>input_sequence_67876
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----------------------ATGGTGTTCTTCGACGTGGAGACGGCGGCGGCGCCGTCCCCCTCCGACTCGTCCGGCC
AGTGGTGGCTGCTGGAGTTCGGGGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGCTCGCCAGCTACTCCACCCTCATC
CGCCCGGGCGACCCCTCCGCCGTCTCCAGGCGCTTCTCGGGCGACCCCTCCCTCTCCGCCGCGTTCCGCGCCGCGCCGCC
CTTCGCCGACGTGGCCGACGACATCTTCGCGCTCCTCGACGGCCGCGTCTGGGCGGGCCACAACATCCGGCGCTTCGACT
GCCACCGCGTCCGGGAGGCCTTCGCGGCGGCCGGCCGAGCCGCGCCGGAGCCCGTGGCCGTCGTCGACTCGCTCAGCGTG
CTCGCCCGGGGGTTCGGCCGCCGCGCCGGGGACCTCAAGATGGCCACCCTGGCGGCGTATTTTGGGATCGGGAAGCAGAC
GCATCGCAGCCTTGATGACGTGCGCATGAACCTCGAGGTGCTCAAGCACTGCGCCGCCGTGCTCATGCTCGAGTCCAACC
TCCCCGCCGGCGTGCTCCCTGGCGCCGACGACGGCGCAGTCACCAGGCGCAGGGCCGCCACG---TCTTCCACCACGGCG
CCCGCGACTCCTCCTCGTCCTCCTCCTGCCGCCGCGGTTCTGAAGGTGAACGGGAG---GTCGTGCAAGAGGGACAGCAC
GGGGAAGGTGGTGACGCCGGCGAAGGGGGCAGCGACGGCTACCTCTACCGGCGGC---CGGAGAGTGCGCCGGCCAATGA
CGACGACGCCGTTCAGCATGATCCTCCGGCACTCGAGGGCCATCGTCAGATGA---------------------------
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>chr3D_1_TraesCS3D01G022300
CGAGAAGAGGCTCCTGGCTCAAGCAAATCGTAGGTACTCTCTTATACTTCCGCCGTTTCTAAATATTTGTCTTTCTAGAG
GTTTTAAATGGTTATCACATACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCCATATGTAGTC
ACTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGAGAGTATTTATTTACAGAGGGAGTACACGTTACCGGAT
ATTACCAAAGTGGTCAGACCTTCAATAAATATACGACGACCGTCTTATGCAACATTTGAGAACTTAAACTTAGAGGCTAG
ATCATGATTTTTTACTCATGAGGCACAACTCATG------GGTTTCGACCGGCGGCGGCCTCCTCCAGCGATGGCGAGGG
------AGTATAAGGGCTAGCGGTGGAGAACCCGGTCGATCGAGGA----CGTAACCGGCAGATGGTTAGTGCCGTAGGT
GTTGCTAGCT----CCAACCAAAGCTTGATGAAAAAGAAAAGAGACTTGCTCATTCCTAGTTGCATGCTTGTGAAACTTG
GAATCTCCCATCC-----ATACGTGCAAGCTATCT---GCCG------CCGCCATGCACGCATCCCGAATCTCCCGTGCA
TACTTGGTACA---GTTGTGATCTCGAGGTAGCCTTCATTTTCTCGCTCAGGAGGAGAGAGGAGC------TCGGGTCGC
TTTGCTTGCACCATTAGAAGACTCACCTCCTTGCTTTGCTCCTCCCGTCGAGTCTTCTCCATCCAAACGAAACCCTACGC
CGCCGTCCAAACCAAGCAACAGATATTCTCCTCCGGCCGGCCCCCTCGTCCATGGACCATTTGTCAAATCCTATATATAC
GAATCACTGTCACAACCCACAAATTAATAAGGAAGCTCACGACGCAAGAGATCGTTCGATCGCTCGTTCGCCAAGAAACC
AACCACGA-----GCAAAGCCAGCCAAGA-------AGAAGAAGCCACCATACGTGCGTAGCTAGCTAAT-------GGC
GACGGAGGCCGCCAAGGAGGAGATGGTGTTCTTCGACGTGGAGACGGCGGCGGCGCCGTCCCCCTCCGACTCGTCCGGCC
AGTGGTGGCTGCTGGAGTTCGGGGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGCTCGCCAGCTACTCCACCCTCATC
CGCCCGGGCGACCCCTCCGCCGTCTCCAGGCGCTTCTCGGGCGACCCCTCCCTCTCCGCCGCGTTCCGCGCCGCGCCGCC
CTTCGCCGACGTGGCCGACGACATCTTCGCGCTCCTCGACGGCCGCGTCTGGGCGGGCCACAACATCCGGCGCTTCGACT
