Multiple sequence alignment - TraesCS3D01G008300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G008300 chr3D 100.000 2201 0 0 1 2201 2910825 2908625 0.000000e+00 4065.0
1 TraesCS3D01G008300 chrUn 86.458 1152 95 17 307 1405 32066730 32065587 0.000000e+00 1206.0
2 TraesCS3D01G008300 chr3B 86.499 874 83 16 1 864 2884263 2885111 0.000000e+00 928.0
3 TraesCS3D01G008300 chr3B 93.156 526 31 5 893 1417 2885356 2885877 0.000000e+00 767.0
4 TraesCS3D01G008300 chr3B 88.442 199 11 3 1519 1717 2886279 2886465 1.700000e-56 230.0
5 TraesCS3D01G008300 chr3B 86.290 124 6 1 1421 1533 2886127 2886250 8.250000e-25 124.0
6 TraesCS3D01G008300 chr5D 87.449 486 31 16 943 1417 529840966 529840500 1.160000e-147 532.0
7 TraesCS3D01G008300 chr6B 89.583 288 25 4 1918 2201 559527565 559527851 5.780000e-96 361.0
8 TraesCS3D01G008300 chr6A 91.724 145 11 1 2054 2198 161781718 161781861 1.330000e-47 200.0
9 TraesCS3D01G008300 chr6A 90.541 148 13 1 2054 2201 233956824 233956678 6.200000e-46 195.0
10 TraesCS3D01G008300 chr6A 90.541 148 13 1 2054 2201 299983524 299983378 6.200000e-46 195.0
11 TraesCS3D01G008300 chr7A 79.355 310 28 16 1923 2201 178042245 178041941 3.730000e-43 185.0
12 TraesCS3D01G008300 chr7A 81.955 133 21 3 1927 2057 689315633 689315502 2.310000e-20 110.0
13 TraesCS3D01G008300 chr1A 82.993 147 20 5 2057 2201 100289404 100289261 6.380000e-26 128.0
14 TraesCS3D01G008300 chr7D 81.884 138 18 4 1924 2057 596234157 596234023 2.310000e-20 110.0
15 TraesCS3D01G008300 chr2D 78.289 152 12 10 1993 2125 186801695 186801546 6.520000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G008300 chr3D 2908625 2910825 2200 True 4065.00 4065 100.00000 1 2201 1 chr3D.!!$R1 2200
1 TraesCS3D01G008300 chrUn 32065587 32066730 1143 True 1206.00 1206 86.45800 307 1405 1 chrUn.!!$R1 1098
2 TraesCS3D01G008300 chr3B 2884263 2886465 2202 False 512.25 928 88.59675 1 1717 4 chr3B.!!$F1 1716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.603707 ACATGACTTCCAGCACCGTG 60.604 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2465 0.038744 CACTGGTTGGAGATGCCCTT 59.961 55.0 0.0 0.0 34.97 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 5.065474 CGGTGAGTGTTAAAGGACAGAAAAA 59.935 40.000 0.00 0.00 0.00 1.94
88 89 9.724839 TTAAAGGACAGAAAAATGTAAAAGACG 57.275 29.630 0.00 0.00 32.25 4.18
105 106 0.952280 ACGACTGTGAGTCACATCGT 59.048 50.000 33.61 33.61 45.30 3.73
110 111 2.158957 ACTGTGAGTCACATCGTTTGGT 60.159 45.455 25.65 15.17 43.71 3.67
115 116 2.612212 GAGTCACATCGTTTGGTTGTGT 59.388 45.455 0.00 0.00 43.64 3.72
118 119 1.065401 CACATCGTTTGGTTGTGTGCT 59.935 47.619 0.00 0.00 40.11 4.40
138 139 1.021390 GGACATGACTTCCAGCACCG 61.021 60.000 0.00 0.00 32.82 4.94
140 141 0.603707 ACATGACTTCCAGCACCGTG 60.604 55.000 0.00 0.00 0.00 4.94
141 142 0.603707 CATGACTTCCAGCACCGTGT 60.604 55.000 0.00 0.00 0.00 4.49
149 150 0.796312 CCAGCACCGTGTGTAATGAC 59.204 55.000 0.00 0.00 35.75 3.06
170 171 2.755103 CCAGCTTTAACCCCAATCACTC 59.245 50.000 0.00 0.00 0.00 3.51
176 177 5.123979 GCTTTAACCCCAATCACTCTTACTG 59.876 44.000 0.00 0.00 0.00 2.74
191 192 6.038271 CACTCTTACTGCTGGTTTACTGTTTT 59.962 38.462 0.00 0.00 0.00 2.43
194 195 6.826741 TCTTACTGCTGGTTTACTGTTTTCTT 59.173 34.615 0.00 0.00 0.00 2.52
195 196 5.500645 ACTGCTGGTTTACTGTTTTCTTC 57.499 39.130 0.00 0.00 0.00 2.87
200 201 6.775629 TGCTGGTTTACTGTTTTCTTCCTTAT 59.224 34.615 0.00 0.00 0.00 1.73
202 203 8.789762 GCTGGTTTACTGTTTTCTTCCTTATAA 58.210 33.333 0.00 0.00 0.00 0.98
232 233 9.585369 TCATCATAATATTTGTAAAGGCCATCA 57.415 29.630 5.01 0.00 0.00 3.07
235 236 9.365906 TCATAATATTTGTAAAGGCCATCATGT 57.634 29.630 5.01 0.00 0.00 3.21
236 237 9.630098 CATAATATTTGTAAAGGCCATCATGTC 57.370 33.333 5.01 0.00 0.00 3.06
238 239 4.782019 TTTGTAAAGGCCATCATGTCAC 57.218 40.909 5.01 0.00 0.00 3.67
241 248 1.167851 AAAGGCCATCATGTCACGTG 58.832 50.000 9.94 9.94 0.00 4.49
249 256 4.245660 CCATCATGTCACGTGAGTTAACT 58.754 43.478 20.73 8.13 46.40 2.24
251 258 5.867174 CCATCATGTCACGTGAGTTAACTAA 59.133 40.000 20.73 0.00 46.40 2.24
254 261 9.083080 CATCATGTCACGTGAGTTAACTAATTA 57.917 33.333 20.73 0.00 46.40 1.40
279 286 7.876936 AGTCAATCAACATAGAATTCAGCAT 57.123 32.000 8.44 0.00 0.00 3.79
280 287 7.928103 AGTCAATCAACATAGAATTCAGCATC 58.072 34.615 8.44 0.00 0.00 3.91
281 288 7.555195 AGTCAATCAACATAGAATTCAGCATCA 59.445 33.333 8.44 0.00 0.00 3.07
282 289 8.186163 GTCAATCAACATAGAATTCAGCATCAA 58.814 33.333 8.44 0.00 0.00 2.57
283 290 8.741841 TCAATCAACATAGAATTCAGCATCAAA 58.258 29.630 8.44 0.00 0.00 2.69
284 291 8.804743 CAATCAACATAGAATTCAGCATCAAAC 58.195 33.333 8.44 0.00 0.00 2.93
285 292 6.855836 TCAACATAGAATTCAGCATCAAACC 58.144 36.000 8.44 0.00 0.00 3.27
286 293 6.660521 TCAACATAGAATTCAGCATCAAACCT 59.339 34.615 8.44 0.00 0.00 3.50
287 294 7.828717 TCAACATAGAATTCAGCATCAAACCTA 59.171 33.333 8.44 0.00 0.00 3.08
288 295 7.559590 ACATAGAATTCAGCATCAAACCTAC 57.440 36.000 8.44 0.00 0.00 3.18
289 296 7.112122 ACATAGAATTCAGCATCAAACCTACA 58.888 34.615 8.44 0.00 0.00 2.74
290 297 7.611467 ACATAGAATTCAGCATCAAACCTACAA 59.389 33.333 8.44 0.00 0.00 2.41
291 298 6.899393 AGAATTCAGCATCAAACCTACAAA 57.101 33.333 8.44 0.00 0.00 2.83
292 299 6.917533 AGAATTCAGCATCAAACCTACAAAG 58.082 36.000 8.44 0.00 0.00 2.77
293 300 4.503741 TTCAGCATCAAACCTACAAAGC 57.496 40.909 0.00 0.00 0.00 3.51
294 301 2.819608 TCAGCATCAAACCTACAAAGCC 59.180 45.455 0.00 0.00 0.00 4.35
305 312 6.759497 AACCTACAAAGCCTCATTTATGTC 57.241 37.500 0.00 0.00 0.00 3.06
372 382 6.707440 TCCATCTTCTCTAGTCTGTCATTC 57.293 41.667 0.00 0.00 0.00 2.67
420 430 4.202264 GCCTCTGCTACCTATGTGTTGTAT 60.202 45.833 0.00 0.00 33.53 2.29
422 432 6.295349 GCCTCTGCTACCTATGTGTTGTATAT 60.295 42.308 0.00 0.00 33.53 0.86
465 475 7.488471 CCAGTTTACGGTTTGTATCTTAGAGAG 59.512 40.741 0.00 0.00 31.81 3.20
471 481 5.460419 CGGTTTGTATCTTAGAGAGCATGAC 59.540 44.000 0.00 0.00 0.00 3.06
481 491 3.008330 AGAGAGCATGACTTGTGAATGC 58.992 45.455 0.00 8.94 45.62 3.56
492 502 3.209410 CTTGTGAATGCCATCCTCCTAC 58.791 50.000 0.00 0.00 0.00 3.18
580 590 6.851222 TTTTTATGATTTGAAGCCGCAAAA 57.149 29.167 5.78 0.00 40.72 2.44
601 611 1.303309 CCACCTGCGATCTGAATTCC 58.697 55.000 2.27 0.00 0.00 3.01
782 812 3.401033 TTGTTCGTCTGACACATGGAT 57.599 42.857 8.73 0.00 0.00 3.41
841 871 7.806180 ACCTAATGCTTGTAGTTATTCCTGAT 58.194 34.615 0.00 0.00 0.00 2.90
844 874 9.330063 CTAATGCTTGTAGTTATTCCTGATTGA 57.670 33.333 0.00 0.00 0.00 2.57
871 925 1.839424 AACCCAGCAGTTCATAAGCC 58.161 50.000 0.00 0.00 0.00 4.35
916 1162 3.906008 CGAGCAAAAACGTTATGTTCAGG 59.094 43.478 21.89 9.75 40.84 3.86
949 1196 4.970662 TGCAATGCTTCAGAATACCTTC 57.029 40.909 6.82 0.00 0.00 3.46
950 1197 3.374988 TGCAATGCTTCAGAATACCTTCG 59.625 43.478 6.82 0.00 36.45 3.79
951 1198 3.375299 GCAATGCTTCAGAATACCTTCGT 59.625 43.478 0.00 0.00 36.45 3.85
952 1199 4.728882 GCAATGCTTCAGAATACCTTCGTG 60.729 45.833 0.00 0.00 36.45 4.35
963 1210 6.090088 CAGAATACCTTCGTGAAACTTCTCTG 59.910 42.308 0.00 0.00 36.45 3.35
1072 1319 0.757188 CCCTACTCAGATCGGCCTGT 60.757 60.000 0.00 0.00 35.71 4.00
1251 1504 4.260620 GCTGTTGTTGTATTGTCTTGTCGT 60.261 41.667 0.00 0.00 0.00 4.34
1352 1609 8.700722 TGCCTTAACATTTATGCTTATGTTTG 57.299 30.769 5.86 1.40 40.97 2.93
1377 1634 2.552599 TTGACATGGAGTTTGCGGTA 57.447 45.000 0.00 0.00 0.00 4.02
1417 1674 8.481314 TGTTCTCTTCTGCTCAGATAAACATAT 58.519 33.333 0.00 0.00 37.29 1.78
1459 1962 8.150945 TCTGAAGCTAGTGTTTCTCTTGTATTT 58.849 33.333 0.00 0.00 34.99 1.40
1462 1965 7.440523 AGCTAGTGTTTCTCTTGTATTTTGG 57.559 36.000 0.00 0.00 0.00 3.28
1542 2099 8.962884 AAAAATTCTTAGCACCAAGTTTTGAT 57.037 26.923 0.00 0.00 0.00 2.57
1562 2119 2.523245 TCAACATTGGCCATGCTGTAA 58.477 42.857 6.09 0.65 36.14 2.41
1564 2121 2.995258 CAACATTGGCCATGCTGTAAAC 59.005 45.455 6.09 0.00 36.14 2.01
1571 2128 2.094545 GGCCATGCTGTAAACCTGAAAG 60.095 50.000 0.00 0.00 0.00 2.62
1595 2152 8.385898 AGTGTTCCTCGATAGTTATAGAGAAG 57.614 38.462 9.87 0.00 37.55 2.85
1597 2154 8.623030 GTGTTCCTCGATAGTTATAGAGAAGTT 58.377 37.037 9.87 0.00 37.55 2.66
1598 2155 9.186837 TGTTCCTCGATAGTTATAGAGAAGTTT 57.813 33.333 9.87 0.00 37.55 2.66
1624 2181 6.183360 CGGGTCAATTTGTAAGCAAAAACAAA 60.183 34.615 3.40 3.40 46.23 2.83
1660 2217 2.238245 GCAAGAACTGCGATGAAGTG 57.762 50.000 0.00 0.00 42.37 3.16
