35
221 222 7.942990 ACGGAGAGAGTATTTATTTACAGAGG 58.057 38.462 0.00 0.00 0.00 3.69
222 223 7.014422 ACGGAGAGAGTATTTATTTACAGAGGG 59.986 40.741 0.00 0.00 0.00 4.30
223 224 7.230913 CGGAGAGAGTATTTATTTACAGAGGGA 59.769 40.741 0.00 0.00 0.00 4.20
224 225 8.581578 GGAGAGAGTATTTATTTACAGAGGGAG 58.418 40.741 0.00 0.00 0.00 4.30
225 226 9.138596 GAGAGAGTATTTATTTACAGAGGGAGT 57.861 37.037 0.00 0.00 0.00 3.85
228 229 9.710818 AGAGTATTTATTTACAGAGGGAGTACA 57.289 33.333 0.00 0.00 0.00 2.90
229 230 9.747293 GAGTATTTATTTACAGAGGGAGTACAC 57.253 37.037 0.00 0.00 0.00 2.90
230 231 8.411683 AGTATTTATTTACAGAGGGAGTACACG 58.588 37.037 0.00 0.00 0.00 4.49
231 232 6.594788 TTTATTTACAGAGGGAGTACACGT 57.405 37.500 0.00 0.00 0.00 4.49
232 233 6.594788 TTATTTACAGAGGGAGTACACGTT 57.405 37.500 0.00 0.00 0.00 3.99
233 234 7.701539 TTATTTACAGAGGGAGTACACGTTA 57.298 36.000 0.00 0.00 0.00 3.18
234 235 5.376854 TTTACAGAGGGAGTACACGTTAC 57.623 43.478 0.00 0.00 0.00 2.50
235 236 2.165998 ACAGAGGGAGTACACGTTACC 58.834 52.381 0.00 0.00 0.00 2.85
236 237 1.131883 CAGAGGGAGTACACGTTACCG 59.868 57.143 0.00 0.00 40.83 4.02
237 238 0.453390 GAGGGAGTACACGTTACCGG 59.547 60.000 0.00 0.00 38.78 5.28
238 239 0.038166 AGGGAGTACACGTTACCGGA 59.962 55.000 9.46 0.00 38.78 5.14
239 240 1.106285 GGGAGTACACGTTACCGGAT 58.894 55.000 9.46 0.00 38.78 4.18
240 241 2.092429 AGGGAGTACACGTTACCGGATA 60.092 50.000 9.46 0.00 38.78 2.59
241 242 2.887152 GGGAGTACACGTTACCGGATAT 59.113 50.000 9.46 0.00 38.78 1.63
242 243 3.319122 GGGAGTACACGTTACCGGATATT 59.681 47.826 9.46 0.00 38.78 1.28
243 244 4.518970 GGGAGTACACGTTACCGGATATTA 59.481 45.833 9.46 0.00 38.78 0.98
244 245 5.452777 GGAGTACACGTTACCGGATATTAC 58.547 45.833 9.46 0.00 38.78 1.89
245 246 5.438761 AGTACACGTTACCGGATATTACC 57.561 43.478 9.46 0.00 38.78 2.85
246 247 4.887071 AGTACACGTTACCGGATATTACCA 59.113 41.667 9.46 0.00 38.78 3.25
247 248 4.734398 ACACGTTACCGGATATTACCAA 57.266 40.909 9.46 0.00 38.78 3.67
248 249 5.083533 ACACGTTACCGGATATTACCAAA 57.916 39.130 9.46 0.00 38.78 3.28
249 250 5.111293 ACACGTTACCGGATATTACCAAAG 58.889 41.667 9.46 0.00 38.78 2.77
250 251 5.111293 CACGTTACCGGATATTACCAAAGT 58.889 41.667 9.46 0.00 38.78 2.66
251 252 5.005971 CACGTTACCGGATATTACCAAAGTG 59.994 44.000 9.46 3.85 38.78 3.16
252 253 4.508861 CGTTACCGGATATTACCAAAGTGG 59.491 45.833 9.46 0.00 45.02 4.00
253 254 8.255841 ACGTTACCGGATATTACCAAAGTGGT 62.256 42.308 9.46 5.09 46.13 4.16
254 255 9.922264 ACGTTACCGGATATTACCAAAGTGGTC 62.922 44.444 9.46 0.00 42.72 4.02
263 264 2.638480 CCAAAGTGGTCAGACCTTCA 57.362 50.000 20.82 0.00 39.58 3.02
264 265 2.930950 CCAAAGTGGTCAGACCTTCAA 58.069 47.619 20.82 0.00 39.58 2.69
265 266 3.490348 CCAAAGTGGTCAGACCTTCAAT 58.510 45.455 20.82 0.00 39.58 2.57
266 267 4.651778 CCAAAGTGGTCAGACCTTCAATA 58.348 43.478 20.82 0.00 39.58 1.90
267 268 5.070001 CCAAAGTGGTCAGACCTTCAATAA 58.930 41.667 20.82 0.00 39.58 1.40
268 269 5.534654 CCAAAGTGGTCAGACCTTCAATAAA 59.465 40.000 20.82 0.00 39.58 1.40
269 270 6.209391 CCAAAGTGGTCAGACCTTCAATAAAT 59.791 38.462 20.82 0.00 39.58 1.40
270 271 7.393234 CCAAAGTGGTCAGACCTTCAATAAATA 59.607 37.037 20.82 0.00 39.58 1.40
271 272 8.960591 CAAAGTGGTCAGACCTTCAATAAATAT 58.039 33.333 20.82 0.00 39.58 1.28
273 274 9.614792 AAGTGGTCAGACCTTCAATAAATATAC 57.385 33.333 20.82 5.53 39.58 1.47
274 275 7.926555 AGTGGTCAGACCTTCAATAAATATACG 59.073 37.037 20.82 0.00 39.58 3.06
275 276 7.924412 GTGGTCAGACCTTCAATAAATATACGA 59.076 37.037 20.82 0.00 39.58 3.43
276 277 7.924412 TGGTCAGACCTTCAATAAATATACGAC 59.076 37.037 20.82 0.00 39.58 4.34
277 278 7.114529 GGTCAGACCTTCAATAAATATACGACG 59.885 40.741 12.94 0.00 34.73 5.12
278 279 7.859377 GTCAGACCTTCAATAAATATACGACGA 59.141 37.037 0.00 0.00 0.00 4.20
279 280 7.859377 TCAGACCTTCAATAAATATACGACGAC 59.141 37.037 0.00 0.00 0.00 4.34
280 281 7.114529 CAGACCTTCAATAAATATACGACGACC 59.885 40.741 0.00 0.00 0.00 4.79
281 282 5.916883 ACCTTCAATAAATATACGACGACCG 59.083 40.000 0.00 0.00 45.44 4.79
290 291 4.777781 CGACGACCGTCTTATGCA 57.222 55.556 18.60 0.00 42.54 3.96
291 292 3.024423 CGACGACCGTCTTATGCAA 57.976 52.632 18.60 0.00 42.54 4.08
292 293 0.638746 CGACGACCGTCTTATGCAAC 59.361 55.000 18.60 0.00 42.54 4.17
293 294 1.705256 GACGACCGTCTTATGCAACA 58.295 50.000 14.52 0.00 41.57 3.33
294 295 2.268298 GACGACCGTCTTATGCAACAT 58.732 47.619 14.52 0.00 41.57 2.71
295 296 2.671396 GACGACCGTCTTATGCAACATT 59.329 45.455 14.52 0.00 41.57 2.71
296 297 3.071479 ACGACCGTCTTATGCAACATTT 58.929 40.909 0.00 0.00 0.00 2.32
300 301 4.323417 ACCGTCTTATGCAACATTTGAGA 58.677 39.130 0.00 0.00 0.00 3.27
305 306 7.360861 CCGTCTTATGCAACATTTGAGAACTTA 60.361 37.037 0.00 0.00 0.00 2.24
307 308 9.677567 GTCTTATGCAACATTTGAGAACTTAAA 57.322 29.630 0.00 0.00 0.00 1.52
327 328 9.153479 ACTTAAACTTAGAGGCTAGATCATGAT 57.847 33.333 8.25 8.25 0.00 2.45