GCCACCGCGTCCGGGAGGCCTTCGCGGCGGCCGGCCGAGCCGCGCCGGAGCCCGTGGCCGTCGTCGACTCGCTCAGCGTG
CTCGCCCGGGGGTTCGGCCGCCGCGCCGGGGACCTCAAGATGGCCACCCTGGCGGCGTATTTTGGGATCGGGAAGCAGAC
GCATCGCAGCCTTGATGACGTGCGCATGAACCTCGAGGTGCTCAAGCACTGCGCCGCCGTGCTCATGCTCGAGTCCAACC
TCCCCGCCGGCGTGCTCCCTGGCGCCGACGACGGCGCAGTCACCAGGCGCAGGGCCGCCACG---TCTTCCACCACGGCG
CCCGCGACTCCTCCTCGTCCTCCTCCTGCCGCCGCGGTTCTGAAGGTGAACGGGAG---GTCGTGCAAGAGGGACAGCAC
GGGGAAGGTGGTGACGCCGGCGAAGGGGGCAGCGACGGCTACCTCTACCGGCGGC---CGGAGAGTGCGCCGGCCAATGA
CGACGACGCCGTTCAGCATGATCCTCCGGCACTCGAGGGCCATCGTCAGATGATCCATGGAATGGGTCGACTAATTGCTT
CCATACAAATTTGTACATACTACATACTGACTGCATTCATTCATTTGTACAT------GGAAATGTACAAATAACC--GC
TAGATAGCTAGCTAGGTAGCCGTGTCCATATTTAACCAAGGTTTAATTAGG--TACTTGTTGTAAATTATCTTCAT--GT
TGTTGTAAAAACGCAACACACATTTCATTCATTTGTAAATGCTCTGTAAGTATCAGC----TTGAGAAATAACC------
-----ATTTGTAATCACTTCATT-GTAAATCTGTGCAAAAATAAAAGCAATCCGTTCATTTGTGGGTTTACTCTTCCGCG
CAATTGGTTAGGTTCATCGAACCGATACTTTTTATTTCTCAATGAAATTGCTGTGGCACCATTGCAAATAGGTGAAAGAG
GGCCTATTTACCATTGTTAGACTCATTTTAATCCCCAAACTACCCTCAAGG-TAAATACTTAGCTGGAACCAAAAACTAT
TCCCACAACCTAGATGGGTTGACATTCAAGACTCAGCAGCTGTGAGAAACTGTAGGATAGTTAACACAATTCTTAAACAG
TTGAGTAAAGCAAATACCTAACGGTATACAGTATTTCACACATTCAAAAGATATCAAGAGTTGTGACATATATATCTCAA
CGGATAAGGAGAGGGCAGGATAGCCTGAGCAGGTGAACATCTGATCTGCAAATCAGCCTTTCCGACAATCTACCGCGGCA
CAAGAGGAGACAGTATACATCACCATATATTTATAGATCTACTAGTACCTTTTCAAATAGTATAATGTAACCATCTATTT
TGTCCTCTAGATATTTAGTGTCGTCGCACAAAACTAAATTTACGAAAAACGATGATGCTAGCCTTCTGATTCTCTAGATA
ATTATCCTTCCTCTACTCTGACAAATTCTGGGTGC---GAGAGTTGCGCAGAA-AAAATTACGGGTTGATGCTGTAGGAG
ACTTTAGTCACGCCTTTCTTGACCCGTATATTTGTGACCTGAAAGA
>chr3A_284
CTTATCCAGCGTTC------------------------------------------------------------------
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---------------------------------------------------------GAGGACTTGACCTTAGAGGCTAG
ATCATGAGTTTTTACTCACGTTAGGAGGCACATATTCGTAGGTTTCGACCGGCAGCGGCCTCCTCCAGCGATGGCGAGGG
AGAGGGAGTATAAGGGCTAGCGGTGGAGAACCCGCTCGATCGAGGA----CGTAACCGGCAGATGGTTAGTGCCGTAGGT
GTTGCTAGCTCCAACA--------------------------AGACTTGCTCATTCCTAGTTGCATGCTTGTGAAACTTG
GAATCTCCCATCCCATCCATACGTGCAAGCTATCTGCCGCCG------CCGCCATGCACGCATCCCGAATCTCCCGTGCT
CCTCTCATCGAGTCGTTGTGATCTCGAGGTAGCCTTCGTTTTCTTCCTCAGAAGGAGAG----GAGCTCGATCGAGTCGC
TTTGCTTGCACCATTGGAAGACTCGCCTCCTTGCTTTGCTCCTCCCGTCGAGTCTTCTCCATCCAAACGAAACCCTACGC
CGCCGTCCAAACCAAGCAACAAATATTCTCCTCCGGCCGCCCCCCTCGTCCATGGACCATTTGCCAAATCCTATATACAC
GAATCACTGTCACAACCCACAAATC---AAGGAAGCTCACGACGCAAGAGATCGTTCGCTCGCTCGTTCGCCAAGAAACC
