Multiple sequence alignment - TraesCS3D01G017600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G017600 chr3D 100.000 4224 0 0 1 4224 6016417 6012194 0.000000e+00 7801.0
1 TraesCS3D01G017600 chr3A 91.308 2531 126 38 1461 3956 15087323 15089794 0.000000e+00 3369.0
2 TraesCS3D01G017600 chr3A 89.143 1354 82 30 71 1377 15085564 15086899 0.000000e+00 1626.0
3 TraesCS3D01G017600 chr3B 87.609 1953 180 37 2195 4122 7609859 7611774 0.000000e+00 2209.0
4 TraesCS3D01G017600 chr3B 90.275 1347 63 17 71 1378 7606877 7608194 0.000000e+00 1700.0
5 TraesCS3D01G017600 chr3B 91.358 729 37 11 1476 2178 7609051 7609779 0.000000e+00 974.0
6 TraesCS3D01G017600 chr3B 98.684 76 1 0 1 76 7606777 7606852 7.370000e-28 135.0
7 TraesCS3D01G017600 chr3B 93.750 80 5 0 1375 1454 7608232 7608311 2.060000e-23 121.0
8 TraesCS3D01G017600 chr4A 93.056 72 1 4 4121 4189 670947419 670947489 7.470000e-18 102.0
9 TraesCS3D01G017600 chr4A 85.227 88 5 7 4121 4204 45680591 45680674 2.710000e-12 84.2
10 TraesCS3D01G017600 chr7D 90.278 72 3 3 4121 4189 29876376 29876446 1.620000e-14 91.6
11 TraesCS3D01G017600 chr4D 85.714 91 5 6 4116 4199 352127803 352127892 5.820000e-14 89.8
12 TraesCS3D01G017600 chr4D 83.673 98 8 6 4110 4204 402527917 402528009 7.520000e-13 86.1
13 TraesCS3D01G017600 chr2A 87.059 85 2 6 4121 4202 205493731 205493809 2.090000e-13 87.9
14 TraesCS3D01G017600 chr2A 85.057 87 5 7 4112 4190 617178795 617178881 9.730000e-12 82.4
15 TraesCS3D01G017600 chr6B 84.615 91 8 5 4121 4205 225872723 225872633 7.520000e-13 86.1
16 TraesCS3D01G017600 chr4B 83.673 98 8 6 4110 4204 498374446 498374538 7.520000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G017600 chr3D 6012194 6016417 4223 True 7801.0 7801 100.0000 1 4224 1 chr3D.!!$R1 4223
1 TraesCS3D01G017600 chr3A 15085564 15089794 4230 False 2497.5 3369 90.2255 71 3956 2 chr3A.!!$F1 3885
2 TraesCS3D01G017600 chr3B 7606777 7611774 4997 False 1027.8 2209 92.3352 1 4122 5 chr3B.!!$F1 4121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 936 0.251653 ACAGTTCCTAGCCCAGTCGA 60.252 55.0 0.00 0.0 0.00 4.20 F
862 937 0.457851 CAGTTCCTAGCCCAGTCGAG 59.542 60.0 0.00 0.0 0.00 4.04 F
2121 3058 0.581529 TTTTCTGCAGTTGCGACGAG 59.418 50.0 14.67 0.0 45.83 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2536 3540 0.169672 CAGAAGGCATTGCTGGAACG 59.830 55.000 8.82 0.0 0.0 3.95 R
2669 3697 2.697751 CAGTATGGACAGAGAGGGAAGG 59.302 54.545 0.00 0.0 0.0 3.46 R
3431 4473 0.182775 ATGATAACCGGGGTCTTGCC 59.817 55.000 6.32 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.270305 CGTGTCTTGTGGAGATGGTGT 60.270 52.381 0.00 0.00 36.61 4.16
76 77 1.145803 CCGTGAACGAGAAGTTTCCC 58.854 55.000 4.03 0.00 44.35 3.97
78 79 2.059541 CGTGAACGAGAAGTTTCCCTC 58.940 52.381 0.00 0.00 44.35 4.30
261 293 2.283529 GGTGAAGAGCTCCACCCGA 61.284 63.158 24.25 0.00 45.30 5.14
266 298 1.067821 GAAGAGCTCCACCCGATACTG 59.932 57.143 10.93 0.00 0.00 2.74
296 328 4.695928 GGAGTAGGCTAAGTTCAGGTTTTG 59.304 45.833 0.00 0.00 0.00 2.44
420 457 4.885426 CCCCCATTGTCCTCATCG 57.115 61.111 0.00 0.00 0.00 3.84
497 538 2.407268 TGATGCCATCATTGCCGAC 58.593 52.632 2.53 0.00 33.59 4.79
532 573 2.186903 CATCGTTGTCTCCCCCGG 59.813 66.667 0.00 0.00 0.00 5.73
556 597 1.634865 ATCACCACCGATGCCATGGA 61.635 55.000 18.40 0.31 36.94 3.41
557 598 1.820906 CACCACCGATGCCATGGAG 60.821 63.158 18.40 2.76 36.94 3.86
586 651 0.723981 GTTGAACTCGGCAGCAGATC 59.276 55.000 0.00 0.00 0.00 2.75
613 678 0.671781 CTCTGCCGTTCCTGTTCCTG 60.672 60.000 0.00 0.00 0.00 3.86
620 685 0.606604 GTTCCTGTTCCTGTAGCGGA 59.393 55.000 0.00 0.00 0.00 5.54