477 498 1.067142 CGTAGGTGTTGCTAGCTCCAA 60.067 52.381 17.23 0.00 0.00 3.53
479 500 0.036875 AGGTGTTGCTAGCTCCAACC 59.963 55.000 17.23 16.93 41.33 3.77
493 514 3.243839 GCTCCAACCAAAGCTTGATGAAA 60.244 43.478 0.00 0.00 35.60 2.69
501 522 7.543947 ACCAAAGCTTGATGAAAAAGAAAAG 57.456 32.000 0.00 0.00 0.00 2.27
605 640 2.063979 ATCCCGAATCTCCCGTGCA 61.064 57.895 0.00 0.00 0.00 4.57
606 641 1.410850 ATCCCGAATCTCCCGTGCAT 61.411 55.000 0.00 0.00 0.00 3.96
607 642 0.757561 TCCCGAATCTCCCGTGCATA 60.758 55.000 0.00 0.00 0.00 3.14
608 643 0.600255 CCCGAATCTCCCGTGCATAC 60.600 60.000 0.00 0.00 0.00 2.39
609 644 0.389391 CCGAATCTCCCGTGCATACT 59.611 55.000 0.00 0.00 0.00 2.12
611 646 1.860950 CGAATCTCCCGTGCATACTTG 59.139 52.381 0.00 0.00 0.00 3.16
612 647 2.213499 GAATCTCCCGTGCATACTTGG 58.787 52.381 0.00 0.00 0.00 3.61
614 649 1.855295 TCTCCCGTGCATACTTGGTA 58.145 50.000 0.00 0.00 0.00 3.25
615 650 1.479323 TCTCCCGTGCATACTTGGTAC 59.521 52.381 0.00 0.00 0.00 3.34
647 685 4.116238 CTCGAGGTAGCCTTCATTTTCTC 58.884 47.826 3.91 0.00 31.76 2.87
648 686 2.860735 CGAGGTAGCCTTCATTTTCTCG 59.139 50.000 0.00 0.00 37.21 4.04
654 692 1.399791 GCCTTCATTTTCTCGCTCAGG 59.600 52.381 0.00 0.00 0.00 3.86
692 736 1.068610 GTCGCTTTGCTTGCACCATTA 60.069 47.619 0.00 0.00 0.00 1.90
701 745 3.244526 TGCTTGCACCATTAGAAGACTCA 60.245 43.478 0.00 0.00 0.00 3.41
796 840 0.900647 AGATATTCTCCTCCGGCCGG 60.901 60.000 39.13 39.13 0.00 6.13
820 864 1.340017 CCTCGTCCATGGACCATTTGT 60.340 52.381 34.05 0.00 41.76 2.83
861 905 3.360867 TCACTGTCACAACCCACAAATT 58.639 40.909 0.00 0.00 0.00 1.82
862 906 4.527944 TCACTGTCACAACCCACAAATTA 58.472 39.130 0.00 0.00 0.00 1.40
863 907 4.950475 TCACTGTCACAACCCACAAATTAA 59.050 37.500 0.00 0.00 0.00 1.40
864 908 5.596361 TCACTGTCACAACCCACAAATTAAT 59.404 36.000 0.00 0.00 0.00 1.40
895 939 0.520619 CGACGCAAGAGATCGTTCGA 60.521 55.000 0.00 0.00 39.22 3.71
948 1004 2.197283 AGCCAGCCAAGAAGAAGAAG 57.803 50.000 0.00 0.00 0.00 2.85
1440 1503 2.043980 CACCCTGGCGGCGTATTTT 61.044 57.895 9.37 0.00 33.26 1.82
1461 1524 1.227380 GATCGGGAAGCAGACGCAT 60.227 57.895 0.00 0.00 42.27 4.73
1470 1533 2.816958 CAGACGCATCGCAGCCTT 60.817 61.111 0.00 0.00 0.00 4.35
1473 1536 2.124983 ACGCATCGCAGCCTTGAT 60.125 55.556 0.00 0.00 0.00 2.57
1862 1934 7.754924 CGACTAATTGCTTCCATACAAATTTGT 59.245 33.333 25.99 25.99 44.86 2.83
1924 2004 6.408035 TGGAAATGTACAAATAACCGCTAGA 58.592 36.000 0.00 0.00 0.00 2.43
2051 2135 9.665719 TCATTTGTAAATGCTCTGTAAGTATCA 57.334 29.630 11.50 0.00 44.15 2.15
2053 2137 7.539712 TTGTAAATGCTCTGTAAGTATCAGC 57.460 36.000 0.00 0.00 33.76 4.26
2056 2144 6.674694 AAATGCTCTGTAAGTATCAGCTTG 57.325 37.500 0.00 0.00 33.76 4.01
2068 2167 9.331282 GTAAGTATCAGCTTGAGAAATAACCAT 57.669 33.333 0.00 0.00 0.00 3.55
2114 2214 5.404968 TCTGTGCAAAAATAAAAGCAATCCG 59.595 36.000 0.00 0.00 38.91 4.18
2122 2222 9.105206 CAAAAATAAAAGCAATCCGTTCATTTG 57.895 29.630 0.00 0.00 0.00 2.32
2136 2236 5.449304 CGTTCATTTGTGGGTTTACTCTTC 58.551 41.667 0.00 0.00 0.00 2.87
2137 2237 5.562113 CGTTCATTTGTGGGTTTACTCTTCC 60.562 44.000 0.00 0.00 0.00 3.46
2151 2251 1.062587 CTCTTCCGCGCAATTGGTTAG 59.937 52.381 8.75 3.18 0.00 2.34
2153 2253 0.606944 TTCCGCGCAATTGGTTAGGT 60.607 50.000 8.75 0.00 0.00 3.08
2155 2255 0.179174 CCGCGCAATTGGTTAGGTTC 60.179 55.000 8.75 0.00 0.00 3.62
2162 2262 4.412207 GCAATTGGTTAGGTTCATCGAAC 58.588 43.478 7.72 0.00 41.32 3.95
2182 2282 8.537049 TCGAACCGATACTTTTTATTTCTCAA 57.463 30.769 0.00 0.00 0.00 3.02
2220 2320 5.649782 ACCATTGCAAATAGGTGAAAGAG 57.350 39.130 17.57 0.00 32.04 2.85
2223 2323 2.446435 TGCAAATAGGTGAAAGAGGGC 58.554 47.619 0.00 0.00 0.00 5.19
2237 2337 4.881157 AAGAGGGCCTATTTACCATTGT 57.119 40.909 5.73 0.00 0.00 2.71
2245 2345 6.354130 GGCCTATTTACCATTGTTAGACTCA 58.646 40.000 0.00 0.00 0.00 3.41
2246 2346 6.998673 GGCCTATTTACCATTGTTAGACTCAT 59.001 38.462 0.00 0.00 0.00 2.90
2263 2363 7.939784 AGACTCATTTTAATCCCCAAACTAC 57.060 36.000 0.00 0.00 0.00 2.73
2311 2412 5.707495 ACCAAAAACTATTCCCACAACCTA 58.293 37.500 0.00 0.00 0.00 3.08
2336 2437 2.485814 GGGTTGACATTCAAGACTCAGC 59.514 50.000 0.00 0.00 37.00 4.26
2345 2446 1.000618 TCAAGACTCAGCAGCTGTGAG 59.999 52.381 29.18 29.18 45.94 3.51
2358 2459 4.382040 GCAGCTGTGAGAAACTGTAGGATA 60.382 45.833 16.64 0.00 32.65 2.59
2359 2460 5.347342 CAGCTGTGAGAAACTGTAGGATAG 58.653 45.833 5.25 0.00 0.00 2.08
2360 2461 5.020132 AGCTGTGAGAAACTGTAGGATAGT 58.980 41.667 0.00 0.00 0.00 2.12
2362 2463 6.663953 AGCTGTGAGAAACTGTAGGATAGTTA 59.336 38.462 0.00 0.00 37.39 2.24
2363 2464 7.178628 AGCTGTGAGAAACTGTAGGATAGTTAA 59.821 37.037 0.00 0.00 37.39 2.01
2364 2465 7.275999 GCTGTGAGAAACTGTAGGATAGTTAAC 59.724 40.741 0.00 0.00 37.39 2.01
2365 2466 8.185506 TGTGAGAAACTGTAGGATAGTTAACA 57.814 34.615 8.61 0.00 37.39 2.41
2366 2467 8.086522 TGTGAGAAACTGTAGGATAGTTAACAC 58.913 37.037 8.61 0.00 37.39 3.32
