>input_sequence_86987
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----------------------------------------------ATGGCGAAGATCAAGCCAAAGGCATTGCTGGCAC
AGAGCAAACAGAAGAAGGGCCCTACTCAGATCGGCCTGTTGAGGATCATCACCTACATCGTCCTCGGCGCCCTAGCAGTG
TCCTCCGTTTACTATGCCTATCAGTACTGGCAGAGCAAAGGACCGGCCGTT------GCGGCAGCAGCAGCAGAAGGCGC
CGTGGGAAACTAA-------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G008300
TTCAGCATGCTGATTTCTATGGTGAAAGCACCGATTTTCTTATCTCTTCATTTCGGTGAGTGTTAAAGGACAGAAAAATG
TAAAAGACGACTGTGAGTCACATCGTTTGGTTGTGTGCTGGACATGACTTCCAGCACCGTGTGTAATGACCAGCTTTAAC
CCCAATCACTCTTACTGCTGGTTTACTGTTTTCTTCCTTATAAAAATCATCATAATATTTGTAAAGGCCATCATGTCAC-
-----GTGAGTTAACTAATTAAGTCAATCAACATAGAATTCAGCATCAAACCTACAAAGCCTCATTTATGTCATGATTTG
AAG---CATACACCACCTGCAATCTGAATTCTGAACATTCCATCTTCTCTAGTCTGTCATTCTATTTATGGTTTGACAAT
GGGTATGCCTCTGCTACCTATGTGTTGTATATCTCTATAATCTTACTACCAGTTTACGGTTTGTATCTTAGAGAGCATGA
CTTGTGAATGCCATCCTCCTACGTCATGAACGTTAACTAGTTATGTCAATCAACATGAAATTCAGTATCAAATCTACGAG
ACCTCATTTTTATGATTTGAAGCCGCAAAAACCACCTGCGATCTGAATTCCGATCATATCATCTTCTCTAGTCTGTCATT
ATATTTATGCTTTGACAATGGGTATGCCTCTGCTATCTAT--------------------GTGTTGTACATCTCTATAAT
CTTTGGATTTATACATTACTAATATTTCATTCAAGCCAAACCTTTGGATTCATACATTACAAGCATTTGCTTTGTTCGTC
TGACACATGGATGATGCAATATAACTGTGAGAACATTTTTGCGCAACCTAATGCTTGTAGTTATTCCTGATTGATATAAG
AAACCCAGCAGTT------------------------CATAAGCCTACTGTGCAGTTTATTACAC---------------
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-----------------GCCGAGCAAAAACGTTATGTTCAGGAAAAA-AATCATTGCAATGCTTCAGAATACCTTCGTGA
AACTTCTCTGTGCTGATTCTTTTCTTGGCATTACCAGAACTGAACCATGGCGAAGATCAAGCCAAAGGCATTGCTGGCAC
AGAGCAAACAGAAGAAGGGCCCTACTCAGATCGGCCTGTTGAGGATCATCACCTACATCGTCCTCGGCGCCCTAGCAGTG
TCCTCCGTTTACTATGCCTATCAGTACTGGCAGAGCAAAGGACCGGCCGTT------GCGGCAGCAGCAGCAGAAGGCGC
CGTGGGAAACTAAAGCCCCAGGAATGTAGTTGATTTTGCTGCTGTTGTTGTATTGTCTTGTCGTTTTTTTCTGGTGTTCG
CAGTCCGGTAAATTTGTGAAACATTGACAGAGCATGCGACGCTTAG----TCCCCCTGTAAATTGCCTTAACATTTATGC
TTATGTTTGTTTCTTTGACATGGAGTTTGCGGTAGCTCCATTGGTAGTGTTCTCTTCTGCTCAGATAAACATAT------
-----------------GTGGAACGTGCACGTTC----------------------------------------------
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-----------------TGAAGCTAGTGTTTCTCTTGTATTTTGGCTATGAGGTGGG-----------TTCAAAGACGCC
TCTAGACTTGGTGAGATTAGGTTCTAGTGGAAAA-------------------------------------------ATT
CTTAGCACCAAGTTTTGATCAACATTGGCCATGCTGTAAACCTGAAAGTGTTCCTCGATAGTTATAGAGAAGTTTCGGGT
CAATTTGTAAGCAAAAACAAATATGCAATTTTCTTCTGCAAGAACTGCGATGAAGTGATGAAGTAAGCTATGCCTCAGCT
CCGGCAATAGAAGCAGAGGACCTTGTGCAGAAGTATTTGTTTGCGGCTCCGTACAACTATAGGAAATTCCATGGCTACAG
CTTTTGAGCATGTACCATAAAAAAAAATACGTTGTTAATGGGCGATCTGCCAAGAAACTTGGTTGAGCTGGTGGCATGAC
AGATAAGTCTTTGTTATGTCGATTGCTTAAAGTATATCTACCCTTCCATGAGTTGTTGTCAATTAAGGGCATCTCCAACC
AGTGGCGAATCTAGGAGGAAAGCGAAGGGTGGGCTCAATTTAACAGCGAGAAGATTAAATGCCATTTTGAAGAGAAAAGG
GCATTAAATGCTAATCCTTTTGTCCAAATAAGCTAAGATTTTGCCCGAATACTGTCATTTTATGGTTTTCTTTTAATATC
AAATTTTGAACGGAAATTTAAATCTATCTACCTAAATAGTCATTATCTCCCGGTCCTTTCGCTTCAAACAAGCTGAAACT
TTCTTAGATTACTACTAGAAACATATATCATTTGCTA
>chr3B_1
TTCAGCATGCTGATTTCTATGGTGAAAGCACCGATTTTCTTACCTCTTCATTTCGGTGAGTGTTAAAGGACAGAAAA-TG