1669 2226 4.820897 ACTGCGATGAAGTGATGAAGTAA 58.179 39.130 0.00 0.00 0.00 2.24
1680 2237 4.406972 AGTGATGAAGTAAGCTATGCCTCA 59.593 41.667 0.00 0.00 0.00 3.86
1717 2274 1.071385 CAGAGGACCTTGTGCAGAAGT 59.929 52.381 20.95 10.09 0.00 3.01
1718 2275 2.300152 CAGAGGACCTTGTGCAGAAGTA 59.700 50.000 20.95 0.00 0.00 2.24
1719 2276 3.055530 CAGAGGACCTTGTGCAGAAGTAT 60.056 47.826 20.95 9.76 0.00 2.12
1720 2277 3.584848 AGAGGACCTTGTGCAGAAGTATT 59.415 43.478 20.95 6.13 0.00 1.89
1721 2278 4.042187 AGAGGACCTTGTGCAGAAGTATTT 59.958 41.667 20.95 5.40 0.00 1.40
1722 2279 4.074970 AGGACCTTGTGCAGAAGTATTTG 58.925 43.478 20.95 8.74 0.00 2.32
1723 2280 3.821033 GGACCTTGTGCAGAAGTATTTGT 59.179 43.478 20.95 11.75 0.00 2.83
1724 2281 4.278419 GGACCTTGTGCAGAAGTATTTGTT 59.722 41.667 20.95 0.00 0.00 2.83
1725 2282 5.221244 GGACCTTGTGCAGAAGTATTTGTTT 60.221 40.000 20.95 0.00 0.00 2.83
1726 2283 5.591099 ACCTTGTGCAGAAGTATTTGTTTG 58.409 37.500 20.95 6.09 0.00 2.93
1727 2284 4.445385 CCTTGTGCAGAAGTATTTGTTTGC 59.555 41.667 20.95 0.00 0.00 3.68
1728 2285 3.626977 TGTGCAGAAGTATTTGTTTGCG 58.373 40.909 0.00 0.00 34.44 4.85
1729 2286 2.979813 GTGCAGAAGTATTTGTTTGCGG 59.020 45.455 0.00 0.00 34.44 5.69
1730 2287 1.985684 GCAGAAGTATTTGTTTGCGGC 59.014 47.619 0.00 0.00 0.00 6.53
1731 2288 2.351738 GCAGAAGTATTTGTTTGCGGCT 60.352 45.455 0.00 0.00 0.00 5.52
1732 2289 3.492313 CAGAAGTATTTGTTTGCGGCTC 58.508 45.455 0.00 0.00 0.00 4.70
1733 2290 2.488153 AGAAGTATTTGTTTGCGGCTCC 59.512 45.455 0.00 0.00 0.00 4.70
1734 2291 0.802494 AGTATTTGTTTGCGGCTCCG 59.198 50.000 3.56 3.56 43.09 4.63
1735 2292 0.519961 GTATTTGTTTGCGGCTCCGT 59.480 50.000 10.24 0.00 42.09 4.69
1736 2293 1.733360 GTATTTGTTTGCGGCTCCGTA 59.267 47.619 10.24 2.15 42.09 4.02
1737 2294 0.519961 ATTTGTTTGCGGCTCCGTAC 59.480 50.000 10.24 6.77 42.09 3.67
1738 2295 0.814410 TTTGTTTGCGGCTCCGTACA 60.814 50.000 10.24 9.07 42.09 2.90
1739 2296 0.814410 TTGTTTGCGGCTCCGTACAA 60.814 50.000 10.24 13.79 42.09 2.41
1740 2297 1.205820 GTTTGCGGCTCCGTACAAC 59.794 57.895 10.24 8.83 42.09 3.32
1741 2298 1.070105 TTTGCGGCTCCGTACAACT 59.930 52.632 10.24 0.00 42.09 3.16
1742 2299 0.317799 TTTGCGGCTCCGTACAACTA 59.682 50.000 10.24 0.00 42.09 2.24
1743 2300 0.533491 TTGCGGCTCCGTACAACTAT 59.467 50.000 10.24 0.00 42.09 2.12
1744 2301 1.391577 TGCGGCTCCGTACAACTATA 58.608 50.000 10.24 0.00 42.09 1.31
1745 2302 1.335810 TGCGGCTCCGTACAACTATAG 59.664 52.381 10.24 0.00 42.09 1.31
1746 2303 1.335689 GCGGCTCCGTACAACTATAGG 60.336 57.143 10.24 0.00 42.09 2.57
1747 2304 2.224606 CGGCTCCGTACAACTATAGGA 58.775 52.381 4.43 0.00 34.35 2.94
1748 2305 2.620115 CGGCTCCGTACAACTATAGGAA 59.380 50.000 4.43 0.00 34.35 3.36
1749 2306 3.067180 CGGCTCCGTACAACTATAGGAAA 59.933 47.826 4.43 0.00 34.35 3.13
1750 2307 4.261909 CGGCTCCGTACAACTATAGGAAAT 60.262 45.833 4.43 0.00 34.35 2.17
1751 2308 5.608449 GGCTCCGTACAACTATAGGAAATT 58.392 41.667 4.43 0.00 0.00 1.82
1752 2309 5.695363 GGCTCCGTACAACTATAGGAAATTC 59.305 44.000 4.43 0.00 0.00 2.17
1753 2310 5.695363 GCTCCGTACAACTATAGGAAATTCC 59.305 44.000 3.29 3.29 36.58 3.01
1754 2311 6.684613 GCTCCGTACAACTATAGGAAATTCCA 60.685 42.308 15.21 0.69 39.61 3.53
1755 2312 7.369551 TCCGTACAACTATAGGAAATTCCAT 57.630 36.000 15.21 8.26 39.61 3.41
1756 2313 7.214381 TCCGTACAACTATAGGAAATTCCATG 58.786 38.462 15.21 5.75 39.61 3.66
1757 2314 6.426937 CCGTACAACTATAGGAAATTCCATGG 59.573 42.308 15.21 4.97 39.61 3.66
1758 2315 6.073222 CGTACAACTATAGGAAATTCCATGGC 60.073 42.308 15.21 0.00 39.61 4.40
1759 2316 6.018433 ACAACTATAGGAAATTCCATGGCT 57.982 37.500 15.21 0.00 39.61 4.75
1760 2317 7.149202 ACAACTATAGGAAATTCCATGGCTA 57.851 36.000 15.21 1.60 39.61 3.93
1761 2318 6.998673 ACAACTATAGGAAATTCCATGGCTAC 59.001 38.462 15.21 0.00 39.61 3.58
1762 2319 6.763715 ACTATAGGAAATTCCATGGCTACA 57.236 37.500 15.21 0.00 39.61 2.74
1763 2320 6.773638 ACTATAGGAAATTCCATGGCTACAG 58.226 40.000 15.21 2.73 39.61 2.74
1764 2321 2.659428 AGGAAATTCCATGGCTACAGC 58.341 47.619 15.21 0.00 39.61 4.40
1765 2322 2.243221 AGGAAATTCCATGGCTACAGCT 59.757 45.455 15.21 0.00 39.61 4.24
1766 2323 3.026694 GGAAATTCCATGGCTACAGCTT 58.973 45.455 6.96 0.00 37.60 3.74
1767 2324 3.448660 GGAAATTCCATGGCTACAGCTTT 59.551 43.478 6.96 0.00 37.60 3.51
1768 2325 4.081476 GGAAATTCCATGGCTACAGCTTTT 60.081 41.667 6.96 0.00 37.60 2.27
1769 2326 4.460948 AATTCCATGGCTACAGCTTTTG 57.539 40.909 6.96 0.00 41.70 2.44
1770 2327 2.877097 TCCATGGCTACAGCTTTTGA 57.123 45.000 6.96 0.00 41.70 2.69
1771 2328 2.715046 TCCATGGCTACAGCTTTTGAG 58.285 47.619 6.96 0.00 41.70 3.02
1772 2329 1.133790 CCATGGCTACAGCTTTTGAGC 59.866 52.381 0.00 0.00 41.70 4.26
1773 2330 1.814394 CATGGCTACAGCTTTTGAGCA 59.186 47.619 0.54 0.00 41.70 4.26
1774 2331 2.205022 TGGCTACAGCTTTTGAGCAT 57.795 45.000 0.54 0.00 41.70 3.79
1775 2332 1.814394 TGGCTACAGCTTTTGAGCATG 59.186 47.619 0.54 0.00 41.70 4.06
1776 2333 1.815003 GGCTACAGCTTTTGAGCATGT 59.185 47.619 0.54 5.27 41.70 3.21
1777 2334 3.009723 GGCTACAGCTTTTGAGCATGTA 58.990 45.455 0.54 6.03 41.70 2.29
1778 2335 3.181506 GGCTACAGCTTTTGAGCATGTAC 60.182 47.826 0.54 0.00 41.70 2.90
1779 2336 3.181506 GCTACAGCTTTTGAGCATGTACC 60.182 47.826 0.88 0.00 38.21 3.34
1780 2337 2.862541 ACAGCTTTTGAGCATGTACCA 58.137 42.857 0.88 0.00 37.25 3.25
1781 2338 3.424703 ACAGCTTTTGAGCATGTACCAT 58.575 40.909 0.88 0.00 37.25 3.55
1782 2339 4.588899 ACAGCTTTTGAGCATGTACCATA 58.411 39.130 0.88 0.00 37.25 2.74
1783 2340 5.009631 ACAGCTTTTGAGCATGTACCATAA 58.990 37.500 0.88 0.00 37.25 1.90
1784 2341 5.476599 ACAGCTTTTGAGCATGTACCATAAA 59.523 36.000 0.88 0.00 37.25 1.40
1785 2342 6.015519 ACAGCTTTTGAGCATGTACCATAAAA 60.016 34.615 0.88 0.00 37.25 1.52
1786 2343 6.867816 CAGCTTTTGAGCATGTACCATAAAAA 59.132 34.615 0.88 0.00 37.25 1.94
1808 2365 5.373981 AAAAATACGTTGTTAATGGGCGA 57.626 34.783 0.00 0.00 0.00 5.54
1809 2366 5.570234 AAAATACGTTGTTAATGGGCGAT 57.430 34.783 0.00 0.00 0.00 4.58
1810 2367 4.806342 AATACGTTGTTAATGGGCGATC 57.194 40.909 0.00 0.00 0.00 3.69
1811 2368 2.396590 ACGTTGTTAATGGGCGATCT 57.603 45.000 0.00 0.00 0.00 2.75
1812 2369 2.006888 ACGTTGTTAATGGGCGATCTG 58.993 47.619 0.00 0.00 0.00 2.90
1813 2370 1.268032 CGTTGTTAATGGGCGATCTGC 60.268 52.381 0.00 1.55 45.38 4.26
1824 2381 2.253392 GCGATCTGCCAAGAAACTTG 57.747 50.000 4.73 4.73 35.59 3.16
1825 2382 1.135575 GCGATCTGCCAAGAAACTTGG 60.136 52.381 21.66 21.66 42.37 3.61
1826 2383 2.154462 CGATCTGCCAAGAAACTTGGT 58.846 47.619 24.90 10.59 41.53 3.67
1827 2384 2.554032 CGATCTGCCAAGAAACTTGGTT 59.446 45.455 24.90 12.28 41.53 3.67
1828 2385 3.610114 CGATCTGCCAAGAAACTTGGTTG 60.610 47.826 24.90 18.92 41.53 3.77
1829 2386 3.011566 TCTGCCAAGAAACTTGGTTGA 57.988 42.857 24.90 20.34 41.53 3.18
1830 2387 2.951642 TCTGCCAAGAAACTTGGTTGAG 59.048 45.455 24.90 19.07 41.53 3.02
1831 2388 1.408702 TGCCAAGAAACTTGGTTGAGC 59.591 47.619 24.90 14.32 41.53 4.26
1832 2389 1.683385 GCCAAGAAACTTGGTTGAGCT 59.317 47.619 24.90 0.00 41.53 4.09
1833 2390 2.544486 GCCAAGAAACTTGGTTGAGCTG 60.544 50.000 24.90 4.70 41.53 4.24
1834 2391 2.035066 CCAAGAAACTTGGTTGAGCTGG 59.965 50.000 18.81 0.00 34.92 4.85
1835 2392 2.689983 CAAGAAACTTGGTTGAGCTGGT 59.310 45.455 0.00 0.00 0.00 4.00
1836 2393 2.301346 AGAAACTTGGTTGAGCTGGTG 58.699 47.619 0.00 0.00 0.00 4.17
1837 2394 1.338020 GAAACTTGGTTGAGCTGGTGG 59.662 52.381 0.00 0.00 0.00 4.61
1838 2395 1.109323 AACTTGGTTGAGCTGGTGGC 61.109 55.000 0.00 0.00 42.19 5.01
1839 2396 1.529010 CTTGGTTGAGCTGGTGGCA 60.529 57.895 0.00 0.00 44.79 4.92
1840 2397 0.896940 CTTGGTTGAGCTGGTGGCAT 60.897 55.000 0.00 0.00 44.79 4.40
1841 2398 1.180456 TTGGTTGAGCTGGTGGCATG 61.180 55.000 0.00 0.00 44.79 4.06
1842 2399 1.303561 GGTTGAGCTGGTGGCATGA 60.304 57.895 0.00 0.00 44.79 3.07
1843 2400 1.589716 GGTTGAGCTGGTGGCATGAC 61.590 60.000 0.00 0.00 44.79 3.06
1844 2401 0.890542 GTTGAGCTGGTGGCATGACA 60.891 55.000 0.00 0.00 44.79 3.58
1845 2402 0.607217 TTGAGCTGGTGGCATGACAG 60.607 55.000 0.00 11.06 44.79 3.51
1846 2403 1.297689 GAGCTGGTGGCATGACAGA 59.702 57.895 0.00 0.00 44.79 3.41
1847 2404 0.107312 GAGCTGGTGGCATGACAGAT 60.107 55.000 0.00 12.58 44.79 2.90
1848 2405 1.139654 GAGCTGGTGGCATGACAGATA 59.860 52.381 0.00 0.00 44.79 1.98
1849 2406 1.561076 AGCTGGTGGCATGACAGATAA 59.439 47.619 0.00 0.00 44.79 1.75