2367 2468 8.086522 GTGAGAAACTGTAGGATAGTTAACACA 58.913 37.037 8.61 1.28 37.39 3.72
2368 2469 8.644216 TGAGAAACTGTAGGATAGTTAACACAA 58.356 33.333 8.61 0.00 37.39 3.33
2369 2470 9.654663 GAGAAACTGTAGGATAGTTAACACAAT 57.345 33.333 8.61 0.00 37.39 2.71
2401 2502 8.095937 ACAGTTGAGTAAAGCAAATACCTAAC 57.904 34.615 0.00 0.00 0.00 2.34
2423 2524 9.309516 CTAACGGTATACAGTATTTCACACATT 57.690 33.333 9.15 0.00 0.00 2.71
2424 2525 7.766219 ACGGTATACAGTATTTCACACATTC 57.234 36.000 6.89 0.00 0.00 2.67
2440 2541 8.853077 TCACACATTCAAAAGATATCAAGAGT 57.147 30.769 5.32 0.00 0.00 3.24
2441 2542 9.288576 TCACACATTCAAAAGATATCAAGAGTT 57.711 29.630 5.32 0.00 0.00 3.01
2442 2543 9.338291 CACACATTCAAAAGATATCAAGAGTTG 57.662 33.333 5.32 2.13 0.00 3.16
2443 2544 9.071276 ACACATTCAAAAGATATCAAGAGTTGT 57.929 29.630 5.32 0.00 0.00 3.32
2444 2545 9.338291 CACATTCAAAAGATATCAAGAGTTGTG 57.662 33.333 5.32 6.81 0.00 3.33
2445 2546 9.288576 ACATTCAAAAGATATCAAGAGTTGTGA 57.711 29.630 5.32 0.00 0.00 3.58
2446 2547 9.552114 CATTCAAAAGATATCAAGAGTTGTGAC 57.448 33.333 5.32 0.00 0.00 3.67
2447 2548 8.675705 TTCAAAAGATATCAAGAGTTGTGACA 57.324 30.769 5.32 0.00 0.00 3.58
2448 2549 8.853077 TCAAAAGATATCAAGAGTTGTGACAT 57.147 30.769 5.32 0.00 0.00 3.06
2449 2550 9.942850 TCAAAAGATATCAAGAGTTGTGACATA 57.057 29.630 5.32 0.00 0.00 2.29
2526 2627 0.881118 GCAAATCAGCCTTTCCGACA 59.119 50.000 0.00 0.00 0.00 4.35
2534 2635 1.134788 AGCCTTTCCGACAATCTACCG 60.135 52.381 0.00 0.00 0.00 4.02
2553 2654 1.668294 CGGCACAAGAGGAGACAGT 59.332 57.895 0.00 0.00 0.00 3.55
2629 2730 9.838339 AATGTAACCATCTATTTTGTCCTCTAG 57.162 33.333 0.00 0.00 0.00 2.43
2630 2731 8.603898 TGTAACCATCTATTTTGTCCTCTAGA 57.396 34.615 0.00 0.00 0.00 2.43
2631 2732 9.213777 TGTAACCATCTATTTTGTCCTCTAGAT 57.786 33.333 0.00 0.00 32.49 1.98
2643 2744 7.876936 TTGTCCTCTAGATATTTAGTGTCGT 57.123 36.000 0.00 0.00 0.00 4.34
2644 2745 7.493743 TGTCCTCTAGATATTTAGTGTCGTC 57.506 40.000 0.00 0.00 0.00 4.20
2646 2747 5.178996 TCCTCTAGATATTTAGTGTCGTCGC 59.821 44.000 0.00 0.00 0.00 5.19
2647 2748 5.049612 CCTCTAGATATTTAGTGTCGTCGCA 60.050 44.000 0.00 0.00 0.00 5.10
2648 2749 5.745514 TCTAGATATTTAGTGTCGTCGCAC 58.254 41.667 10.56 10.56 39.51 5.34
2649 2750 4.365899 AGATATTTAGTGTCGTCGCACA 57.634 40.909 17.80 7.70 41.52 4.57
2650 2751 4.740268 AGATATTTAGTGTCGTCGCACAA 58.260 39.130 17.80 8.14 41.52 3.33
2651 2752 5.165676 AGATATTTAGTGTCGTCGCACAAA 58.834 37.500 17.80 15.38 41.52 2.83
2652 2753 5.636121 AGATATTTAGTGTCGTCGCACAAAA 59.364 36.000 17.80 10.88 41.52 2.44
2653 2754 3.307339 TTTAGTGTCGTCGCACAAAAC 57.693 42.857 17.80 0.00 41.52 2.43
2654 2755 2.212869 TAGTGTCGTCGCACAAAACT 57.787 45.000 17.80 2.06 41.52 2.66
2655 2756 2.212869 AGTGTCGTCGCACAAAACTA 57.787 45.000 17.80 0.00 41.52 2.24
2656 2757 2.542597 AGTGTCGTCGCACAAAACTAA 58.457 42.857 17.80 0.00 41.52 2.24
2657 2758 2.931325 AGTGTCGTCGCACAAAACTAAA 59.069 40.909 17.80 0.00 41.52 1.85
2658 2759 3.558418 AGTGTCGTCGCACAAAACTAAAT 59.442 39.130 17.80 0.00 41.52 1.40
2659 2760 4.034742 AGTGTCGTCGCACAAAACTAAATT 59.965 37.500 17.80 0.00 41.52 1.82
2660 2761 4.731480 GTGTCGTCGCACAAAACTAAATTT 59.269 37.500 12.81 0.00 39.07 1.82
2661 2762 5.902981 GTGTCGTCGCACAAAACTAAATTTA 59.097 36.000 12.81 0.00 39.07 1.40
2662 2763 5.902981 TGTCGTCGCACAAAACTAAATTTAC 59.097 36.000 0.00 0.00 0.00 2.01
2663 2764 5.055973 GTCGTCGCACAAAACTAAATTTACG 59.944 40.000 0.00 0.00 0.00 3.18
2664 2765 5.051173 TCGTCGCACAAAACTAAATTTACGA 60.051 36.000 0.00 0.00 33.56 3.43
2665 2766 5.616383 CGTCGCACAAAACTAAATTTACGAA 59.384 36.000 5.26 0.00 29.99 3.85
2666 2767 6.138858 CGTCGCACAAAACTAAATTTACGAAA 59.861 34.615 5.26 0.00 29.99 3.46
2667 2768 7.304735 CGTCGCACAAAACTAAATTTACGAAAA 60.305 33.333 5.26 0.00 29.99 2.29
2668 2769 8.312524 GTCGCACAAAACTAAATTTACGAAAAA 58.687 29.630 5.26 0.00 0.00 1.94
2669 2770 8.312524 TCGCACAAAACTAAATTTACGAAAAAC 58.687 29.630 0.00 0.00 0.00 2.43
2671 2772 8.312524 GCACAAAACTAAATTTACGAAAAACGA 58.687 29.630 0.00 0.00 45.77 3.85
2677 2778 8.376972 ACTAAATTTACGAAAAACGATGATGC 57.623 30.769 0.00 0.00 45.77 3.91
2678 2779 8.234546 ACTAAATTTACGAAAAACGATGATGCT 58.765 29.630 0.00 0.00 45.77 3.79
2697 2798 4.797743 TGCTAGCCTTCTGATTCTCTAGA 58.202 43.478 13.29 0.00 0.00 2.43
2729 2830 6.071108 TCCTTCCTCTACTCTGACAAATTCTG 60.071 42.308 0.00 0.00 0.00 3.02
2730 2831 5.667539 TCCTCTACTCTGACAAATTCTGG 57.332 43.478 0.00 0.00 0.00 3.86
2731 2832 4.467795 TCCTCTACTCTGACAAATTCTGGG 59.532 45.833 0.00 0.00 0.00 4.45
2732 2833 4.223923 CCTCTACTCTGACAAATTCTGGGT 59.776 45.833 0.00 0.00 39.98 4.51
2734 2835 2.508526 ACTCTGACAAATTCTGGGTGC 58.491 47.619 0.00 0.00 35.61 5.01
2744 2848 3.114616 CTGGGTGCGAGAGTTGCG 61.115 66.667 0.00 0.00 34.24 4.85
2818 2923 4.223255 TGACCCGTATATTTGTGACCTGAA 59.777 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.975040 TGAGCCAGGAGCCTCTTCTC 60.975 60.000 0.00 0.00 45.47 2.87