AACCACGATCCCAGCAAAGCCAGCCAAGA-------AGAAGAAACCACCCTACGTGCGTACCTAGCTAAT-------GGC
GACGGAGGCCGCCAAGAAGGAGATGGTGTTCTTCGACGTGGAGACGGCGGCGGCGCCGTCGCCCTCCGACTCGTCCGGCC
AGTGGTGGCTGTTGGAGTTCGGCGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGCTCGCCAGCTACTCCACCCTCATC
CGCCCGGGGGACCCCTCCGCCGTCTCCAGGCGCTTCTCGGGCGACCCCTCCCTCTCCGCCGCGTTCCGCGCCGCGCCGCC
CTTCGCCGACGTGGCCGACGACATCTTCGCGCTCCTCGACGGCCGCGTCTGGGCGGGCCACAACATCCGCCGCTTCGACT
GCCACCGCGTCCGCGAGGCCTTCGCGGCGGCCGGCCGCGCAGCGCCGGAGCCCGTGGCCGTCGTCGACTCCCTCAACGTG
CTCGCCCAGGGGTTCGGCCGCCGCGCCGGGGACCTCAAGATGGCCACCCTGGCCGCCTACTTCGGGATCGGGAAGCAGAC
GCACCGCAGCCTCGACGACGTGCGCATGAACCTCGAGGTGCTCAAGCACTGCGCCGCCGTGCTCATGCTCGAGTCCAACC
TCCCCGCCGGCGTGCTCCCCGGCGCCGACGACGGCGCCGTCACCAGGCGCAGGGCCGCGACGTCTTCTACCACGACGGCG
CCCGCGACTCCTCCTCGTCCTCCTCCTGCCGCCGCGGTTCTGAAGGTGAACGGGAGGTCGTCGTGCAAGAGGGACAGCAC
GGGGAAGGTGGTGGCGGCAGCGAGGGGAGCGGCGACGGCCACGACTAGCGGTGGTGCTCGGAGAGTGCGCCGGCCAATGA
CGACGCCGCCGTTCAGCATGGTCCTTAGGCACTCCAGGGCCATCGTGAGATGATCC---------GTCGACTAATTGCTT
CCATACAAATTTGCA--------------------TTCATTAATTTGTAGATGGAAATGGAAAGGTACAAATAACCATTC
TAGCTAGCTAGCTAGGTAGCCGTGTTCATATTTACCCAATGTCTAATTAGATATATGTACGTTGTTAACCACCTTCTCGT
TGTTGTAAAAACGCAACGCACATTTCATTCATTTGCAATTGTATAAATGG--CCCGTAAGTCTCAGCTGGAGCATTGTAA
CCCATAGTTGTACCCACCTCTATTGTAAATCTGTACAAAATATAAGAAAATGCATTCATTT-------------------
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>chr3B_357
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------------------------------------------TTTCGACCGGCGGCGGCCTCCTCCGGCGACGGCGAGGG
AG----------AGGGCTGGCGGTGGAGAACCCGGTCGGTCGAGGACGTACGTAACCGGCAGATGGTTAGTGCCGTAGGT
GTTCCTAGCTAGCTCCACCAAAAGCTTGATGAACAAGAAAATTCCTAGTT---------GTTGCATGCTTGTGAAACTTG
GAATCTCCCATCCCATCCATACGTGCAAGCTATCTGCCGCCGTCACCGCCGCCATGCACGCATCCCGAATCCCCCGTGCT
CCTCCCATCGAGTCGTTGTGATCTCGAGGTAGCCTTCATTTTCTTCATCAGAAGGAGAGAGGAGAGCTCGATCGGGTCGC
TTTGCTTGCACCATTGGAAGACTCGCCTCTTTGCTTTGCTCCACCCGTCGAGTCTTCTCCATCCCAACGAAACCCTACGC
CGCCGTCCAAACCAAGCAACAGATATTCTCCTCCGGCCGCCCCCCTCGTCCATGGACCATTTGCCAAGTCCTATATATGC
GAATCACTGTCACAACCCACAAATC---AAGGAAGCTCACGACGCAAGAGATCGTC--------CGTTCGCCAAGAAACC
AACAACCACG--AGCAAAGCCAGCCAAGGGCCGGGGAGAAGAAACCACCATACGTACGTAGCTAGCTAATCATCAATGGC
GACGGAG---GCCAAGGAGGAGATGGTGTTCTTCGACGTGGAGACGGCGGCGGCGCCGTCCCCCACCGACGCGTCCACCC
AGTGGTGGCTGCTGGAGTTCGGGGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGCTCTCCAGCTACTCCACCCTCATC
CGCCCGGGGGACCCCGCCGCCGTCTCCAGGCGCTTCTCGGGCGACCCCGCCCTCTCCGCCGCGTTCCGCGCCGCGCCGCC