625 690 1.272490 CTGTTCCTGTAGCGGACTCAA 59.728 52.381 0.00 0.00 31.44 3.02
664 729 2.282958 ACAAGACGGCCCTCGAGA 60.283 61.111 15.71 0.00 42.43 4.04
707 772 2.111878 GGCAGCCATACCGCTCAT 59.888 61.111 6.55 0.00 36.82 2.90
713 778 1.302033 CCATACCGCTCATGCCCTC 60.302 63.158 0.00 0.00 35.36 4.30
738 804 1.557443 GATCGCCGGCGGTAATGAAG 61.557 60.000 44.95 17.43 40.25 3.02
739 805 3.937062 CGCCGGCGGTAATGAAGC 61.937 66.667 40.50 9.21 35.56 3.86
746 812 1.348036 GGCGGTAATGAAGCCCTAGAT 59.652 52.381 0.00 0.00 44.80 1.98
752 818 4.464597 GGTAATGAAGCCCTAGATCGATCT 59.535 45.833 29.58 29.58 40.86 2.75
753 819 4.533919 AATGAAGCCCTAGATCGATCTG 57.466 45.455 33.22 22.81 37.76 2.90
754 820 1.615883 TGAAGCCCTAGATCGATCTGC 59.384 52.381 33.22 27.34 37.76 4.26
755 821 1.615883 GAAGCCCTAGATCGATCTGCA 59.384 52.381 33.22 16.68 37.76 4.41
770 840 4.034510 CGATCTGCAGGTTGATTAACTTCC 59.965 45.833 15.13 0.00 36.99 3.46
783 853 9.603357 GTTGATTAACTTCCGTCTCCTGAGACA 62.603 44.444 23.10 5.81 43.80 3.41
810 885 3.081804 CCTAATTTATCCACGCCATCCC 58.918 50.000 0.00 0.00 0.00 3.85
811 886 2.746279 AATTTATCCACGCCATCCCA 57.254 45.000 0.00 0.00 0.00 4.37
851 926 1.765904 TGGTTCTGTGCACAGTTCCTA 59.234 47.619 36.51 27.85 44.12 2.94
861 936 0.251653 ACAGTTCCTAGCCCAGTCGA 60.252 55.000 0.00 0.00 0.00 4.20
862 937 0.457851 CAGTTCCTAGCCCAGTCGAG 59.542 60.000 0.00 0.00 0.00 4.04
863 938 0.684805 AGTTCCTAGCCCAGTCGAGG 60.685 60.000 0.00 0.00 0.00 4.63
867 942 1.830408 CTAGCCCAGTCGAGGAGGG 60.830 68.421 11.48 11.48 45.68 4.30
1126 1212 4.536765 GAAATCCAGGTCTCTCTCTCTCT 58.463 47.826 0.00 0.00 0.00 3.10
1211 1302 4.263572 CAAGCCGGTGGTGGTGGA 62.264 66.667 1.90 0.00 0.00 4.02
1214 1305 2.282887 GCCGGTGGTGGTGGATTT 60.283 61.111 1.90 0.00 0.00 2.17
1215 1306 2.635443 GCCGGTGGTGGTGGATTTG 61.635 63.158 1.90 0.00 0.00 2.32
1216 1307 1.976474 CCGGTGGTGGTGGATTTGG 60.976 63.158 0.00 0.00 0.00 3.28
1217 1308 2.635443 CGGTGGTGGTGGATTTGGC 61.635 63.158 0.00 0.00 0.00 4.52
1218 1309 2.635443 GGTGGTGGTGGATTTGGCG 61.635 63.158 0.00 0.00 0.00 5.69
1219 1310 2.282816 TGGTGGTGGATTTGGCGG 60.283 61.111 0.00 0.00 0.00 6.13
1381 1514 2.097466 CGGGTAACTCCACAATTCATGC 59.903 50.000 0.00 0.00 38.11 4.06
1439 1572 3.553508 GCAGGACATTGCATTTGAACAGT 60.554 43.478 4.32 0.00 43.53 3.55
1542 2447 7.382488 CCAACACTTGATCGTCATACCTAATAG 59.618 40.741 0.00 0.00 0.00 1.73
1543 2448 6.982852 ACACTTGATCGTCATACCTAATAGG 58.017 40.000 4.46 4.46 42.49 2.57
1765 2682 3.248266 GCTCATTGCTGCTAAAAACCAG 58.752 45.455 0.00 0.00 38.95 4.00
1866 2783 6.393990 CGGGTAAATTCAAATTTGTGGATGA 58.606 36.000 17.47 0.00 38.90 2.92
2051 2985 7.211966 AGCTTCTGATGGTATTGAAATATGC 57.788 36.000 0.00 0.00 0.00 3.14
2098 3035 3.448660 ACCAGCAGGCATATTTTTCTTCC 59.551 43.478 0.00 0.00 39.06 3.46
2101 3038 5.481105 CAGCAGGCATATTTTTCTTCCAAA 58.519 37.500 0.00 0.00 0.00 3.28
2115 3052 4.370917 TCTTCCAAATTTTCTGCAGTTGC 58.629 39.130 14.67 0.00 42.50 4.17
2119 3056 2.036556 AATTTTCTGCAGTTGCGACG 57.963 45.000 14.67 0.00 45.83 5.12
2121 3058 0.581529 TTTTCTGCAGTTGCGACGAG 59.418 50.000 14.67 0.00 45.83 4.18
2242 3243 2.352960 CGATAGTCCTTCCTTGCAAAGC 59.647 50.000 0.00 0.00 44.44 3.51
2243 3244 3.615155 GATAGTCCTTCCTTGCAAAGCT 58.385 45.455 0.00 0.00 44.44 3.74
2244 3245 1.613836 AGTCCTTCCTTGCAAAGCTG 58.386 50.000 0.00 0.00 44.44 4.24
2270 3272 5.926214 AAGCATGATGATCTCTGAAATCG 57.074 39.130 0.00 0.00 0.00 3.34
2278 3282 6.932960 TGATGATCTCTGAAATCGTTATGCAT 59.067 34.615 3.79 3.79 0.00 3.96
2280 3284 5.698089 TGATCTCTGAAATCGTTATGCATCC 59.302 40.000 0.19 0.00 0.00 3.51
2305 3309 3.454082 TCCCAGTGTGCATACATCATACA 59.546 43.478 16.44 0.00 39.39 2.29