1850 2407 1.945394 GCTGGTGGCATGACAGATAAG 59.055 52.381 0.00 0.00 41.35 1.73
1851 2408 2.681976 GCTGGTGGCATGACAGATAAGT 60.682 50.000 0.00 0.00 41.35 2.24
1852 2409 3.201290 CTGGTGGCATGACAGATAAGTC 58.799 50.000 0.00 0.00 38.99 3.01
1853 2410 2.840038 TGGTGGCATGACAGATAAGTCT 59.160 45.455 0.00 0.00 39.27 3.24
1854 2411 3.264193 TGGTGGCATGACAGATAAGTCTT 59.736 43.478 0.00 0.00 39.27 3.01
1855 2412 4.263462 TGGTGGCATGACAGATAAGTCTTT 60.263 41.667 0.00 0.00 39.27 2.52
1856 2413 4.095483 GGTGGCATGACAGATAAGTCTTTG 59.905 45.833 0.00 0.00 39.27 2.77
1857 2414 4.697352 GTGGCATGACAGATAAGTCTTTGT 59.303 41.667 0.00 0.00 39.27 2.83
1858 2415 5.182001 GTGGCATGACAGATAAGTCTTTGTT 59.818 40.000 0.00 0.00 39.27 2.83
1859 2416 6.371548 GTGGCATGACAGATAAGTCTTTGTTA 59.628 38.462 0.00 0.00 39.27 2.41
1860 2417 7.066284 GTGGCATGACAGATAAGTCTTTGTTAT 59.934 37.037 0.00 0.00 39.27 1.89
1861 2418 7.066163 TGGCATGACAGATAAGTCTTTGTTATG 59.934 37.037 0.00 12.83 39.27 1.90
1862 2419 7.066284 GGCATGACAGATAAGTCTTTGTTATGT 59.934 37.037 16.15 6.31 39.27 2.29
1863 2420 8.119226 GCATGACAGATAAGTCTTTGTTATGTC 58.881 37.037 16.15 12.72 39.27 3.06
1864 2421 7.812309 TGACAGATAAGTCTTTGTTATGTCG 57.188 36.000 0.00 0.00 39.27 4.35
1865 2422 7.599171 TGACAGATAAGTCTTTGTTATGTCGA 58.401 34.615 0.00 0.00 39.27 4.20
1866 2423 8.251026 TGACAGATAAGTCTTTGTTATGTCGAT 58.749 33.333 0.00 0.00 39.27 3.59
1867 2424 9.088512 GACAGATAAGTCTTTGTTATGTCGATT 57.911 33.333 0.00 0.00 35.65 3.34
1868 2425 8.873830 ACAGATAAGTCTTTGTTATGTCGATTG 58.126 33.333 0.00 0.00 30.42 2.67
1869 2426 7.848051 CAGATAAGTCTTTGTTATGTCGATTGC 59.152 37.037 0.00 0.00 30.42 3.56
1870 2427 7.766278 AGATAAGTCTTTGTTATGTCGATTGCT 59.234 33.333 0.00 0.00 0.00 3.91
1871 2428 6.560253 AAGTCTTTGTTATGTCGATTGCTT 57.440 33.333 0.00 0.00 0.00 3.91
1872 2429 7.667043 AAGTCTTTGTTATGTCGATTGCTTA 57.333 32.000 0.00 0.00 0.00 3.09
1873 2430 7.667043 AGTCTTTGTTATGTCGATTGCTTAA 57.333 32.000 0.00 0.00 0.00 1.85
1874 2431 8.094798 AGTCTTTGTTATGTCGATTGCTTAAA 57.905 30.769 0.00 0.00 0.00 1.52
1875 2432 8.230486 AGTCTTTGTTATGTCGATTGCTTAAAG 58.770 33.333 0.00 0.00 0.00 1.85
1876 2433 8.015658 GTCTTTGTTATGTCGATTGCTTAAAGT 58.984 33.333 0.00 0.00 0.00 2.66
1877 2434 9.210329 TCTTTGTTATGTCGATTGCTTAAAGTA 57.790 29.630 0.00 0.00 0.00 2.24
1878 2435 9.988350 CTTTGTTATGTCGATTGCTTAAAGTAT 57.012 29.630 0.00 0.00 0.00 2.12
1885 2442 9.640963 ATGTCGATTGCTTAAAGTATATCTACC 57.359 33.333 0.00 0.00 0.00 3.18
1886 2443 8.086522 TGTCGATTGCTTAAAGTATATCTACCC 58.913 37.037 0.00 0.00 0.00 3.69
1887 2444 8.305317 GTCGATTGCTTAAAGTATATCTACCCT 58.695 37.037 0.00 0.00 0.00 4.34
1888 2445 8.867097 TCGATTGCTTAAAGTATATCTACCCTT 58.133 33.333 0.00 0.00 0.00 3.95
1889 2446 9.141400 CGATTGCTTAAAGTATATCTACCCTTC 57.859 37.037 0.00 0.00 0.00 3.46
1890 2447 9.438228 GATTGCTTAAAGTATATCTACCCTTCC 57.562 37.037 0.00 0.00 0.00 3.46
1891 2448 7.924358 TGCTTAAAGTATATCTACCCTTCCA 57.076 36.000 0.00 0.00 0.00 3.53
1892 2449 8.506196 TGCTTAAAGTATATCTACCCTTCCAT 57.494 34.615 0.00 0.00 0.00 3.41
1893 2450 8.375506 TGCTTAAAGTATATCTACCCTTCCATG 58.624 37.037 0.00 0.00 0.00 3.66
1894 2451 8.594550 GCTTAAAGTATATCTACCCTTCCATGA 58.405 37.037 0.00 0.00 0.00 3.07
1896 2453 9.670442 TTAAAGTATATCTACCCTTCCATGAGT 57.330 33.333 0.00 0.00 0.00 3.41
1897 2454 8.568617 AAAGTATATCTACCCTTCCATGAGTT 57.431 34.615 0.00 0.00 0.00 3.01
1898 2455 7.546250 AGTATATCTACCCTTCCATGAGTTG 57.454 40.000 0.00 0.00 0.00 3.16
1899 2456 7.076446 AGTATATCTACCCTTCCATGAGTTGT 58.924 38.462 0.00 0.00 0.00 3.32
1900 2457 6.831664 ATATCTACCCTTCCATGAGTTGTT 57.168 37.500 0.00 0.00 0.00 2.83
1901 2458 4.286297 TCTACCCTTCCATGAGTTGTTG 57.714 45.455 0.00 0.00 0.00 3.33
1902 2459 3.650942 TCTACCCTTCCATGAGTTGTTGT 59.349 43.478 0.00 0.00 0.00 3.32
1903 2460 2.863809 ACCCTTCCATGAGTTGTTGTC 58.136 47.619 0.00 0.00 0.00 3.18
1904 2461 2.174639 ACCCTTCCATGAGTTGTTGTCA 59.825 45.455 0.00 0.00 0.00 3.58
1905 2462 3.221771 CCCTTCCATGAGTTGTTGTCAA 58.778 45.455 0.00 0.00 0.00 3.18
1906 2463 3.828451 CCCTTCCATGAGTTGTTGTCAAT 59.172 43.478 0.00 0.00 35.92 2.57
1907 2464 4.281688 CCCTTCCATGAGTTGTTGTCAATT 59.718 41.667 0.00 0.00 35.92 2.32
1908 2465 5.476599 CCCTTCCATGAGTTGTTGTCAATTA 59.523 40.000 0.00 0.00 35.92 1.40
1909 2466 6.015519 CCCTTCCATGAGTTGTTGTCAATTAA 60.016 38.462 0.00 0.00 35.92 1.40
1910 2467 7.086376 CCTTCCATGAGTTGTTGTCAATTAAG 58.914 38.462 0.00 0.00 35.92 1.85
1911 2468 6.573664 TCCATGAGTTGTTGTCAATTAAGG 57.426 37.500 0.00 0.00 35.92 2.69
1912 2469 5.476599 TCCATGAGTTGTTGTCAATTAAGGG 59.523 40.000 0.00 0.00 35.92 3.95
1913 2470 4.846779 TGAGTTGTTGTCAATTAAGGGC 57.153 40.909 0.00 0.00 35.92 5.19
1914 2471 4.211125 TGAGTTGTTGTCAATTAAGGGCA 58.789 39.130 0.00 0.00 35.92 5.36
1915 2472 4.832266 TGAGTTGTTGTCAATTAAGGGCAT 59.168 37.500 0.00 0.00 35.92 4.40
1916 2473 5.048083 TGAGTTGTTGTCAATTAAGGGCATC 60.048 40.000 0.00 0.00 35.92 3.91
1917 2474 5.079643 AGTTGTTGTCAATTAAGGGCATCT 58.920 37.500 0.00 0.00 35.92 2.90
1918 2475 5.183904 AGTTGTTGTCAATTAAGGGCATCTC 59.816 40.000 0.00 0.00 35.92 2.75
1919 2476 4.016444 TGTTGTCAATTAAGGGCATCTCC 58.984 43.478 0.00 0.00 0.00 3.71
1920 2477 4.016444 GTTGTCAATTAAGGGCATCTCCA 58.984 43.478 0.00 0.00 36.21 3.86
1921 2478 4.314522 TGTCAATTAAGGGCATCTCCAA 57.685 40.909 0.00 0.00 36.21 3.53
1922 2479 4.016444 TGTCAATTAAGGGCATCTCCAAC 58.984 43.478 0.00 0.00 36.21 3.77
1923 2480 3.381590 GTCAATTAAGGGCATCTCCAACC 59.618 47.826 0.00 0.00 36.21 3.77
1924 2481 3.011144 TCAATTAAGGGCATCTCCAACCA 59.989 43.478 0.00 0.00 36.21 3.67
1925 2482 2.806945 TTAAGGGCATCTCCAACCAG 57.193 50.000 0.00 0.00 36.21 4.00
1926 2483 1.668826 TAAGGGCATCTCCAACCAGT 58.331 50.000 0.00 0.00 36.21 4.00
1927 2484 0.038744 AAGGGCATCTCCAACCAGTG 59.961 55.000 0.00 0.00 36.21 3.66
1932 2489 0.321564 CATCTCCAACCAGTGGCGAA 60.322 55.000 9.78 0.00 44.32 4.70
1933 2490 0.620556 ATCTCCAACCAGTGGCGAAT 59.379 50.000 9.78 0.00 44.32 3.34
1934 2491 1.407437 ATCTCCAACCAGTGGCGAATC 60.407 52.381 9.78 0.00 44.32 2.52
1935 2492 3.748631 ATCTCCAACCAGTGGCGAATCT 61.749 50.000 9.78 0.00 44.32 2.40
1936 2493 3.853104 CCAACCAGTGGCGAATCTA 57.147 52.632 9.78 0.00 41.72 1.98
1937 2494 1.656652 CCAACCAGTGGCGAATCTAG 58.343 55.000 9.78 0.00 41.72 2.43
1938 2495 1.656652 CAACCAGTGGCGAATCTAGG 58.343 55.000 9.78 0.00 0.00 3.02
1939 2496 1.207089 CAACCAGTGGCGAATCTAGGA 59.793 52.381 9.78 0.00 0.00 2.94
1940 2497 1.115467 ACCAGTGGCGAATCTAGGAG 58.885 55.000 9.78 0.00 0.00 3.69
1941 2498 0.390860 CCAGTGGCGAATCTAGGAGG 59.609 60.000 0.00 0.00 0.00 4.30
1942 2499 1.403814 CAGTGGCGAATCTAGGAGGA 58.596 55.000 0.00 0.00 0.00 3.71
1943 2500 1.757118 CAGTGGCGAATCTAGGAGGAA 59.243 52.381 0.00 0.00 0.00 3.36
1944 2501 2.168521 CAGTGGCGAATCTAGGAGGAAA 59.831 50.000 0.00 0.00 0.00 3.13
1945 2502 2.432510 AGTGGCGAATCTAGGAGGAAAG 59.567 50.000 0.00 0.00 0.00 2.62
1946 2503 1.139058 TGGCGAATCTAGGAGGAAAGC 59.861 52.381 0.00 0.00 0.00 3.51
1947 2504 1.492720 GCGAATCTAGGAGGAAAGCG 58.507 55.000 0.00 0.00 0.00 4.68
1948 2505 1.067212 GCGAATCTAGGAGGAAAGCGA 59.933 52.381 0.00 0.00 0.00 4.93
1949 2506 2.481449 GCGAATCTAGGAGGAAAGCGAA 60.481 50.000 0.00 0.00 0.00 4.70
1950 2507 3.376540 CGAATCTAGGAGGAAAGCGAAG 58.623 50.000 0.00 0.00 0.00 3.79
1951 2508 3.723260 GAATCTAGGAGGAAAGCGAAGG 58.277 50.000 0.00 0.00 0.00 3.46
1952 2509 1.486211 TCTAGGAGGAAAGCGAAGGG 58.514 55.000 0.00 0.00 0.00 3.95
1953 2510 1.196012 CTAGGAGGAAAGCGAAGGGT 58.804 55.000 0.00 0.00 0.00 4.34
1954 2511 0.902531 TAGGAGGAAAGCGAAGGGTG 59.097 55.000 0.00 0.00 0.00 4.61
1955 2512 1.377333 GGAGGAAAGCGAAGGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
1956 2513 1.377333 GAGGAAAGCGAAGGGTGGG 60.377 63.158 0.00 0.00 0.00 4.61
1957 2514 3.062466 GGAAAGCGAAGGGTGGGC 61.062 66.667 0.00 0.00 0.00 5.36
1958 2515 2.034221 GAAAGCGAAGGGTGGGCT 59.966 61.111 0.00 0.00 39.01 5.19
1959 2516 2.034221 AAAGCGAAGGGTGGGCTC 59.966 61.111 0.00 0.00 35.64 4.70
1960 2517 2.748058 GAAAGCGAAGGGTGGGCTCA 62.748 60.000 0.00 0.00 35.64 4.26
1961 2518 2.351924 AAAGCGAAGGGTGGGCTCAA 62.352 55.000 0.00 0.00 35.64 3.02
1962 2519 2.044946 GCGAAGGGTGGGCTCAAT 60.045 61.111 0.00 0.00 0.00 2.57
1963 2520 1.678970 GCGAAGGGTGGGCTCAATT 60.679 57.895 0.00 0.00 0.00 2.32
1964 2521 1.250840 GCGAAGGGTGGGCTCAATTT 61.251 55.000 0.00 0.00 0.00 1.82