CTTCGCCGACGTGGCCGACGACATCTTCGCGCTCCTCCACGGCCGCGTCTGGGCGGGCCACAACATCCGCCGCTTCGACT
GCCACCGCGTCCGCGACGCCTTCGCCGCGGCCGGCCGCGCCGCCCCGGAGCCAGTGGCCGTCGTCGACTCGCTCAGCGTG
CTGGCACAGGGGTTCGGCCGCCGCGCCGGGGACCTCAAGATGGCCACCCTGGCCGCCTACTTCGGGATCGGGAAGCAGAC
GCACCGCAGCCTCGACGACGTGCGCATGAACCTCGAGGTGCTCAAGCACTGCGCCGCCGTGCTCATGCTCGAGTCCAACC
TCCCCGCTGGCGTGCTCCCTGGTGCCGACGACGGCGCAGTCACCAGGCGCAGGGCCGCGACGTCTTCCACCACGACGGCG
ACCGCGACTCCTCCTCGTCCTCCTCCTGCCCCCGCGGTTCTGAAGGTGAACGGCAGGTCGTCGTGCAAGAGGGACAGCAC
GGGGAAGGTGGTGACGGCGGCGAAGGGGGCGGCGACGGCGACCTCTACCGGTGGC---CGGAGAGTGCGACGGCCCATGA
CGACGACGCCGTTCAGCATGGTCCTCCGGCACTCGAGGGCCATCGTCAGATGATCCATGGAATGGGTCGACTAATTGCTT
CCATACAAATTTGCACATACTACATACTGACTGCATTCATTCACTTGTACATGGAAAGGGAAATGTACAAATAACCATGC
TAGCTAGCTAGCTAGGTAGCCCTGTCCATATTTAACCAAGGCTTAATTAGATATACTTGTTGTAAATTATCTTCAT--GT
TGTTGTAAACACGCAACACACATTTCATGCATTTGTAAATGCTCTGTAAGTACCCGTACGTTTCAGAAATAACC------
-----AGTTGTAATCACTTCATTTGTAAATCTGTGCAAAAATAATAGCAATTCATTCATTTATGGGTTTACTCTTTTGCG
CAATTGGTTAAGCTAATCGAAGCGATA-TTTTTATTTCTCAGTGAAATTATTGTGGTGCCATTGCAAATAGGTGAAACAT
GGTCTATTTACCATTGATAGACTCGCTTTAATCCCCAAACTATCCTCAAGGATAAATGCTTAGCTGGAACCAAAAACTAT
TCCCACAACCTGGATGGATTGACATTCAAGACTCAGGAGCTGTGACAAACTGTAGGATCAATTCTT---------AACAG
TCCACTAAAGCAAATACCTAATGGTATGCACTATTTCATACATATAAAAGATATCTATAG----------TATATCTCAA
CGGATAAGGAGAGGGCAGGATAGCCTGAGGTG--GAACATCTGATCTGCAAATCAGCCTTTCCGACGATCTACCACGGCA
CAAGAGGAGACAGAATACATCACCATATATTTATAGATCTACTAGTACCTTTTCAAATAGTATATGTAAATATTTATAGA
TCTACTAGCACAAGAGGAGACAGCGGACATC----------------------------AGCCTTCTGATTCTCTAGGTA
ATTATCCTCCCACTTCTCTGACAAATTCTACTAGTTTTGAGAGTTGCACAGAAGAAAATTATGGGCTGATGCTGTAGGAG
ACCTTAGTCACGCCTTTCTTGACCCGTATATTTGTGACCTGATAGA
>SNPs
-SSSSSS--SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S-S------------
-------S----------S-SSSSSSSS-S---S----------------------------------------------
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-----------------S-S-------------S-------S--------------------------------------
-------------------------------------------------------------------------------S
SSSS-SS-SS----------------------------------SS-----S------------S---------------
---------------S--------S-------------------------------------------------------
---------------------------------------S-----------------------S----------------
------------------------SSSS------------------------------S---------------------
-------------------------------------------S------------------------------------