2430 3434 6.993308 TGCACAGTAAGATACACTTTTGGTTA 59.007 34.615 0.00 0.00 39.72 2.85
2578 3582 1.806542 GAAGAATTCACCGCAGAAGCA 59.193 47.619 8.44 0.00 46.62 3.91
2611 3615 9.998106 GTGAACTATTATGGTCCAAGTATGTAT 57.002 33.333 0.00 0.00 0.00 2.29
2619 3623 9.521841 TTATGGTCCAAGTATGTATTTCAAACA 57.478 29.630 0.00 0.00 0.00 2.83
2669 3697 3.485877 GCACATTACCTCGAAGTTGCATC 60.486 47.826 4.13 0.00 0.00 3.91
2673 3701 2.100605 ACCTCGAAGTTGCATCCTTC 57.899 50.000 13.85 13.85 35.94 3.46
3422 4464 6.777782 TGGACTGGGCATTTTTGATAATTTT 58.222 32.000 0.00 0.00 0.00 1.82
3430 4472 7.609918 GGGCATTTTTGATAATTTTGTACCCTT 59.390 33.333 0.00 0.00 0.00 3.95
3431 4473 8.450180 GGCATTTTTGATAATTTTGTACCCTTG 58.550 33.333 0.00 0.00 0.00 3.61
3442 4484 2.598787 TACCCTTGGCAAGACCCCG 61.599 63.158 28.18 10.88 37.83 5.73
3448 4490 0.034863 TTGGCAAGACCCCGGTTATC 60.035 55.000 0.00 0.00 37.83 1.75
3449 4491 1.202099 TGGCAAGACCCCGGTTATCA 61.202 55.000 0.00 0.00 37.83 2.15
3450 4492 0.182775 GGCAAGACCCCGGTTATCAT 59.817 55.000 0.00 0.00 0.00 2.45
3451 4493 1.409661 GGCAAGACCCCGGTTATCATT 60.410 52.381 0.00 0.00 0.00 2.57
3452 4494 2.158726 GGCAAGACCCCGGTTATCATTA 60.159 50.000 0.00 0.00 0.00 1.90
3453 4495 3.547746 GCAAGACCCCGGTTATCATTAA 58.452 45.455 0.00 0.00 0.00 1.40
3454 4496 3.949113 GCAAGACCCCGGTTATCATTAAA 59.051 43.478 0.00 0.00 0.00 1.52
3455 4497 4.399934 GCAAGACCCCGGTTATCATTAAAA 59.600 41.667 0.00 0.00 0.00 1.52
3456 4498 5.105675 GCAAGACCCCGGTTATCATTAAAAA 60.106 40.000 0.00 0.00 0.00 1.94
3491 4533 2.821991 ACCTGGCTAATGCGATAGAC 57.178 50.000 0.00 0.00 40.82 2.59
3498 4540 5.666462 TGGCTAATGCGATAGACTGTAAAA 58.334 37.500 3.41 0.00 40.82 1.52
3606 4648 9.825972 CTATATGTTGATTCGTTGAACAAAAGT 57.174 29.630 0.00 0.00 33.50 2.66
3617 4659 5.163794 CGTTGAACAAAAGTGTACCTTCTGT 60.164 40.000 0.00 0.00 35.86 3.41
3645 4687 6.707608 TGCAGATGGACAAGCTATATGTAAAG 59.292 38.462 0.00 0.00 30.32 1.85
3657 4699 8.478775 AGCTATATGTAAAGTGGTCAGATGTA 57.521 34.615 0.00 0.00 0.00 2.29
3717 4759 8.207545 AGTGTCCTATCAAAGATAGAAATGTCC 58.792 37.037 14.03 0.00 0.00 4.02
3722 4764 9.712305 CCTATCAAAGATAGAAATGTCCGTATT 57.288 33.333 14.03 0.00 0.00 1.89
3815 4858 3.641906 TGGCTCTTAGTCTTACCATAGGC 59.358 47.826 0.00 0.00 0.00 3.93
3828 4871 4.255510 ACCATAGGCCATTCTGTCAATT 57.744 40.909 5.01 0.00 0.00 2.32
3836 4879 4.219288 GGCCATTCTGTCAATTTTCAGTCT 59.781 41.667 0.00 0.00 33.89 3.24
3841 4884 6.609237 TTCTGTCAATTTTCAGTCTGTCTG 57.391 37.500 0.00 0.00 44.85 3.51
3853 4896 2.072298 GTCTGTCTGCTTAACTGCCTG 58.928 52.381 0.00 0.00 0.00 4.85
3861 4904 1.613437 GCTTAACTGCCTGCCTTTTCA 59.387 47.619 0.00 0.00 0.00 2.69
3871 4914 2.634453 CCTGCCTTTTCATCCCTTTGTT 59.366 45.455 0.00 0.00 0.00 2.83
3881 4924 7.695480 TTTCATCCCTTTGTTGATCGATAAA 57.305 32.000 0.00 4.93 0.00 1.40
3915 4958 7.466746 TTGTCTCCATGGAAAATAAGAAAGG 57.533 36.000 17.00 0.00 0.00 3.11
3972 5015 3.270877 GTTGTCAGTCCAAGTCACACTT 58.729 45.455 0.00 0.00 39.39 3.16
3999 5042 6.094464 TCAAGATGTGTCATCAAGGCTAATTG 59.906 38.462 11.47 5.53 0.00 2.32
4006 5049 7.279981 TGTGTCATCAAGGCTAATTGTATGTAC 59.720 37.037 0.00 0.00 0.00 2.90
4009 5052 8.893727 GTCATCAAGGCTAATTGTATGTACTTT 58.106 33.333 0.00 0.00 0.00 2.66
4034 5077 7.217200 TGGGTGAAGTGAATATATAGCAAGAC 58.783 38.462 0.00 0.00 0.00 3.01
4113 5156 5.009811 ACTGTAGAACACCTGTTGTAGTCTC 59.990 44.000 0.00 0.00 37.51 3.36
4122 5165 5.921408 CACCTGTTGTAGTCTCTTCACTTAC 59.079 44.000 0.00 0.00 0.00 2.34
4123 5166 5.834204 ACCTGTTGTAGTCTCTTCACTTACT 59.166 40.000 0.00 0.00 0.00 2.24
4124 5167 6.016108 ACCTGTTGTAGTCTCTTCACTTACTC 60.016 42.308 0.00 0.00 0.00 2.59