1965 2522 1.953311 GCGAAGGGTGGGCTCAATTTA 60.953 52.381 0.00 0.00 0.00 1.40
1966 2523 2.442413 CGAAGGGTGGGCTCAATTTAA 58.558 47.619 0.00 0.00 0.00 1.52
1967 2524 2.163613 CGAAGGGTGGGCTCAATTTAAC 59.836 50.000 0.00 0.00 0.00 2.01
1968 2525 2.990740 AGGGTGGGCTCAATTTAACA 57.009 45.000 0.00 0.00 0.00 2.41
1969 2526 2.807676 AGGGTGGGCTCAATTTAACAG 58.192 47.619 0.00 0.00 0.00 3.16
1970 2527 1.204704 GGGTGGGCTCAATTTAACAGC 59.795 52.381 0.00 0.00 0.00 4.40
1971 2528 1.135402 GGTGGGCTCAATTTAACAGCG 60.135 52.381 0.00 0.00 33.66 5.18
1972 2529 1.810151 GTGGGCTCAATTTAACAGCGA 59.190 47.619 0.00 0.00 33.66 4.93
1973 2530 2.083774 TGGGCTCAATTTAACAGCGAG 58.916 47.619 0.00 0.00 33.66 5.03
1974 2531 2.290008 TGGGCTCAATTTAACAGCGAGA 60.290 45.455 0.00 0.00 33.66 4.04
1975 2532 2.747446 GGGCTCAATTTAACAGCGAGAA 59.253 45.455 0.00 0.00 33.66 2.87
1976 2533 3.181506 GGGCTCAATTTAACAGCGAGAAG 60.182 47.826 0.00 0.00 33.66 2.85
1977 2534 3.684788 GGCTCAATTTAACAGCGAGAAGA 59.315 43.478 0.00 0.00 33.66 2.87
1978 2535 4.333926 GGCTCAATTTAACAGCGAGAAGAT 59.666 41.667 0.00 0.00 33.66 2.40
1979 2536 5.163713 GGCTCAATTTAACAGCGAGAAGATT 60.164 40.000 0.00 0.00 33.66 2.40
1980 2537 6.037172 GGCTCAATTTAACAGCGAGAAGATTA 59.963 38.462 0.00 0.00 33.66 1.75
1981 2538 7.414098 GGCTCAATTTAACAGCGAGAAGATTAA 60.414 37.037 0.00 0.00 33.66 1.40
1982 2539 7.962918 GCTCAATTTAACAGCGAGAAGATTAAA 59.037 33.333 0.00 0.00 0.00 1.52
1983 2540 9.994432 CTCAATTTAACAGCGAGAAGATTAAAT 57.006 29.630 0.00 0.00 37.15 1.40
1984 2541 9.773328 TCAATTTAACAGCGAGAAGATTAAATG 57.227 29.630 0.00 0.00 36.22 2.32
1985 2542 8.526681 CAATTTAACAGCGAGAAGATTAAATGC 58.473 33.333 0.00 0.00 36.22 3.56
1986 2543 4.622701 AACAGCGAGAAGATTAAATGCC 57.377 40.909 0.00 0.00 0.00 4.40
1987 2544 3.609853 ACAGCGAGAAGATTAAATGCCA 58.390 40.909 0.00 0.00 0.00 4.92
1988 2545 4.202441 ACAGCGAGAAGATTAAATGCCAT 58.798 39.130 0.00 0.00 0.00 4.40
1989 2546 4.641989 ACAGCGAGAAGATTAAATGCCATT 59.358 37.500 0.00 0.00 0.00 3.16
1990 2547 5.126061 ACAGCGAGAAGATTAAATGCCATTT 59.874 36.000 7.93 7.93 36.29 2.32
1991 2548 6.038356 CAGCGAGAAGATTAAATGCCATTTT 58.962 36.000 8.15 0.00 33.82 1.82
1992 2549 6.020121 CAGCGAGAAGATTAAATGCCATTTTG 60.020 38.462 8.15 0.00 33.82 2.44
1993 2550 6.035843 GCGAGAAGATTAAATGCCATTTTGA 58.964 36.000 8.15 0.00 33.82 2.69
1994 2551 6.531240 GCGAGAAGATTAAATGCCATTTTGAA 59.469 34.615 8.15 0.00 33.82 2.69
1995 2552 7.253883 GCGAGAAGATTAAATGCCATTTTGAAG 60.254 37.037 8.15 0.00 33.82 3.02
1996 2553 7.970061 CGAGAAGATTAAATGCCATTTTGAAGA 59.030 33.333 8.15 0.00 33.82 2.87
1997 2554 9.298774 GAGAAGATTAAATGCCATTTTGAAGAG 57.701 33.333 8.15 0.00 33.82 2.85
1998 2555 9.028284 AGAAGATTAAATGCCATTTTGAAGAGA 57.972 29.630 8.15 0.00 33.82 3.10
1999 2556 9.643693 GAAGATTAAATGCCATTTTGAAGAGAA 57.356 29.630 8.15 0.00 33.82 2.87
2003 2560 8.606040 TTAAATGCCATTTTGAAGAGAAAAGG 57.394 30.769 8.15 0.00 33.82 3.11
2004 2561 4.605640 TGCCATTTTGAAGAGAAAAGGG 57.394 40.909 0.00 0.00 45.45 3.95
2006 2563 4.605640 CCATTTTGAAGAGAAAAGGGCA 57.394 40.909 0.00 0.00 39.24 5.36
2007 2564 5.156608 CCATTTTGAAGAGAAAAGGGCAT 57.843 39.130 0.00 0.00 39.24 4.40
2008 2565 5.554070 CCATTTTGAAGAGAAAAGGGCATT 58.446 37.500 0.00 0.00 39.24 3.56
2009 2566 6.700352 CCATTTTGAAGAGAAAAGGGCATTA 58.300 36.000 0.00 0.00 39.24 1.90
2010 2567 7.160726 CCATTTTGAAGAGAAAAGGGCATTAA 58.839 34.615 0.00 0.00 39.24 1.40
2011 2568 7.661027 CCATTTTGAAGAGAAAAGGGCATTAAA 59.339 33.333 0.00 0.00 39.24 1.52
2012 2569 9.223099 CATTTTGAAGAGAAAAGGGCATTAAAT 57.777 29.630 0.00 0.00 0.00 1.40
2013 2570 8.606040 TTTTGAAGAGAAAAGGGCATTAAATG 57.394 30.769 0.00 0.00 0.00 2.32
2031 2588 9.434420 CATTAAATGCTAATCCTTTTGTCCAAA 57.566 29.630 0.00 0.00 0.00 3.28
2035 2592 9.657419 AAATGCTAATCCTTTTGTCCAAATAAG 57.343 29.630 0.00 0.00 0.00 1.73
2036 2593 6.630071 TGCTAATCCTTTTGTCCAAATAAGC 58.370 36.000 0.00 0.00 0.00 3.09
2037 2594 6.437162 TGCTAATCCTTTTGTCCAAATAAGCT 59.563 34.615 0.00 0.00 0.00 3.74
2038 2595 7.613801 TGCTAATCCTTTTGTCCAAATAAGCTA 59.386 33.333 0.00 0.00 0.00 3.32
2039 2596 8.466798 GCTAATCCTTTTGTCCAAATAAGCTAA 58.533 33.333 0.00 0.00 0.00 3.09
2041 2598 8.650143 AATCCTTTTGTCCAAATAAGCTAAGA 57.350 30.769 0.00 0.00 0.00 2.10
2042 2599 8.829373 ATCCTTTTGTCCAAATAAGCTAAGAT 57.171 30.769 0.00 0.00 0.00 2.40
2043 2600 8.650143 TCCTTTTGTCCAAATAAGCTAAGATT 57.350 30.769 0.00 0.00 0.00 2.40
2044 2601 9.088987 TCCTTTTGTCCAAATAAGCTAAGATTT 57.911 29.630 0.00 0.00 0.00 2.17
2045 2602 9.710900 CCTTTTGTCCAAATAAGCTAAGATTTT 57.289 29.630 0.00 0.00 0.00 1.82
2047 2604 8.532977 TTTGTCCAAATAAGCTAAGATTTTGC 57.467 30.769 0.00 0.00 0.00 3.68
2048 2605 6.630071 TGTCCAAATAAGCTAAGATTTTGCC 58.370 36.000 0.00 0.00 0.00 4.52
2049 2606 6.042777 GTCCAAATAAGCTAAGATTTTGCCC 58.957 40.000 0.00 0.00 0.00 5.36
2050 2607 5.043248 CCAAATAAGCTAAGATTTTGCCCG 58.957 41.667 0.00 0.00 0.00 6.13
2051 2608 5.163561 CCAAATAAGCTAAGATTTTGCCCGA 60.164 40.000 0.00 0.00 0.00 5.14
2052 2609 6.329496 CAAATAAGCTAAGATTTTGCCCGAA 58.671 36.000 0.00 0.00 0.00 4.30
2053 2610 6.715347 AATAAGCTAAGATTTTGCCCGAAT 57.285 33.333 0.00 0.00 0.00 3.34
2054 2611 7.817418 AATAAGCTAAGATTTTGCCCGAATA 57.183 32.000 0.00 0.00 0.00 1.75
2055 2612 5.500645 AAGCTAAGATTTTGCCCGAATAC 57.499 39.130 0.00 0.00 0.00 1.89
2056 2613 4.781934 AGCTAAGATTTTGCCCGAATACT 58.218 39.130 0.00 0.00 0.00 2.12
2057 2614 4.576463 AGCTAAGATTTTGCCCGAATACTG 59.424 41.667 0.00 0.00 0.00 2.74
2058 2615 4.335594 GCTAAGATTTTGCCCGAATACTGT 59.664 41.667 0.00 0.00 0.00 3.55
2059 2616 4.965119 AAGATTTTGCCCGAATACTGTC 57.035 40.909 0.00 0.00 0.00 3.51
2060 2617 3.950397 AGATTTTGCCCGAATACTGTCA 58.050 40.909 0.00 0.00 0.00 3.58
2061 2618 4.526970 AGATTTTGCCCGAATACTGTCAT 58.473 39.130 0.00 0.00 0.00 3.06
2062 2619 4.949856 AGATTTTGCCCGAATACTGTCATT 59.050 37.500 0.00 0.00 0.00 2.57
2063 2620 5.418840 AGATTTTGCCCGAATACTGTCATTT 59.581 36.000 0.00 0.00 0.00 2.32
2064 2621 5.461032 TTTTGCCCGAATACTGTCATTTT 57.539 34.783 0.00 0.00 0.00 1.82
2065 2622 6.576662 TTTTGCCCGAATACTGTCATTTTA 57.423 33.333 0.00 0.00 0.00 1.52
2066 2623 6.767524 TTTGCCCGAATACTGTCATTTTAT 57.232 33.333 0.00 0.00 0.00 1.40
2067 2624 5.749596 TGCCCGAATACTGTCATTTTATG 57.250 39.130 0.00 0.00 0.00 1.90
2068 2625 4.578516 TGCCCGAATACTGTCATTTTATGG 59.421 41.667 0.00 0.00 0.00 2.74
2069 2626 4.578928 GCCCGAATACTGTCATTTTATGGT 59.421 41.667 0.00 0.00 0.00 3.55
2070 2627 5.067283 GCCCGAATACTGTCATTTTATGGTT 59.933 40.000 0.00 0.00 0.00 3.67
2071 2628 6.405397 GCCCGAATACTGTCATTTTATGGTTT 60.405 38.462 0.00 0.00 0.00 3.27
2072 2629 7.543756 CCCGAATACTGTCATTTTATGGTTTT 58.456 34.615 0.00 0.00 0.00 2.43
2073 2630 7.700656 CCCGAATACTGTCATTTTATGGTTTTC 59.299 37.037 0.00 0.00 0.00 2.29
2074 2631 8.458843 CCGAATACTGTCATTTTATGGTTTTCT 58.541 33.333 0.00 0.00 0.00 2.52
2075 2632 9.840427 CGAATACTGTCATTTTATGGTTTTCTT 57.160 29.630 0.00 0.00 0.00 2.52
2135 2692 8.577048 TCTACCTAAATAGTCATTATCTCCCG 57.423 38.462 0.00 0.00 0.00 5.14
2136 2693 6.607004 ACCTAAATAGTCATTATCTCCCGG 57.393 41.667 0.00 0.00 0.00 5.73
2137 2694 6.082707 ACCTAAATAGTCATTATCTCCCGGT 58.917 40.000 0.00 0.00 0.00 5.28
2138 2695 6.210984 ACCTAAATAGTCATTATCTCCCGGTC 59.789 42.308 0.00 0.00 0.00 4.79
2139 2696 5.485209 AAATAGTCATTATCTCCCGGTCC 57.515 43.478 0.00 0.00 0.00 4.46
2140 2697 2.777459 AGTCATTATCTCCCGGTCCT 57.223 50.000 0.00 0.00 0.00 3.85
2141 2698 3.047695 AGTCATTATCTCCCGGTCCTT 57.952 47.619 0.00 0.00 0.00 3.36
2142 2699 3.385115 AGTCATTATCTCCCGGTCCTTT 58.615 45.455 0.00 0.00 0.00 3.11
2143 2700 3.388350 AGTCATTATCTCCCGGTCCTTTC 59.612 47.826 0.00 0.00 0.00 2.62
2144 2701 2.364324 TCATTATCTCCCGGTCCTTTCG 59.636 50.000 0.00 0.00 0.00 3.46
2145 2702 0.462789 TTATCTCCCGGTCCTTTCGC 59.537 55.000 0.00 0.00 0.00 4.70
2146 2703 0.396695 TATCTCCCGGTCCTTTCGCT 60.397 55.000 0.00 0.00 0.00 4.93
2147 2704 1.265454 ATCTCCCGGTCCTTTCGCTT 61.265 55.000 0.00 0.00 0.00 4.68
2148 2705 1.448013 CTCCCGGTCCTTTCGCTTC 60.448 63.158 0.00 0.00 0.00 3.86
2149 2706 2.167398 CTCCCGGTCCTTTCGCTTCA 62.167 60.000 0.00 0.00 0.00 3.02
2150 2707 1.302192 CCCGGTCCTTTCGCTTCAA 60.302 57.895 0.00 0.00 0.00 2.69
2151 2708 0.887387 CCCGGTCCTTTCGCTTCAAA 60.887 55.000 0.00 0.00 0.00 2.69
2152 2709 0.237498 CCGGTCCTTTCGCTTCAAAC 59.763 55.000 0.00 0.00 0.00 2.93