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--------S-----------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------S-----------------------S------------------------------------------
-------S---------------------------------------------S--S--S--S-----------------
---S--------S--S----------------------------------------------------------------
----------------------------------------------------------S---------S----S------
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----------------S-------------S--------S-----------S----------------------------
--------------------S-----------------------------------------------------------
-------------S------------------------------------------------------------------
---S----------------------------------------------S-----------------------------
----------------------------------------------------S-S-S------S----------------
------S--------------------------------------------S-S-------S-------------SS---
----------S-S-S------S-----S-------------S-------SS-----SS-------------------S-S
--S-------------S-------SS----------------S--------------S----------------------
-----------S-----S------------------S--------S------------SSS-SSSSSSSSSSSSS-----
-SS-S----------------S-----S--S-------S----SS----------S-S--SSSSSSSSSS----------
-----------------------------SS-SS--------------------------------S-------S-----
-------------S--------------------------------------------------SSSS--SSS-SSSSSS
-S-S--SSSSSS-SSSSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S--
--------S--S--S--------------SSSS-S------------S-------------S---S--------------
--S---------------------------------------S---
>forward_31
-----------TCCTGGCTCAAGCAAATCGT-------------------------------------------------
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>reverse_1494
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-----------------------------------------------------GGCGTATTTTGGGATCGGGA-------
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>forward_500
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AGGTGTTGCTAGCTCCAACC------------------------------------------------------------
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>reverse_2236
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---------------------------------------------------------------------------CCGCG
CAATTGGTTAGGTTC-----------------------------------------------------------------
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