Multiple sequence alignment - TraesCS3D01G013100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G013100 chr3D 100.000 3176 0 0 1 3176 4503881 4507056 0.000000e+00 5866
1 TraesCS3D01G013100 chr3D 71.686 611 126 32 1595 2176 28224188 28223596 3.330000e-25 126
2 TraesCS3D01G013100 chr3A 92.193 2690 154 19 263 2930 10360240 10362895 0.000000e+00 3753
3 TraesCS3D01G013100 chr3A 78.937 527 92 12 1050 1562 10750071 10750592 1.090000e-89 340
4 TraesCS3D01G013100 chr3A 78.748 527 93 12 1050 1562 10720031 10720552 5.080000e-88 335
5 TraesCS3D01G013100 chr3A 92.188 192 11 3 2923 3110 10363152 10363343 5.220000e-68 268
6 TraesCS3D01G013100 chr3A 77.560 459 84 12 1050 1494 10775114 10775567 3.140000e-65 259
7 TraesCS3D01G013100 chr3A 71.799 695 154 32 1479 2151 38013069 38012395 3.280000e-35 159
8 TraesCS3D01G013100 chrUn 88.987 454 28 6 867 1304 303838905 303839352 2.790000e-150 542
9 TraesCS3D01G013100 chrUn 88.987 454 28 6 867 1304 311149435 311149882 2.790000e-150 542
10 TraesCS3D01G013100 chrUn 89.320 206 21 1 1407 1612 36065276 36065072 1.130000e-64 257
11 TraesCS3D01G013100 chrUn 93.671 158 9 1 680 836 303838748 303838905 5.300000e-58 235
12 TraesCS3D01G013100 chrUn 93.671 158 9 1 680 836 311149278 311149435 5.300000e-58 235
13 TraesCS3D01G013100 chrUn 91.566 83 7 0 1334 1416 303839349 303839431 7.200000e-22 115
14 TraesCS3D01G013100 chrUn 91.566 83 7 0 1334 1416 311149879 311149961 7.200000e-22 115
15 TraesCS3D01G013100 chr1A 76.906 446 59 16 2573 2977 25574180 25573738 2.480000e-51 213
16 TraesCS3D01G013100 chr1A 71.569 714 170 27 1477 2175 481628537 481629232 2.530000e-36 163
17 TraesCS3D01G013100 chr1A 87.069 116 15 0 3060 3175 580955826 580955941 7.150000e-27 132
18 TraesCS3D01G013100 chr3B 72.206 698 152 31 1476 2151 46328605 46329282 3.260000e-40 176
19 TraesCS3D01G013100 chr3B 72.749 422 95 12 1675 2083 46305473 46305887 1.200000e-24 124
20 TraesCS3D01G013100 chr1B 71.862 725 166 32 1477 2176 510791302 510792013 1.170000e-39 174
21 TraesCS3D01G013100 chr1D 70.457 1161 260 62 1058 2176 381005049 381006168 1.960000e-37 167
22 TraesCS3D01G013100 chr1D 87.069 116 15 0 3060 3175 483951374 483951489 7.150000e-27 132
23 TraesCS3D01G013100 chr1D 69.932 888 219 40 1070 1932 456280411 456279547 2.000000e-22 117
24 TraesCS3D01G013100 chr4D 88.034 117 14 0 3059 3175 408572511 408572627 4.270000e-29 139
25 TraesCS3D01G013100 chr5B 87.179 117 14 1 3061 3176 554821030 554821146 7.150000e-27 132
26 TraesCS3D01G013100 chr5B 86.325 117 16 0 3060 3176 607838553 607838437 9.250000e-26 128
27 TraesCS3D01G013100 chr7B 85.833 120 17 0 3056 3175 707709551 707709670 9.250000e-26 128
28 TraesCS3D01G013100 chr7A 86.842 114 15 0 3060 3173 624927581 624927694 9.250000e-26 128
29 TraesCS3D01G013100 chr5D 86.842 114 15 0 3060 3173 198955069 198954956 9.250000e-26 128
30 TraesCS3D01G013100 chr4B 85.714 119 17 0 3057 3175 574675707 574675825 3.330000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G013100 chr3D 4503881 4507056 3175 False 5866.000000 5866 100.0000 1 3176 1 chr3D.!!$F1 3175
1 TraesCS3D01G013100 chr3A 10360240 10363343 3103 False 2010.500000 3753 92.1905 263 3110 2 chr3A.!!$F4 2847
2 TraesCS3D01G013100 chr3A 10750071 10750592 521 False 340.000000 340 78.9370 1050 1562 1 chr3A.!!$F2 512
3 TraesCS3D01G013100 chr3A 10720031 10720552 521 False 335.000000 335 78.7480 1050 1562 1 chr3A.!!$F1 512
4 TraesCS3D01G013100 chrUn 303838748 303839431 683 False 297.333333 542 91.4080 680 1416 3 chrUn.!!$F1 736
5 TraesCS3D01G013100 chrUn 311149278 311149961 683 False 297.333333 542 91.4080 680 1416 3 chrUn.!!$F2 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.104855 TCAACTGTGAGCGCTCTGTT 59.895 50.0 35.27 29.85 32.32 3.16 F
220 221 0.234106 CAACTGTGAGCGCTCTGTTG 59.766 55.0 33.49 33.49 39.39 3.33 F
289 290 0.605589 AAAAGGAGAAGGAACGGGCG 60.606 55.0 0.00 0.00 0.00 6.13 F
1589 1631 0.382873 TACGATGATGGACGAACCCG 59.617 55.0 0.00 0.00 42.50 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1351 0.036732 TTCACAAGCTTGGCGATCCT 59.963 50.0 29.18 4.47 0.0 3.24 R
1330 1360 0.106519 AGCACAGGGTTCACAAGCTT 60.107 50.0 0.00 0.00 0.0 3.74 R
1658 1700 0.482446 AGACCAACCAGCATCCCAAA 59.518 50.0 0.00 0.00 0.0 3.28 R
2851 2900 0.040646 ATGGTGTCCGGGTGTAGAGA 59.959 55.0 0.00 0.00 0.0 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.866496 CGTCAAACAAAGCAAGAGAGAC 58.134 45.455 0.00 0.00 0.00 3.36
22 23 3.303395 CGTCAAACAAAGCAAGAGAGACC 60.303 47.826 0.00 0.00 0.00 3.85
23 24 3.627577 GTCAAACAAAGCAAGAGAGACCA 59.372 43.478 0.00 0.00 0.00 4.02
24 25 3.627577 TCAAACAAAGCAAGAGAGACCAC 59.372 43.478 0.00 0.00 0.00 4.16
25 26 3.567478 AACAAAGCAAGAGAGACCACT 57.433 42.857 0.00 0.00 0.00 4.00
26 27 2.843701 ACAAAGCAAGAGAGACCACTG 58.156 47.619 0.00 0.00 0.00 3.66
27 28 2.171448 ACAAAGCAAGAGAGACCACTGT 59.829 45.455 0.00 0.00 0.00 3.55
28 29 3.209410 CAAAGCAAGAGAGACCACTGTT 58.791 45.455 0.00 0.00 0.00 3.16
29 30 2.540265 AGCAAGAGAGACCACTGTTG 57.460 50.000 0.00 0.00 41.82 3.33
45 46 6.633500 CACTGTTGGAATAAACTCTTGGAA 57.367 37.500 0.00 0.00 0.00 3.53
46 47 7.038154 CACTGTTGGAATAAACTCTTGGAAA 57.962 36.000 0.00 0.00 0.00 3.13
47 48 7.661040 CACTGTTGGAATAAACTCTTGGAAAT 58.339 34.615 0.00 0.00 0.00 2.17
48 49 7.809806 CACTGTTGGAATAAACTCTTGGAAATC 59.190 37.037 0.00 0.00 0.00 2.17
49 50 7.505585 ACTGTTGGAATAAACTCTTGGAAATCA 59.494 33.333 0.00 0.00 0.00 2.57
50 51 8.421249 TGTTGGAATAAACTCTTGGAAATCAT 57.579 30.769 0.00 0.00 0.00 2.45
51 52 8.522830 TGTTGGAATAAACTCTTGGAAATCATC 58.477 33.333 0.00 0.00 0.00 2.92
52 53 8.522830 GTTGGAATAAACTCTTGGAAATCATCA 58.477 33.333 0.00 0.00 0.00 3.07
53 54 8.284945 TGGAATAAACTCTTGGAAATCATCAG 57.715 34.615 0.00 0.00 0.00 2.90
54 55 7.340232 TGGAATAAACTCTTGGAAATCATCAGG 59.660 37.037 0.00 0.00 0.00 3.86
55 56 6.705863 ATAAACTCTTGGAAATCATCAGGC 57.294 37.500 0.00 0.00 0.00 4.85
56 57 3.010200 ACTCTTGGAAATCATCAGGCC 57.990 47.619 0.00 0.00 0.00 5.19
57 58 2.305009 CTCTTGGAAATCATCAGGCCC 58.695 52.381 0.00 0.00 0.00 5.80
58 59 1.027357 CTTGGAAATCATCAGGCCCG 58.973 55.000 0.00 0.00 0.00 6.13
59 60 1.037030 TTGGAAATCATCAGGCCCGC 61.037 55.000 0.00 0.00 0.00 6.13
60 61 2.196245 GGAAATCATCAGGCCCGCC 61.196 63.158 0.00 0.00 0.00 6.13
61 62 2.516930 AAATCATCAGGCCCGCCG 60.517 61.111 0.00 0.00 41.95 6.46
62 63 3.344137 AAATCATCAGGCCCGCCGT 62.344 57.895 0.00 0.00 41.95 5.68
63 64 4.552365 ATCATCAGGCCCGCCGTG 62.552 66.667 0.00 1.56 41.95 4.94
84 85 2.479198 GCCAAACGCTCGGCTTAC 59.521 61.111 2.51 0.00 45.29 2.34
85 86 2.776072 CCAAACGCTCGGCTTACG 59.224 61.111 0.00 0.00 46.11 3.18