2153 2710 0.941542 CGGTCCTTTCGCTTCAAACA 59.058 50.000 0.00 0.00 0.00 2.83
2154 2711 1.332375 CGGTCCTTTCGCTTCAAACAA 59.668 47.619 0.00 0.00 0.00 2.83
2155 2712 2.602217 CGGTCCTTTCGCTTCAAACAAG 60.602 50.000 0.00 0.00 0.00 3.16
2156 2713 2.385315 GTCCTTTCGCTTCAAACAAGC 58.615 47.619 0.00 0.00 39.77 4.01
2157 2714 2.033424 GTCCTTTCGCTTCAAACAAGCT 59.967 45.455 4.90 0.00 40.94 3.74
2158 2715 2.033299 TCCTTTCGCTTCAAACAAGCTG 59.967 45.455 4.90 0.00 40.94 4.24
2159 2716 2.033299 CCTTTCGCTTCAAACAAGCTGA 59.967 45.455 4.90 1.76 40.94 4.26
2160 2717 3.489059 CCTTTCGCTTCAAACAAGCTGAA 60.489 43.478 4.90 7.02 40.94 3.02
2161 2718 3.773860 TTCGCTTCAAACAAGCTGAAA 57.226 38.095 4.90 0.00 40.94 2.69
2162 2719 3.065019 TCGCTTCAAACAAGCTGAAAC 57.935 42.857 4.90 0.00 40.94 2.78
2163 2720 2.682856 TCGCTTCAAACAAGCTGAAACT 59.317 40.909 4.90 0.00 40.94 2.66
2164 2721 3.128589 TCGCTTCAAACAAGCTGAAACTT 59.871 39.130 4.90 0.00 40.94 2.66
2165 2722 3.859386 CGCTTCAAACAAGCTGAAACTTT 59.141 39.130 4.90 0.00 40.94 2.66
2166 2723 4.027377 CGCTTCAAACAAGCTGAAACTTTC 60.027 41.667 4.90 0.00 40.94 2.62
2167 2724 5.105063 GCTTCAAACAAGCTGAAACTTTCT 58.895 37.500 3.22 0.00 40.01 2.52
2168 2725 5.578336 GCTTCAAACAAGCTGAAACTTTCTT 59.422 36.000 3.22 0.00 40.01 2.52
2169 2726 6.751888 GCTTCAAACAAGCTGAAACTTTCTTA 59.248 34.615 3.22 0.00 40.01 2.10
2170 2727 7.043788 GCTTCAAACAAGCTGAAACTTTCTTAG 60.044 37.037 3.22 0.00 40.01 2.18
2171 2728 7.624360 TCAAACAAGCTGAAACTTTCTTAGA 57.376 32.000 3.22 0.00 0.00 2.10
2172 2729 8.225603 TCAAACAAGCTGAAACTTTCTTAGAT 57.774 30.769 3.22 0.00 0.00 1.98
2173 2730 8.686334 TCAAACAAGCTGAAACTTTCTTAGATT 58.314 29.630 3.22 0.00 0.00 2.40
2174 2731 9.950680 CAAACAAGCTGAAACTTTCTTAGATTA 57.049 29.630 3.22 0.00 0.00 1.75
2175 2732 9.952188 AAACAAGCTGAAACTTTCTTAGATTAC 57.048 29.630 3.22 0.00 0.00 1.89
2176 2733 8.910351 ACAAGCTGAAACTTTCTTAGATTACT 57.090 30.769 3.22 0.00 0.00 2.24
2177 2734 9.998106 ACAAGCTGAAACTTTCTTAGATTACTA 57.002 29.630 3.22 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.336889 AACACTCACCGAAATGAAGAGA 57.663 40.909 0.00 0.00 0.00 3.10
105 106 1.408340 CATGTCCAGCACACAACCAAA 59.592 47.619 0.00 0.00 38.04 3.28
110 111 2.221169 GAAGTCATGTCCAGCACACAA 58.779 47.619 0.00 0.00 38.04 3.33
118 119 0.036732 GGTGCTGGAAGTCATGTCCA 59.963 55.000 3.69 3.69 43.03 4.02
138 139 4.082949 GGGTTAAAGCTGGTCATTACACAC 60.083 45.833 0.00 0.00 0.00 3.82
140 141 3.442625 GGGGTTAAAGCTGGTCATTACAC 59.557 47.826 0.00 0.00 0.00 2.90
141 142 3.074687 TGGGGTTAAAGCTGGTCATTACA 59.925 43.478 0.00 0.00 0.00 2.41
149 150 2.755103 GAGTGATTGGGGTTAAAGCTGG 59.245 50.000 0.00 0.00 0.00 4.85
170 171 6.619801 AGAAAACAGTAAACCAGCAGTAAG 57.380 37.500 0.00 0.00 0.00 2.34
176 177 5.515797 AAGGAAGAAAACAGTAAACCAGC 57.484 39.130 0.00 0.00 0.00 4.85
206 207 9.585369 TGATGGCCTTTACAAATATTATGATGA 57.415 29.630 3.32 0.00 0.00 2.92
209 210 9.365906 ACATGATGGCCTTTACAAATATTATGA 57.634 29.630 3.32 0.00 0.00 2.15
210 211 9.630098 GACATGATGGCCTTTACAAATATTATG 57.370 33.333 3.32 0.67 0.00 1.90
212 213 8.629158 GTGACATGATGGCCTTTACAAATATTA 58.371 33.333 3.32 0.00 0.00 0.98
213 214 7.491682 GTGACATGATGGCCTTTACAAATATT 58.508 34.615 3.32 0.00 0.00 1.28
214 215 6.238731 CGTGACATGATGGCCTTTACAAATAT 60.239 38.462 3.32 0.00 0.00 1.28
215 216 5.065859 CGTGACATGATGGCCTTTACAAATA 59.934 40.000 3.32 0.00 0.00 1.40
225 226 0.391661 ACTCACGTGACATGATGGCC 60.392 55.000 15.76 0.00 0.00 5.36
232 233 9.136952 GACTTAATTAGTTAACTCACGTGACAT 57.863 33.333 15.76 8.87 37.17 3.06
234 235 8.511465 TGACTTAATTAGTTAACTCACGTGAC 57.489 34.615 15.76 5.06 37.17 3.67
235 236 9.701098 ATTGACTTAATTAGTTAACTCACGTGA 57.299 29.630 18.88 18.88 35.46 4.35
236 237 9.953825 GATTGACTTAATTAGTTAACTCACGTG 57.046 33.333 12.39 9.94 35.46 4.49
254 261 7.692460 TGCTGAATTCTATGTTGATTGACTT 57.308 32.000 7.05 0.00 0.00 3.01
276 283 2.819608 TGAGGCTTTGTAGGTTTGATGC 59.180 45.455 0.00 0.00 0.00 3.91
279 286 6.719370 ACATAAATGAGGCTTTGTAGGTTTGA 59.281 34.615 0.00 0.00 0.00 2.69
280 287 6.924111 ACATAAATGAGGCTTTGTAGGTTTG 58.076 36.000 0.00 0.00 0.00 2.93
281 288 6.719370 TGACATAAATGAGGCTTTGTAGGTTT 59.281 34.615 0.00 0.00 0.00 3.27
282 289 6.245408 TGACATAAATGAGGCTTTGTAGGTT 58.755 36.000 0.00 0.00 0.00 3.50
283 290 5.815581 TGACATAAATGAGGCTTTGTAGGT 58.184 37.500 0.00 0.00 0.00 3.08
284 291 6.543465 TCATGACATAAATGAGGCTTTGTAGG 59.457 38.462 0.00 0.00 30.61 3.18
285 292 7.558161 TCATGACATAAATGAGGCTTTGTAG 57.442 36.000 0.00 0.00 30.61 2.74
286 293 8.523915 AATCATGACATAAATGAGGCTTTGTA 57.476 30.769 0.00 0.00 37.46 2.41
287 294 7.414222 AATCATGACATAAATGAGGCTTTGT 57.586 32.000 0.00 0.00 37.46 2.83
288 295 7.977293 TCAAATCATGACATAAATGAGGCTTTG 59.023 33.333 0.00 0.33 37.46 2.77
289 296 8.070034 TCAAATCATGACATAAATGAGGCTTT 57.930 30.769 0.00 0.00 37.46 3.51
290 297 7.649533 TCAAATCATGACATAAATGAGGCTT 57.350 32.000 0.00 0.00 37.46 4.35
291 298 7.649533 TTCAAATCATGACATAAATGAGGCT 57.350 32.000 0.00 0.00 37.92 4.58
292 299 6.420008 GCTTCAAATCATGACATAAATGAGGC 59.580 38.462 0.00 5.22 37.92 4.70
293 300 7.485810 TGCTTCAAATCATGACATAAATGAGG 58.514 34.615 0.00 0.00 37.92 3.86
305 312 4.400251 AGGTGGTGTATGCTTCAAATCATG 59.600 41.667 0.00 0.00 0.00 3.07
372 382 7.867403 GCATACCCATTGTCAAACCATAAATAG 59.133 37.037 0.00 0.00 0.00 1.73
381 391 3.129287 CAGAGGCATACCCATTGTCAAAC 59.871 47.826 0.00 0.00 36.11 2.93
383 393 2.945440 GCAGAGGCATACCCATTGTCAA 60.945 50.000 0.00 0.00 40.72 3.18
440 450 7.009357 GCTCTCTAAGATACAAACCGTAAACTG 59.991 40.741 0.00 0.00 32.59 3.16
465 475 2.480759 GGATGGCATTCACAAGTCATGC 60.481 50.000 0.00 5.65 42.26 4.06
471 481 2.431954 AGGAGGATGGCATTCACAAG 57.568 50.000 8.81 0.00 0.00 3.16
481 491 2.543861 CGTTCATGACGTAGGAGGATGG 60.544 54.545 0.00 0.00 46.49 3.51
514 524 9.012161 TGATACTGAATTTCATGTTGATTGACA 57.988 29.630 0.00 0.00 0.00 3.58
528 538 8.478877 AGGTCTCGTAGATTTGATACTGAATTT 58.521 33.333 0.00 0.00 33.89 1.82
544 554 9.098355 TCAAATCATAAAAATGAGGTCTCGTAG 57.902 33.333 0.00 0.00 33.59 3.51
547 557 7.430502 GCTTCAAATCATAAAAATGAGGTCTCG 59.569 37.037 0.00 0.00 33.59 4.04
580 590 2.359900 GAATTCAGATCGCAGGTGGTT 58.640 47.619 0.00 0.00 0.00 3.67
590 600 8.945481 AAGATGATATGATCGGAATTCAGATC 57.055 34.615 30.37 30.37 44.32 2.75
601 611 8.267620 ACAGACTAGAGAAGATGATATGATCG 57.732 38.462 0.00 0.00 0.00 3.69
640 650 3.379372 CAGAGGCATACCCATTGTCAAAG 59.621 47.826 0.00 0.00 36.11 2.77
642 652 2.945440 GCAGAGGCATACCCATTGTCAA 60.945 50.000 0.00 0.00 40.72 3.18
648 658 2.913203 AGATAGCAGAGGCATACCCAT 58.087 47.619 0.00 0.00 44.61 4.00
654 664 4.102210 ACAACACATAGATAGCAGAGGCAT 59.898 41.667 0.00 0.00 44.61 4.40
712 742 7.910441 CAAAGGTTTGGCTTGAATGAAATAT 57.090 32.000 0.00 0.00 34.59 1.28
768 798 2.635714 TGCATCATCCATGTGTCAGAC 58.364 47.619 0.00 0.00 34.56 3.51
782 812 8.510243 AATGTTCTCACAGTTATATTGCATCA 57.490 30.769 0.00 0.00 35.94 3.07
841 871 6.480763 TGAACTGCTGGGTTTCTTATATCAA 58.519 36.000 0.00 0.00 0.00 2.57
844 874 7.229506 GCTTATGAACTGCTGGGTTTCTTATAT 59.770 37.037 0.00 0.00 0.00 0.86
871 925 4.201685 GGCGTGTAATAAACTGCACAGTAG 60.202 45.833 3.26 0.00 41.58 2.57
938 1185 6.090088 CAGAGAAGTTTCACGAAGGTATTCTG 59.910 42.308 0.00 0.00 32.93 3.02
940 1187 5.927115 ACAGAGAAGTTTCACGAAGGTATTC 59.073 40.000 0.00 0.00 0.00 1.75
941 1188 5.696724 CACAGAGAAGTTTCACGAAGGTATT 59.303 40.000 0.00 0.00 0.00 1.89
949 1196 2.473816 TCAGCACAGAGAAGTTTCACG 58.526 47.619 0.00 0.00 0.00 4.35
950 1197 4.754114 AGAATCAGCACAGAGAAGTTTCAC 59.246 41.667 0.00 0.00 0.00 3.18
951 1198 4.965814 AGAATCAGCACAGAGAAGTTTCA 58.034 39.130 0.00 0.00 0.00 2.69
952 1199 5.938438 AAGAATCAGCACAGAGAAGTTTC 57.062 39.130 0.00 0.00 0.00 2.78
963 1210 3.648339 TGCCAAGAAAAGAATCAGCAC 57.352 42.857 0.00 0.00 0.00 4.40
1072 1319 3.960755 ACGATGTAGGTGATGATCCTCAA 59.039 43.478 1.92 0.00 36.60 3.02
1194 1447 3.542969 ACATTCCTGGGGCTTTAGTTT 57.457 42.857 0.00 0.00 0.00 2.66
1352 1609 3.730715 CGCAAACTCCATGTCAAAGAAAC 59.269 43.478 0.00 0.00 0.00 2.78
1377 1634 3.177228 AGAGAACACTACCAATGGAGCT 58.823 45.455 6.16 0.00 0.00 4.09
1432 1712 5.918608 ACAAGAGAAACACTAGCTTCAGAA 58.081 37.500 0.00 0.00 0.00 3.02
1433 1713 5.537300 ACAAGAGAAACACTAGCTTCAGA 57.463 39.130 0.00 0.00 0.00 3.27
