Multiple sequence alignment - TraesCS3D01G008000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G008000 chr3D 100.000 2489 0 0 1 2489 2752432 2754920 0.000000e+00 4597
1 TraesCS3D01G008000 chr3D 76.767 1033 138 56 759 1755 2718039 2719005 3.720000e-133 484
2 TraesCS3D01G008000 chr3D 77.523 872 123 42 909 1748 2747032 2747862 8.110000e-125 457
3 TraesCS3D01G008000 chr3D 90.794 315 27 2 1755 2069 85257946 85258258 1.060000e-113 420
4 TraesCS3D01G008000 chr3D 89.783 323 24 6 1752 2069 609283059 609283377 2.980000e-109 405
5 TraesCS3D01G008000 chr3D 82.500 120 16 4 715 833 2734236 2734351 1.580000e-17 100
6 TraesCS3D01G008000 chrUn 86.263 1718 123 36 74 1713 32039668 32037986 0.000000e+00 1760
7 TraesCS3D01G008000 chrUn 82.243 214 28 8 1124 1334 63657554 63657348 2.540000e-40 176
8 TraesCS3D01G008000 chrUn 82.243 214 28 8 1124 1334 317285482 317285688 2.540000e-40 176
9 TraesCS3D01G008000 chrUn 81.373 204 31 4 744 943 63657873 63657673 2.560000e-35 159
10 TraesCS3D01G008000 chrUn 81.159 207 32 4 741 943 317285160 317285363 2.560000e-35 159
11 TraesCS3D01G008000 chrUn 81.159 207 32 4 741 943 372045085 372045288 2.560000e-35 159
12 TraesCS3D01G008000 chrUn 83.051 118 15 4 714 830 330705181 330705294 4.380000e-18 102
13 TraesCS3D01G008000 chr3B 86.233 1707 126 50 74 1728 3099539 3101188 0.000000e+00 1749
14 TraesCS3D01G008000 chr3B 87.379 412 43 7 2071 2479 3101215 3101620 4.850000e-127 464
15 TraesCS3D01G008000 chr3B 85.388 438 43 6 994 1419 3064616 3064188 3.800000e-118 435
16 TraesCS3D01G008000 chr3B 89.545 220 16 4 743 956 3064838 3064620 3.150000e-69 272
17 TraesCS3D01G008000 chr3B 96.825 126 4 0 592 717 3064959 3064834 6.970000e-51 211
18 TraesCS3D01G008000 chr3B 83.607 122 16 4 716 836 3068789 3068671 7.280000e-21 111
19 TraesCS3D01G008000 chr5B 93.651 315 16 3 1755 2069 374440195 374439885 3.750000e-128 468
20 TraesCS3D01G008000 chr5B 91.456 316 25 2 1755 2069 430457740 430457426 1.370000e-117 433
21 TraesCS3D01G008000 chr7D 92.138 318 23 1 1752 2069 575729082 575729397 4.880000e-122 448
22 TraesCS3D01G008000 chr5D 90.938 320 27 2 1752 2069 552779214 552779533 1.770000e-116 429
23 TraesCS3D01G008000 chr5D 90.794 315 27 1 1755 2069 546348918 546348606 1.060000e-113 420
24 TraesCS3D01G008000 chr6D 90.909 319 27 1 1752 2070 20298763 20299079 6.360000e-116 427
25 TraesCS3D01G008000 chr3A 91.447 304 23 2 1755 2056 698694713 698694411 4.950000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G008000 chr3D 2752432 2754920 2488 False 4597.00 4597 100.00000 1 2489 1 chr3D.!!$F4 2488