102 103 2.436824 GAAGGGTTCGGCAGGAGC 60.437 66.667 0.00 0.00 41.10 4.70
103 104 3.249189 AAGGGTTCGGCAGGAGCA 61.249 61.111 0.00 0.00 44.61 4.26
104 105 3.259633 AAGGGTTCGGCAGGAGCAG 62.260 63.158 0.00 0.00 44.61 4.24
106 107 4.400961 GGTTCGGCAGGAGCAGCT 62.401 66.667 0.00 0.00 44.61 4.24
107 108 2.359230 GTTCGGCAGGAGCAGCTT 60.359 61.111 0.00 0.00 44.61 3.74
108 109 2.046892 TTCGGCAGGAGCAGCTTC 60.047 61.111 0.00 0.00 44.61 3.86
109 110 3.612247 TTCGGCAGGAGCAGCTTCC 62.612 63.158 0.00 0.00 44.61 3.46
111 112 2.354343 GGCAGGAGCAGCTTCCTT 59.646 61.111 4.07 0.00 45.35 3.36
112 113 1.748500 GGCAGGAGCAGCTTCCTTC 60.749 63.158 4.07 0.00 45.35 3.46
113 114 1.002868 GCAGGAGCAGCTTCCTTCA 60.003 57.895 4.07 0.00 45.35 3.02
114 115 0.607489 GCAGGAGCAGCTTCCTTCAA 60.607 55.000 4.07 0.00 45.35 2.69
115 116 1.901591 CAGGAGCAGCTTCCTTCAAA 58.098 50.000 4.07 0.00 45.35 2.69
116 117 2.444421 CAGGAGCAGCTTCCTTCAAAT 58.556 47.619 4.07 0.00 45.35 2.32
117 118 2.422832 CAGGAGCAGCTTCCTTCAAATC 59.577 50.000 4.07 0.00 45.35 2.17
118 119 2.308275 AGGAGCAGCTTCCTTCAAATCT 59.692 45.455 0.72 0.00 45.35 2.40
119 120 2.422832 GGAGCAGCTTCCTTCAAATCTG 59.577 50.000 0.00 0.00 34.27 2.90
120 121 3.341823 GAGCAGCTTCCTTCAAATCTGA 58.658 45.455 0.00 0.00 0.00 3.27
121 122 3.345414 AGCAGCTTCCTTCAAATCTGAG 58.655 45.455 0.00 0.00 31.69 3.35
122 123 3.008813 AGCAGCTTCCTTCAAATCTGAGA 59.991 43.478 0.00 0.00 31.69 3.27
123 124 3.374678 GCAGCTTCCTTCAAATCTGAGAG 59.625 47.826 0.00 0.00 31.69 3.20
124 125 3.940221 CAGCTTCCTTCAAATCTGAGAGG 59.060 47.826 0.00 0.00 34.06 3.69
125 126 2.682352 GCTTCCTTCAAATCTGAGAGGC 59.318 50.000 0.00 0.00 33.39 4.70
126 127 3.277715 CTTCCTTCAAATCTGAGAGGCC 58.722 50.000 0.00 0.00 33.39 5.19
127 128 2.269023 TCCTTCAAATCTGAGAGGCCA 58.731 47.619 5.01 0.00 33.39 5.36
128 129 2.644299 TCCTTCAAATCTGAGAGGCCAA 59.356 45.455 5.01 0.00 33.39 4.52
129 130 3.074390 TCCTTCAAATCTGAGAGGCCAAA 59.926 43.478 5.01 0.00 33.39 3.28
130 131 3.192212 CCTTCAAATCTGAGAGGCCAAAC 59.808 47.826 5.01 0.00 31.69 2.93
131 132 3.795688 TCAAATCTGAGAGGCCAAACT 57.204 42.857 5.01 0.14 0.00 2.66
132 133 3.415212 TCAAATCTGAGAGGCCAAACTG 58.585 45.455 5.01 0.00 0.00 3.16
133 134 3.152341 CAAATCTGAGAGGCCAAACTGT 58.848 45.455 5.01 0.00 0.00 3.55
134 135 3.515602 AATCTGAGAGGCCAAACTGTT 57.484 42.857 5.01 0.00 0.00 3.16
135 136 2.260844 TCTGAGAGGCCAAACTGTTG 57.739 50.000 5.01 0.00 34.25 3.33
136 137 1.490490 TCTGAGAGGCCAAACTGTTGT 59.510 47.619 5.01 0.00 32.40 3.32
137 138 2.092429 TCTGAGAGGCCAAACTGTTGTT 60.092 45.455 5.01 0.00 38.16 2.83
138 139 2.291741 CTGAGAGGCCAAACTGTTGTTC 59.708 50.000 5.01 0.00 34.96 3.18
139 140 2.297701 GAGAGGCCAAACTGTTGTTCA 58.702 47.619 5.01 0.00 34.96 3.18
140 141 2.687935 GAGAGGCCAAACTGTTGTTCAA 59.312 45.455 5.01 0.00 34.96 2.69
141 142 3.096092 AGAGGCCAAACTGTTGTTCAAA 58.904 40.909 5.01 0.00 34.96 2.69
142 143 3.706086 AGAGGCCAAACTGTTGTTCAAAT 59.294 39.130 5.01 0.00 34.96 2.32
143 144 4.162131 AGAGGCCAAACTGTTGTTCAAATT 59.838 37.500 5.01 0.00 34.96 1.82
144 145 4.441792 AGGCCAAACTGTTGTTCAAATTC 58.558 39.130 5.01 0.00 34.96 2.17
145 146 4.162131 AGGCCAAACTGTTGTTCAAATTCT 59.838 37.500 5.01 0.00 34.96 2.40
146 147 4.875536 GGCCAAACTGTTGTTCAAATTCTT 59.124 37.500 0.00 0.00 34.96 2.52
147 148 5.006649 GGCCAAACTGTTGTTCAAATTCTTC 59.993 40.000 0.00 0.00 34.96 2.87
148 149 5.812127 GCCAAACTGTTGTTCAAATTCTTCT 59.188 36.000 0.00 0.00 34.96 2.85
149 150 6.237915 GCCAAACTGTTGTTCAAATTCTTCTG 60.238 38.462 0.00 0.00 34.96 3.02
150 151 7.035004 CCAAACTGTTGTTCAAATTCTTCTGA 58.965 34.615 0.00 0.00 34.96 3.27
151 152 7.009540 CCAAACTGTTGTTCAAATTCTTCTGAC 59.990 37.037 0.00 0.00 34.96 3.51
152 153 7.396540 AACTGTTGTTCAAATTCTTCTGACT 57.603 32.000 0.00 0.00 0.00 3.41
153 154 7.396540 ACTGTTGTTCAAATTCTTCTGACTT 57.603 32.000 0.00 0.00 0.00 3.01
154 155 7.475840 ACTGTTGTTCAAATTCTTCTGACTTC 58.524 34.615 0.00 0.00 0.00 3.01
155 156 7.337942 ACTGTTGTTCAAATTCTTCTGACTTCT 59.662 33.333 0.00 0.00 0.00 2.85
156 157 7.697691 TGTTGTTCAAATTCTTCTGACTTCTC 58.302 34.615 0.00 0.00 0.00 2.87
157 158 7.554118 TGTTGTTCAAATTCTTCTGACTTCTCT 59.446 33.333 0.00 0.00 0.00 3.10
158 159 7.488187 TGTTCAAATTCTTCTGACTTCTCTG 57.512 36.000 0.00 0.00 0.00 3.35
159 160 6.017605 TGTTCAAATTCTTCTGACTTCTCTGC 60.018 38.462 0.00 0.00 0.00 4.26
160 161 4.999950 TCAAATTCTTCTGACTTCTCTGCC 59.000 41.667 0.00 0.00 0.00 4.85
161 162 3.625649 ATTCTTCTGACTTCTCTGCCC 57.374 47.619 0.00 0.00 0.00 5.36
162 163 2.015456 TCTTCTGACTTCTCTGCCCA 57.985 50.000 0.00 0.00 0.00 5.36
163 164 2.329267 TCTTCTGACTTCTCTGCCCAA 58.671 47.619 0.00 0.00 0.00 4.12
164 165 2.705658 TCTTCTGACTTCTCTGCCCAAA 59.294 45.455 0.00 0.00 0.00 3.28
165 166 3.328931 TCTTCTGACTTCTCTGCCCAAAT 59.671 43.478 0.00 0.00 0.00 2.32
166 167 3.340814 TCTGACTTCTCTGCCCAAATC 57.659 47.619 0.00 0.00 0.00 2.17
167 168 2.909006 TCTGACTTCTCTGCCCAAATCT 59.091 45.455 0.00 0.00 0.00 2.40
168 169 3.328931 TCTGACTTCTCTGCCCAAATCTT 59.671 43.478 0.00 0.00 0.00 2.40
169 170 3.415212 TGACTTCTCTGCCCAAATCTTG 58.585 45.455 0.00 0.00 0.00 3.02
170 171 2.163211 GACTTCTCTGCCCAAATCTTGC 59.837 50.000 0.00 0.00 0.00 4.01
171 172 1.131883 CTTCTCTGCCCAAATCTTGCG 59.868 52.381 0.00 0.00 0.00 4.85
172 173 0.324614 TCTCTGCCCAAATCTTGCGA 59.675 50.000 0.00 0.00 0.00 5.10
173 174 1.167851 CTCTGCCCAAATCTTGCGAA 58.832 50.000 0.00 0.00 0.00 4.70
174 175 0.881118 TCTGCCCAAATCTTGCGAAC 59.119 50.000 0.00 0.00 0.00 3.95
175 176 0.883833 CTGCCCAAATCTTGCGAACT 59.116 50.000 0.00 0.00 0.00 3.01
176 177 2.083774 CTGCCCAAATCTTGCGAACTA 58.916 47.619 0.00 0.00 0.00 2.24
177 178 2.487762 CTGCCCAAATCTTGCGAACTAA 59.512 45.455 0.00 0.00 0.00 2.24
178 179 3.088532 TGCCCAAATCTTGCGAACTAAT 58.911 40.909 0.00 0.00 0.00 1.73
179 180 3.128589 TGCCCAAATCTTGCGAACTAATC 59.871 43.478 0.00 0.00 0.00 1.75
180 181 3.128589 GCCCAAATCTTGCGAACTAATCA 59.871 43.478 0.00 0.00 0.00 2.57
181 182 4.380444 GCCCAAATCTTGCGAACTAATCAA 60.380 41.667 0.00 0.00 0.00 2.57
182 183 5.708948 CCCAAATCTTGCGAACTAATCAAA 58.291 37.500 0.00 0.00 0.00 2.69
183 184 6.155827 CCCAAATCTTGCGAACTAATCAAAA 58.844 36.000 0.00 0.00 0.00 2.44
184 185 6.644592 CCCAAATCTTGCGAACTAATCAAAAA 59.355 34.615 0.00 0.00 0.00 1.94
204 205 6.774354 AAAAACATGATGATGCAACTCAAC 57.226 33.333 0.00 0.00 32.14 3.18
205 206 5.717078 AAACATGATGATGCAACTCAACT 57.283 34.783 0.00 0.00 32.14 3.16
206 207 4.696899 ACATGATGATGCAACTCAACTG 57.303 40.909 0.00 0.00 32.14 3.16
207 208 4.077108 ACATGATGATGCAACTCAACTGT 58.923 39.130 0.00 0.00 32.14 3.55
208 209 4.082949 ACATGATGATGCAACTCAACTGTG 60.083 41.667 0.00 0.00 32.14 3.66