2 3 0.546267 TTGAGCCAGGAGCCTCTTCT 60.546 55.000 0.00 0.00 45.47 2.85
3 4 0.107752 CTTGAGCCAGGAGCCTCTTC 60.108 60.000 0.00 0.00 45.47 2.87
4 5 1.989620 CTTGAGCCAGGAGCCTCTT 59.010 57.895 0.00 0.00 45.47 2.85
5 6 2.668120 GCTTGAGCCAGGAGCCTCT 61.668 63.158 0.00 0.00 45.47 3.69
6 7 2.124778 GCTTGAGCCAGGAGCCTC 60.125 66.667 0.00 0.00 45.47 4.70
9 10 0.455005 GATTTGCTTGAGCCAGGAGC 59.545 55.000 0.00 0.00 41.18 4.70
10 11 0.731417 CGATTTGCTTGAGCCAGGAG 59.269 55.000 0.00 0.00 41.18 3.69
12 13 1.667724 CTACGATTTGCTTGAGCCAGG 59.332 52.381 0.00 0.00 41.18 4.45
14 15 1.003118 ACCTACGATTTGCTTGAGCCA 59.997 47.619 0.00 0.00 41.18 4.75
15 16 1.739067 ACCTACGATTTGCTTGAGCC 58.261 50.000 0.00 0.00 41.18 4.70
16 17 3.522553 AGTACCTACGATTTGCTTGAGC 58.477 45.455 0.00 0.00 42.50 4.26
17 18 5.000012 AGAGTACCTACGATTTGCTTGAG 58.000 43.478 0.00 0.00 0.00 3.02
18 19 4.705507 AGAGAGTACCTACGATTTGCTTGA 59.294 41.667 0.00 0.00 0.00 3.02
19 20 5.000012 AGAGAGTACCTACGATTTGCTTG 58.000 43.478 0.00 0.00 0.00 4.01
20 21 5.662674 AAGAGAGTACCTACGATTTGCTT 57.337 39.130 0.00 0.00 0.00 3.91
21 22 6.963083 ATAAGAGAGTACCTACGATTTGCT 57.037 37.500 0.00 0.00 0.00 3.91
22 23 7.873910 AGTATAAGAGAGTACCTACGATTTGC 58.126 38.462 0.00 0.00 0.00 3.68
23 24 9.881529 GAAGTATAAGAGAGTACCTACGATTTG 57.118 37.037 0.00 0.00 0.00 2.32
24 25 9.065798 GGAAGTATAAGAGAGTACCTACGATTT 57.934 37.037 0.00 0.00 0.00 2.17
25 26 7.387397 CGGAAGTATAAGAGAGTACCTACGATT 59.613 40.741 0.00 0.00 0.00 3.34
26 27 6.873076 CGGAAGTATAAGAGAGTACCTACGAT 59.127 42.308 0.00 0.00 0.00 3.73
27 28 6.219473 CGGAAGTATAAGAGAGTACCTACGA 58.781 44.000 0.00 0.00 0.00 3.43
28 29 5.107143 GCGGAAGTATAAGAGAGTACCTACG 60.107 48.000 0.00 0.00 0.00 3.51
29 30 5.181056 GGCGGAAGTATAAGAGAGTACCTAC 59.819 48.000 0.00 0.00 0.00 3.18
30 31 5.312079 GGCGGAAGTATAAGAGAGTACCTA 58.688 45.833 0.00 0.00 0.00 3.08
31 32 4.143543 GGCGGAAGTATAAGAGAGTACCT 58.856 47.826 0.00 0.00 0.00 3.08
32 33 3.058363 CGGCGGAAGTATAAGAGAGTACC 60.058 52.174 0.00 0.00 0.00 3.34
33 34 3.563390 ACGGCGGAAGTATAAGAGAGTAC 59.437 47.826 13.24 0.00 0.00 2.73
34 35 3.813443 ACGGCGGAAGTATAAGAGAGTA 58.187 45.455 13.24 0.00 0.00 2.59
35 36 2.652590 ACGGCGGAAGTATAAGAGAGT 58.347 47.619 13.24 0.00 0.00 3.24
36 37 3.712091 AACGGCGGAAGTATAAGAGAG 57.288 47.619 13.24 0.00 0.00 3.20
37 38 3.698040 AGAAACGGCGGAAGTATAAGAGA 59.302 43.478 13.24 0.00 0.00 3.10
38 39 4.043037 AGAAACGGCGGAAGTATAAGAG 57.957 45.455 13.24 0.00 0.00 2.85
39 40 5.581126 TTAGAAACGGCGGAAGTATAAGA 57.419 39.130 13.24 0.00 0.00 2.10
40 41 6.839820 ATTTAGAAACGGCGGAAGTATAAG 57.160 37.500 13.24 0.00 0.00 1.73
41 42 8.891671 AATATTTAGAAACGGCGGAAGTATAA 57.108 30.769 13.24 0.00 0.00 0.98
42 43 8.767085 CAAATATTTAGAAACGGCGGAAGTATA 58.233 33.333 13.24 0.50 0.00 1.47
43 44 7.281549 ACAAATATTTAGAAACGGCGGAAGTAT 59.718 33.333 13.24 1.43 0.00 2.12
44 45 6.594937 ACAAATATTTAGAAACGGCGGAAGTA 59.405 34.615 13.24 0.00 0.00 2.24
45 46 5.413523 ACAAATATTTAGAAACGGCGGAAGT 59.586 36.000 13.24 0.00 0.00 3.01
46 47 5.875930 ACAAATATTTAGAAACGGCGGAAG 58.124 37.500 13.24 0.00 0.00 3.46
47 48 5.644636 AGACAAATATTTAGAAACGGCGGAA 59.355 36.000 13.24 0.00 0.00 4.30
48 49 5.180271 AGACAAATATTTAGAAACGGCGGA 58.820 37.500 13.24 0.00 0.00 5.54
49 50 5.479716 AGACAAATATTTAGAAACGGCGG 57.520 39.130 13.24 0.00 0.00 6.13
50 51 7.241376 AGAAAGACAAATATTTAGAAACGGCG 58.759 34.615 4.80 4.80 0.00 6.46
51 52 9.704098 CTAGAAAGACAAATATTTAGAAACGGC 57.296 33.333 0.00 0.00 0.00 5.68
65 66 9.416284 ACCATTTAAAACCTCTAGAAAGACAAA 57.584 29.630 0.00 0.00 0.00 2.83
66 67 8.990163 ACCATTTAAAACCTCTAGAAAGACAA 57.010 30.769 0.00 0.00 0.00 3.18
67 68 8.990163 AACCATTTAAAACCTCTAGAAAGACA 57.010 30.769 0.00 0.00 0.00 3.41
76 77 8.889717 CGTATGTGATAACCATTTAAAACCTCT 58.110 33.333 0.00 0.00 0.00 3.69
77 78 8.126700 CCGTATGTGATAACCATTTAAAACCTC 58.873 37.037 0.00 0.00 0.00 3.85
78 79 7.830201 TCCGTATGTGATAACCATTTAAAACCT 59.170 33.333 0.00 0.00 0.00 3.50
79 80 7.987649 TCCGTATGTGATAACCATTTAAAACC 58.012 34.615 0.00 0.00 0.00 3.27
80 81 9.445786 CATCCGTATGTGATAACCATTTAAAAC 57.554 33.333 0.00 0.00 0.00 2.43
81 82 9.179909 ACATCCGTATGTGATAACCATTTAAAA 57.820 29.630 0.00 0.00 44.79 1.52
82 83 8.740123 ACATCCGTATGTGATAACCATTTAAA 57.260 30.769 0.00 0.00 44.79 1.52
88 89 9.689501 TCTATATACATCCGTATGTGATAACCA 57.310 33.333 3.56 0.00 45.99 3.67
89 90 9.947669 GTCTATATACATCCGTATGTGATAACC 57.052 37.037 3.56 0.00 45.99 2.85
126 127 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
127 128 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
128 129 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
129 130 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
130 131 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
131 132 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