1 TraesCS3D01G008000 chr3D 2718039 2719005 966 False 484.00 484 76.76700 759 1755 1 chr3D.!!$F1 996
2 TraesCS3D01G008000 chr3D 2747032 2747862 830 False 457.00 457 77.52300 909 1748 1 chr3D.!!$F3 839
3 TraesCS3D01G008000 chrUn 32037986 32039668 1682 True 1760.00 1760 86.26300 74 1713 1 chrUn.!!$R1 1639
4 TraesCS3D01G008000 chr3B 3099539 3101620 2081 False 1106.50 1749 86.80600 74 2479 2 chr3B.!!$F1 2405
5 TraesCS3D01G008000 chr3B 3064188 3068789 4601 True 257.25 435 88.84125 592 1419 4 chr3B.!!$R1 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.317603 GCAATGATCCGCACATCTGC 60.318 55.0 0.0 0.0 40.38 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 5361 0.03254 GGCCATCCATTTTCCGCATC 59.967 55.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.974060 AGTTAACAAAATGGTACTTTCTCTGA 57.026 30.769 8.61 0.00 0.00 3.27
43 44 8.837389 AGTTAACAAAATGGTACTTTCTCTGAC 58.163 33.333 8.61 0.00 0.00 3.51
45 46 4.755123 ACAAAATGGTACTTTCTCTGACCG 59.245 41.667 0.00 0.00 34.49 4.79
47 48 3.870633 ATGGTACTTTCTCTGACCGAC 57.129 47.619 0.00 0.00 34.49 4.79
48 49 2.872732 TGGTACTTTCTCTGACCGACT 58.127 47.619 0.00 0.00 34.49 4.18
49 50 2.818432 TGGTACTTTCTCTGACCGACTC 59.182 50.000 0.00 0.00 34.49 3.36
50 51 2.818432 GGTACTTTCTCTGACCGACTCA 59.182 50.000 0.00 0.00 0.00 3.41
51 52 3.366171 GGTACTTTCTCTGACCGACTCAC 60.366 52.174 0.00 0.00 0.00 3.51
56 57 5.010719 ACTTTCTCTGACCGACTCACAATTA 59.989 40.000 0.00 0.00 0.00 1.40
57 58 4.703645 TCTCTGACCGACTCACAATTAG 57.296 45.455 0.00 0.00 0.00 1.73
59 60 5.250982 TCTCTGACCGACTCACAATTAGTA 58.749 41.667 0.00 0.00 0.00 1.82
60 61 5.123502 TCTCTGACCGACTCACAATTAGTAC 59.876 44.000 0.00 0.00 0.00 2.73
61 62 4.763279 TCTGACCGACTCACAATTAGTACA 59.237 41.667 0.00 0.00 0.00 2.90
62 63 5.055642 TGACCGACTCACAATTAGTACAG 57.944 43.478 0.00 0.00 0.00 2.74
63 64 3.846360 ACCGACTCACAATTAGTACAGC 58.154 45.455 0.00 0.00 0.00 4.40
64 65 3.510360 ACCGACTCACAATTAGTACAGCT 59.490 43.478 0.00 0.00 0.00 4.24
65 66 4.021368 ACCGACTCACAATTAGTACAGCTT 60.021 41.667 0.00 0.00 0.00 3.74
66 67 4.929808 CCGACTCACAATTAGTACAGCTTT 59.070 41.667 0.00 0.00 0.00 3.51
68 69 6.588756 CCGACTCACAATTAGTACAGCTTTAA 59.411 38.462 0.00 0.00 0.00 1.52
69 70 7.277981 CCGACTCACAATTAGTACAGCTTTAAT 59.722 37.037 0.00 0.00 0.00 1.40
120 121 8.307483 TCTTTTCATCAAAACCTAACACAACAA 58.693 29.630 0.00 0.00 0.00 2.83
131 132 7.534723 ACCTAACACAACAATAGTCACTAGA 57.465 36.000 0.00 0.00 0.00 2.43