1459 1962 1.367346 TGAACCCACCTCATAGCCAA 58.633 50.000 0.00 0.00 0.00 4.52
1462 1965 3.010420 GTCTTTGAACCCACCTCATAGC 58.990 50.000 0.00 0.00 0.00 2.97
1562 2119 3.771577 ATCGAGGAACACTTTCAGGTT 57.228 42.857 0.00 0.00 32.80 3.50
1564 2121 4.457834 ACTATCGAGGAACACTTTCAGG 57.542 45.455 0.00 0.00 32.80 3.86
1571 2128 8.156994 ACTTCTCTATAACTATCGAGGAACAC 57.843 38.462 0.00 0.00 0.00 3.32
1595 2152 4.231718 TGCTTACAAATTGACCCGAAAC 57.768 40.909 0.00 0.00 0.00 2.78
1597 2154 4.920640 TTTGCTTACAAATTGACCCGAA 57.079 36.364 0.00 0.00 40.84 4.30
1598 2155 4.920640 TTTTGCTTACAAATTGACCCGA 57.079 36.364 0.00 0.00 44.96 5.14
1649 2206 3.618594 GCTTACTTCATCACTTCATCGCA 59.381 43.478 0.00 0.00 0.00 5.10
1650 2207 3.868077 AGCTTACTTCATCACTTCATCGC 59.132 43.478 0.00 0.00 0.00 4.58
1651 2208 6.346439 GCATAGCTTACTTCATCACTTCATCG 60.346 42.308 0.00 0.00 0.00 3.84
1652 2209 6.073331 GGCATAGCTTACTTCATCACTTCATC 60.073 42.308 0.00 0.00 0.00 2.92
1653 2210 5.762218 GGCATAGCTTACTTCATCACTTCAT 59.238 40.000 0.00 0.00 0.00 2.57
1654 2211 5.104776 AGGCATAGCTTACTTCATCACTTCA 60.105 40.000 0.00 0.00 0.00 3.02
1655 2212 5.363939 AGGCATAGCTTACTTCATCACTTC 58.636 41.667 0.00 0.00 0.00 3.01
1656 2213 5.104776 TGAGGCATAGCTTACTTCATCACTT 60.105 40.000 0.00 0.00 0.00 3.16
1657 2214 4.406972 TGAGGCATAGCTTACTTCATCACT 59.593 41.667 0.00 0.00 0.00 3.41
1658 2215 4.697514 TGAGGCATAGCTTACTTCATCAC 58.302 43.478 0.00 0.00 0.00 3.06
1659 2216 4.741837 GCTGAGGCATAGCTTACTTCATCA 60.742 45.833 0.00 0.00 38.14 3.07
1660 2217 3.745458 GCTGAGGCATAGCTTACTTCATC 59.255 47.826 0.00 0.00 38.14 2.92
1680 2237 0.179062 CTGCTTCTATTGCCGGAGCT 60.179 55.000 5.05 0.00 40.80 4.09
1717 2274 1.733360 GTACGGAGCCGCAAACAAATA 59.267 47.619 9.14 0.00 44.19 1.40
1718 2275 0.519961 GTACGGAGCCGCAAACAAAT 59.480 50.000 9.14 0.00 44.19 2.32
1719 2276 0.814410 TGTACGGAGCCGCAAACAAA 60.814 50.000 9.14 0.00 44.19 2.83
1720 2277 0.814410 TTGTACGGAGCCGCAAACAA 60.814 50.000 16.22 16.22 44.19 2.83
1721 2278 1.227586 TTGTACGGAGCCGCAAACA 60.228 52.632 9.14 8.38 44.19 2.83
1722 2279 1.205820 GTTGTACGGAGCCGCAAAC 59.794 57.895 9.14 7.42 44.19 2.93
1723 2280 0.317799 TAGTTGTACGGAGCCGCAAA 59.682 50.000 9.14 0.00 44.19 3.68
1724 2281 0.533491 ATAGTTGTACGGAGCCGCAA 59.467 50.000 9.14 3.40 44.19 4.85
1725 2282 1.335810 CTATAGTTGTACGGAGCCGCA 59.664 52.381 9.14 0.00 44.19 5.69
1726 2283 1.335689 CCTATAGTTGTACGGAGCCGC 60.336 57.143 9.14 0.00 44.19 6.53
1727 2284 2.224606 TCCTATAGTTGTACGGAGCCG 58.775 52.381 7.48 7.48 46.03 5.52
1728 2285 4.660789 TTTCCTATAGTTGTACGGAGCC 57.339 45.455 0.00 0.00 0.00 4.70
1729 2286 5.695363 GGAATTTCCTATAGTTGTACGGAGC 59.305 44.000 8.25 0.00 32.53 4.70
1730 2287 6.812998 TGGAATTTCCTATAGTTGTACGGAG 58.187 40.000 16.25 0.00 37.46 4.63
1731 2288 6.795144 TGGAATTTCCTATAGTTGTACGGA 57.205 37.500 16.25 0.00 37.46 4.69
1732 2289 6.426937 CCATGGAATTTCCTATAGTTGTACGG 59.573 42.308 16.25 1.27 37.46 4.02
1733 2290 6.073222 GCCATGGAATTTCCTATAGTTGTACG 60.073 42.308 18.40 0.00 37.46 3.67
1734 2291 6.998673 AGCCATGGAATTTCCTATAGTTGTAC 59.001 38.462 18.40 0.00 37.46 2.90
1735 2292 7.149202 AGCCATGGAATTTCCTATAGTTGTA 57.851 36.000 18.40 0.00 37.46 2.41
1736 2293 6.018433 AGCCATGGAATTTCCTATAGTTGT 57.982 37.500 18.40 0.00 37.46 3.32
1737 2294 6.998074 TGTAGCCATGGAATTTCCTATAGTTG 59.002 38.462 18.40 5.01 37.46 3.16
1738 2295 7.149202 TGTAGCCATGGAATTTCCTATAGTT 57.851 36.000 18.40 4.04 37.46 2.24
1739 2296 6.745474 GCTGTAGCCATGGAATTTCCTATAGT 60.745 42.308 18.40 1.95 34.30 2.12
1740 2297 5.645497 GCTGTAGCCATGGAATTTCCTATAG 59.355 44.000 18.40 13.99 34.30 1.31
1741 2298 5.310594 AGCTGTAGCCATGGAATTTCCTATA 59.689 40.000 18.40 3.58 43.38 1.31
1742 2299 4.105377 AGCTGTAGCCATGGAATTTCCTAT 59.895 41.667 18.40 5.89 43.38 2.57
1743 2300 3.459598 AGCTGTAGCCATGGAATTTCCTA 59.540 43.478 18.40 2.88 43.38 2.94
1744 2301 2.243221 AGCTGTAGCCATGGAATTTCCT 59.757 45.455 18.40 4.01 43.38 3.36
1745 2302 2.659428 AGCTGTAGCCATGGAATTTCC 58.341 47.619 18.40 8.59 43.38 3.13
1746 2303 4.725790 AAAGCTGTAGCCATGGAATTTC 57.274 40.909 18.40 0.00 43.38 2.17
1747 2304 4.527816 TCAAAAGCTGTAGCCATGGAATTT 59.472 37.500 18.40 1.85 43.38 1.82
1748 2305 4.088634 TCAAAAGCTGTAGCCATGGAATT 58.911 39.130 18.40 2.12 43.38 2.17
1749 2306 3.698040 CTCAAAAGCTGTAGCCATGGAAT 59.302 43.478 18.40 5.40 43.38 3.01
1750 2307 3.084039 CTCAAAAGCTGTAGCCATGGAA 58.916 45.455 18.40 0.00 43.38 3.53
1751 2308 2.715046 CTCAAAAGCTGTAGCCATGGA 58.285 47.619 18.40 0.00 43.38 3.41
1752 2309 1.133790 GCTCAAAAGCTGTAGCCATGG 59.866 52.381 7.63 7.63 45.55 3.66
1753 2310 2.556534 GCTCAAAAGCTGTAGCCATG 57.443 50.000 0.00 0.00 45.55 3.66
1786 2343 5.373981 TCGCCCATTAACAACGTATTTTT 57.626 34.783 0.00 0.00 0.00 1.94
1787 2344 5.355910 AGATCGCCCATTAACAACGTATTTT 59.644 36.000 0.00 0.00 0.00 1.82
1788 2345 4.879545 AGATCGCCCATTAACAACGTATTT 59.120 37.500 0.00 0.00 0.00 1.40
1789 2346 4.272504 CAGATCGCCCATTAACAACGTATT 59.727 41.667 0.00 0.00 0.00 1.89
1790 2347 3.807622 CAGATCGCCCATTAACAACGTAT 59.192 43.478 0.00 0.00 0.00 3.06
1791 2348 3.191669 CAGATCGCCCATTAACAACGTA 58.808 45.455 0.00 0.00 0.00 3.57
1792 2349 2.006888 CAGATCGCCCATTAACAACGT 58.993 47.619 0.00 0.00 0.00 3.99
1793 2350 1.268032 GCAGATCGCCCATTAACAACG 60.268 52.381 0.00 0.00 32.94 4.10
1794 2351 2.475200 GCAGATCGCCCATTAACAAC 57.525 50.000 0.00 0.00 32.94 3.32
1805 2362 1.135575 CCAAGTTTCTTGGCAGATCGC 60.136 52.381 14.29 1.55 41.28 4.58
1806 2363 2.154462 ACCAAGTTTCTTGGCAGATCG 58.846 47.619 23.21 4.01 43.23 3.69
1807 2364 3.569701 TCAACCAAGTTTCTTGGCAGATC 59.430 43.478 23.21 0.00 43.23 2.75
1808 2365 3.565307 TCAACCAAGTTTCTTGGCAGAT 58.435 40.909 23.21 8.89 43.23 2.90
1809 2366 2.951642 CTCAACCAAGTTTCTTGGCAGA 59.048 45.455 23.21 19.53 43.23 4.26
1810 2367 2.544486 GCTCAACCAAGTTTCTTGGCAG 60.544 50.000 23.21 17.89 43.23 4.85
1811 2368 1.408702 GCTCAACCAAGTTTCTTGGCA 59.591 47.619 23.21 10.45 43.23 4.92
1812 2369 1.683385 AGCTCAACCAAGTTTCTTGGC 59.317 47.619 23.21 12.08 43.23 4.52
1813 2370 2.035066 CCAGCTCAACCAAGTTTCTTGG 59.965 50.000 22.11 22.11 44.91 3.61
1814 2371 2.689983 ACCAGCTCAACCAAGTTTCTTG 59.310 45.455 2.90 2.90 0.00 3.02
1815 2372 2.689983 CACCAGCTCAACCAAGTTTCTT 59.310 45.455 0.00 0.00 0.00 2.52
1816 2373 2.301346 CACCAGCTCAACCAAGTTTCT 58.699 47.619 0.00 0.00 0.00 2.52
1817 2374 1.338020 CCACCAGCTCAACCAAGTTTC 59.662 52.381 0.00 0.00 0.00 2.78
1818 2375 1.402787 CCACCAGCTCAACCAAGTTT 58.597 50.000 0.00 0.00 0.00 2.66
1819 2376 1.109323 GCCACCAGCTCAACCAAGTT 61.109 55.000 0.00 0.00 38.99 2.66
1820 2377 1.529244 GCCACCAGCTCAACCAAGT 60.529 57.895 0.00 0.00 38.99 3.16
1821 2378 0.896940 ATGCCACCAGCTCAACCAAG 60.897 55.000 0.00 0.00 44.23 3.61
1822 2379 1.153524 ATGCCACCAGCTCAACCAA 59.846 52.632 0.00 0.00 44.23 3.67
1823 2380 1.604308 CATGCCACCAGCTCAACCA 60.604 57.895 0.00 0.00 44.23 3.67
1824 2381 1.303561 TCATGCCACCAGCTCAACC 60.304 57.895 0.00 0.00 44.23 3.77
1825 2382 0.890542 TGTCATGCCACCAGCTCAAC 60.891 55.000 0.00 0.00 44.23 3.18
1826 2383 0.607217 CTGTCATGCCACCAGCTCAA 60.607 55.000 0.00 0.00 44.23 3.02
1827 2384 1.002990 CTGTCATGCCACCAGCTCA 60.003 57.895 0.00 0.00 44.23 4.26
1828 2385 0.107312 ATCTGTCATGCCACCAGCTC 60.107 55.000 0.00 0.00 44.23 4.09
1829 2386 1.206878 TATCTGTCATGCCACCAGCT 58.793 50.000 0.00 0.00 44.23 4.24
1830 2387 1.945394 CTTATCTGTCATGCCACCAGC 59.055 52.381 0.00 0.00 44.14 4.85
1831 2388 3.118482 AGACTTATCTGTCATGCCACCAG 60.118 47.826 0.00 0.00 39.27 4.00
1832 2389 2.840038 AGACTTATCTGTCATGCCACCA 59.160 45.455 0.00 0.00 39.27 4.17
1833 2390 3.550437 AGACTTATCTGTCATGCCACC 57.450 47.619 0.00 0.00 39.27 4.61
1834 2391 4.697352 ACAAAGACTTATCTGTCATGCCAC 59.303 41.667 0.00 0.00 39.27 5.01
1835 2392 4.910195 ACAAAGACTTATCTGTCATGCCA 58.090 39.130 0.00 0.00 39.27 4.92
1836 2393 5.886960 AACAAAGACTTATCTGTCATGCC 57.113 39.130 0.00 0.00 39.27 4.40
1837 2394 7.978982 ACATAACAAAGACTTATCTGTCATGC 58.021 34.615 2.70 0.00 39.27 4.06
1838 2395 8.323854 CGACATAACAAAGACTTATCTGTCATG 58.676 37.037 12.69 7.93 39.27 3.07
1839 2396 8.251026 TCGACATAACAAAGACTTATCTGTCAT 58.749 33.333 12.69 0.00 39.27 3.06
1840 2397 7.599171 TCGACATAACAAAGACTTATCTGTCA 58.401 34.615 12.69 0.00 39.27 3.58
1841 2398 8.635877 ATCGACATAACAAAGACTTATCTGTC 57.364 34.615 0.00 0.00 34.48 3.51