TAATAGAGAACTGTGAGTCACATCGCTTGGGTGTGCGCAGGACATGACTTCCAGCACCCTAAGTAATGATCAGCTTTAAC
CCCAATCACTTTTACTACTGGTTTACTGTTTCCTATCTTAAATAGCATAATA----ATTTGTAAAAGCCATCCTCCTATG
TCATTGTAAGTTAACAAGTTTAGTCAATCAACATAGAATTCAACA----------------TCATTTATGTTATGATTTG
AGGCCACGTACACCACCTGCAATCTGAATTCTCAACATTCCATCTTCTCTATTCTGTCATTATATTTCTGCTATGACAAT
GGGTATGCCTCTGCTACCTATGTGTTGTACAACTCTATAATCTTACTACTAGTTTACAATTTGTATCTTAGAGACCATGA
TTTGTGAATGTCATCCTCCAATGTCATCAACTTTAACTACTCAAGTCAATCAACATGGATTAAGTACCCATC--TATGAG
ATCTCATTTTTATGATTTGAAGCCGCAAACACCACCTGCAATGTGAATTCAGATCATATCATCTTGTCTGGTCTGTTATT
ATATTTATGTTATGACACTGGGTGTGTCTCTGCTATCTAT--------------------GTGTA-TACATCTGTATAAT
CTTTGGATTCATACATTACTGGCATCTCTTTCAAGCCAAACCTTTGATTTCATACATTACTAGCATTTGCTTTGTTCATC
TGACACATGGACGATGCAATCTAACTGTGAGAACATTTTTGCGCAACCTAATGCTTGCAGCTATTCCTGACTGGTATAAG
AAACCCAGCAGTTTCAGAAAAAAAAATACTTGATGTGCATAAGCATACTGTGCAGTTTATTACATGCCGAGCAAAAACGT
TAAAAAAAAAAAGGACAGACCCAGTGCATAGAAGCTCCCACACAAGGTGGGGTCTGGGGAGGGATTATAGGAACCTAGTC
TTACCCCTGCAAAGTGCAATGCAGAGAGGCTGGTTCGAACCCAGGACCTCTTGGCACAAGTGGGGAGGACTTCACCACTG
CGCCAGGCCTGCCCTCTGCCGAGCAAAAACGTTATGTTCAGCAAAAACAATCATTGCAAAGCTTTAATATACCTTTTA-A
AACA--TCTTTGCTGATTCTTTTCTTGGCATTACCAGAACTGAACCATGGCGAAGATCAAGCCAAAGGCATTGCTGGCAC
AGAGCAAACAGAAGAAGGGCCCTACTCAGATCGGCTTGGTGAGGATCATCACCTACATCGTCCTCGGCGCCCTAGCAGTG
TCCTCCGTCTACTATGCCTATCAGTACTGGCAGAGCAAAGGACCGGCCGTT------GCGGCAGCAGCAGCAGAAGGCGC
TGTGGGGAACTAAGA-CCCAGGAATGTTGTTGATTTCGCTGCTGTTGTTGTGTTGTGTTGTCGGTTTTTTCTGGTGTTCG
CGGTCCGGTAAATTTGTGATACATTGACAGAGCACGCCACTACTAG----TCCCCCTGTAAATTGTCTTAACATTTATAC
TTATGTTTCTTTCTTTGACATGGAGTTTGTGGTGGCTCCATTGGTAGTGTTCTCTTCTGCTCAGATAAACATACCAGGGC
ACAAAAACTCTTCCCAGGTGGAACGTGCACGCCCTTTTTTTTTTTAACACAGTATAGATGCAAGTGCTCATATACACGCG
CATACACTCACCCCTATGAACGCACACACGCACAACCTACCCCTATGAGCAGCTCATAAAGACTGAGCCGGCATATCATC
TTGATATTTACGAAGTCATCATAGGCATCTTCATTGTCGACGAGAACGTCTCCTCTAACCATCCAACTACAAGCTGGTTC
GCGGAACGTGCACATCATGAAGCTAGTGTTTCTCTTGTATTCTGCCTATGAGGTGGGCCCAAATAAGGTTCAAAGACGCC
TCTAGACTTGGTGAGATTAGGTTCTAGTGGAAAAATTCTTCGCACCTCACTCCACAATGTTTAGCACCAACAACAAGATT
CTTAGCACCAAGTTTTGACCAACATTGGCCATGCTGTACAACTGAAAATGTTCCTCGATAGTTATAGAGAATTC-CGGGT
CAATTTGTAAGCAAAAACAAGCATGCAATGTTCTTCTGCAAGAACA-----------ATGAAGTAGGCTATGCCTCTGCT
CCGGCAATAGAAGCAGAGGACCTTGTGCAGAAG-----------------------------------------------
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>chrUn_307
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------------------------------------------------------------------------ATGATTTG
AAGGCACAGACACCACCTGCCATCTGAATTCTGAATGTTCCATCTCTTCTAGCCTGTCATTTTATTTATGCCATGGCAAT
GGGTATGCCTCTGCTACCTATGTGCTGTACAGCTCTAT-ATCTTACTACTGGTTTGCGGTTTGTATCTTAGAGACCATGA
TTTGTGAATGACATCCTCCTATGTCATGAACATTAACTAGTTAAGTGAATCAGCATGGAATTCAGTATCAAATGTATGAG
ACCTCATTTTTATGATTTGAAGCCGCAAGCACCACCTGCAATCTGAATTCTGATCATATCACCTTCTCTAGTCTGTCATT
ATATTTATGTCATGACACTGGGTGTGCCTCTGCTAATGCCCAGGGCTATCTGCGATCTACGTGTTGTACATCTCGATAAT
CTTTGGATTCATACATTATTAGTATATCTTTCAAGCCAAACCTTTGGATTCATACATTACTAGCATTTGCTATGT-----
TGACACATGGACGATGCAATATAACTGTGAGAGCATTTTTGTGCAGCCTAATGCTTGTAGTTATTTCTGACTGTTGTAAG
AAACCCACCAGTTTAAGAAAAAAATG----TGTTGTTCATAGGCATACAGTGCAGTTTATTACACGCCA-----------