132 133 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
133 134 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
134 135 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
135 136 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
136 137 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
137 138 6.765036 AGTGACTACATATGGAGCAAAATGAG 59.235 38.462 15.30 0.00 0.00 2.90
138 139 6.653020 AGTGACTACATATGGAGCAAAATGA 58.347 36.000 15.30 0.00 0.00 2.57
139 140 6.932356 AGTGACTACATATGGAGCAAAATG 57.068 37.500 15.30 0.00 0.00 2.32
140 141 6.886459 ACAAGTGACTACATATGGAGCAAAAT 59.114 34.615 15.30 0.00 0.00 1.82
141 142 6.237901 ACAAGTGACTACATATGGAGCAAAA 58.762 36.000 15.30 0.00 0.00 2.44
142 143 5.804639 ACAAGTGACTACATATGGAGCAAA 58.195 37.500 15.30 0.00 0.00 3.68
143 144 5.420725 ACAAGTGACTACATATGGAGCAA 57.579 39.130 15.30 0.16 0.00 3.91
144 145 5.046663 TCAACAAGTGACTACATATGGAGCA 60.047 40.000 15.30 10.95 0.00 4.26
145 146 5.419542 TCAACAAGTGACTACATATGGAGC 58.580 41.667 15.30 8.47 0.00 4.70
146 147 7.905604 TTTCAACAAGTGACTACATATGGAG 57.094 36.000 13.77 13.77 35.39 3.86
147 148 8.321353 AGATTTCAACAAGTGACTACATATGGA 58.679 33.333 7.80 0.00 35.39 3.41
148 149 8.498054 AGATTTCAACAAGTGACTACATATGG 57.502 34.615 7.80 0.00 35.39 2.74
149 150 9.376075 AGAGATTTCAACAAGTGACTACATATG 57.624 33.333 0.00 0.00 35.39 1.78
152 153 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
153 154 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
154 155 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
155 156 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
156 157 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
157 158 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
158 159 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
159 160 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
160 161 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
173 174 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
174 175 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
175 176 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
176 177 8.319146 TCTCCGTTCCTAAATATTTGTCTTTCT 58.681 33.333 11.05 0.00 0.00 2.52
177 178 8.488651 TCTCCGTTCCTAAATATTTGTCTTTC 57.511 34.615 11.05 0.00 0.00 2.62
178 179 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
179 180 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
180 181 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
181 182 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
182 183 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
183 184 9.765795 AATACTCTCTCCGTTCCTAAATATTTG 57.234 33.333 11.05 1.40 0.00 2.32
191 192 9.412460 TGTAAATAAATACTCTCTCCGTTCCTA 57.588 33.333 0.00 0.00 0.00 2.94
192 193 8.302515 TGTAAATAAATACTCTCTCCGTTCCT 57.697 34.615 0.00 0.00 0.00 3.36
193 194 8.411683 TCTGTAAATAAATACTCTCTCCGTTCC 58.588 37.037 0.00 0.00 0.00 3.62
194 195 9.453325 CTCTGTAAATAAATACTCTCTCCGTTC 57.547 37.037 0.00 0.00 0.00 3.95
195 196 8.414778 CCTCTGTAAATAAATACTCTCTCCGTT 58.585 37.037 0.00 0.00 0.00 4.44
196 197 7.014422 CCCTCTGTAAATAAATACTCTCTCCGT 59.986 40.741 0.00 0.00 0.00 4.69
197 198 7.230913 TCCCTCTGTAAATAAATACTCTCTCCG 59.769 40.741 0.00 0.00 0.00 4.63
198 199 8.480133 TCCCTCTGTAAATAAATACTCTCTCC 57.520 38.462 0.00 0.00 0.00 3.71
199 200 9.138596 ACTCCCTCTGTAAATAAATACTCTCTC 57.861 37.037 0.00 0.00 0.00 3.20
202 203 9.710818 TGTACTCCCTCTGTAAATAAATACTCT 57.289 33.333 0.00 0.00 0.00 3.24
203 204 9.747293 GTGTACTCCCTCTGTAAATAAATACTC 57.253 37.037 0.00 0.00 0.00 2.59
204 205 8.411683 CGTGTACTCCCTCTGTAAATAAATACT 58.588 37.037 0.00 0.00 0.00 2.12
205 206 8.193438 ACGTGTACTCCCTCTGTAAATAAATAC 58.807 37.037 0.00 0.00 0.00 1.89
206 207 8.297470 ACGTGTACTCCCTCTGTAAATAAATA 57.703 34.615 0.00 0.00 0.00 1.40
207 208 7.179076 ACGTGTACTCCCTCTGTAAATAAAT 57.821 36.000 0.00 0.00 0.00 1.40
208 209 6.594788 ACGTGTACTCCCTCTGTAAATAAA 57.405 37.500 0.00 0.00 0.00 1.40
209 210 6.594788 AACGTGTACTCCCTCTGTAAATAA 57.405 37.500 0.00 0.00 0.00 1.40
210 211 6.095440 GGTAACGTGTACTCCCTCTGTAAATA 59.905 42.308 0.00 0.00 0.00 1.40
211 212 5.105595 GGTAACGTGTACTCCCTCTGTAAAT 60.106 44.000 0.00 0.00 0.00 1.40
212 213 4.218417 GGTAACGTGTACTCCCTCTGTAAA 59.782 45.833 0.00 0.00 0.00 2.01
213 214 3.758554 GGTAACGTGTACTCCCTCTGTAA 59.241 47.826 0.00 0.00 0.00 2.41
214 215 3.347216 GGTAACGTGTACTCCCTCTGTA 58.653 50.000 0.00 0.00 0.00 2.74
215 216 2.165998 GGTAACGTGTACTCCCTCTGT 58.834 52.381 0.00 0.00 0.00 3.41
216 217 2.935481 GGTAACGTGTACTCCCTCTG 57.065 55.000 0.00 0.00 0.00 3.35
227 228 7.879573 CCACTTTGGTAATATCCGGTAACGTG 61.880 46.154 0.00 0.00 46.56 4.49
228 229 5.912090 CCACTTTGGTAATATCCGGTAACGT 60.912 44.000 0.00 0.00 46.56 3.99
230 231 5.996669 CCACTTTGGTAATATCCGGTAAC 57.003 43.478 0.00 0.00 31.35 2.50