209 210 3.742385 TGATGATGCAACTCAACTGTGA 58.258 40.909 0.00 0.00 0.00 3.58
210 211 8.003046 ACATGATGATGCAACTCAACTGTGAG 62.003 42.308 0.00 2.20 43.96 3.51
216 217 4.983628 CTCAACTGTGAGCGCTCT 57.016 55.556 35.27 15.06 44.74 4.09
217 218 2.443146 CTCAACTGTGAGCGCTCTG 58.557 57.895 35.27 24.98 44.74 3.35
218 219 0.319383 CTCAACTGTGAGCGCTCTGT 60.319 55.000 35.27 26.63 44.74 3.41
219 220 0.104855 TCAACTGTGAGCGCTCTGTT 59.895 50.000 35.27 29.85 32.32 3.16
220 221 0.234106 CAACTGTGAGCGCTCTGTTG 59.766 55.000 33.49 33.49 39.39 3.33
221 222 0.882042 AACTGTGAGCGCTCTGTTGG 60.882 55.000 35.27 22.16 31.41 3.77
222 223 1.005748 CTGTGAGCGCTCTGTTGGA 60.006 57.895 35.27 13.88 0.00 3.53
223 224 1.005748 TGTGAGCGCTCTGTTGGAG 60.006 57.895 35.27 0.00 44.49 3.86
224 225 1.290324 GTGAGCGCTCTGTTGGAGA 59.710 57.895 35.27 12.31 44.45 3.71
234 235 4.342862 CTCTGTTGGAGAGGAGAAACAA 57.657 45.455 0.00 0.00 44.25 2.83
235 236 4.904241 CTCTGTTGGAGAGGAGAAACAAT 58.096 43.478 0.00 0.00 44.25 2.71
236 237 4.645535 TCTGTTGGAGAGGAGAAACAATG 58.354 43.478 0.00 0.00 32.50 2.82
237 238 4.103153 TCTGTTGGAGAGGAGAAACAATGT 59.897 41.667 0.00 0.00 32.50 2.71
238 239 5.306937 TCTGTTGGAGAGGAGAAACAATGTA 59.693 40.000 0.00 0.00 32.50 2.29
239 240 6.013379 TCTGTTGGAGAGGAGAAACAATGTAT 60.013 38.462 0.00 0.00 32.50 2.29
240 241 5.939883 TGTTGGAGAGGAGAAACAATGTATG 59.060 40.000 0.00 0.00 29.96 2.39
241 242 4.517285 TGGAGAGGAGAAACAATGTATGC 58.483 43.478 0.00 0.00 0.00 3.14
242 243 4.019411 TGGAGAGGAGAAACAATGTATGCA 60.019 41.667 0.00 0.00 0.00 3.96
243 244 4.333926 GGAGAGGAGAAACAATGTATGCAC 59.666 45.833 0.00 0.00 0.00 4.57
244 245 4.910195 AGAGGAGAAACAATGTATGCACA 58.090 39.130 0.00 0.00 39.52 4.57
245 246 4.940046 AGAGGAGAAACAATGTATGCACAG 59.060 41.667 0.00 0.00 38.30 3.66
246 247 4.655963 AGGAGAAACAATGTATGCACAGT 58.344 39.130 0.00 0.00 38.30 3.55
247 248 5.804639 AGGAGAAACAATGTATGCACAGTA 58.195 37.500 0.00 0.00 38.30 2.74
248 249 6.418101 AGGAGAAACAATGTATGCACAGTAT 58.582 36.000 0.00 0.00 38.30 2.12
249 250 6.886459 AGGAGAAACAATGTATGCACAGTATT 59.114 34.615 0.00 0.00 38.30 1.89
250 251 8.046708 AGGAGAAACAATGTATGCACAGTATTA 58.953 33.333 0.00 0.00 38.30 0.98
251 252 8.840321 GGAGAAACAATGTATGCACAGTATTAT 58.160 33.333 0.00 0.00 38.30 1.28
252 253 9.655769 GAGAAACAATGTATGCACAGTATTATG 57.344 33.333 0.00 0.00 38.30 1.90
253 254 9.177608 AGAAACAATGTATGCACAGTATTATGT 57.822 29.630 0.00 0.00 38.30 2.29
256 257 9.830975 AACAATGTATGCACAGTATTATGTAGA 57.169 29.630 0.00 0.00 38.30 2.59
289 290 0.605589 AAAAGGAGAAGGAACGGGCG 60.606 55.000 0.00 0.00 0.00 6.13
292 293 1.448013 GGAGAAGGAACGGGCGAAG 60.448 63.158 0.00 0.00 0.00 3.79
294 295 1.004918 AGAAGGAACGGGCGAAGTG 60.005 57.895 0.00 0.00 0.00 3.16
351 357 2.801699 GCCCCGTTTGTTTCTTCCTTTG 60.802 50.000 0.00 0.00 0.00 2.77
354 360 3.359654 CCGTTTGTTTCTTCCTTTGTCG 58.640 45.455 0.00 0.00 0.00 4.35
755 769 4.235731 GGGGTTTTGATCCGCGAT 57.764 55.556 8.23 0.00 0.00 4.58
1307 1337 0.668535 GTGCACTTTGACCTTGGACC 59.331 55.000 10.32 0.00 0.00 4.46
1309 1339 0.668535 GCACTTTGACCTTGGACCAC 59.331 55.000 0.00 0.00 0.00 4.16
1310 1340 0.944386 CACTTTGACCTTGGACCACG 59.056 55.000 0.00 0.00 0.00 4.94
1336 1366 2.796651 GCAGGATCGCCAAGCTTG 59.203 61.111 19.93 19.93 35.39 4.01
1431 1473 2.046023 CCCATCACTGGCGAGCAA 60.046 61.111 0.00 0.00 41.64 3.91
1434 1476 1.028330 CCATCACTGGCGAGCAATGT 61.028 55.000 0.00 0.00 35.23 2.71
1482 1524 4.329545 GACCACTTCTGCGGGGCA 62.330 66.667 0.00 0.00 36.92 5.36
1498 1540 4.801624 CAGTGCTCTGCGCCGCTA 62.802 66.667 11.67 0.00 40.23 4.26
1562 1604 6.127451 CCCTTTAAGGTGATATTGGTTTCCAC 60.127 42.308 10.40 0.00 31.93 4.02
1566 1608 2.422127 GGTGATATTGGTTTCCACGTGG 59.578 50.000 29.26 29.26 30.78 4.94
1571 1613 2.414994 TTGGTTTCCACGTGGTGTTA 57.585 45.000 32.74 12.31 36.34 2.41
1580 1622 1.658596 CACGTGGTGTTACGATGATGG 59.341 52.381 7.95 0.00 46.46 3.51
1589 1631 0.382873 TACGATGATGGACGAACCCG 59.617 55.000 0.00 0.00 42.50 5.28
1614 1656 1.891150 TGTGTTTACTCCTCGGAGACC 59.109 52.381 19.35 4.86 44.53 3.85
1638 1680 2.799017 GCATGGGGCAATATCATCTCA 58.201 47.619 0.00 0.00 43.97 3.27
1642 1684 2.154462 GGGGCAATATCATCTCAACGG 58.846 52.381 0.00 0.00 0.00 4.44
1658 1700 1.243902 ACGGCATTTCCACGTTTCAT 58.756 45.000 0.00 0.00 37.61 2.57
1673 1715 3.328505 GTTTCATTTGGGATGCTGGTTG 58.671 45.455 0.00 0.00 0.00 3.77
1681 1723 1.380302 GATGCTGGTTGGTCTGGGT 59.620 57.895 0.00 0.00 0.00 4.51
1690 1732 1.110442 TTGGTCTGGGTTGCTTGTTG 58.890 50.000 0.00 0.00 0.00 3.33
1714 1756 3.454941 GCACTTTACTGGTTGTGCG 57.545 52.632 0.00 0.00 44.60 5.34
1715 1757 0.040425 GCACTTTACTGGTTGTGCGG 60.040 55.000 0.00 0.00 44.60 5.69
1721 1763 0.878416 TACTGGTTGTGCGGAAATGC 59.122 50.000 0.00 0.00 0.00 3.56
1743 1785 5.888105 GCAGATTGCATACTTGAGTTTGAT 58.112 37.500 5.88 0.00 44.26 2.57
1747 1789 8.024865 CAGATTGCATACTTGAGTTTGATTTGA 58.975 33.333 5.88 0.00 0.00 2.69
1754 1796 9.252962 CATACTTGAGTTTGATTTGAAAAAGCT 57.747 29.630 0.00 0.00 0.00 3.74
1775 1817 2.131183 GAGTCTTGCTATCATCACCGC 58.869 52.381 0.00 0.00 0.00 5.68
1782 1824 0.034059 CTATCATCACCGCTCCACCC 59.966 60.000 0.00 0.00 0.00 4.61
1786 1828 1.097547 CATCACCGCTCCACCCATTC 61.098 60.000 0.00 0.00 0.00 2.67
1831 1873 2.131405 ATCCAGGCTGAGGATGACG 58.869 57.895 17.94 0.00 44.04 4.35
1846 1888 0.804364 TGACGCTATTGGCTTTGCTG 59.196 50.000 0.00 0.00 39.13 4.41
1847 1889 0.524180 GACGCTATTGGCTTTGCTGC 60.524 55.000 0.00 0.00 39.13 5.25
1855 1897 0.828762 TGGCTTTGCTGCATTGTCCT 60.829 50.000 1.84 0.00 34.04 3.85
1856 1898 1.176527 GGCTTTGCTGCATTGTCCTA 58.823 50.000 1.84 0.00 34.04 2.94
1858 1900 1.135286 GCTTTGCTGCATTGTCCTACC 60.135 52.381 1.84 0.00 0.00 3.18
1862 1904 1.369091 GCTGCATTGTCCTACCCACG 61.369 60.000 0.00 0.00 0.00 4.94
1958 2000 6.299805 ACATAACATTCTTGAGCTACCTCA 57.700 37.500 0.00 0.00 46.03 3.86
1974 2016 8.076910 AGCTACCTCATCATATTGATAGAAGG 57.923 38.462 0.00 9.49 34.28 3.46
1981 2023 9.205719 CTCATCATATTGATAGAAGGTCAACAG 57.794 37.037 0.00 0.00 38.31 3.16
1999 2041 8.688151 GGTCAACAGGTATATATGGATACTCTC 58.312 40.741 0.00 0.00 33.53 3.20
2037 2079 9.797556 GAAATATTTATACTTGTGGAACCCAAC 57.202 33.333 0.00 0.00 34.18 3.77
2040 2082 7.790782 ATTTATACTTGTGGAACCCAACAAT 57.209 32.000 0.00 0.00 34.18 2.71
2041 2083 6.582677 TTATACTTGTGGAACCCAACAATG 57.417 37.500 0.00 0.00 34.18 2.82
2042 2084 2.745968 ACTTGTGGAACCCAACAATGT 58.254 42.857 0.00 0.00 34.18 2.71
2060 2102 9.825972 CAACAATGTATACTTGGTTCAACTTAG 57.174 33.333 8.25 0.00 0.00 2.18
2073 2115 4.200838 TCAACTTAGGTCGATGCAATCA 57.799 40.909 0.00 0.00 45.97 2.57
2081 2123 3.055530 AGGTCGATGCAATCAAAGAGACT 60.056 43.478 0.00 0.00 45.97 3.24