135 136 7.715265 AACACAACAATAGTCACTAGAACAG 57.285 36.000 0.00 0.00 0.00 3.16
237 238 2.726821 TCCCTTTGACAGCAATGATCC 58.273 47.619 0.00 0.00 33.25 3.36
242 243 0.321475 TGACAGCAATGATCCGCACA 60.321 50.000 0.00 0.00 0.00 4.57
246 247 1.002792 CAGCAATGATCCGCACATCTG 60.003 52.381 0.00 0.00 0.00 2.90
247 248 0.317603 GCAATGATCCGCACATCTGC 60.318 55.000 0.00 0.00 40.38 4.26
248 249 1.018910 CAATGATCCGCACATCTGCA 58.981 50.000 0.00 0.00 44.50 4.41
279 292 1.655329 CCACGATCGAGGTAGCTCC 59.345 63.158 24.34 1.70 0.00 4.70
280 293 1.655329 CACGATCGAGGTAGCTCCC 59.345 63.158 24.34 5.16 36.75 4.30
281 294 1.892862 ACGATCGAGGTAGCTCCCG 60.893 63.158 24.34 17.40 36.75 5.14
283 296 1.570347 CGATCGAGGTAGCTCCCGAG 61.570 65.000 10.26 2.46 40.29 4.63
286 299 1.753463 CGAGGTAGCTCCCGAGGTT 60.753 63.158 16.06 0.00 40.09 3.50
288 301 1.381463 AGGTAGCTCCCGAGGTTCC 60.381 63.158 10.59 10.59 43.80 3.62
289 302 1.381463 GGTAGCTCCCGAGGTTCCT 60.381 63.158 11.14 0.00 41.36 3.36
299 312 4.601084 TCCCGAGGTTCCTCTGATATATC 58.399 47.826 15.60 5.73 0.00 1.63
341 354 4.059773 TCAAAATAATGCCAACCTCCCT 57.940 40.909 0.00 0.00 0.00 4.20
342 355 5.199982 TCAAAATAATGCCAACCTCCCTA 57.800 39.130 0.00 0.00 0.00 3.53
367 380 0.453390 GCAAGTGGTAGCATGCCTTC 59.547 55.000 15.66 4.90 43.60 3.46
374 407 1.373570 GTAGCATGCCTTCCACACTC 58.626 55.000 15.66 0.00 0.00 3.51
514 548 6.894682 TGGACAGATGCCATATGTTAAGTAA 58.105 36.000 6.39 0.00 34.37 2.24
542 577 6.194285 AGCCCTTAAAAATGCCCTTTTAAA 57.806 33.333 11.67 0.00 39.21 1.52
589 624 8.647143 AAAATGTGAAATTGAACATCGTCTTT 57.353 26.923 6.70 2.58 35.99 2.52
590 625 7.858052 AATGTGAAATTGAACATCGTCTTTC 57.142 32.000 6.70 0.00 35.99 2.62
757 4003 3.434596 GGTCCACACCCCTATGAATAACC 60.435 52.174 0.00 0.00 36.54 2.85
812 4058 7.867403 TCACTACTACCAAAACTACTTTAACCG 59.133 37.037 0.00 0.00 0.00 4.44
833 4079 1.827344 CTGTAGACATGCTGGACCTCA 59.173 52.381 0.00 0.00 0.00 3.86
834 4080 2.234661 CTGTAGACATGCTGGACCTCAA 59.765 50.000 0.00 0.00 0.00 3.02
869 4115 0.454196 TGTCATTAGCGCGCTACAGA 59.546 50.000 38.48 32.45 0.00 3.41
870 4116 1.135228 TGTCATTAGCGCGCTACAGAA 60.135 47.619 38.48 26.89 0.00 3.02
872 4118 0.855349 CATTAGCGCGCTACAGAAGG 59.145 55.000 38.48 24.30 0.00 3.46
880 4126 2.602676 GCTACAGAAGGTGGGGCCA 61.603 63.158 4.39 0.00 40.61 5.36
881 4127 1.604378 CTACAGAAGGTGGGGCCAG 59.396 63.158 4.39 0.00 40.61 4.85
883 4129 4.748144 CAGAAGGTGGGGCCAGCC 62.748 72.222 4.39 6.69 44.62 4.85
977 4229 1.609208 CCACTCAAAACCCACTCCAG 58.391 55.000 0.00 0.00 0.00 3.86