244 245 2.638480 TGAAGGTCTGACCACTTTGG 57.362 50.000 27.48 0.00 41.95 3.28
245 246 6.633500 TTTATTGAAGGTCTGACCACTTTG 57.367 37.500 27.48 0.00 41.95 2.77
247 248 9.614792 GTATATTTATTGAAGGTCTGACCACTT 57.385 33.333 27.48 14.70 41.95 3.16
248 249 7.926555 CGTATATTTATTGAAGGTCTGACCACT 59.073 37.037 27.48 14.73 41.95 4.00
249 250 7.924412 TCGTATATTTATTGAAGGTCTGACCAC 59.076 37.037 27.48 20.12 41.95 4.16
250 251 7.924412 GTCGTATATTTATTGAAGGTCTGACCA 59.076 37.037 27.48 8.31 41.95 4.02
251 252 7.114529 CGTCGTATATTTATTGAAGGTCTGACC 59.885 40.741 19.20 19.20 38.99 4.02
252 253 7.859377 TCGTCGTATATTTATTGAAGGTCTGAC 59.141 37.037 0.00 0.00 0.00 3.51
253 254 7.859377 GTCGTCGTATATTTATTGAAGGTCTGA 59.141 37.037 0.00 0.00 0.00 3.27
254 255 7.114529 GGTCGTCGTATATTTATTGAAGGTCTG 59.885 40.741 0.00 0.00 0.00 3.51
255 256 7.144000 GGTCGTCGTATATTTATTGAAGGTCT 58.856 38.462 0.00 0.00 0.00 3.85
256 257 6.087291 CGGTCGTCGTATATTTATTGAAGGTC 59.913 42.308 0.00 0.00 0.00 3.85
257 258 5.916883 CGGTCGTCGTATATTTATTGAAGGT 59.083 40.000 0.00 0.00 0.00 3.50
258 259 6.372014 CGGTCGTCGTATATTTATTGAAGG 57.628 41.667 0.00 0.00 0.00 3.46
274 275 1.705256 TGTTGCATAAGACGGTCGTC 58.295 50.000 14.79 14.79 44.86 4.20
275 276 2.380084 ATGTTGCATAAGACGGTCGT 57.620 45.000 1.89 1.71 0.00 4.34
276 277 3.124466 TCAAATGTTGCATAAGACGGTCG 59.876 43.478 1.89 0.00 0.00 4.79
277 278 4.391830 TCTCAAATGTTGCATAAGACGGTC 59.608 41.667 0.00 0.00 0.00 4.79
278 279 4.323417 TCTCAAATGTTGCATAAGACGGT 58.677 39.130 0.00 0.00 0.00 4.83
279 280 4.944962 TCTCAAATGTTGCATAAGACGG 57.055 40.909 0.00 0.00 0.00 4.79
280 281 5.931532 AGTTCTCAAATGTTGCATAAGACG 58.068 37.500 0.00 0.00 0.00 4.18
281 282 9.677567 TTTAAGTTCTCAAATGTTGCATAAGAC 57.322 29.630 0.00 0.00 0.00 3.01
282 283 9.677567 GTTTAAGTTCTCAAATGTTGCATAAGA 57.322 29.630 0.00 0.00 0.00 2.10
283 284 9.683069 AGTTTAAGTTCTCAAATGTTGCATAAG 57.317 29.630 0.00 0.00 0.00 1.73
286 287 9.683069 CTAAGTTTAAGTTCTCAAATGTTGCAT 57.317 29.630 0.00 0.00 0.00 3.96
287 288 8.898761 TCTAAGTTTAAGTTCTCAAATGTTGCA 58.101 29.630 0.00 0.00 0.00 4.08
288 289 9.387123 CTCTAAGTTTAAGTTCTCAAATGTTGC 57.613 33.333 0.00 0.00 0.00 4.17
289 290 9.884465 CCTCTAAGTTTAAGTTCTCAAATGTTG 57.116 33.333 0.00 0.00 0.00 3.33
290 291 8.568794 GCCTCTAAGTTTAAGTTCTCAAATGTT 58.431 33.333 0.00 0.00 0.00 2.71
291 292 7.939588 AGCCTCTAAGTTTAAGTTCTCAAATGT 59.060 33.333 0.00 0.00 0.00 2.71
292 293 8.329203 AGCCTCTAAGTTTAAGTTCTCAAATG 57.671 34.615 0.00 0.00 0.00 2.32
293 294 9.660180 CTAGCCTCTAAGTTTAAGTTCTCAAAT 57.340 33.333 0.00 0.00 0.00 2.32
294 295 8.867097 TCTAGCCTCTAAGTTTAAGTTCTCAAA 58.133 33.333 0.00 0.00 0.00 2.69
295 296 8.418597 TCTAGCCTCTAAGTTTAAGTTCTCAA 57.581 34.615 0.00 0.00 0.00 3.02
296 297 8.596781 ATCTAGCCTCTAAGTTTAAGTTCTCA 57.403 34.615 0.00 0.00 0.00 3.27
300 301 8.982723 TCATGATCTAGCCTCTAAGTTTAAGTT 58.017 33.333 0.00 0.00 0.00 2.66
305 306 9.692325 AAAAATCATGATCTAGCCTCTAAGTTT 57.308 29.630 9.06 0.00 0.00 2.66
338 339 0.478072 AACCCATGAGTTGTGCCTCA 59.522 50.000 0.00 0.00 45.06 3.86
340 341 1.620822 GAAACCCATGAGTTGTGCCT 58.379 50.000 0.00 0.00 0.00 4.75
341 342 0.240945 CGAAACCCATGAGTTGTGCC 59.759 55.000 0.00 0.00 0.00 5.01
342 343 1.069227 GTCGAAACCCATGAGTTGTGC 60.069 52.381 0.00 0.00 0.00 4.57
343 344 1.535462 GGTCGAAACCCATGAGTTGTG 59.465 52.381 0.00 0.00 39.93 3.33
344 345 1.876416 CGGTCGAAACCCATGAGTTGT 60.876 52.381 0.00 0.00 43.21 3.32
345 346 0.796312 CGGTCGAAACCCATGAGTTG 59.204 55.000 0.00 0.00 43.21 3.16
346 347 0.321298 CCGGTCGAAACCCATGAGTT 60.321 55.000 0.00 0.00 43.21 3.01
347 348 1.295423 CCGGTCGAAACCCATGAGT 59.705 57.895 0.00 0.00 43.21 3.41
349 350 2.046700 GCCGGTCGAAACCCATGA 60.047 61.111 1.90 0.00 43.21 3.07
477 498 7.330262 TCTTTTCTTTTTCATCAAGCTTTGGT 58.670 30.769 0.00 0.00 0.00 3.67
479 500 8.538039 GTCTCTTTTCTTTTTCATCAAGCTTTG 58.462 33.333 0.00 0.00 0.00 2.77
493 514 6.067350 AGGAATGAGCAAGTCTCTTTTCTTT 58.933 36.000 0.00 0.00 40.16 2.52
501 522 3.620821 GCAACTAGGAATGAGCAAGTCTC 59.379 47.826 0.00 0.00 42.23 3.36
605 640 5.417894 TCGAGATCACAACTGTACCAAGTAT 59.582 40.000 0.00 0.00 0.00 2.12
606 641 4.763279 TCGAGATCACAACTGTACCAAGTA 59.237 41.667 0.00 0.00 0.00 2.24
607 642 3.572682 TCGAGATCACAACTGTACCAAGT 59.427 43.478 0.00 0.00 0.00 3.16
608 643 4.169508 CTCGAGATCACAACTGTACCAAG 58.830 47.826 6.58 0.00 0.00 3.61
609 644 3.056821 CCTCGAGATCACAACTGTACCAA 60.057 47.826 15.71 0.00 0.00 3.67
611 646 2.492484 ACCTCGAGATCACAACTGTACC 59.508 50.000 15.71 0.00 0.00 3.34
612 647 3.851976 ACCTCGAGATCACAACTGTAC 57.148 47.619 15.71 0.00 0.00 2.90
614 649 2.164624 GCTACCTCGAGATCACAACTGT 59.835 50.000 15.71 2.00 0.00 3.55
615 650 2.480416 GGCTACCTCGAGATCACAACTG 60.480 54.545 15.71 0.00 0.00 3.16
647 685 0.819259 CTCCTCTCTCCTCCTGAGCG 60.819 65.000 0.00 0.00 41.18 5.03
648 686 1.109323 GCTCCTCTCTCCTCCTGAGC 61.109 65.000 0.00 0.00 41.18 4.26