4125 5168 6.328641 TGTTGTAGTCTCTTCACTTACTCC 57.671 41.667 0.00 0.00 0.00 3.85
4126 5169 5.243283 TGTTGTAGTCTCTTCACTTACTCCC 59.757 44.000 0.00 0.00 0.00 4.30
4127 5170 5.258216 TGTAGTCTCTTCACTTACTCCCT 57.742 43.478 0.00 0.00 0.00 4.20
4128 5171 5.254901 TGTAGTCTCTTCACTTACTCCCTC 58.745 45.833 0.00 0.00 0.00 4.30
4129 5172 4.668138 AGTCTCTTCACTTACTCCCTCT 57.332 45.455 0.00 0.00 0.00 3.69
4130 5173 5.782677 AGTCTCTTCACTTACTCCCTCTA 57.217 43.478 0.00 0.00 0.00 2.43
4131 5174 6.142259 AGTCTCTTCACTTACTCCCTCTAA 57.858 41.667 0.00 0.00 0.00 2.10
4132 5175 6.553857 AGTCTCTTCACTTACTCCCTCTAAA 58.446 40.000 0.00 0.00 0.00 1.85
4133 5176 6.661805 AGTCTCTTCACTTACTCCCTCTAAAG 59.338 42.308 0.00 0.00 0.00 1.85
4134 5177 6.660094 GTCTCTTCACTTACTCCCTCTAAAGA 59.340 42.308 0.00 0.00 0.00 2.52
4135 5178 7.177041 GTCTCTTCACTTACTCCCTCTAAAGAA 59.823 40.741 0.00 0.00 0.00 2.52
4136 5179 7.728981 TCTCTTCACTTACTCCCTCTAAAGAAA 59.271 37.037 0.00 0.00 0.00 2.52
4137 5180 8.437274 TCTTCACTTACTCCCTCTAAAGAAAT 57.563 34.615 0.00 0.00 0.00 2.17
4138 5181 9.543231 TCTTCACTTACTCCCTCTAAAGAAATA 57.457 33.333 0.00 0.00 0.00 1.40
4146 5189 7.662897 ACTCCCTCTAAAGAAATATAAGAGCG 58.337 38.462 0.00 0.00 33.80 5.03
4147 5190 7.288158 ACTCCCTCTAAAGAAATATAAGAGCGT 59.712 37.037 0.00 0.00 33.80 5.07
4148 5191 8.019656 TCCCTCTAAAGAAATATAAGAGCGTT 57.980 34.615 0.00 0.00 33.80 4.84
4149 5192 9.139734 TCCCTCTAAAGAAATATAAGAGCGTTA 57.860 33.333 0.00 0.00 33.80 3.18
4150 5193 9.413048 CCCTCTAAAGAAATATAAGAGCGTTAG 57.587 37.037 0.00 0.00 33.80 2.34
4151 5194 9.413048 CCTCTAAAGAAATATAAGAGCGTTAGG 57.587 37.037 0.00 0.00 33.80 2.69
4152 5195 9.413048 CTCTAAAGAAATATAAGAGCGTTAGGG 57.587 37.037 0.00 0.00 0.00 3.53
4153 5196 6.862711 AAAGAAATATAAGAGCGTTAGGGC 57.137 37.500 0.00 0.00 0.00 5.19
4154 5197 4.557205 AGAAATATAAGAGCGTTAGGGCG 58.443 43.478 0.00 0.00 38.18 6.13
4155 5198 4.038883 AGAAATATAAGAGCGTTAGGGCGT 59.961 41.667 0.00 0.00 38.18 5.68
4156 5199 4.332428 AATATAAGAGCGTTAGGGCGTT 57.668 40.909 0.00 0.00 38.18 4.84
4157 5200 2.685850 ATAAGAGCGTTAGGGCGTTT 57.314 45.000 0.00 0.00 38.18 3.60
4158 5201 1.717194 TAAGAGCGTTAGGGCGTTTG 58.283 50.000 0.00 0.00 38.18 2.93
4159 5202 0.034337 AAGAGCGTTAGGGCGTTTGA 59.966 50.000 0.00 0.00 38.18 2.69
4160 5203 0.389948 AGAGCGTTAGGGCGTTTGAG 60.390 55.000 0.00 0.00 38.18 3.02
4161 5204 0.669625 GAGCGTTAGGGCGTTTGAGT 60.670 55.000 0.00 0.00 38.18 3.41
4162 5205 0.949105 AGCGTTAGGGCGTTTGAGTG 60.949 55.000 0.00 0.00 38.18 3.51
4163 5206 0.947180 GCGTTAGGGCGTTTGAGTGA 60.947 55.000 0.00 0.00 0.00 3.41
4164 5207 1.722011 CGTTAGGGCGTTTGAGTGAT 58.278 50.000 0.00 0.00 0.00 3.06
4165 5208 1.659098 CGTTAGGGCGTTTGAGTGATC 59.341 52.381 0.00 0.00 0.00 2.92
4166 5209 2.674177 CGTTAGGGCGTTTGAGTGATCT 60.674 50.000 0.00 0.00 0.00 2.75
4167 5210 3.428452 CGTTAGGGCGTTTGAGTGATCTA 60.428 47.826 0.00 0.00 0.00 1.98
4168 5211 4.501071 GTTAGGGCGTTTGAGTGATCTAA 58.499 43.478 0.00 0.00 0.00 2.10
4169 5212 3.695830 AGGGCGTTTGAGTGATCTAAA 57.304 42.857 0.00 0.00 0.00 1.85
4170 5213 3.335579 AGGGCGTTTGAGTGATCTAAAC 58.664 45.455 0.00 0.50 0.00 2.01
4174 5217 4.232641 CGTTTGAGTGATCTAAACGCTC 57.767 45.455 17.69 0.00 46.32 5.03
4175 5218 3.921021 CGTTTGAGTGATCTAAACGCTCT 59.079 43.478 17.69 0.00 46.32 4.09
4176 5219 4.386049 CGTTTGAGTGATCTAAACGCTCTT 59.614 41.667 17.69 0.00 46.32 2.85
4177 5220 5.571741 CGTTTGAGTGATCTAAACGCTCTTA 59.428 40.000 17.69 0.00 46.32 2.10
4178 5221 6.253727 CGTTTGAGTGATCTAAACGCTCTTAT 59.746 38.462 17.69 0.00 46.32 1.73
4179 5222 7.431376 CGTTTGAGTGATCTAAACGCTCTTATA 59.569 37.037 17.69 0.00 46.32 0.98
4180 5223 9.250624 GTTTGAGTGATCTAAACGCTCTTATAT 57.749 33.333 0.00 0.00 42.89 0.86