2083 2125 4.201763 GGTCGATGCAATCAAAGAGACTTC 60.202 45.833 0.00 0.00 45.97 3.01
2085 2127 5.064452 GTCGATGCAATCAAAGAGACTTCAT 59.936 40.000 0.00 0.00 45.97 2.57
2086 2128 5.064325 TCGATGCAATCAAAGAGACTTCATG 59.936 40.000 0.00 0.00 45.97 3.07
2087 2129 5.578005 ATGCAATCAAAGAGACTTCATGG 57.422 39.130 0.00 0.00 0.00 3.66
2090 2132 5.713389 TGCAATCAAAGAGACTTCATGGAAT 59.287 36.000 0.00 0.00 0.00 3.01
2091 2133 6.885918 TGCAATCAAAGAGACTTCATGGAATA 59.114 34.615 0.00 0.00 0.00 1.75
2092 2134 7.066645 TGCAATCAAAGAGACTTCATGGAATAG 59.933 37.037 0.00 0.00 0.00 1.73
2095 2137 9.917887 AATCAAAGAGACTTCATGGAATAGATT 57.082 29.630 0.00 0.00 0.00 2.40
2096 2138 8.728337 TCAAAGAGACTTCATGGAATAGATTG 57.272 34.615 0.00 0.00 0.00 2.67
2097 2139 8.324306 TCAAAGAGACTTCATGGAATAGATTGT 58.676 33.333 0.00 0.00 0.00 2.71
2098 2140 9.605275 CAAAGAGACTTCATGGAATAGATTGTA 57.395 33.333 0.00 0.00 0.00 2.41
2100 2142 9.995003 AAGAGACTTCATGGAATAGATTGTATC 57.005 33.333 0.00 0.00 0.00 2.24
2101 2143 9.152327 AGAGACTTCATGGAATAGATTGTATCA 57.848 33.333 0.00 0.00 0.00 2.15
2102 2144 9.941325 GAGACTTCATGGAATAGATTGTATCAT 57.059 33.333 0.00 0.00 0.00 2.45
2129 2171 2.549754 ACCATGCTTTCACGAGTTTCTG 59.450 45.455 0.00 0.00 0.00 3.02
2141 2183 3.638160 ACGAGTTTCTGTACACCAGGTAA 59.362 43.478 0.00 0.00 41.83 2.85
2157 2199 6.708054 CACCAGGTAATTTCTCATCCATAGTC 59.292 42.308 0.00 0.00 0.00 2.59
2158 2200 6.183361 ACCAGGTAATTTCTCATCCATAGTCC 60.183 42.308 0.00 0.00 0.00 3.85
2169 2211 8.056407 TCTCATCCATAGTCCTTATATTGTCG 57.944 38.462 0.00 0.00 0.00 4.35
2173 2215 6.312529 TCCATAGTCCTTATATTGTCGGAGT 58.687 40.000 0.00 0.00 33.90 3.85
2175 2217 7.946219 TCCATAGTCCTTATATTGTCGGAGTAA 59.054 37.037 0.00 0.00 35.67 2.24
2176 2218 8.750298 CCATAGTCCTTATATTGTCGGAGTAAT 58.250 37.037 0.00 0.00 35.67 1.89
2178 2220 7.834881 AGTCCTTATATTGTCGGAGTAATCA 57.165 36.000 0.00 0.00 0.00 2.57
2180 2222 8.701895 AGTCCTTATATTGTCGGAGTAATCAAA 58.298 33.333 0.00 0.00 0.00 2.69
2195 2237 8.912988 GGAGTAATCAAATCCATTTATGTTCCA 58.087 33.333 0.00 0.00 33.08 3.53
2228 2270 8.731275 TTGTTCGATCATCTATATTGTGGTTT 57.269 30.769 0.00 0.00 0.00 3.27
2229 2271 8.365399 TGTTCGATCATCTATATTGTGGTTTC 57.635 34.615 0.00 0.00 0.00 2.78
2233 2275 6.424812 CGATCATCTATATTGTGGTTTCTGCA 59.575 38.462 0.00 0.00 0.00 4.41
2239 2281 3.715628 ATTGTGGTTTCTGCAAGTCAC 57.284 42.857 0.00 0.00 33.76 3.67
2241 2283 3.552132 TGTGGTTTCTGCAAGTCACTA 57.448 42.857 0.00 0.00 33.76 2.74
2250 2292 5.483685 TCTGCAAGTCACTAACAACCTAT 57.516 39.130 0.00 0.00 33.76 2.57
2293 2341 7.021790 GCTACAAAGACAACTTAAGTTATGGC 58.978 38.462 20.15 12.47 36.32 4.40
2295 2343 5.830991 ACAAAGACAACTTAAGTTATGGCCA 59.169 36.000 20.15 8.56 36.32 5.36
2336 2384 7.962964 TTATTAGTTGTCTTCACTCTTGTGG 57.037 36.000 0.00 0.00 43.94 4.17
2362 2410 9.820725 GGATCCAAATCAAATGTCAAATGAATA 57.179 29.630 6.95 0.00 33.21 1.75
2397 2445 8.951787 AAATCAAATTACAGTATGCATGCAAT 57.048 26.923 26.68 15.44 42.53 3.56
2453 2501 5.162000 AGCTAGCAATTTTTATGTCGCTC 57.838 39.130 18.83 0.00 0.00 5.03
2454 2502 3.962481 GCTAGCAATTTTTATGTCGCTCG 59.038 43.478 10.63 0.00 0.00 5.03
2456 2504 1.846175 GCAATTTTTATGTCGCTCGGC 59.154 47.619 0.00 0.00 0.00 5.54
2502 2550 8.237267 CCCTCTGTGTTATTGATACTTCAAAAC 58.763 37.037 0.00 1.26 44.70 2.43
2524 2572 8.433421 AAACACCTTGATATATAGAAACCACG 57.567 34.615 0.00 0.00 0.00 4.94
2530 2578 7.277981 CCTTGATATATAGAAACCACGGTATGC 59.722 40.741 0.00 0.00 0.00 3.14
2532 2580 7.903145 TGATATATAGAAACCACGGTATGCTT 58.097 34.615 0.00 0.00 0.00 3.91
2533 2581 8.033038 TGATATATAGAAACCACGGTATGCTTC 58.967 37.037 0.00 0.00 0.00 3.86
2556 2604 6.408035 TCATCCACAAGCAAAAATAATGCAT 58.592 32.000 0.00 0.00 46.22 3.96
2557 2605 6.879993 TCATCCACAAGCAAAAATAATGCATT 59.120 30.769 17.56 17.56 46.22 3.56
2596 2644 8.150945 TGGTTTTTATAATACTTTGCTGCCAAA 58.849 29.630 0.00 0.00 38.56 3.28
2633 2681 9.703892 ATCTTTTATCAGCATGTGATCTACTAC 57.296 33.333 12.23 0.00 42.80 2.73
2665 2714 4.028131 TCGTATGACCCCACATTTACTCT 58.972 43.478 0.00 0.00 0.00 3.24
2682 2731 3.786635 ACTCTGAATCATGTAAGGCGTC 58.213 45.455 0.00 0.00 0.00 5.19
2756 2805 3.675225 CACCACTGACAACAACTCTATCG 59.325 47.826 0.00 0.00 0.00 2.92
2795 2844 1.674817 CCCGTACACCATGGACAAGAC 60.675 57.143 21.47 7.77 34.93 3.01
2814 2863 1.081175 GCAACTCTTTCTTGGCGCC 60.081 57.895 22.73 22.73 0.00 6.53
2819 2868 1.152860 TCTTTCTTGGCGCCAACCA 60.153 52.632 37.30 23.62 38.16 3.67
2861 2910 4.762289 ACTCCATCATTTCTCTACACCC 57.238 45.455 0.00 0.00 0.00 4.61
2882 2931 0.168788 GACACCATGGACATGTTGCG 59.831 55.000 21.47 0.00 35.00 4.85
2886 2935 1.138036 CATGGACATGTTGCGGCTG 59.862 57.895 0.00 0.00 34.23 4.85
2905 2954 3.441572 GCTGCATGTGAAAACACTATCCT 59.558 43.478 0.00 0.00 0.00 3.24
2920 2969 2.839098 CCTGCTGAAGGGGTGTGT 59.161 61.111 0.00 0.00 43.15 3.72
2921 2970 1.601759 CCTGCTGAAGGGGTGTGTG 60.602 63.158 0.00 0.00 43.15 3.82
2922 2971 2.203337 TGCTGAAGGGGTGTGTGC 60.203 61.111 0.00 0.00 0.00 4.57
2923 2972 2.113986 GCTGAAGGGGTGTGTGCT 59.886 61.111 0.00 0.00 0.00 4.40
2924 2973 1.374947 GCTGAAGGGGTGTGTGCTA 59.625 57.895 0.00 0.00 0.00 3.49
2956 3268 2.840038 TCTTCCTAGATGCAAGGCTCAA 59.160 45.455 0.00 0.00 33.84 3.02
2972 3284 5.121811 AGGCTCAAGACATTATGACATGAC 58.878 41.667 0.00 0.00 0.00 3.06
2977 3289 5.105351 TCAAGACATTATGACATGACGGACT 60.105 40.000 0.00 0.00 0.00 3.85
2992 3304 9.516546 ACATGACGGACTAATAGATCAGTAATA 57.483 33.333 0.00 0.00 0.00 0.98
3037 3352 1.368019 CTGTTGCAACGCACAGACG 60.368 57.895 23.79 2.03 38.71 4.18
3048 3363 1.009829 GCACAGACGCATTTCCTAGG 58.990 55.000 0.82 0.82 0.00 3.02
3051 3366 2.932614 CACAGACGCATTTCCTAGGAAG 59.067 50.000 23.11 14.44 35.38 3.46
3068 3383 8.392479 TCCTAGGAAGTAGAATAATACTCCCTC 58.608 40.741 9.71 0.00 35.78 4.30
3119 3434 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
3120 3435 4.994282 TCCACTATGGACTACATACGGAT 58.006 43.478 0.00 0.00 42.67 4.18
3121 3436 4.765339 TCCACTATGGACTACATACGGATG 59.235 45.833 5.94 5.94 42.67 3.51
3122 3437 4.486090 CACTATGGACTACATACGGATGC 58.514 47.826 7.78 0.00 41.03 3.91
3123 3438 4.022329 CACTATGGACTACATACGGATGCA 60.022 45.833 7.78 0.00 41.03 3.96
3124 3439 4.772624 ACTATGGACTACATACGGATGCAT 59.227 41.667 7.78 0.00 41.03 3.96
3125 3440 5.949952 ACTATGGACTACATACGGATGCATA 59.050 40.000 7.78 6.16 41.03 3.14
3126 3441 5.939764 ATGGACTACATACGGATGCATAT 57.060 39.130 7.78 0.00 38.26 1.78
3127 3442 7.778382 ACTATGGACTACATACGGATGCATATA 59.222 37.037 7.78 0.00 41.03 0.86
3128 3443 6.451064 TGGACTACATACGGATGCATATAG 57.549 41.667 7.78 4.48 36.43 1.31
3129 3444 6.184789 TGGACTACATACGGATGCATATAGA 58.815 40.000 7.78 0.00 36.43 1.98