1842 2399 8.873830 CAATCGACATAACAAAGACTTATCTGT 58.126 33.333 0.00 0.00 34.48 3.41
1843 2400 7.848051 GCAATCGACATAACAAAGACTTATCTG 59.152 37.037 0.00 0.00 34.48 2.90
1844 2401 7.766278 AGCAATCGACATAACAAAGACTTATCT 59.234 33.333 0.00 0.00 36.42 1.98
1845 2402 7.910304 AGCAATCGACATAACAAAGACTTATC 58.090 34.615 0.00 0.00 0.00 1.75
1846 2403 7.849804 AGCAATCGACATAACAAAGACTTAT 57.150 32.000 0.00 0.00 0.00 1.73
1847 2404 7.667043 AAGCAATCGACATAACAAAGACTTA 57.333 32.000 0.00 0.00 0.00 2.24
1848 2405 6.560253 AAGCAATCGACATAACAAAGACTT 57.440 33.333 0.00 0.00 0.00 3.01
1849 2406 7.667043 TTAAGCAATCGACATAACAAAGACT 57.333 32.000 0.00 0.00 0.00 3.24
1850 2407 8.015658 ACTTTAAGCAATCGACATAACAAAGAC 58.984 33.333 12.56 0.00 0.00 3.01
1851 2408 8.094798 ACTTTAAGCAATCGACATAACAAAGA 57.905 30.769 12.56 0.00 0.00 2.52
1852 2409 9.988350 ATACTTTAAGCAATCGACATAACAAAG 57.012 29.630 0.00 0.00 0.00 2.77
1859 2416 9.640963 GGTAGATATACTTTAAGCAATCGACAT 57.359 33.333 12.87 0.00 0.00 3.06
1860 2417 8.086522 GGGTAGATATACTTTAAGCAATCGACA 58.913 37.037 12.87 0.00 0.00 4.35
1861 2418 8.305317 AGGGTAGATATACTTTAAGCAATCGAC 58.695 37.037 0.00 0.14 0.00 4.20
1862 2419 8.418597 AGGGTAGATATACTTTAAGCAATCGA 57.581 34.615 0.00 0.00 0.00 3.59
1863 2420 9.141400 GAAGGGTAGATATACTTTAAGCAATCG 57.859 37.037 0.00 0.00 0.00 3.34
1864 2421 9.438228 GGAAGGGTAGATATACTTTAAGCAATC 57.562 37.037 0.00 0.00 0.00 2.67
1865 2422 8.945193 TGGAAGGGTAGATATACTTTAAGCAAT 58.055 33.333 0.00 0.00 0.00 3.56
1866 2423 8.326765 TGGAAGGGTAGATATACTTTAAGCAA 57.673 34.615 0.00 0.00 0.00 3.91
1867 2424 7.924358 TGGAAGGGTAGATATACTTTAAGCA 57.076 36.000 0.00 0.00 0.00 3.91
1868 2425 8.594550 TCATGGAAGGGTAGATATACTTTAAGC 58.405 37.037 0.00 0.00 0.00 3.09
1870 2427 9.670442 ACTCATGGAAGGGTAGATATACTTTAA 57.330 33.333 0.00 0.00 0.00 1.52
1871 2428 9.670442 AACTCATGGAAGGGTAGATATACTTTA 57.330 33.333 0.00 0.00 0.00 1.85
1872 2429 8.432805 CAACTCATGGAAGGGTAGATATACTTT 58.567 37.037 0.00 0.00 0.00 2.66
1873 2430 7.569111 ACAACTCATGGAAGGGTAGATATACTT 59.431 37.037 0.00 0.00 0.00 2.24
1874 2431 7.076446 ACAACTCATGGAAGGGTAGATATACT 58.924 38.462 0.00 0.00 0.00 2.12
1875 2432 7.304497 ACAACTCATGGAAGGGTAGATATAC 57.696 40.000 0.00 0.00 0.00 1.47
1876 2433 7.347222 ACAACAACTCATGGAAGGGTAGATATA 59.653 37.037 0.00 0.00 0.00 0.86
1877 2434 6.158695 ACAACAACTCATGGAAGGGTAGATAT 59.841 38.462 0.00 0.00 0.00 1.63
1878 2435 5.487488 ACAACAACTCATGGAAGGGTAGATA 59.513 40.000 0.00 0.00 0.00 1.98
1879 2436 4.289672 ACAACAACTCATGGAAGGGTAGAT 59.710 41.667 0.00 0.00 0.00 1.98
1880 2437 3.650942 ACAACAACTCATGGAAGGGTAGA 59.349 43.478 0.00 0.00 0.00 2.59
1881 2438 4.003648 GACAACAACTCATGGAAGGGTAG 58.996 47.826 0.00 0.00 0.00 3.18
1882 2439 3.392947 TGACAACAACTCATGGAAGGGTA 59.607 43.478 0.00 0.00 0.00 3.69
1883 2440 2.174639 TGACAACAACTCATGGAAGGGT 59.825 45.455 0.00 0.00 0.00 4.34
1884 2441 2.862541 TGACAACAACTCATGGAAGGG 58.137 47.619 0.00 0.00 0.00 3.95
1885 2442 5.458041 AATTGACAACAACTCATGGAAGG 57.542 39.130 0.00 0.00 38.90 3.46
1886 2443 7.086376 CCTTAATTGACAACAACTCATGGAAG 58.914 38.462 0.00 0.00 38.90 3.46
1887 2444 6.015519 CCCTTAATTGACAACAACTCATGGAA 60.016 38.462 0.00 0.00 38.90 3.53
1888 2445 5.476599 CCCTTAATTGACAACAACTCATGGA 59.523 40.000 0.00 0.00 38.90 3.41
1889 2446 5.713025 CCCTTAATTGACAACAACTCATGG 58.287 41.667 0.00 0.00 38.90 3.66
1890 2447 5.163513 GCCCTTAATTGACAACAACTCATG 58.836 41.667 0.00 0.00 38.90 3.07
1891 2448 4.832266 TGCCCTTAATTGACAACAACTCAT 59.168 37.500 0.00 0.00 38.90 2.90
1892 2449 4.211125 TGCCCTTAATTGACAACAACTCA 58.789 39.130 0.00 0.00 38.90 3.41
1893 2450 4.846779 TGCCCTTAATTGACAACAACTC 57.153 40.909 0.00 0.00 38.90 3.01
1894 2451 5.079643 AGATGCCCTTAATTGACAACAACT 58.920 37.500 0.00 0.00 38.90 3.16
1895 2452 5.391312 AGATGCCCTTAATTGACAACAAC 57.609 39.130 0.00 0.00 38.90 3.32
1896 2453 4.462483 GGAGATGCCCTTAATTGACAACAA 59.538 41.667 0.00 0.00 40.42 2.83
1897 2454 4.016444 GGAGATGCCCTTAATTGACAACA 58.984 43.478 0.00 0.00 0.00 3.33
1898 2455 4.016444 TGGAGATGCCCTTAATTGACAAC 58.984 43.478 0.00 0.00 34.97 3.32
1899 2456 4.314522 TGGAGATGCCCTTAATTGACAA 57.685 40.909 0.00 0.00 34.97 3.18
1900 2457 4.016444 GTTGGAGATGCCCTTAATTGACA 58.984 43.478 0.00 0.00 34.97 3.58
1901 2458 3.381590 GGTTGGAGATGCCCTTAATTGAC 59.618 47.826 0.00 0.00 34.97 3.18
1902 2459 3.011144 TGGTTGGAGATGCCCTTAATTGA 59.989 43.478 0.00 0.00 34.97 2.57
1903 2460 3.364549 TGGTTGGAGATGCCCTTAATTG 58.635 45.455 0.00 0.00 34.97 2.32
1904 2461 3.011708 ACTGGTTGGAGATGCCCTTAATT 59.988 43.478 0.00 0.00 34.97 1.40
1905 2462 2.582636 ACTGGTTGGAGATGCCCTTAAT 59.417 45.455 0.00 0.00 34.97 1.40
1906 2463 1.992557 ACTGGTTGGAGATGCCCTTAA 59.007 47.619 0.00 0.00 34.97 1.85
1907 2464 1.281867 CACTGGTTGGAGATGCCCTTA 59.718 52.381 0.00 0.00 34.97 2.69
1908 2465 0.038744 CACTGGTTGGAGATGCCCTT 59.961 55.000 0.00 0.00 34.97 3.95
1909 2466 1.687612 CACTGGTTGGAGATGCCCT 59.312 57.895 0.00 0.00 34.97 5.19
1910 2467 4.326255 CACTGGTTGGAGATGCCC 57.674 61.111 0.00 0.00 34.97 5.36
1919 2476 1.207089 TCCTAGATTCGCCACTGGTTG 59.793 52.381 0.00 0.00 0.00 3.77
1920 2477 1.482593 CTCCTAGATTCGCCACTGGTT 59.517 52.381 0.00 0.00 0.00 3.67
1921 2478 1.115467 CTCCTAGATTCGCCACTGGT 58.885 55.000 0.00 0.00 0.00 4.00
1922 2479 0.390860 CCTCCTAGATTCGCCACTGG 59.609 60.000 0.00 0.00 0.00 4.00
1923 2480 1.403814 TCCTCCTAGATTCGCCACTG 58.596 55.000 0.00 0.00 0.00 3.66
1924 2481 2.160721 TTCCTCCTAGATTCGCCACT 57.839 50.000 0.00 0.00 0.00 4.00
1925 2482 2.827652 CTTTCCTCCTAGATTCGCCAC 58.172 52.381 0.00 0.00 0.00 5.01
1926 2483 1.139058 GCTTTCCTCCTAGATTCGCCA 59.861 52.381 0.00 0.00 0.00 5.69
1927 2484 1.870167 CGCTTTCCTCCTAGATTCGCC 60.870 57.143 0.00 0.00 0.00 5.54
1928 2485 1.067212 TCGCTTTCCTCCTAGATTCGC 59.933 52.381 0.00 0.00 0.00 4.70
1929 2486 3.376540 CTTCGCTTTCCTCCTAGATTCG 58.623 50.000 0.00 0.00 0.00 3.34
1930 2487 3.493524 CCCTTCGCTTTCCTCCTAGATTC 60.494 52.174 0.00 0.00 0.00 2.52
1931 2488 2.436173 CCCTTCGCTTTCCTCCTAGATT 59.564 50.000 0.00 0.00 0.00 2.40
1932 2489 2.043227 CCCTTCGCTTTCCTCCTAGAT 58.957 52.381 0.00 0.00 0.00 1.98
1933 2490 1.273098 ACCCTTCGCTTTCCTCCTAGA 60.273 52.381 0.00 0.00 0.00 2.43
1934 2491 1.134670 CACCCTTCGCTTTCCTCCTAG 60.135 57.143 0.00 0.00 0.00 3.02
1935 2492 0.902531 CACCCTTCGCTTTCCTCCTA 59.097 55.000 0.00 0.00 0.00 2.94
1936 2493 1.679898 CACCCTTCGCTTTCCTCCT 59.320 57.895 0.00 0.00 0.00 3.69
1937 2494 1.377333 CCACCCTTCGCTTTCCTCC 60.377 63.158 0.00 0.00 0.00 4.30
1938 2495 1.377333 CCCACCCTTCGCTTTCCTC 60.377 63.158 0.00 0.00 0.00 3.71
1939 2496 2.757077 CCCACCCTTCGCTTTCCT 59.243 61.111 0.00 0.00 0.00 3.36
1940 2497 3.062466 GCCCACCCTTCGCTTTCC 61.062 66.667 0.00 0.00 0.00 3.13
1941 2498 2.034221 AGCCCACCCTTCGCTTTC 59.966 61.111 0.00 0.00 0.00 2.62
1942 2499 2.034221 GAGCCCACCCTTCGCTTT 59.966 61.111 0.00 0.00 31.61 3.51
1943 2500 2.142292 ATTGAGCCCACCCTTCGCTT 62.142 55.000 0.00 0.00 31.61 4.68
1944 2501 2.142292 AATTGAGCCCACCCTTCGCT 62.142 55.000 0.00 0.00 34.97 4.93
1945 2502 1.250840 AAATTGAGCCCACCCTTCGC 61.251 55.000 0.00 0.00 0.00 4.70
1946 2503 2.122783 TAAATTGAGCCCACCCTTCG 57.877 50.000 0.00 0.00 0.00 3.79
1947 2504 3.161866 TGTTAAATTGAGCCCACCCTTC 58.838 45.455 0.00 0.00 0.00 3.46
1948 2505 3.165071 CTGTTAAATTGAGCCCACCCTT 58.835 45.455 0.00 0.00 0.00 3.95
1949 2506 2.807676 CTGTTAAATTGAGCCCACCCT 58.192 47.619 0.00 0.00 0.00 4.34
1950 2507 1.204704 GCTGTTAAATTGAGCCCACCC 59.795 52.381 0.00 0.00 0.00 4.61
1951 2508 1.135402 CGCTGTTAAATTGAGCCCACC 60.135 52.381 0.00 0.00 0.00 4.61
1952 2509 1.810151 TCGCTGTTAAATTGAGCCCAC 59.190 47.619 0.00 0.00 0.00 4.61
1953 2510 2.083774 CTCGCTGTTAAATTGAGCCCA 58.916 47.619 0.00 0.00 0.00 5.36
1954 2511 2.356135 TCTCGCTGTTAAATTGAGCCC 58.644 47.619 0.00 0.00 0.00 5.19
1955 2512 3.684788 TCTTCTCGCTGTTAAATTGAGCC 59.315 43.478 0.00 0.00 0.00 4.70
1956 2513 4.928661 TCTTCTCGCTGTTAAATTGAGC 57.071 40.909 0.00 0.00 0.00 4.26
1957 2514 9.994432 ATTTAATCTTCTCGCTGTTAAATTGAG 57.006 29.630 0.00 0.00 33.53 3.02
1958 2515 9.773328 CATTTAATCTTCTCGCTGTTAAATTGA 57.227 29.630 0.00 0.00 34.50 2.57
1959 2516 8.526681 GCATTTAATCTTCTCGCTGTTAAATTG 58.473 33.333 0.00 0.00 34.50 2.32
1960 2517 7.702348 GGCATTTAATCTTCTCGCTGTTAAATT 59.298 33.333 0.00 0.00 34.50 1.82