4181 5224 9.817809 TTTGAGTGATCTAAACGCTCTTATATT 57.182 29.630 0.00 0.00 42.89 1.28
4182 5225 9.817809 TTGAGTGATCTAAACGCTCTTATATTT 57.182 29.630 0.00 0.00 42.89 1.40
4183 5226 9.464714 TGAGTGATCTAAACGCTCTTATATTTC 57.535 33.333 0.00 0.00 42.89 2.17
4184 5227 9.685828 GAGTGATCTAAACGCTCTTATATTTCT 57.314 33.333 0.00 0.00 40.40 2.52
4195 5238 9.817809 ACGCTCTTATATTTCTTTACAATGAGA 57.182 29.630 0.00 0.00 0.00 3.27
4205 5248 8.677148 TTTCTTTACAATGAGAGTAGCAAAGT 57.323 30.769 0.00 0.00 0.00 2.66
4206 5249 7.658179 TCTTTACAATGAGAGTAGCAAAGTG 57.342 36.000 0.00 0.00 0.00 3.16
4207 5250 5.862924 TTACAATGAGAGTAGCAAAGTGC 57.137 39.130 0.00 0.00 45.46 4.40
4221 5264 5.051891 GCAAAGTGCAGATTACATGAAGT 57.948 39.130 0.00 0.00 44.26 3.01
4222 5265 6.182039 GCAAAGTGCAGATTACATGAAGTA 57.818 37.500 0.00 0.00 44.26 2.24
4223 5266 6.611381 GCAAAGTGCAGATTACATGAAGTAA 58.389 36.000 0.00 0.00 43.96 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.680735 GTGCAACAAAGTCATCACCCA 59.319 47.619 0.00 0.00 36.32 4.51
76 77 5.814188 TCTGGATCAAAATCAAGATCACGAG 59.186 40.000 0.00 0.00 37.10 4.18
78 79 6.426980 TTCTGGATCAAAATCAAGATCACG 57.573 37.500 0.00 0.00 40.86 4.35
237 269 2.049063 GAGCTCTTCACCGTGCGT 60.049 61.111 6.43 0.00 0.00 5.24
261 293 6.898521 ACTTAGCCTACTCCTTTTCTCAGTAT 59.101 38.462 0.00 0.00 0.00 2.12
266 298 6.038997 TGAACTTAGCCTACTCCTTTTCTC 57.961 41.667 0.00 0.00 0.00 2.87
296 328 0.737715 CTGCTACAACGGAGACAGCC 60.738 60.000 0.00 0.00 0.00 4.85
420 457 0.873743 GCAGGAGCAGCGAGTATGAC 60.874 60.000 0.00 0.00 41.58 3.06
509 550 1.375908 GGAGACAACGATGGCAGCA 60.376 57.895 2.73 0.00 36.86 4.41
532 573 3.576356 CATCGGTGGTGATGGCGC 61.576 66.667 0.00 0.00 41.63 6.53
537 578 1.152902 CCATGGCATCGGTGGTGAT 60.153 57.895 0.00 0.00 0.00 3.06
543 584 1.630126 AAGAGCTCCATGGCATCGGT 61.630 55.000 10.93 0.45 34.17 4.69
556 597 2.548920 CCGAGTTCAACCAGAAAGAGCT 60.549 50.000 0.00 0.00 38.13 4.09
557 598 1.801178 CCGAGTTCAACCAGAAAGAGC 59.199 52.381 0.00 0.00 38.13 4.09
586 651 1.014564 GGAACGGCAGAGACGAAAGG 61.015 60.000 0.00 0.00 35.20 3.11
613 678 0.391130 TGCACCATTGAGTCCGCTAC 60.391 55.000 0.00 0.00 0.00 3.58
620 685 2.575108 CAGGCATGCACCATTGAGT 58.425 52.632 21.36 0.00 0.00 3.41
707 772 4.838152 GCGATCTTGGCGAGGGCA 62.838 66.667 0.97 0.00 42.47 5.36
738 804 0.246086 CCTGCAGATCGATCTAGGGC 59.754 60.000 26.90 24.85 34.85 5.19
739 805 1.626686 ACCTGCAGATCGATCTAGGG 58.373 55.000 33.05 29.27 37.10 3.53
746 812 4.471904 AGTTAATCAACCTGCAGATCGA 57.528 40.909 17.39 8.37 35.05 3.59
752 818 3.134574 ACGGAAGTTAATCAACCTGCA 57.865 42.857 0.00 0.00 46.40 4.41
783 853 3.071167 GGCGTGGATAAATTAGGAGGTCT 59.929 47.826 0.00 0.00 0.00 3.85
810 885 2.350458 CCCGGCCCAGGTTTGATTG 61.350 63.158 0.00 0.00 0.00 2.67
811 886 2.037208 CCCGGCCCAGGTTTGATT 59.963 61.111 0.00 0.00 0.00 2.57
851 926 4.787280 CCCCTCCTCGACTGGGCT 62.787 72.222 7.02 0.00 39.61 5.19
861 936 1.081277 GTTCCTGTCTCCCCCTCCT 59.919 63.158 0.00 0.00 0.00 3.69
862 937 1.996187 GGTTCCTGTCTCCCCCTCC 60.996 68.421 0.00 0.00 0.00 4.30
863 938 1.081277 AGGTTCCTGTCTCCCCCTC 59.919 63.158 0.00 0.00 0.00 4.30
867 942 1.554583 GGTCCAGGTTCCTGTCTCCC 61.555 65.000 16.33 7.56 32.56 4.30
943 1021 3.135994 TCGCTGTACCCTCTTGTTTTTC 58.864 45.455 0.00 0.00 0.00 2.29
1126 1212 1.620739 GCACAGAGATGGCAGAGGGA 61.621 60.000 0.00 0.00 0.00 4.20
1381 1514 7.488322 TGTAAGAACAAAAATCCAAACTGGAG 58.512 34.615 1.31 0.00 40.67 3.86
1417 1550 2.991190 CTGTTCAAATGCAATGTCCTGC 59.009 45.455 0.00 0.00 42.95 4.85
1490 2395 9.289782 GAGGCTGAAATATTGACATAAATAGGT 57.710 33.333 0.00 0.00 0.00 3.08