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---------------------AGCAAAAATGTTATGTTCAGCAAAAA-GATCATTGCAATGCTTTAATATACCTTTTA-A
AACTTCTCTATGCTGATTCTTCTCTTGGCATTACCAGAGCTGAACAATGGCGAAGATCAAGCCAAAGGCATTGCTGGCAC
AGAGCAAGCAGAAGAAGGGCCCTACTCAGATCGGCCTGGTGAGGATCATCACCTACATCGTCCTCGGCGCCCTAGCAGTG
TCCTCCGTTTACTATGCCTATCAGTACTGGCAGAGCAAAGGAGCGGCCGTTGCGGCAGCAGCAGGAGCAGCAGAAGGCGT
CGTGGGGAACTAAAGCCCCAGGAACGTAGTTGATTTTGCTGCTGTTGTTGTATTGTCTTGTCAGTTTTTTCTGGTTGTCG
CAGTCCGGTAAATTTGTGGAACATTGACAGAGCATGCGACGCTTAGTGTATCCCCCTGTAAATTGCCTTAACATTTATGC
TTATATTTCCTTCTTCGACATGGAGTTC-CGGTTGTTCAGTTGATAGTGTACTCCTCTGCT-------------------
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>SNPs
------------------------------------------S----------------------------------S--
---S---SS----------------S----S----S--S-------------------S-SS-------S----------
----------S-----S--------------S--SS----S-S-SSSS-SS-SSSS---------S------S-SSS-S-
-------S-------S-S--S---------------------S--SSSSSSSSSSSSSSSS----------S--------
-------------------------------------------------------------S--------S-S-------
-----------------------------S-S-----------------S------------------------S-----
S---------S----------S---------S-----------S-------------S---------------S--S---
-----------------------------S---------S----------S-----------------------------
---------S-S-----S-----S--------------------------------------------------------
---------S-----------S---S--S-------------------------------S----------------S--
-----------S----------------------------------------------------------S--S------
--------------------------------------------S-----------------------------------
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-----------------------------------------S----------------------S-SS-------SSSS-
---------S----------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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------S--------------------------------------------------------S----------------
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--------S------------------------S---------------------------------------S------
-------------------------------SS-----------------------------------------------
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-----------------------------------------S--S-----------------------------------
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------------------S-------------------S-S------S-----------------------S-SS-----
--------------------SS-------S---------------SSSSSSSSSSSS--------S----------S---
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_141
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-----------------------------------------ACATGACTTCCAGCACCGTG-------------------
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>reverse_2465
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----------------------------------------------------------------AAGGGCATCTCCAACC
AGTG----------------------------------------------------------------------------
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