1961 2518 7.148086 TGGCATTTAATCTTCTCGCTGTTAAAT 60.148 33.333 0.00 0.00 36.13 1.40
1962 2519 6.150307 TGGCATTTAATCTTCTCGCTGTTAAA 59.850 34.615 0.00 0.00 0.00 1.52
1963 2520 5.645929 TGGCATTTAATCTTCTCGCTGTTAA 59.354 36.000 0.00 0.00 0.00 2.01
1964 2521 5.182487 TGGCATTTAATCTTCTCGCTGTTA 58.818 37.500 0.00 0.00 0.00 2.41
1965 2522 4.009675 TGGCATTTAATCTTCTCGCTGTT 58.990 39.130 0.00 0.00 0.00 3.16
1966 2523 3.609853 TGGCATTTAATCTTCTCGCTGT 58.390 40.909 0.00 0.00 0.00 4.40
1967 2524 4.825546 ATGGCATTTAATCTTCTCGCTG 57.174 40.909 0.00 0.00 0.00 5.18
1968 2525 5.841957 AAATGGCATTTAATCTTCTCGCT 57.158 34.783 23.23 0.00 0.00 4.93
1969 2526 6.035843 TCAAAATGGCATTTAATCTTCTCGC 58.964 36.000 24.58 0.00 0.00 5.03
1970 2527 7.970061 TCTTCAAAATGGCATTTAATCTTCTCG 59.030 33.333 24.58 7.82 0.00 4.04
1971 2528 9.298774 CTCTTCAAAATGGCATTTAATCTTCTC 57.701 33.333 24.58 0.00 0.00 2.87
1972 2529 9.028284 TCTCTTCAAAATGGCATTTAATCTTCT 57.972 29.630 24.58 5.60 0.00 2.85
1973 2530 9.643693 TTCTCTTCAAAATGGCATTTAATCTTC 57.356 29.630 24.58 0.00 0.00 2.87
1977 2534 9.223099 CCTTTTCTCTTCAAAATGGCATTTAAT 57.777 29.630 24.58 8.55 0.00 1.40
1978 2535 7.661027 CCCTTTTCTCTTCAAAATGGCATTTAA 59.339 33.333 24.58 15.34 32.38 1.52
1979 2536 7.160726 CCCTTTTCTCTTCAAAATGGCATTTA 58.839 34.615 24.58 8.55 32.38 1.40
1980 2537 5.999600 CCCTTTTCTCTTCAAAATGGCATTT 59.000 36.000 19.39 19.39 32.38 2.32
1981 2538 5.554070 CCCTTTTCTCTTCAAAATGGCATT 58.446 37.500 6.96 6.96 32.38 3.56
1982 2539 5.156608 CCCTTTTCTCTTCAAAATGGCAT 57.843 39.130 0.00 0.00 32.38 4.40
1983 2540 4.605640 CCCTTTTCTCTTCAAAATGGCA 57.394 40.909 0.00 0.00 32.38 4.92
1984 2541 3.329386 GCCCTTTTCTCTTCAAAATGGC 58.671 45.455 8.57 8.57 44.57 4.40
1985 2542 4.605640 TGCCCTTTTCTCTTCAAAATGG 57.394 40.909 0.00 0.00 35.32 3.16
1986 2543 8.606040 TTTAATGCCCTTTTCTCTTCAAAATG 57.394 30.769 0.00 0.00 0.00 2.32
1987 2544 9.223099 CATTTAATGCCCTTTTCTCTTCAAAAT 57.777 29.630 0.00 0.00 0.00 1.82
1988 2545 8.606040 CATTTAATGCCCTTTTCTCTTCAAAA 57.394 30.769 0.00 0.00 0.00 2.44
2005 2562 9.434420 TTTGGACAAAAGGATTAGCATTTAATG 57.566 29.630 0.00 0.00 29.05 1.90
2009 2566 9.657419 CTTATTTGGACAAAAGGATTAGCATTT 57.343 29.630 1.17 0.00 33.56 2.32
2010 2567 7.765819 GCTTATTTGGACAAAAGGATTAGCATT 59.234 33.333 1.17 0.00 33.56 3.56
2011 2568 7.124750 AGCTTATTTGGACAAAAGGATTAGCAT 59.875 33.333 1.17 0.00 33.56 3.79
2012 2569 6.437162 AGCTTATTTGGACAAAAGGATTAGCA 59.563 34.615 1.17 0.00 33.56 3.49
2013 2570 6.867550 AGCTTATTTGGACAAAAGGATTAGC 58.132 36.000 1.17 1.17 33.56 3.09
2015 2572 9.747898 TCTTAGCTTATTTGGACAAAAGGATTA 57.252 29.630 1.17 0.00 33.56 1.75
2016 2573 8.650143 TCTTAGCTTATTTGGACAAAAGGATT 57.350 30.769 1.17 0.00 33.56 3.01
2017 2574 8.829373 ATCTTAGCTTATTTGGACAAAAGGAT 57.171 30.769 1.17 0.00 33.56 3.24
2018 2575 8.650143 AATCTTAGCTTATTTGGACAAAAGGA 57.350 30.769 1.17 0.00 33.56 3.36
2019 2576 9.710900 AAAATCTTAGCTTATTTGGACAAAAGG 57.289 29.630 1.17 0.00 33.56 3.11
2021 2578 8.987890 GCAAAATCTTAGCTTATTTGGACAAAA 58.012 29.630 1.17 0.00 33.56 2.44
2022 2579 7.602265 GGCAAAATCTTAGCTTATTTGGACAAA 59.398 33.333 0.00 0.00 32.91 2.83
2023 2580 7.096551 GGCAAAATCTTAGCTTATTTGGACAA 58.903 34.615 0.00 0.00 32.91 3.18
2024 2581 6.350949 GGGCAAAATCTTAGCTTATTTGGACA 60.351 38.462 9.90 0.00 32.91 4.02
2025 2582 6.042777 GGGCAAAATCTTAGCTTATTTGGAC 58.957 40.000 0.00 0.00 32.91 4.02
2026 2583 5.163561 CGGGCAAAATCTTAGCTTATTTGGA 60.164 40.000 0.00 0.00 32.91 3.53
2027 2584 5.043248 CGGGCAAAATCTTAGCTTATTTGG 58.957 41.667 0.00 0.00 32.91 3.28
2028 2585 5.890334 TCGGGCAAAATCTTAGCTTATTTG 58.110 37.500 0.00 0.00 34.84 2.32
2029 2586 6.524101 TTCGGGCAAAATCTTAGCTTATTT 57.476 33.333 0.00 0.00 0.00 1.40
2030 2587 6.715347 ATTCGGGCAAAATCTTAGCTTATT 57.285 33.333 0.00 0.00 0.00 1.40
2031 2588 6.998673 AGTATTCGGGCAAAATCTTAGCTTAT 59.001 34.615 0.00 0.00 0.00 1.73
2032 2589 6.260050 CAGTATTCGGGCAAAATCTTAGCTTA 59.740 38.462 0.00 0.00 0.00 3.09
2033 2590 5.066505 CAGTATTCGGGCAAAATCTTAGCTT 59.933 40.000 0.00 0.00 0.00 3.74
2034 2591 4.576463 CAGTATTCGGGCAAAATCTTAGCT 59.424 41.667 0.00 0.00 0.00 3.32
2035 2592 4.335594 ACAGTATTCGGGCAAAATCTTAGC 59.664 41.667 0.00 0.00 0.00 3.09
2036 2593 5.584649 TGACAGTATTCGGGCAAAATCTTAG 59.415 40.000 0.00 0.00 0.00 2.18
2037 2594 5.492895 TGACAGTATTCGGGCAAAATCTTA 58.507 37.500 0.00 0.00 0.00 2.10
2038 2595 4.331968 TGACAGTATTCGGGCAAAATCTT 58.668 39.130 0.00 0.00 0.00 2.40
2039 2596 3.950397 TGACAGTATTCGGGCAAAATCT 58.050 40.909 0.00 0.00 0.00 2.40
2040 2597 4.900635 ATGACAGTATTCGGGCAAAATC 57.099 40.909 0.00 0.00 29.47 2.17
2041 2598 5.659440 AAATGACAGTATTCGGGCAAAAT 57.341 34.783 0.00 0.00 29.47 1.82
2042 2599 5.461032 AAAATGACAGTATTCGGGCAAAA 57.539 34.783 0.00 0.00 29.47 2.44
2043 2600 6.405286 CCATAAAATGACAGTATTCGGGCAAA 60.405 38.462 0.00 0.00 29.47 3.68
2044 2601 5.067153 CCATAAAATGACAGTATTCGGGCAA 59.933 40.000 0.00 0.00 29.47 4.52
2045 2602 4.578516 CCATAAAATGACAGTATTCGGGCA 59.421 41.667 0.00 0.00 0.00 5.36
2046 2603 4.578928 ACCATAAAATGACAGTATTCGGGC 59.421 41.667 0.00 0.00 0.00 6.13
2047 2604 6.693315 AACCATAAAATGACAGTATTCGGG 57.307 37.500 0.00 0.00 0.00 5.14
2048 2605 8.458843 AGAAAACCATAAAATGACAGTATTCGG 58.541 33.333 0.00 0.00 0.00 4.30
2049 2606 9.840427 AAGAAAACCATAAAATGACAGTATTCG 57.160 29.630 0.00 0.00 0.00 3.34
2109 2666 9.191479 CGGGAGATAATGACTATTTAGGTAGAT 57.809 37.037 0.00 0.00 0.00 1.98
2110 2667 7.614583 CCGGGAGATAATGACTATTTAGGTAGA 59.385 40.741 0.00 0.00 0.00 2.59
2111 2668 7.396623 ACCGGGAGATAATGACTATTTAGGTAG 59.603 40.741 6.32 0.00 0.00 3.18
2112 2669 7.243824 ACCGGGAGATAATGACTATTTAGGTA 58.756 38.462 6.32 0.00 0.00 3.08
2113 2670 6.082707 ACCGGGAGATAATGACTATTTAGGT 58.917 40.000 6.32 0.00 0.00 3.08
2114 2671 6.351117 GGACCGGGAGATAATGACTATTTAGG 60.351 46.154 6.32 0.00 0.00 2.69
2115 2672 6.437793 AGGACCGGGAGATAATGACTATTTAG 59.562 42.308 6.32 0.00 0.00 1.85
2116 2673 6.320518 AGGACCGGGAGATAATGACTATTTA 58.679 40.000 6.32 0.00 0.00 1.40
2117 2674 5.155905 AGGACCGGGAGATAATGACTATTT 58.844 41.667 6.32 0.00 0.00 1.40
2118 2675 4.753186 AGGACCGGGAGATAATGACTATT 58.247 43.478 6.32 0.00 0.00 1.73
2119 2676 4.405756 AGGACCGGGAGATAATGACTAT 57.594 45.455 6.32 0.00 0.00 2.12
2120 2677 3.897657 AGGACCGGGAGATAATGACTA 57.102 47.619 6.32 0.00 0.00 2.59
2121 2678 2.777459 AGGACCGGGAGATAATGACT 57.223 50.000 6.32 0.00 0.00 3.41
2122 2679 3.729966 GAAAGGACCGGGAGATAATGAC 58.270 50.000 6.32 0.00 0.00 3.06
2123 2680 2.364324 CGAAAGGACCGGGAGATAATGA 59.636 50.000 6.32 0.00 0.00 2.57
2124 2681 2.755650 CGAAAGGACCGGGAGATAATG 58.244 52.381 6.32 0.00 0.00 1.90
2125 2682 1.070289 GCGAAAGGACCGGGAGATAAT 59.930 52.381 6.32 0.00 0.00 1.28
2126 2683 0.462789 GCGAAAGGACCGGGAGATAA 59.537 55.000 6.32 0.00 0.00 1.75
2127 2684 0.396695 AGCGAAAGGACCGGGAGATA 60.397 55.000 6.32 0.00 0.00 1.98
2128 2685 1.265454 AAGCGAAAGGACCGGGAGAT 61.265 55.000 6.32 0.00 0.00 2.75
2129 2686 1.885163 GAAGCGAAAGGACCGGGAGA 61.885 60.000 6.32 0.00 0.00 3.71
2130 2687 1.448013 GAAGCGAAAGGACCGGGAG 60.448 63.158 6.32 0.00 0.00 4.30
2131 2688 1.760479 TTGAAGCGAAAGGACCGGGA 61.760 55.000 6.32 0.00 0.00 5.14
2132 2689 0.887387 TTTGAAGCGAAAGGACCGGG 60.887 55.000 6.32 0.00 0.00 5.73
2133 2690 0.237498 GTTTGAAGCGAAAGGACCGG 59.763 55.000 0.00 0.00 0.00 5.28
2134 2691 0.941542 TGTTTGAAGCGAAAGGACCG 59.058 50.000 0.00 0.00 0.00 4.79
2135 2692 2.858646 GCTTGTTTGAAGCGAAAGGACC 60.859 50.000 0.00 0.00 33.20 4.46
2136 2693 2.385315 GCTTGTTTGAAGCGAAAGGAC 58.615 47.619 0.00 0.00 33.20 3.85
2137 2694 2.774439 GCTTGTTTGAAGCGAAAGGA 57.226 45.000 0.00 0.00 33.20 3.36
2144 2701 5.105063 AGAAAGTTTCAGCTTGTTTGAAGC 58.895 37.500 17.65 0.00 43.31 3.86
2145 2702 8.184192 TCTAAGAAAGTTTCAGCTTGTTTGAAG 58.816 33.333 17.65 0.00 36.07 3.02
2146 2703 8.050778 TCTAAGAAAGTTTCAGCTTGTTTGAA 57.949 30.769 17.65 0.00 33.00 2.69
2147 2704 7.624360 TCTAAGAAAGTTTCAGCTTGTTTGA 57.376 32.000 17.65 5.88 0.00 2.69
2148 2705 8.862550 AATCTAAGAAAGTTTCAGCTTGTTTG 57.137 30.769 17.65 3.80 0.00 2.93
2149 2706 9.952188 GTAATCTAAGAAAGTTTCAGCTTGTTT 57.048 29.630 17.65 4.14 0.00 2.83
2150 2707 9.343539 AGTAATCTAAGAAAGTTTCAGCTTGTT 57.656 29.630 17.65 4.80 0.00 2.83
2151 2708 8.910351 AGTAATCTAAGAAAGTTTCAGCTTGT 57.090 30.769 17.65 1.91 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.