654 692 1.528309 CCCGAGCTCCTCTCTCCTC 60.528 68.421 8.47 0.00 39.70 3.71
667 705 2.863153 CAAGCAAAGCGACCCGAG 59.137 61.111 0.00 0.00 0.00 4.63
692 736 2.022718 AGCAAGGAGGTGAGTCTTCT 57.977 50.000 0.00 0.00 0.00 2.85
701 745 0.037447 GAGGAGCAAAGCAAGGAGGT 59.963 55.000 0.00 0.00 0.00 3.85
796 840 4.176752 GTCCATGGACGAGGGGGC 62.177 72.222 28.52 3.94 35.30 5.80
861 905 2.164827 TGCGTCGTGAGCTTCCTTATTA 59.835 45.455 0.00 0.00 35.28 0.98
862 906 1.067142 TGCGTCGTGAGCTTCCTTATT 60.067 47.619 0.00 0.00 35.28 1.40
863 907 0.530744 TGCGTCGTGAGCTTCCTTAT 59.469 50.000 0.00 0.00 35.28 1.73
864 908 0.315886 TTGCGTCGTGAGCTTCCTTA 59.684 50.000 0.00 0.00 35.28 2.69
895 939 0.669318 TTTCTTGGCGAACGAGCGAT 60.669 50.000 5.91 0.00 38.18 4.58
1431 1494 0.179040 TCCCGATCCCAAAATACGCC 60.179 55.000 0.00 0.00 0.00 5.68
1434 1497 2.618709 CTGCTTCCCGATCCCAAAATAC 59.381 50.000 0.00 0.00 0.00 1.89
1437 1500 0.695924 TCTGCTTCCCGATCCCAAAA 59.304 50.000 0.00 0.00 0.00 2.44
1440 1503 2.721167 CGTCTGCTTCCCGATCCCA 61.721 63.158 0.00 0.00 0.00 4.37
1461 1524 1.737735 CACGTCATCAAGGCTGCGA 60.738 57.895 0.00 0.00 0.00 5.10
1470 1533 1.634757 GGTTCATGCGCACGTCATCA 61.635 55.000 14.90 0.00 0.00 3.07
1473 1536 2.027073 GAGGTTCATGCGCACGTCA 61.027 57.895 14.90 0.00 0.00 4.35
1596 1659 3.041940 GCCGTGGTGGAAGACGTG 61.042 66.667 0.00 0.00 42.00 4.49
1862 1934 8.232913 TGAATGCAGTCAGTATGTAGTATGTA 57.767 34.615 13.76 0.00 37.40 2.29
2049 2133 6.899393 ACAAATGGTTATTTCTCAAGCTGA 57.101 33.333 0.00 0.00 34.34 4.26
2051 2135 9.023962 TGATTACAAATGGTTATTTCTCAAGCT 57.976 29.630 0.00 0.00 34.34 3.74
2112 2212 3.818773 AGAGTAAACCCACAAATGAACGG 59.181 43.478 0.00 0.00 0.00 4.44
2114 2214 5.562113 CGGAAGAGTAAACCCACAAATGAAC 60.562 44.000 0.00 0.00 0.00 3.18
2122 2222 1.632948 GCGCGGAAGAGTAAACCCAC 61.633 60.000 8.83 0.00 0.00 4.61
2136 2236 0.179174 GAACCTAACCAATTGCGCGG 60.179 55.000 8.83 0.00 0.00 6.46
2137 2237 0.519519 TGAACCTAACCAATTGCGCG 59.480 50.000 0.00 0.00 0.00 6.86
2153 2253 9.158233 AGAAATAAAAAGTATCGGTTCGATGAA 57.842 29.630 12.35 0.00 46.43 2.57
2155 2255 8.600625 TGAGAAATAAAAAGTATCGGTTCGATG 58.399 33.333 12.35 0.00 46.43 3.84
2198 2298 4.463891 CCTCTTTCACCTATTTGCAATGGT 59.536 41.667 0.00 6.72 0.00 3.55
2218 2318 5.763698 GTCTAACAATGGTAAATAGGCCCTC 59.236 44.000 0.00 0.00 0.00 4.30
2220 2320 5.691896 AGTCTAACAATGGTAAATAGGCCC 58.308 41.667 0.00 0.00 0.00 5.80
2237 2337 9.457436 GTAGTTTGGGGATTAAAATGAGTCTAA 57.543 33.333 0.00 0.00 0.00 2.10
2245 2345 6.160483 TGAGGGTAGTTTGGGGATTAAAAT 57.840 37.500 0.00 0.00 0.00 1.82
2246 2346 5.602291 TGAGGGTAGTTTGGGGATTAAAA 57.398 39.130 0.00 0.00 0.00 1.52
2263 2363 5.130477 TCCAGCTAAGTATTTACCTTGAGGG 59.870 44.000 1.54 0.00 40.27 4.30
2277 2378 6.208797 GGAATAGTTTTTGGTTCCAGCTAAGT 59.791 38.462 0.00 0.00 39.86 2.24
2311 2412 4.042062 TGAGTCTTGAATGTCAACCCATCT 59.958 41.667 0.00 0.00 32.21 2.90
2317 2418 3.364764 GCTGCTGAGTCTTGAATGTCAAC 60.365 47.826 0.00 0.00 32.21 3.18
2336 2437 3.667497 TCCTACAGTTTCTCACAGCTG 57.333 47.619 13.48 13.48 35.31 4.24
2359 2460 9.783256 ACTCAACTGTTTAAGAATTGTGTTAAC 57.217 29.630 0.00 0.00 0.00 2.01
2364 2465 8.958043 GCTTTACTCAACTGTTTAAGAATTGTG 58.042 33.333 6.68 0.00 0.00 3.33
2365 2466 8.682710 TGCTTTACTCAACTGTTTAAGAATTGT 58.317 29.630 6.68 0.00 0.00 2.71
2366 2467 9.515020 TTGCTTTACTCAACTGTTTAAGAATTG 57.485 29.630 6.68 0.00 0.00 2.32
2371 2472 9.394477 GGTATTTGCTTTACTCAACTGTTTAAG 57.606 33.333 0.00 0.00 0.00 1.85
2372 2473 9.127277 AGGTATTTGCTTTACTCAACTGTTTAA 57.873 29.630 0.00 0.00 0.00 1.52
2373 2474 8.685838 AGGTATTTGCTTTACTCAACTGTTTA 57.314 30.769 0.00 0.00 0.00 2.01
2374 2475 7.582667 AGGTATTTGCTTTACTCAACTGTTT 57.417 32.000 0.00 0.00 0.00 2.83
2401 2502 7.764695 TGAATGTGTGAAATACTGTATACCG 57.235 36.000 0.00 0.00 0.00 4.02
2418 2519 9.338291 CACAACTCTTGATATCTTTTGAATGTG 57.662 33.333 3.98 7.68 0.00 3.21
2423 2524 8.853077 ATGTCACAACTCTTGATATCTTTTGA 57.147 30.769 3.98 0.00 0.00 2.69
2435 2536 9.684448 CGTTGAGATATATATGTCACAACTCTT 57.316 33.333 30.66 7.07 42.59 2.85
2437 2538 8.297426 TCCGTTGAGATATATATGTCACAACTC 58.703 37.037 30.66 17.79 42.59 3.01
2442 2543 9.737427 CCTTATCCGTTGAGATATATATGTCAC 57.263 37.037 19.31 13.97 35.96 3.67
2443 2544 9.695155 TCCTTATCCGTTGAGATATATATGTCA 57.305 33.333 16.47 16.47 34.62 3.58
2445 2546 9.922477 TCTCCTTATCCGTTGAGATATATATGT 57.078 33.333 0.00 0.00 0.00 2.29
2447 2548 9.581289 CCTCTCCTTATCCGTTGAGATATATAT 57.419 37.037 0.00 0.00 33.68 0.86
2448 2549 7.999545 CCCTCTCCTTATCCGTTGAGATATATA 59.000 40.741 0.00 0.00 33.68 0.86
2449 2550 6.836527 CCCTCTCCTTATCCGTTGAGATATAT 59.163 42.308 0.00 0.00 33.68 0.86
2489 2590 2.981898 TGCAGATCAGATGTTCACCTG 58.018 47.619 0.00 0.00 0.00 4.00
2490 2591 3.708403 TTGCAGATCAGATGTTCACCT 57.292 42.857 0.00 0.00 0.00 4.00
2492 2593 5.556355 TGATTTGCAGATCAGATGTTCAC 57.444 39.130 15.50 0.00 32.50 3.18