3130 3445 6.095021 TGGACTACATACGGATGCATATAGAC 59.905 42.308 7.78 2.44 36.43 2.59
3131 3446 6.095021 GGACTACATACGGATGCATATAGACA 59.905 42.308 7.78 0.00 36.43 3.41
3132 3447 7.201830 GGACTACATACGGATGCATATAGACAT 60.202 40.741 7.78 0.00 36.43 3.06
3133 3448 8.747538 ACTACATACGGATGCATATAGACATA 57.252 34.615 7.78 0.00 36.43 2.29
3134 3449 9.355916 ACTACATACGGATGCATATAGACATAT 57.644 33.333 7.78 0.00 36.43 1.78
3136 3451 8.877808 ACATACGGATGCATATAGACATATTG 57.122 34.615 7.78 0.00 36.43 1.90
3137 3452 7.439356 ACATACGGATGCATATAGACATATTGC 59.561 37.037 7.78 0.00 36.43 3.56
3138 3453 5.733676 ACGGATGCATATAGACATATTGCA 58.266 37.500 0.00 0.00 38.53 4.08
3139 3454 6.172630 ACGGATGCATATAGACATATTGCAA 58.827 36.000 0.00 0.00 38.12 4.08
3140 3455 6.654582 ACGGATGCATATAGACATATTGCAAA 59.345 34.615 1.71 0.00 38.12 3.68
3141 3456 7.148356 ACGGATGCATATAGACATATTGCAAAG 60.148 37.037 1.71 0.00 38.12 2.77
3142 3457 7.148356 CGGATGCATATAGACATATTGCAAAGT 60.148 37.037 1.71 2.30 38.12 2.66
3143 3458 7.966753 GGATGCATATAGACATATTGCAAAGTG 59.033 37.037 1.71 8.09 38.12 3.16
3144 3459 7.806409 TGCATATAGACATATTGCAAAGTGT 57.194 32.000 16.95 16.95 34.94 3.55
3145 3460 7.641760 TGCATATAGACATATTGCAAAGTGTG 58.358 34.615 20.56 9.48 34.94 3.82
3161 3476 6.308675 CAAAGTGTGCATTTATCCAATTTGC 58.691 36.000 11.13 0.00 36.50 3.68
3162 3477 5.410355 AGTGTGCATTTATCCAATTTGCT 57.590 34.783 0.00 0.00 0.00 3.91
3163 3478 5.797051 AGTGTGCATTTATCCAATTTGCTT 58.203 33.333 0.00 0.00 0.00 3.91
3164 3479 5.870978 AGTGTGCATTTATCCAATTTGCTTC 59.129 36.000 0.00 0.00 0.00 3.86
3165 3480 4.863689 TGTGCATTTATCCAATTTGCTTCG 59.136 37.500 0.00 0.00 0.00 3.79
3166 3481 4.864247 GTGCATTTATCCAATTTGCTTCGT 59.136 37.500 0.00 0.00 0.00 3.85
3167 3482 6.033341 GTGCATTTATCCAATTTGCTTCGTA 58.967 36.000 0.00 0.00 0.00 3.43
3168 3483 6.697019 GTGCATTTATCCAATTTGCTTCGTAT 59.303 34.615 0.00 0.00 0.00 3.06
3169 3484 6.696583 TGCATTTATCCAATTTGCTTCGTATG 59.303 34.615 0.00 0.00 0.00 2.39
3170 3485 6.697019 GCATTTATCCAATTTGCTTCGTATGT 59.303 34.615 0.00 0.00 0.00 2.29
3171 3486 7.860373 GCATTTATCCAATTTGCTTCGTATGTA 59.140 33.333 0.00 0.00 0.00 2.29
3172 3487 9.385902 CATTTATCCAATTTGCTTCGTATGTAG 57.614 33.333 0.00 0.00 0.00 2.74
3173 3488 8.500753 TTTATCCAATTTGCTTCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
3174 3489 6.604735 ATCCAATTTGCTTCGTATGTAGTC 57.395 37.500 0.00 0.00 0.00 2.59
3175 3490 4.873827 TCCAATTTGCTTCGTATGTAGTCC 59.126 41.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.303395 GGTCTCTCTTGCTTTGTTTGACG 60.303 47.826 0.00 0.00 0.00 4.35
1 2 3.627577 TGGTCTCTCTTGCTTTGTTTGAC 59.372 43.478 0.00 0.00 0.00 3.18
2 3 3.627577 GTGGTCTCTCTTGCTTTGTTTGA 59.372 43.478 0.00 0.00 0.00 2.69
3 4 3.629398 AGTGGTCTCTCTTGCTTTGTTTG 59.371 43.478 0.00 0.00 0.00 2.93
4 5 3.629398 CAGTGGTCTCTCTTGCTTTGTTT 59.371 43.478 0.00 0.00 0.00 2.83
5 6 3.209410 CAGTGGTCTCTCTTGCTTTGTT 58.791 45.455 0.00 0.00 0.00 2.83
6 7 2.171448 ACAGTGGTCTCTCTTGCTTTGT 59.829 45.455 0.00 0.00 0.00 2.83
7 8 2.843701 ACAGTGGTCTCTCTTGCTTTG 58.156 47.619 0.00 0.00 0.00 2.77
8 9 3.209410 CAACAGTGGTCTCTCTTGCTTT 58.791 45.455 0.00 0.00 0.00 3.51
9 10 2.486191 CCAACAGTGGTCTCTCTTGCTT 60.486 50.000 0.00 0.00 40.42 3.91
10 11 1.071385 CCAACAGTGGTCTCTCTTGCT 59.929 52.381 0.00 0.00 40.42 3.91
11 12 1.070758 TCCAACAGTGGTCTCTCTTGC 59.929 52.381 0.00 0.00 46.11 4.01
12 13 3.475566 TTCCAACAGTGGTCTCTCTTG 57.524 47.619 0.00 0.00 46.11 3.02
13 14 5.825593 TTATTCCAACAGTGGTCTCTCTT 57.174 39.130 0.00 0.00 46.11 2.85
14 15 5.308237 AGTTTATTCCAACAGTGGTCTCTCT 59.692 40.000 0.00 0.00 46.11 3.10
15 16 5.552178 AGTTTATTCCAACAGTGGTCTCTC 58.448 41.667 0.00 0.00 46.11 3.20
16 17 5.308237 AGAGTTTATTCCAACAGTGGTCTCT 59.692 40.000 0.00 0.00 46.11 3.10
17 18 5.552178 AGAGTTTATTCCAACAGTGGTCTC 58.448 41.667 0.00 0.00 46.11 3.36
18 19 5.568620 AGAGTTTATTCCAACAGTGGTCT 57.431 39.130 0.00 0.00 46.11 3.85
19 20 5.048713 CCAAGAGTTTATTCCAACAGTGGTC 60.049 44.000 0.00 0.00 46.11 4.02
20 21 4.827284 CCAAGAGTTTATTCCAACAGTGGT 59.173 41.667 0.00 0.00 46.11 4.16
22 23 6.633500 TTCCAAGAGTTTATTCCAACAGTG 57.367 37.500 0.00 0.00 0.00 3.66
23 24 7.505585 TGATTTCCAAGAGTTTATTCCAACAGT 59.494 33.333 0.00 0.00 0.00 3.55
24 25 7.885297 TGATTTCCAAGAGTTTATTCCAACAG 58.115 34.615 0.00 0.00 0.00 3.16
25 26 7.831691 TGATTTCCAAGAGTTTATTCCAACA 57.168 32.000 0.00 0.00 0.00 3.33
26 27 8.522830 TGATGATTTCCAAGAGTTTATTCCAAC 58.477 33.333 0.00 0.00 0.00 3.77
27 28 8.648698 TGATGATTTCCAAGAGTTTATTCCAA 57.351 30.769 0.00 0.00 0.00 3.53
28 29 7.340232 CCTGATGATTTCCAAGAGTTTATTCCA 59.660 37.037 0.00 0.00 0.00 3.53
29 30 7.682981 GCCTGATGATTTCCAAGAGTTTATTCC 60.683 40.741 0.00 0.00 0.00 3.01
30 31 7.199078 GCCTGATGATTTCCAAGAGTTTATTC 58.801 38.462 0.00 0.00 0.00 1.75
31 32 6.097412 GGCCTGATGATTTCCAAGAGTTTATT 59.903 38.462 0.00 0.00 0.00 1.40
32 33 5.595952 GGCCTGATGATTTCCAAGAGTTTAT 59.404 40.000 0.00 0.00 0.00 1.40
33 34 4.949856 GGCCTGATGATTTCCAAGAGTTTA 59.050 41.667 0.00 0.00 0.00 2.01
34 35 3.766051 GGCCTGATGATTTCCAAGAGTTT 59.234 43.478 0.00 0.00 0.00 2.66
35 36 3.359950 GGCCTGATGATTTCCAAGAGTT 58.640 45.455 0.00 0.00 0.00 3.01
36 37 2.357569 GGGCCTGATGATTTCCAAGAGT 60.358 50.000 0.84 0.00 0.00 3.24
37 38 2.305009 GGGCCTGATGATTTCCAAGAG 58.695 52.381 0.84 0.00 0.00 2.85
38 39 1.408683 CGGGCCTGATGATTTCCAAGA 60.409 52.381 5.28 0.00 0.00 3.02
39 40 1.027357 CGGGCCTGATGATTTCCAAG 58.973 55.000 5.28 0.00 0.00 3.61
40 41 1.037030 GCGGGCCTGATGATTTCCAA 61.037 55.000 18.31 0.00 0.00 3.53
41 42 1.453745 GCGGGCCTGATGATTTCCA 60.454 57.895 18.31 0.00 0.00 3.53
42 43 2.196245 GGCGGGCCTGATGATTTCC 61.196 63.158 18.31 0.07 0.00 3.13
43 44 2.546494 CGGCGGGCCTGATGATTTC 61.546 63.158 18.31 0.00 0.00 2.17
44 45 2.516930 CGGCGGGCCTGATGATTT 60.517 61.111 18.31 0.00 0.00 2.17
45 46 3.797353 ACGGCGGGCCTGATGATT 61.797 61.111 18.31 0.00 0.00 2.57
46 47 4.552365 CACGGCGGGCCTGATGAT 62.552 66.667 18.31 0.00 0.00 2.45
68 69 1.735198 TCGTAAGCCGAGCGTTTGG 60.735 57.895 0.14 0.14 41.60 3.28
69 70 3.850923 TCGTAAGCCGAGCGTTTG 58.149 55.556 0.00 0.00 41.60 2.93
85 86 2.436824 GCTCCTGCCGAACCCTTC 60.437 66.667 0.00 0.00 0.00 3.46
86 87 3.249189 TGCTCCTGCCGAACCCTT 61.249 61.111 0.00 0.00 38.71 3.95
87 88 3.710722 CTGCTCCTGCCGAACCCT 61.711 66.667 0.00 0.00 38.71 4.34
89 90 3.909086 AAGCTGCTCCTGCCGAACC 62.909 63.158 1.00 0.00 38.71 3.62
90 91 2.359230 AAGCTGCTCCTGCCGAAC 60.359 61.111 1.00 0.00 38.71 3.95
91 92 2.046892 GAAGCTGCTCCTGCCGAA 60.047 61.111 1.00 0.00 38.71 4.30
92 93 4.087892 GGAAGCTGCTCCTGCCGA 62.088 66.667 1.00 0.00 38.71 5.54
93 94 3.618780 AAGGAAGCTGCTCCTGCCG 62.619 63.158 17.49 0.00 45.59 5.69