1542 2447 8.749026 ATAATGAGATTAGGATGATTGATGCC 57.251 34.615 0.00 0.00 0.00 4.40
1765 2682 6.573434 ACTTTCCACTTCAACCAAAATCTTC 58.427 36.000 0.00 0.00 0.00 2.87
2062 2999 5.067674 TGCCTGCTGGTTTATTCATATTCAC 59.932 40.000 11.69 0.00 35.27 3.18
2098 3035 2.151736 CGTCGCAACTGCAGAAAATTTG 59.848 45.455 23.35 14.95 42.21 2.32
2101 3038 1.195448 CTCGTCGCAACTGCAGAAAAT 59.805 47.619 23.35 0.00 42.21 1.82
2115 3052 1.298157 TGAATTGGGCTTGCTCGTCG 61.298 55.000 0.00 0.00 0.00 5.12
2221 3222 2.352960 GCTTTGCAAGGAAGGACTATCG 59.647 50.000 13.48 0.00 0.00 2.92
2242 3243 7.549615 TTCAGAGATCATCATGCTTAAACAG 57.450 36.000 0.00 0.00 0.00 3.16
2243 3244 7.926674 TTTCAGAGATCATCATGCTTAAACA 57.073 32.000 0.00 0.00 0.00 2.83
2244 3245 7.797587 CGATTTCAGAGATCATCATGCTTAAAC 59.202 37.037 0.00 0.00 0.00 2.01
2270 3272 3.067180 CACACTGGGATTGGATGCATAAC 59.933 47.826 0.00 0.00 0.00 1.89
2278 3282 1.632920 TGTATGCACACTGGGATTGGA 59.367 47.619 0.00 0.00 0.00 3.53
2280 3284 3.281158 TGATGTATGCACACTGGGATTG 58.719 45.455 0.00 0.00 37.54 2.67
2313 3317 8.969260 TGAGTATGAGAATAAGTTGCATCATT 57.031 30.769 0.88 0.00 0.00 2.57
2320 3324 6.988580 TCATGGCTGAGTATGAGAATAAGTTG 59.011 38.462 0.00 0.00 0.00 3.16
2410 3414 9.052759 CAGTTGTAACCAAAAGTGTATCTTACT 57.947 33.333 0.00 0.00 35.02 2.24
2420 3424 8.085909 GGTTAATATGCAGTTGTAACCAAAAGT 58.914 33.333 19.07 0.00 42.13 2.66
2430 3434 6.437162 ACAGGAAATGGTTAATATGCAGTTGT 59.563 34.615 0.00 0.00 0.00 3.32
2536 3540 0.169672 CAGAAGGCATTGCTGGAACG 59.830 55.000 8.82 0.00 0.00 3.95
2569 3573 2.816958 ACGATGGCTGCTTCTGCG 60.817 61.111 0.00 0.00 43.34 5.18
2578 3582 4.503296 GGACCATAATAGTTCACGATGGCT 60.503 45.833 0.00 0.00 40.68 4.75
2611 3615 8.786826 ATCTACGAGGTTATTCATGTTTGAAA 57.213 30.769 0.00 0.00 44.70 2.69
2616 3620 9.909644 GTGTATATCTACGAGGTTATTCATGTT 57.090 33.333 0.00 0.00 0.00 2.71
2617 3621 8.521176 GGTGTATATCTACGAGGTTATTCATGT 58.479 37.037 0.00 0.00 0.00 3.21
2618 3622 8.520351 TGGTGTATATCTACGAGGTTATTCATG 58.480 37.037 0.00 0.00 0.00 3.07
2619 3623 8.645814 TGGTGTATATCTACGAGGTTATTCAT 57.354 34.615 0.00 0.00 0.00 2.57
2630 3643 4.251543 TGTGCCATGGTGTATATCTACG 57.748 45.455 14.67 0.00 0.00 3.51
2669 3697 2.697751 CAGTATGGACAGAGAGGGAAGG 59.302 54.545 0.00 0.00 0.00 3.46
2673 3701 3.515502 TGTTTCAGTATGGACAGAGAGGG 59.484 47.826 0.00 0.00 36.16 4.30
3374 4416 2.881111 AGGCCTACCCTTTGAAAGAC 57.119 50.000 1.29 0.00 43.06 3.01
3403 4445 6.881602 GGGTACAAAATTATCAAAAATGCCCA 59.118 34.615 0.00 0.00 0.00 5.36
3422 4464 1.765074 GGGTCTTGCCAAGGGTACA 59.235 57.895 4.30 0.00 39.65 2.90
3430 4472 1.202099 TGATAACCGGGGTCTTGCCA 61.202 55.000 6.32 0.00 39.65 4.92
3431 4473 0.182775 ATGATAACCGGGGTCTTGCC 59.817 55.000 6.32 0.00 0.00 4.52
3473 4515 2.036475 ACAGTCTATCGCATTAGCCAGG 59.964 50.000 0.00 0.00 37.52 4.45
3475 4517 4.929819 TTACAGTCTATCGCATTAGCCA 57.070 40.909 0.00 0.00 37.52 4.75
3476 4518 5.522460 TGTTTTACAGTCTATCGCATTAGCC 59.478 40.000 0.00 0.00 37.52 3.93
3487 4529 9.211485 GTAAGCCATTAAGTGTTTTACAGTCTA 57.789 33.333 0.00 0.00 28.76 2.59
3491 4533 6.801862 GCAGTAAGCCATTAAGTGTTTTACAG 59.198 38.462 0.00 0.00 37.23 2.74
3520 4562 5.294306 TCAAGATGAACAACTTCTCACACAC 59.706 40.000 0.00 0.00 32.90 3.82
3570 4612 8.183104 ACGAATCAACATATAGAGATCTTGGA 57.817 34.615 0.00 0.00 0.00 3.53
3584 4626 6.329496 ACACTTTTGTTCAACGAATCAACAT 58.671 32.000 0.00 0.00 28.43 2.71
3617 4659 2.857186 TAGCTTGTCCATCTGCACAA 57.143 45.000 0.00 0.00 0.00 3.33
3717 4759 5.645624 TGAATTGTGCCCAAACATAATACG 58.354 37.500 0.00 0.00 31.93 3.06
3722 4764 6.106648 TGATTTGAATTGTGCCCAAACATA 57.893 33.333 0.00 0.00 33.33 2.29