2526 2627 0.460284 CTCTTGTGCCGCGGTAGATT 60.460 55.000 28.70 0.00 0.00 2.40
2534 2635 1.739562 CTGTCTCCTCTTGTGCCGC 60.740 63.158 0.00 0.00 0.00 6.53
2604 2705 9.213777 TCTAGAGGACAAAATAGATGGTTACAT 57.786 33.333 0.00 0.00 40.85 2.29
2605 2706 8.603898 TCTAGAGGACAAAATAGATGGTTACA 57.396 34.615 0.00 0.00 0.00 2.41
2616 2717 9.751542 CGACACTAAATATCTAGAGGACAAAAT 57.248 33.333 0.00 0.00 0.00 1.82
2617 2718 8.746530 ACGACACTAAATATCTAGAGGACAAAA 58.253 33.333 0.00 0.00 0.00 2.44
2618 2719 8.289939 ACGACACTAAATATCTAGAGGACAAA 57.710 34.615 0.00 0.00 0.00 2.83
2619 2720 7.254692 CGACGACACTAAATATCTAGAGGACAA 60.255 40.741 0.00 0.00 0.00 3.18
2621 2722 6.592166 CGACGACACTAAATATCTAGAGGAC 58.408 44.000 0.00 0.00 0.00 3.85
2623 2724 5.049612 TGCGACGACACTAAATATCTAGAGG 60.050 44.000 0.00 0.00 0.00 3.69
2626 2727 5.507974 TGTGCGACGACACTAAATATCTAG 58.492 41.667 18.51 0.00 41.30 2.43
2627 2728 5.488645 TGTGCGACGACACTAAATATCTA 57.511 39.130 18.51 0.00 41.30 1.98
2628 2729 4.365899 TGTGCGACGACACTAAATATCT 57.634 40.909 18.51 0.00 41.30 1.98
2629 2730 5.444586 TTTGTGCGACGACACTAAATATC 57.555 39.130 18.51 0.00 41.30 1.63
2630 2731 5.407387 AGTTTTGTGCGACGACACTAAATAT 59.593 36.000 22.77 16.41 43.55 1.28
2631 2732 4.746115 AGTTTTGTGCGACGACACTAAATA 59.254 37.500 22.77 9.37 43.55 1.40
2633 2734 2.931325 AGTTTTGTGCGACGACACTAAA 59.069 40.909 19.18 19.18 41.00 1.85
2634 2735 2.542597 AGTTTTGTGCGACGACACTAA 58.457 42.857 18.51 15.37 41.30 2.24
2635 2736 2.212869 AGTTTTGTGCGACGACACTA 57.787 45.000 18.51 11.38 41.30 2.74
2636 2737 2.212869 TAGTTTTGTGCGACGACACT 57.787 45.000 18.51 8.30 41.30 3.55
2637 2738 3.307339 TTTAGTTTTGTGCGACGACAC 57.693 42.857 13.26 13.26 41.10 3.67
2638 2739 4.539509 AATTTAGTTTTGTGCGACGACA 57.460 36.364 0.00 0.00 0.00 4.35
2639 2740 5.055973 CGTAAATTTAGTTTTGTGCGACGAC 59.944 40.000 0.00 0.00 30.01 4.34
2640 2741 5.051173 TCGTAAATTTAGTTTTGTGCGACGA 60.051 36.000 0.00 0.00 33.42 4.20
2641 2742 5.131890 TCGTAAATTTAGTTTTGTGCGACG 58.868 37.500 0.00 0.00 0.00 5.12
2643 2744 7.966157 TTTTCGTAAATTTAGTTTTGTGCGA 57.034 28.000 0.00 0.00 0.00 5.10
2644 2745 7.311497 CGTTTTTCGTAAATTTAGTTTTGTGCG 59.689 33.333 0.00 0.00 34.52 5.34
2651 2752 8.846607 GCATCATCGTTTTTCGTAAATTTAGTT 58.153 29.630 0.00 0.00 40.80 2.24
2652 2753 8.234546 AGCATCATCGTTTTTCGTAAATTTAGT 58.765 29.630 0.00 0.00 40.80 2.24
2653 2754 8.601243 AGCATCATCGTTTTTCGTAAATTTAG 57.399 30.769 0.00 0.00 40.80 1.85
2654 2755 9.697250 CTAGCATCATCGTTTTTCGTAAATTTA 57.303 29.630 0.00 0.00 40.80 1.40
2655 2756 7.218204 GCTAGCATCATCGTTTTTCGTAAATTT 59.782 33.333 10.63 0.00 40.80 1.82
2656 2757 6.687105 GCTAGCATCATCGTTTTTCGTAAATT 59.313 34.615 10.63 0.00 40.80 1.82
2657 2758 6.192360 GCTAGCATCATCGTTTTTCGTAAAT 58.808 36.000 10.63 0.00 40.80 1.40
2658 2759 5.446741 GGCTAGCATCATCGTTTTTCGTAAA 60.447 40.000 18.24 0.00 40.80 2.01
2659 2760 4.033587 GGCTAGCATCATCGTTTTTCGTAA 59.966 41.667 18.24 0.00 40.80 3.18
2660 2761 3.554324 GGCTAGCATCATCGTTTTTCGTA 59.446 43.478 18.24 0.00 40.80 3.43
2661 2762 2.351726 GGCTAGCATCATCGTTTTTCGT 59.648 45.455 18.24 0.00 40.80 3.85
2662 2763 2.609459 AGGCTAGCATCATCGTTTTTCG 59.391 45.455 18.24 0.00 41.41 3.46
2663 2764 4.333926 AGAAGGCTAGCATCATCGTTTTTC 59.666 41.667 18.24 0.07 0.00 2.29
2664 2765 4.095483 CAGAAGGCTAGCATCATCGTTTTT 59.905 41.667 18.24 0.00 0.00 1.94
2665 2766 3.624861 CAGAAGGCTAGCATCATCGTTTT 59.375 43.478 18.24 0.00 0.00 2.43
2666 2767 3.118629 TCAGAAGGCTAGCATCATCGTTT 60.119 43.478 18.24 0.00 0.00 3.60
2667 2768 2.432146 TCAGAAGGCTAGCATCATCGTT 59.568 45.455 18.24 0.00 0.00 3.85
2668 2769 2.034878 TCAGAAGGCTAGCATCATCGT 58.965 47.619 18.24 0.00 0.00 3.73
2669 2770 2.808523 TCAGAAGGCTAGCATCATCG 57.191 50.000 18.24 7.18 0.00 3.84
2670 2771 4.897140 AGAATCAGAAGGCTAGCATCATC 58.103 43.478 18.24 4.88 0.00 2.92
2671 2772 4.594062 AGAGAATCAGAAGGCTAGCATCAT 59.406 41.667 18.24 0.00 37.82 2.45
2672 2773 3.966006 AGAGAATCAGAAGGCTAGCATCA 59.034 43.478 18.24 0.00 37.82 3.07
2673 2774 4.605640 AGAGAATCAGAAGGCTAGCATC 57.394 45.455 18.24 14.01 37.82 3.91
2674 2775 5.392995 TCTAGAGAATCAGAAGGCTAGCAT 58.607 41.667 18.24 6.55 37.82 3.79
2675 2776 4.797743 TCTAGAGAATCAGAAGGCTAGCA 58.202 43.478 18.24 0.00 37.82 3.49
2676 2777 5.982890 ATCTAGAGAATCAGAAGGCTAGC 57.017 43.478 6.04 6.04 37.82 3.42
2697 2798 9.661954 TTGTCAGAGTAGAGGAAGGATAATTAT 57.338 33.333 0.00 0.00 0.00 1.28
2708 2809 4.467795 CCCAGAATTTGTCAGAGTAGAGGA 59.532 45.833 0.00 0.00 0.00 3.71
2711 2812 4.563580 GCACCCAGAATTTGTCAGAGTAGA 60.564 45.833 0.00 0.00 0.00 2.59
2714 2815 2.508526 GCACCCAGAATTTGTCAGAGT 58.491 47.619 0.00 0.00 0.00 3.24
2757 2862 0.824109 TCTCCTACAGCATCAACCCG 59.176 55.000 0.00 0.00 0.00 5.28
2761 2866 5.480422 TGACTAAAGTCTCCTACAGCATCAA 59.520 40.000 11.22 0.00 44.99 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.