94 95 1.748500 GAAGGAAGCTGCTCCTGCC 60.749 63.158 17.49 10.76 45.59 4.85
95 96 0.607489 TTGAAGGAAGCTGCTCCTGC 60.607 55.000 17.49 16.38 45.59 4.85
96 97 1.901591 TTTGAAGGAAGCTGCTCCTG 58.098 50.000 17.49 0.00 45.59 3.86
98 99 2.422832 CAGATTTGAAGGAAGCTGCTCC 59.577 50.000 1.00 6.32 36.40 4.70
99 100 3.341823 TCAGATTTGAAGGAAGCTGCTC 58.658 45.455 1.00 0.00 41.51 4.26
100 101 3.008813 TCTCAGATTTGAAGGAAGCTGCT 59.991 43.478 0.00 0.00 41.51 4.24
101 102 3.341823 TCTCAGATTTGAAGGAAGCTGC 58.658 45.455 0.00 0.00 41.51 5.25
102 103 3.940221 CCTCTCAGATTTGAAGGAAGCTG 59.060 47.826 8.06 0.00 42.73 4.24
103 104 3.621958 GCCTCTCAGATTTGAAGGAAGCT 60.622 47.826 14.57 0.00 35.43 3.74
104 105 2.682352 GCCTCTCAGATTTGAAGGAAGC 59.318 50.000 14.57 1.18 35.43 3.86
105 106 3.277715 GGCCTCTCAGATTTGAAGGAAG 58.722 50.000 14.57 0.42 35.43 3.46
106 107 2.644299 TGGCCTCTCAGATTTGAAGGAA 59.356 45.455 3.32 3.88 35.43 3.36
107 108 2.269023 TGGCCTCTCAGATTTGAAGGA 58.731 47.619 3.32 0.00 35.43 3.36
108 109 2.795231 TGGCCTCTCAGATTTGAAGG 57.205 50.000 3.32 8.97 35.99 3.46
109 110 4.077822 AGTTTGGCCTCTCAGATTTGAAG 58.922 43.478 3.32 0.00 31.69 3.02
110 111 3.822735 CAGTTTGGCCTCTCAGATTTGAA 59.177 43.478 3.32 0.00 31.69 2.69
111 112 3.181440 ACAGTTTGGCCTCTCAGATTTGA 60.181 43.478 3.32 0.00 0.00 2.69
112 113 3.152341 ACAGTTTGGCCTCTCAGATTTG 58.848 45.455 3.32 0.00 0.00 2.32
113 114 3.515602 ACAGTTTGGCCTCTCAGATTT 57.484 42.857 3.32 0.00 0.00 2.17
114 115 3.152341 CAACAGTTTGGCCTCTCAGATT 58.848 45.455 3.32 0.00 0.00 2.40
115 116 2.107204 ACAACAGTTTGGCCTCTCAGAT 59.893 45.455 3.32 0.00 37.00 2.90
116 117 1.490490 ACAACAGTTTGGCCTCTCAGA 59.510 47.619 3.32 0.00 37.00 3.27
117 118 1.972872 ACAACAGTTTGGCCTCTCAG 58.027 50.000 3.32 0.00 37.00 3.35
118 119 2.297701 GAACAACAGTTTGGCCTCTCA 58.702 47.619 3.32 0.00 37.00 3.27
119 120 2.297701 TGAACAACAGTTTGGCCTCTC 58.702 47.619 3.32 0.00 37.00 3.20
120 121 2.435372 TGAACAACAGTTTGGCCTCT 57.565 45.000 3.32 0.00 37.00 3.69
121 122 3.518634 TTTGAACAACAGTTTGGCCTC 57.481 42.857 3.32 0.00 37.00 4.70
122 123 4.162131 AGAATTTGAACAACAGTTTGGCCT 59.838 37.500 3.32 0.00 37.00 5.19
123 124 4.441792 AGAATTTGAACAACAGTTTGGCC 58.558 39.130 0.00 0.00 37.00 5.36
124 125 5.812127 AGAAGAATTTGAACAACAGTTTGGC 59.188 36.000 0.00 0.00 37.00 4.52
125 126 7.009540 GTCAGAAGAATTTGAACAACAGTTTGG 59.990 37.037 0.00 0.00 37.00 3.28
126 127 7.756722 AGTCAGAAGAATTTGAACAACAGTTTG 59.243 33.333 0.00 0.00 38.83 2.93
127 128 7.830739 AGTCAGAAGAATTTGAACAACAGTTT 58.169 30.769 0.00 0.00 0.00 2.66
128 129 7.396540 AGTCAGAAGAATTTGAACAACAGTT 57.603 32.000 0.00 0.00 0.00 3.16
129 130 7.337942 AGAAGTCAGAAGAATTTGAACAACAGT 59.662 33.333 0.00 0.00 31.24 3.55
130 131 7.701445 AGAAGTCAGAAGAATTTGAACAACAG 58.299 34.615 0.00 0.00 31.24 3.16
131 132 7.554118 AGAGAAGTCAGAAGAATTTGAACAACA 59.446 33.333 0.00 0.00 31.24 3.33
132 133 7.854916 CAGAGAAGTCAGAAGAATTTGAACAAC 59.145 37.037 0.00 0.00 31.24 3.32
133 134 7.467811 GCAGAGAAGTCAGAAGAATTTGAACAA 60.468 37.037 0.00 0.00 31.24 2.83
134 135 6.017605 GCAGAGAAGTCAGAAGAATTTGAACA 60.018 38.462 0.00 0.00 31.24 3.18
135 136 6.369799 GCAGAGAAGTCAGAAGAATTTGAAC 58.630 40.000 0.00 0.00 31.24 3.18
136 137 5.471456 GGCAGAGAAGTCAGAAGAATTTGAA 59.529 40.000 0.00 0.00 31.24 2.69
137 138 4.999950 GGCAGAGAAGTCAGAAGAATTTGA 59.000 41.667 0.00 0.00 31.24 2.69
138 139 4.155644 GGGCAGAGAAGTCAGAAGAATTTG 59.844 45.833 0.00 0.00 31.24 2.32
139 140 4.202503 TGGGCAGAGAAGTCAGAAGAATTT 60.203 41.667 0.00 0.00 31.24 1.82
140 141 3.328931 TGGGCAGAGAAGTCAGAAGAATT 59.671 43.478 0.00 0.00 34.26 2.17
141 142 2.909006 TGGGCAGAGAAGTCAGAAGAAT 59.091 45.455 0.00 0.00 0.00 2.40
142 143 2.329267 TGGGCAGAGAAGTCAGAAGAA 58.671 47.619 0.00 0.00 0.00 2.52
143 144 2.015456 TGGGCAGAGAAGTCAGAAGA 57.985 50.000 0.00 0.00 0.00 2.87
144 145 2.847327 TTGGGCAGAGAAGTCAGAAG 57.153 50.000 0.00 0.00 0.00 2.85
145 146 3.328931 AGATTTGGGCAGAGAAGTCAGAA 59.671 43.478 0.00 0.00 0.00 3.02
146 147 2.909006 AGATTTGGGCAGAGAAGTCAGA 59.091 45.455 0.00 0.00 0.00 3.27
147 148 3.347077 AGATTTGGGCAGAGAAGTCAG 57.653 47.619 0.00 0.00 0.00 3.51
148 149 3.415212 CAAGATTTGGGCAGAGAAGTCA 58.585 45.455 0.00 0.00 0.00 3.41
149 150 2.163211 GCAAGATTTGGGCAGAGAAGTC 59.837 50.000 0.00 0.00 0.00 3.01
150 151 2.165998 GCAAGATTTGGGCAGAGAAGT 58.834 47.619 0.00 0.00 0.00 3.01
151 152 1.131883 CGCAAGATTTGGGCAGAGAAG 59.868 52.381 0.00 0.00 43.02 2.85
152 153 1.167851 CGCAAGATTTGGGCAGAGAA 58.832 50.000 0.00 0.00 43.02 2.87
153 154 0.324614 TCGCAAGATTTGGGCAGAGA 59.675 50.000 1.45 0.00 45.01 3.10
154 155 2.858622 TCGCAAGATTTGGGCAGAG 58.141 52.632 1.45 0.00 45.01 3.35
181 182 6.422701 CAGTTGAGTTGCATCATCATGTTTTT 59.577 34.615 0.00 0.00 31.86 1.94
182 183 5.924254 CAGTTGAGTTGCATCATCATGTTTT 59.076 36.000 0.00 0.00 31.86 2.43
183 184 5.010314 ACAGTTGAGTTGCATCATCATGTTT 59.990 36.000 0.00 0.00 31.86 2.83
184 185 4.521639 ACAGTTGAGTTGCATCATCATGTT 59.478 37.500 0.00 0.00 31.86 2.71
185 186 4.077108 ACAGTTGAGTTGCATCATCATGT 58.923 39.130 0.00 0.00 31.86 3.21
186 187 4.155280 TCACAGTTGAGTTGCATCATCATG 59.845 41.667 0.00 0.00 0.00 3.07
187 188 4.329392 TCACAGTTGAGTTGCATCATCAT 58.671 39.130 0.00 0.00 0.00 2.45
188 189 3.742385 TCACAGTTGAGTTGCATCATCA 58.258 40.909 0.00 0.00 0.00 3.07
189 190 4.337985 CTCACAGTTGAGTTGCATCATC 57.662 45.455 0.00 0.00 43.95 2.92
200 201 0.104855 AACAGAGCGCTCACAGTTGA 59.895 50.000 36.87 0.00 0.00 3.18
201 202 0.234106 CAACAGAGCGCTCACAGTTG 59.766 55.000 34.46 34.46 34.99 3.16
202 203 0.882042 CCAACAGAGCGCTCACAGTT 60.882 55.000 36.87 30.99 0.00 3.16
203 204 1.301244 CCAACAGAGCGCTCACAGT 60.301 57.895 36.87 27.70 0.00 3.55
204 205 1.005748 TCCAACAGAGCGCTCACAG 60.006 57.895 36.87 27.07 0.00 3.66
205 206 1.005748 CTCCAACAGAGCGCTCACA 60.006 57.895 36.87 13.84 35.31 3.58
206 207 0.735632 CTCTCCAACAGAGCGCTCAC 60.736 60.000 36.87 14.44 42.56 3.51
207 208 1.588597 CTCTCCAACAGAGCGCTCA 59.411 57.895 36.87 16.02 42.56 4.26
208 209 1.153667 CCTCTCCAACAGAGCGCTC 60.154 63.158 30.01 30.01 46.90 5.03
209 210 1.603236 CTCCTCTCCAACAGAGCGCT 61.603 60.000 11.27 11.27 46.90 5.92
210 211 1.153667 CTCCTCTCCAACAGAGCGC 60.154 63.158 0.00 0.00 46.90 5.92
211 212 0.891373 TTCTCCTCTCCAACAGAGCG 59.109 55.000 0.00 0.00 46.90 5.03
212 213 2.037772 TGTTTCTCCTCTCCAACAGAGC 59.962 50.000 0.00 0.00 46.90 4.09
214 215 4.103153 ACATTGTTTCTCCTCTCCAACAGA 59.897 41.667 0.00 0.00 31.00 3.41
215 216 4.392940 ACATTGTTTCTCCTCTCCAACAG 58.607 43.478 0.00 0.00 31.00 3.16
216 217 4.437682 ACATTGTTTCTCCTCTCCAACA 57.562 40.909 0.00 0.00 0.00 3.33
217 218 5.163713 GCATACATTGTTTCTCCTCTCCAAC 60.164 44.000 0.00 0.00 0.00 3.77