3789 4832 5.700402 ATGGTAAGACTAAGAGCCAACAT 57.300 39.130 0.00 0.00 0.00 2.71
3815 4858 6.206243 AGACAGACTGAAAATTGACAGAATGG 59.794 38.462 10.08 7.33 43.62 3.16
3836 4879 0.606401 GGCAGGCAGTTAAGCAGACA 60.606 55.000 0.00 0.00 35.83 3.41
3841 4884 1.613437 TGAAAAGGCAGGCAGTTAAGC 59.387 47.619 0.00 0.00 0.00 3.09
3853 4896 4.498241 GATCAACAAAGGGATGAAAAGGC 58.502 43.478 0.00 0.00 0.00 4.35
3861 4904 4.580580 GCCTTTATCGATCAACAAAGGGAT 59.419 41.667 27.17 6.08 44.72 3.85
3871 4914 5.185454 ACAATGAGTTGCCTTTATCGATCA 58.815 37.500 0.00 0.00 38.96 2.92
3915 4958 9.423061 ACATCCAGTTTAAGCAAATACAATTTC 57.577 29.630 0.00 0.00 0.00 2.17
3964 5007 3.871006 TGACACATCTTGACAAGTGTGAC 59.129 43.478 33.43 29.76 44.48 3.67
3972 5015 3.076621 GCCTTGATGACACATCTTGACA 58.923 45.455 11.98 0.00 34.27 3.58
3975 5018 6.127814 ACAATTAGCCTTGATGACACATCTTG 60.128 38.462 11.98 8.24 0.00 3.02
3983 5026 8.438676 AAGTACATACAATTAGCCTTGATGAC 57.561 34.615 0.00 0.00 0.00 3.06
3999 5042 8.732746 ATATTCACTTCACCCAAAGTACATAC 57.267 34.615 0.00 0.00 37.38 2.39
4006 5049 8.450578 TTGCTATATATTCACTTCACCCAAAG 57.549 34.615 0.00 0.00 0.00 2.77
4009 5052 7.217200 GTCTTGCTATATATTCACTTCACCCA 58.783 38.462 0.00 0.00 0.00 4.51
4034 5077 1.129251 CTAGAAATGGTGTGTGCAGCG 59.871 52.381 0.00 0.00 45.36 5.18
4039 5082 4.074970 AGAAAGGCTAGAAATGGTGTGTG 58.925 43.478 0.00 0.00 0.00 3.82
4040 5083 4.074970 CAGAAAGGCTAGAAATGGTGTGT 58.925 43.478 0.00 0.00 0.00 3.72
4041 5084 3.441572 CCAGAAAGGCTAGAAATGGTGTG 59.558 47.826 0.00 0.00 0.00 3.82
4090 5133 5.241949 AGAGACTACAACAGGTGTTCTACAG 59.758 44.000 0.00 0.00 41.98 2.74
4091 5134 5.138276 AGAGACTACAACAGGTGTTCTACA 58.862 41.667 0.00 0.00 41.98 2.74
4092 5135 5.708877 AGAGACTACAACAGGTGTTCTAC 57.291 43.478 0.00 0.00 41.98 2.59
4093 5136 5.831525 TGAAGAGACTACAACAGGTGTTCTA 59.168 40.000 0.00 0.00 41.98 2.10
4095 5138 4.745620 GTGAAGAGACTACAACAGGTGTTC 59.254 45.833 0.00 0.00 41.98 3.18
4096 5139 4.406003 AGTGAAGAGACTACAACAGGTGTT 59.594 41.667 0.00 0.00 41.98 3.32
4097 5140 3.961408 AGTGAAGAGACTACAACAGGTGT 59.039 43.478 0.00 0.00 44.82 4.16
4098 5141 4.592485 AGTGAAGAGACTACAACAGGTG 57.408 45.455 0.00 0.00 0.00 4.00
4099 5142 5.834204 AGTAAGTGAAGAGACTACAACAGGT 59.166 40.000 0.00 0.00 0.00 4.00
4100 5143 6.334102 AGTAAGTGAAGAGACTACAACAGG 57.666 41.667 0.00 0.00 0.00 4.00
4101 5144 6.383415 GGAGTAAGTGAAGAGACTACAACAG 58.617 44.000 0.00 0.00 0.00 3.16
4102 5145 5.243283 GGGAGTAAGTGAAGAGACTACAACA 59.757 44.000 0.00 0.00 0.00 3.33
4103 5146 5.477637 AGGGAGTAAGTGAAGAGACTACAAC 59.522 44.000 0.00 0.00 0.00 3.32
4104 5147 5.642165 AGGGAGTAAGTGAAGAGACTACAA 58.358 41.667 0.00 0.00 0.00 2.41
4122 5165 7.662897 ACGCTCTTATATTTCTTTAGAGGGAG 58.337 38.462 17.66 0.00 44.18 4.30
4123 5166 7.598759 ACGCTCTTATATTTCTTTAGAGGGA 57.401 36.000 17.66 0.00 44.18 4.20
4124 5167 9.413048 CTAACGCTCTTATATTTCTTTAGAGGG 57.587 37.037 11.43 11.43 45.78 4.30
4125 5168 9.413048 CCTAACGCTCTTATATTTCTTTAGAGG 57.587 37.037 0.00 0.00 34.36 3.69
4126 5169 9.413048 CCCTAACGCTCTTATATTTCTTTAGAG 57.587 37.037 0.00 0.00 36.33 2.43
4127 5170 7.871463 GCCCTAACGCTCTTATATTTCTTTAGA 59.129 37.037 0.00 0.00 0.00 2.10
4128 5171 7.148787 CGCCCTAACGCTCTTATATTTCTTTAG 60.149 40.741 0.00 0.00 0.00 1.85
4129 5172 6.643770 CGCCCTAACGCTCTTATATTTCTTTA 59.356 38.462 0.00 0.00 0.00 1.85
4130 5173 5.465724 CGCCCTAACGCTCTTATATTTCTTT 59.534 40.000 0.00 0.00 0.00 2.52
4131 5174 4.989168 CGCCCTAACGCTCTTATATTTCTT 59.011 41.667 0.00 0.00 0.00 2.52
4132 5175 4.038883 ACGCCCTAACGCTCTTATATTTCT 59.961 41.667 0.00 0.00 36.19 2.52
4133 5176 4.304939 ACGCCCTAACGCTCTTATATTTC 58.695 43.478 0.00 0.00 36.19 2.17