218 219 4.943705 GCATACATTGTTTCTCCTCTCCAA 59.056 41.667 0.00 0.00 0.00 3.53
219 220 4.019411 TGCATACATTGTTTCTCCTCTCCA 60.019 41.667 0.00 0.00 0.00 3.86
220 221 4.333926 GTGCATACATTGTTTCTCCTCTCC 59.666 45.833 0.00 0.00 0.00 3.71
221 222 4.937620 TGTGCATACATTGTTTCTCCTCTC 59.062 41.667 0.00 0.00 0.00 3.20
222 223 4.910195 TGTGCATACATTGTTTCTCCTCT 58.090 39.130 0.00 0.00 0.00 3.69
223 224 4.697352 ACTGTGCATACATTGTTTCTCCTC 59.303 41.667 0.00 0.00 35.97 3.71
224 225 4.655963 ACTGTGCATACATTGTTTCTCCT 58.344 39.130 0.00 0.00 35.97 3.69
225 226 6.683974 ATACTGTGCATACATTGTTTCTCC 57.316 37.500 0.00 0.00 35.97 3.71
226 227 9.655769 CATAATACTGTGCATACATTGTTTCTC 57.344 33.333 0.00 0.00 35.97 2.87
227 228 9.177608 ACATAATACTGTGCATACATTGTTTCT 57.822 29.630 0.00 0.00 35.97 2.52
230 231 9.830975 TCTACATAATACTGTGCATACATTGTT 57.169 29.630 0.00 0.00 35.97 2.83
255 256 9.541143 CCTTCTCCTTTTCTTTCTATCTACATC 57.459 37.037 0.00 0.00 0.00 3.06
256 257 9.273137 TCCTTCTCCTTTTCTTTCTATCTACAT 57.727 33.333 0.00 0.00 0.00 2.29
257 258 8.666129 TCCTTCTCCTTTTCTTTCTATCTACA 57.334 34.615 0.00 0.00 0.00 2.74
258 259 9.373603 GTTCCTTCTCCTTTTCTTTCTATCTAC 57.626 37.037 0.00 0.00 0.00 2.59
259 260 8.251721 CGTTCCTTCTCCTTTTCTTTCTATCTA 58.748 37.037 0.00 0.00 0.00 1.98
260 261 7.100409 CGTTCCTTCTCCTTTTCTTTCTATCT 58.900 38.462 0.00 0.00 0.00 1.98
261 262 6.314152 CCGTTCCTTCTCCTTTTCTTTCTATC 59.686 42.308 0.00 0.00 0.00 2.08
292 293 1.332904 CGCAACGAAAAGTGAGTCCAC 60.333 52.381 0.00 0.00 43.50 4.02
294 295 0.234884 CCGCAACGAAAAGTGAGTCC 59.765 55.000 0.00 0.00 0.00 3.85
305 311 0.452184 TGCTTTTGAAACCGCAACGA 59.548 45.000 0.00 0.00 0.00 3.85
351 357 2.280628 CCTTGTATCTTTGGGAGCGAC 58.719 52.381 0.00 0.00 0.00 5.19
354 360 2.808906 ACCCTTGTATCTTTGGGAGC 57.191 50.000 3.70 0.00 42.11 4.70
367 373 7.545615 GGAGAAAATAACTTGCATTAACCCTTG 59.454 37.037 0.00 0.00 0.00 3.61
445 451 3.673484 CGGCTGCCACCTTGGTTG 61.673 66.667 20.29 0.00 40.46 3.77
930 945 2.325661 AGGTTGGATTTCTTTGGGGG 57.674 50.000 0.00 0.00 0.00 5.40
931 946 2.760650 GCTAGGTTGGATTTCTTTGGGG 59.239 50.000 0.00 0.00 0.00 4.96
932 947 3.701664 AGCTAGGTTGGATTTCTTTGGG 58.298 45.455 0.00 0.00 0.00 4.12
933 948 4.619160 GCAAGCTAGGTTGGATTTCTTTGG 60.619 45.833 30.21 6.37 0.00 3.28
934 949 4.488879 GCAAGCTAGGTTGGATTTCTTTG 58.511 43.478 30.21 7.55 0.00 2.77
1059 1089 0.595588 CCCAGAGGAGATCGTCATCG 59.404 60.000 5.43 0.00 41.10 3.84
1321 1351 0.036732 TTCACAAGCTTGGCGATCCT 59.963 50.000 29.18 4.47 0.00 3.24
1323 1353 0.169009 GGTTCACAAGCTTGGCGATC 59.831 55.000 29.18 21.22 0.00 3.69
1324 1354 1.244019 GGGTTCACAAGCTTGGCGAT 61.244 55.000 29.18 6.43 0.00 4.58
1328 1358 0.670162 CACAGGGTTCACAAGCTTGG 59.330 55.000 29.18 18.09 39.90 3.61
1330 1360 0.106519 AGCACAGGGTTCACAAGCTT 60.107 50.000 0.00 0.00 0.00 3.74
1332 1362 1.845809 CGAGCACAGGGTTCACAAGC 61.846 60.000 0.00 0.00 0.00 4.01
1333 1363 1.230635 CCGAGCACAGGGTTCACAAG 61.231 60.000 0.00 0.00 0.00 3.16
1335 1365 2.425592 CCGAGCACAGGGTTCACA 59.574 61.111 0.00 0.00 0.00 3.58
1336 1366 2.358737 CCCGAGCACAGGGTTCAC 60.359 66.667 3.29 0.00 43.89 3.18
1365 1407 2.682136 TCCCCAATGAGGACGCGA 60.682 61.111 15.93 0.00 41.22 5.87
1422 1464 2.030412 ACACGACATTGCTCGCCA 59.970 55.556 0.00 0.00 37.15 5.69
1431 1473 4.388499 GGGACGGCCACACGACAT 62.388 66.667 11.00 0.00 37.61 3.06
1434 1476 3.552384 AAAGGGACGGCCACACGA 61.552 61.111 11.00 0.00 37.61 4.35
1497 1539 1.153647 CACGTGGCCTTGATCGCTA 60.154 57.895 7.95 0.00 0.00 4.26
1498 1540 2.434884 CACGTGGCCTTGATCGCT 60.435 61.111 7.95 0.00 0.00 4.93
1562 1604 1.924524 GTCCATCATCGTAACACCACG 59.075 52.381 0.00 0.00 43.28 4.94
1566 1608 2.601763 GGTTCGTCCATCATCGTAACAC 59.398 50.000 0.00 0.00 35.97 3.32
1571 1613 1.141019 CGGGTTCGTCCATCATCGT 59.859 57.895 2.42 0.00 38.11 3.73
1589 1631 1.732259 CCGAGGAGTAAACACATGCAC 59.268 52.381 0.00 0.00 0.00 4.57
1590 1632 1.621317 TCCGAGGAGTAAACACATGCA 59.379 47.619 0.00 0.00 0.00 3.96
1630 1672 2.684881 GTGGAAATGCCGTTGAGATGAT 59.315 45.455 0.00 0.00 40.66 2.45
1638 1680 1.025812 TGAAACGTGGAAATGCCGTT 58.974 45.000 0.00 0.00 45.76 4.44
1642 1684 2.736192 CCCAAATGAAACGTGGAAATGC 59.264 45.455 0.00 0.00 34.05 3.56
1658 1700 0.482446 AGACCAACCAGCATCCCAAA 59.518 50.000 0.00 0.00 0.00 3.28
1673 1715 0.755327 ACCAACAAGCAACCCAGACC 60.755 55.000 0.00 0.00 0.00 3.85
1681 1723 4.399004 AAAGTGCATTACCAACAAGCAA 57.601 36.364 0.00 0.00 36.91 3.91
1690 1732 4.794169 CACAACCAGTAAAGTGCATTACC 58.206 43.478 6.59 0.00 36.62 2.85
1721 1763 8.024865 TCAAATCAAACTCAAGTATGCAATCTG 58.975 33.333 0.00 0.00 0.00 2.90
1726 1768 8.939201 TTTTTCAAATCAAACTCAAGTATGCA 57.061 26.923 0.00 0.00 0.00 3.96
1743 1785 4.989279 AGCAAGACTCAGCTTTTTCAAA 57.011 36.364 0.00 0.00 38.01 2.69
1747 1789 5.942236 TGATGATAGCAAGACTCAGCTTTTT 59.058 36.000 7.57 0.00 42.05 1.94
1754 1796 2.481969 GCGGTGATGATAGCAAGACTCA 60.482 50.000 0.00 0.00 0.00 3.41
1786 1828 3.019564 GACAAGACCAGGATTCCATTGG 58.980 50.000 5.29 7.44 37.98 3.16
1831 1873 1.931172 CAATGCAGCAAAGCCAATAGC 59.069 47.619 0.00 0.00 44.25 2.97
1846 1888 0.676782 AAGCGTGGGTAGGACAATGC 60.677 55.000 0.00 0.00 0.00 3.56
1847 1889 1.369625 GAAGCGTGGGTAGGACAATG 58.630 55.000 0.00 0.00 0.00 2.82
1855 1897 1.529226 CACATTTGGAAGCGTGGGTA 58.471 50.000 0.00 0.00 0.00 3.69
1856 1898 2.340427 CACATTTGGAAGCGTGGGT 58.660 52.632 0.00 0.00 0.00 4.51
1887 1929 3.090790 TGTGGGAACATCATGACCATTG 58.909 45.455 0.00 0.00 46.14 2.82
1936 1978 6.988580 TGATGAGGTAGCTCAAGAATGTTATG 59.011 38.462 27.06 0.00 36.88 1.90
1937 1979 7.129457 TGATGAGGTAGCTCAAGAATGTTAT 57.871 36.000 27.06 8.56 36.88 1.89
1952 1994 8.956446 TGACCTTCTATCAATATGATGAGGTA 57.044 34.615 17.33 9.09 41.58 3.08
1958 2000 8.038862 ACCTGTTGACCTTCTATCAATATGAT 57.961 34.615 0.00 0.00 40.72 2.45
1974 2016 9.244292 TGAGAGTATCCATATATACCTGTTGAC 57.756 37.037 0.00 0.00 33.58 3.18
2016 2058 7.234577 ACATTGTTGGGTTCCACAAGTATAAAT 59.765 33.333 0.00 0.00 31.84 1.40
2023 2065 5.710099 AGTATACATTGTTGGGTTCCACAAG 59.290 40.000 5.50 0.00 31.84 3.16
2024 2066 5.636123 AGTATACATTGTTGGGTTCCACAA 58.364 37.500 5.50 0.00 30.78 3.33
2025 2067 5.249780 AGTATACATTGTTGGGTTCCACA 57.750 39.130 5.50 0.00 30.78 4.17
2026 2068 5.105917 CCAAGTATACATTGTTGGGTTCCAC 60.106 44.000 11.90 0.00 36.56 4.02
2037 2079 8.561738 ACCTAAGTTGAACCAAGTATACATTG 57.438 34.615 5.50 6.83 0.00 2.82
2040 2082 6.209192 TCGACCTAAGTTGAACCAAGTATACA 59.791 38.462 5.50 0.00 33.20 2.29
2041 2083 6.624423 TCGACCTAAGTTGAACCAAGTATAC 58.376 40.000 0.00 0.00 33.20 1.47
2042 2084 6.839124 TCGACCTAAGTTGAACCAAGTATA 57.161 37.500 0.00 0.00 33.20 1.47
2060 2102 3.265791 AGTCTCTTTGATTGCATCGACC 58.734 45.455 0.00 0.00 0.00 4.79
2090 2132 9.797642 AAGCATGGTATTTCATGATACAATCTA 57.202 29.630 0.00 0.00 45.30 1.98
2091 2133 8.701908 AAGCATGGTATTTCATGATACAATCT 57.298 30.769 0.00 1.49 45.30 2.40
2092 2134 9.403110 GAAAGCATGGTATTTCATGATACAATC 57.597 33.333 0.00 0.00 45.30 2.67
2095 2137 7.706159 GTGAAAGCATGGTATTTCATGATACA 58.294 34.615 13.51 4.52 44.65 2.29
2100 2142 5.163723 ACTCGTGAAAGCATGGTATTTCATG 60.164 40.000 18.96 18.96 46.57 3.07
2101 2143 4.943705 ACTCGTGAAAGCATGGTATTTCAT 59.056 37.500 13.51 0.00 44.65 2.57
2102 2144 4.323417 ACTCGTGAAAGCATGGTATTTCA 58.677 39.130 7.72 7.72 41.76 2.69
2106 2148 4.393062 CAGAAACTCGTGAAAGCATGGTAT 59.607 41.667 0.00 0.00 0.00 2.73
2129 2171 5.741011 TGGATGAGAAATTACCTGGTGTAC 58.259 41.667 10.23 0.00 0.00 2.90
2157 2199 8.936864 GGATTTGATTACTCCGACAATATAAGG 58.063 37.037 0.00 0.00 0.00 2.69
2158 2200 9.489084 TGGATTTGATTACTCCGACAATATAAG 57.511 33.333 0.00 0.00 31.36 1.73
2168 2210 8.076178 GGAACATAAATGGATTTGATTACTCCG 58.924 37.037 0.00 0.00 31.36 4.63
2169 2211 8.912988 TGGAACATAAATGGATTTGATTACTCC 58.087 33.333 0.00 0.00 0.00 3.85
2201 2243 8.315391 ACCACAATATAGATGATCGAACAATG 57.685 34.615 0.00 0.00 0.00 2.82
2228 2270 3.838244 AGGTTGTTAGTGACTTGCAGA 57.162 42.857 0.00 0.00 0.00 4.26
2229 2271 5.581085 GGTATAGGTTGTTAGTGACTTGCAG 59.419 44.000 0.00 0.00 0.00 4.41
2233 2275 9.263446 TGATTAGGTATAGGTTGTTAGTGACTT 57.737 33.333 0.00 0.00 0.00 3.01
2241 2283 9.975218 AGAATTGTTGATTAGGTATAGGTTGTT 57.025 29.630 0.00 0.00 0.00 2.83
2250 2292 8.856153 TTTGTAGCAGAATTGTTGATTAGGTA 57.144 30.769 0.00 0.00 0.00 3.08
2334 2382 6.212993 TCATTTGACATTTGATTTGGATCCCA 59.787 34.615 9.90 0.00 0.00 4.37
2336 2384 8.726870 ATTCATTTGACATTTGATTTGGATCC 57.273 30.769 4.20 4.20 0.00 3.36
2385 2433 3.811497 TGAGCTAGTCATTGCATGCATAC 59.189 43.478 23.37 19.13 0.00 2.39
2387 2435 2.927028 TGAGCTAGTCATTGCATGCAT 58.073 42.857 23.37 8.77 0.00 3.96
2397 2445 3.748048 GCTTCAAACACATGAGCTAGTCA 59.252 43.478 0.00 0.00 40.38 3.41
2456 2504 1.464687 GCATATTTGGCTAGCGATGCG 60.465 52.381 9.00 0.58 31.33 4.73
2502 2550 6.522054 ACCGTGGTTTCTATATATCAAGGTG 58.478 40.000 6.64 0.00 36.10 4.00
2530 2578 6.369340 TGCATTATTTTTGCTTGTGGATGAAG 59.631 34.615 0.00 0.00 40.77 3.02
2532 2580 5.791666 TGCATTATTTTTGCTTGTGGATGA 58.208 33.333 0.00 0.00 40.77 2.92
2533 2581 6.671614 ATGCATTATTTTTGCTTGTGGATG 57.328 33.333 0.00 0.00 40.77 3.51
2596 2644 6.252995 TGCTGATAAAAGATTAAGGTTGGGT 58.747 36.000 0.00 0.00 0.00 4.51
2633 2681 5.820423 TGTGGGGTCATACGATTCAAATTAG 59.180 40.000 0.00 0.00 0.00 1.73
2645 2694 5.353394 TCAGAGTAAATGTGGGGTCATAC 57.647 43.478 0.00 0.00 0.00 2.39
2665 2714 1.478916 TCGGACGCCTTACATGATTCA 59.521 47.619 0.00 0.00 0.00 2.57
2682 2731 2.905935 TAGTCCTCTTCCCCGCTCGG 62.906 65.000 0.48 0.48 0.00 4.63
2693 2742 6.882768 AGAATCATTTTGGAGTAGTCCTCT 57.117 37.500 17.62 6.54 44.30 3.69
2717 2766 1.340248 GGTGTCGACTTGTTCCTCTCA 59.660 52.381 17.92 0.00 0.00 3.27
2756 2805 2.048127 GGTCGGGTGCAGAGTGAC 60.048 66.667 0.00 0.00 0.00 3.67
2795 2844 1.441016 GCGCCAAGAAAGAGTTGCG 60.441 57.895 0.00 0.00 0.00 4.85
2835 2884 6.166279 GTGTAGAGAAATGATGGAGTTGTCA 58.834 40.000 0.00 0.00 0.00 3.58
2836 2885 5.582665 GGTGTAGAGAAATGATGGAGTTGTC 59.417 44.000 0.00 0.00 0.00 3.18
2851 2900 0.040646 ATGGTGTCCGGGTGTAGAGA 59.959 55.000 0.00 0.00 0.00 3.10
2861 2910 3.248043 AACATGTCCATGGTGTCCG 57.752 52.632 12.58 0.52 42.91 4.79
2905 2954 1.414866 TAGCACACACCCCTTCAGCA 61.415 55.000 0.00 0.00 0.00 4.41
2920 2969 9.249053 CATCTAGGAAGAATAGATTAGGTAGCA 57.751 37.037 0.00 0.00 37.79 3.49
2921 2970 8.194769 GCATCTAGGAAGAATAGATTAGGTAGC 58.805 40.741 0.00 0.00 37.79 3.58
2922 2971 9.249053 TGCATCTAGGAAGAATAGATTAGGTAG 57.751 37.037 0.00 0.00 37.79 3.18
2923 2972 9.601810 TTGCATCTAGGAAGAATAGATTAGGTA 57.398 33.333 0.00 0.00 37.79 3.08
2924 2973 8.497910 TTGCATCTAGGAAGAATAGATTAGGT 57.502 34.615 0.00 0.00 37.79 3.08
2956 3268 6.465439 TTAGTCCGTCATGTCATAATGTCT 57.535 37.500 0.00 0.00 0.00 3.41
3021 3336 2.715864 ATGCGTCTGTGCGTTGCAAC 62.716 55.000 19.89 19.89 41.47 4.17
3048 3363 8.361889 GGAACAGAGGGAGTATTATTCTACTTC 58.638 40.741 0.00 0.00 32.11 3.01
3051 3366 7.842887 AGGAACAGAGGGAGTATTATTCTAC 57.157 40.000 0.00 0.00 0.00 2.59
3110 3425 9.965824 CAATATGTCTATATGCATCCGTATGTA 57.034 33.333 0.19 0.00 35.38 2.29
3111 3426 7.439356 GCAATATGTCTATATGCATCCGTATGT 59.561 37.037 0.19 0.00 35.38 2.29
3112 3427 7.439056 TGCAATATGTCTATATGCATCCGTATG 59.561 37.037 0.19 0.00 32.97 2.39
3113 3428 7.500141 TGCAATATGTCTATATGCATCCGTAT 58.500 34.615 0.19 0.00 32.97 3.06
3114 3429 6.872920 TGCAATATGTCTATATGCATCCGTA 58.127 36.000 0.19 0.00 32.97 4.02
3115 3430 5.733676 TGCAATATGTCTATATGCATCCGT 58.266 37.500 0.19 0.00 32.97 4.69
3116 3431 6.667007 TTGCAATATGTCTATATGCATCCG 57.333 37.500 0.19 0.00 35.38 4.18
3117 3432 7.966753 CACTTTGCAATATGTCTATATGCATCC 59.033 37.037 0.19 0.00 35.38 3.51
3118 3433 8.509690 ACACTTTGCAATATGTCTATATGCATC 58.490 33.333 0.19 0.00 35.38 3.91
3119 3434 8.294577 CACACTTTGCAATATGTCTATATGCAT 58.705 33.333 11.98 3.79 35.38 3.96
3120 3435 7.641760 CACACTTTGCAATATGTCTATATGCA 58.358 34.615 11.98 0.00 34.50 3.96
3137 3452 6.148150 AGCAAATTGGATAAATGCACACTTTG 59.852 34.615 9.70 9.70 36.02 2.77
3138 3453 6.232692 AGCAAATTGGATAAATGCACACTTT 58.767 32.000 0.00 0.00 36.02 2.66
3139 3454 5.797051 AGCAAATTGGATAAATGCACACTT 58.203 33.333 0.00 0.00 36.02 3.16
3140 3455 5.410355 AGCAAATTGGATAAATGCACACT 57.590 34.783 0.00 0.00 36.02 3.55
3141 3456 5.220265 CGAAGCAAATTGGATAAATGCACAC 60.220 40.000 0.00 0.00 36.02 3.82
3142 3457 4.863689 CGAAGCAAATTGGATAAATGCACA 59.136 37.500 0.00 0.00 36.02 4.57
3143 3458 4.864247 ACGAAGCAAATTGGATAAATGCAC 59.136 37.500 0.00 0.00 36.02 4.57
3144 3459 5.070770 ACGAAGCAAATTGGATAAATGCA 57.929 34.783 0.00 0.00 36.02 3.96
3145 3460 6.697019 ACATACGAAGCAAATTGGATAAATGC 59.303 34.615 0.00 0.00 34.65 3.56
3146 3461 9.385902 CTACATACGAAGCAAATTGGATAAATG 57.614 33.333 0.00 0.00 0.00 2.32
3147 3462 9.120538 ACTACATACGAAGCAAATTGGATAAAT 57.879 29.630 0.00 0.00 0.00 1.40
3148 3463 8.500753 ACTACATACGAAGCAAATTGGATAAA 57.499 30.769 0.00 0.00 0.00 1.40
3149 3464 7.225931 GGACTACATACGAAGCAAATTGGATAA 59.774 37.037 0.00 0.00 0.00 1.75
3150 3465 6.704493 GGACTACATACGAAGCAAATTGGATA 59.296 38.462 0.00 0.00 0.00 2.59
3151 3466 5.527582 GGACTACATACGAAGCAAATTGGAT 59.472 40.000 0.00 0.00 0.00 3.41
3152 3467 4.873827 GGACTACATACGAAGCAAATTGGA 59.126 41.667 0.00 0.00 0.00 3.53
3153 3468 5.156804 GGACTACATACGAAGCAAATTGG 57.843 43.478 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.