4134 5177 4.332428 ACGCCCTAACGCTCTTATATTT 57.668 40.909 0.00 0.00 36.19 1.40
4135 5178 4.332428 AACGCCCTAACGCTCTTATATT 57.668 40.909 0.00 0.00 36.19 1.28
4136 5179 4.056050 CAAACGCCCTAACGCTCTTATAT 58.944 43.478 0.00 0.00 36.19 0.86
4137 5180 3.130869 TCAAACGCCCTAACGCTCTTATA 59.869 43.478 0.00 0.00 36.19 0.98
4138 5181 2.093869 TCAAACGCCCTAACGCTCTTAT 60.094 45.455 0.00 0.00 36.19 1.73
4139 5182 1.273048 TCAAACGCCCTAACGCTCTTA 59.727 47.619 0.00 0.00 36.19 2.10
4140 5183 0.034337 TCAAACGCCCTAACGCTCTT 59.966 50.000 0.00 0.00 36.19 2.85
4141 5184 0.389948 CTCAAACGCCCTAACGCTCT 60.390 55.000 0.00 0.00 36.19 4.09
4142 5185 0.669625 ACTCAAACGCCCTAACGCTC 60.670 55.000 0.00 0.00 36.19 5.03
4143 5186 0.949105 CACTCAAACGCCCTAACGCT 60.949 55.000 0.00 0.00 36.19 5.07
4144 5187 0.947180 TCACTCAAACGCCCTAACGC 60.947 55.000 0.00 0.00 36.19 4.84
4145 5188 1.659098 GATCACTCAAACGCCCTAACG 59.341 52.381 0.00 0.00 39.50 3.18
4146 5189 2.973945 AGATCACTCAAACGCCCTAAC 58.026 47.619 0.00 0.00 0.00 2.34
4147 5190 4.811969 TTAGATCACTCAAACGCCCTAA 57.188 40.909 0.00 0.00 0.00 2.69
4148 5191 4.501071 GTTTAGATCACTCAAACGCCCTA 58.499 43.478 0.00 0.00 0.00 3.53
4149 5192 3.335579 GTTTAGATCACTCAAACGCCCT 58.664 45.455 0.00 0.00 0.00 5.19
4150 5193 2.093783 CGTTTAGATCACTCAAACGCCC 59.906 50.000 16.29 0.00 45.21 6.13
4151 5194 3.369835 CGTTTAGATCACTCAAACGCC 57.630 47.619 16.29 0.00 45.21 5.68
4154 5197 5.847670 AAGAGCGTTTAGATCACTCAAAC 57.152 39.130 0.00 0.00 37.82 2.93
4155 5198 9.817809 AATATAAGAGCGTTTAGATCACTCAAA 57.182 29.630 0.00 0.00 37.82 2.69
4156 5199 9.817809 AAATATAAGAGCGTTTAGATCACTCAA 57.182 29.630 0.00 0.00 37.82 3.02
4157 5200 9.464714 GAAATATAAGAGCGTTTAGATCACTCA 57.535 33.333 0.00 0.00 37.82 3.41
4158 5201 9.685828 AGAAATATAAGAGCGTTTAGATCACTC 57.314 33.333 0.00 0.00 37.82 3.51
4169 5212 9.817809 TCTCATTGTAAAGAAATATAAGAGCGT 57.182 29.630 0.00 0.00 0.00 5.07
4179 5222 9.289782 ACTTTGCTACTCTCATTGTAAAGAAAT 57.710 29.630 8.80 0.00 36.26 2.17
4180 5223 8.559536 CACTTTGCTACTCTCATTGTAAAGAAA 58.440 33.333 8.80 0.00 36.26 2.52
4181 5224 7.307989 GCACTTTGCTACTCTCATTGTAAAGAA 60.308 37.037 8.80 0.00 40.96 2.52
4182 5225 6.147821 GCACTTTGCTACTCTCATTGTAAAGA 59.852 38.462 8.80 0.00 40.96 2.52
4183 5226 6.073058 TGCACTTTGCTACTCTCATTGTAAAG 60.073 38.462 0.00 0.00 45.31 1.85
4184 5227 5.762711 TGCACTTTGCTACTCTCATTGTAAA 59.237 36.000 0.00 0.00 45.31 2.01
4185 5228 5.304778 TGCACTTTGCTACTCTCATTGTAA 58.695 37.500 0.00 0.00 45.31 2.41
4186 5229 4.893608 TGCACTTTGCTACTCTCATTGTA 58.106 39.130 0.00 0.00 45.31 2.41
4187 5230 3.743521 TGCACTTTGCTACTCTCATTGT 58.256 40.909 0.00 0.00 45.31 2.71
4188 5231 3.999001 TCTGCACTTTGCTACTCTCATTG 59.001 43.478 0.00 0.00 45.31 2.82
4189 5232 4.277515 TCTGCACTTTGCTACTCTCATT 57.722 40.909 0.00 0.00 45.31 2.57
4190 5233 3.969287 TCTGCACTTTGCTACTCTCAT 57.031 42.857 0.00 0.00 45.31 2.90
4191 5234 3.969287 ATCTGCACTTTGCTACTCTCA 57.031 42.857 0.00 0.00 45.31 3.27
4192 5235 5.171476 TGTAATCTGCACTTTGCTACTCTC 58.829 41.667 0.00 0.00 45.31 3.20
4193 5236 5.152623 TGTAATCTGCACTTTGCTACTCT 57.847 39.130 0.00 0.00 45.31 3.24
4194 5237 5.582269 TCATGTAATCTGCACTTTGCTACTC 59.418 40.000 0.00 0.00 45.31 2.59
4195 5238 5.491070 TCATGTAATCTGCACTTTGCTACT 58.509 37.500 0.00 0.00 45.31 2.57
4196 5239 5.801350 TCATGTAATCTGCACTTTGCTAC 57.199 39.130 0.00 0.00 45.31 3.58
4197 5240 5.939883 ACTTCATGTAATCTGCACTTTGCTA 59.060 36.000 0.00 0.00 45.31 3.49
4198 5241 4.763793 ACTTCATGTAATCTGCACTTTGCT 59.236 37.500 0.00 0.00 45.31 3.91
4199 5242 5.051891 ACTTCATGTAATCTGCACTTTGC 57.948 39.130 0.00 0.00 45.29 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.