981 4233 1.072965 CTCAAAACCCACTCCAGAGCT 59.927 52.381 0.00 0.00 0.00 4.09
982 4234 1.494721 TCAAAACCCACTCCAGAGCTT 59.505 47.619 0.00 0.00 0.00 3.74
983 4235 2.708861 TCAAAACCCACTCCAGAGCTTA 59.291 45.455 0.00 0.00 0.00 3.09
984 4236 3.077359 CAAAACCCACTCCAGAGCTTAG 58.923 50.000 0.00 0.00 0.00 2.18
1070 4343 0.964358 GAAGCAGCTTCCCATGCAGT 60.964 55.000 22.88 0.00 45.01 4.40
1111 4384 1.618837 TGGACCTGTCTCTAACACTGC 59.381 52.381 0.00 0.00 33.24 4.40
1144 4438 2.757077 CACCACCACCTTCCTCCC 59.243 66.667 0.00 0.00 0.00 4.30
1191 4485 1.205893 CTTCCTTCTTCTACAGGCGCT 59.794 52.381 7.64 0.00 0.00 5.92
1194 4488 0.460987 CTTCTTCTACAGGCGCTGGG 60.461 60.000 7.64 0.00 35.51 4.45
1266 4563 2.094442 CGAGAAGACCTTCCTCAAGTCC 60.094 54.545 6.17 0.00 40.33 3.85
1347 4644 1.686110 CCACCTCTACCTTCCCGCT 60.686 63.158 0.00 0.00 0.00 5.52
1376 4676 3.286751 CACCCACCACAACCAGCG 61.287 66.667 0.00 0.00 0.00 5.18
1436 4736 3.717712 CGCGTACGCCTACTAGTAC 57.282 57.895 32.64 3.40 39.66 2.73
1455 4770 2.251642 GCTTGACGACCACCACCAC 61.252 63.158 0.00 0.00 0.00 4.16
1546 4872 3.188460 GTGCGTTTTGCTTCTCCTCATAA 59.812 43.478 0.00 0.00 46.63 1.90
1553 4896 7.298854 GTTTTGCTTCTCCTCATAACAACTAC 58.701 38.462 0.00 0.00 0.00 2.73
1558 4901 6.097129 GCTTCTCCTCATAACAACTACCTAGT 59.903 42.308 0.00 0.00 38.39 2.57
1590 4935 3.070878 TGTGCACTCAAGTATCTGTGGAA 59.929 43.478 19.41 0.00 32.97 3.53
1596 4941 4.202357 ACTCAAGTATCTGTGGAAGCAACA 60.202 41.667 0.00 0.00 0.00 3.33
1620 4968 7.663081 ACATCTGTTGATCATTGTTAGTTCACT 59.337 33.333 0.00 0.00 0.00 3.41
1627 4975 5.422666 TCATTGTTAGTTCACTTGCACTG 57.577 39.130 0.00 0.00 0.00 3.66
1670 5018 0.825425 TGCTGAATTTTGCCCCGACA 60.825 50.000 0.00 0.00 0.00 4.35
1671 5019 0.532115 GCTGAATTTTGCCCCGACAT 59.468 50.000 0.00 0.00 0.00 3.06
1672 5020 1.066929 GCTGAATTTTGCCCCGACATT 60.067 47.619 0.00 0.00 0.00 2.71
1673 5021 2.612721 GCTGAATTTTGCCCCGACATTT 60.613 45.455 0.00 0.00 0.00 2.32
1674 5022 3.663025 CTGAATTTTGCCCCGACATTTT 58.337 40.909 0.00 0.00 0.00 1.82
1675 5023 4.815269 CTGAATTTTGCCCCGACATTTTA 58.185 39.130 0.00 0.00 0.00 1.52
1679 5027 3.926821 TTTGCCCCGACATTTTACTTC 57.073 42.857 0.00 0.00 0.00 3.01
1694 5042 7.227910 ACATTTTACTTCGCAAAAAGGAGTAGA 59.772 33.333 0.00 0.00 32.37 2.59
1721 5069 1.378882 CGCATGTTGATGGACAGGGG 61.379 60.000 0.00 0.00 37.79 4.79
1733 5088 4.485653 TGGACAGGGGATATATCACTGA 57.514 45.455 28.88 13.94 37.03 3.41
1735 5090 3.193691 GGACAGGGGATATATCACTGACG 59.806 52.174 28.88 14.11 37.03 4.35
1740 5095 5.710567 CAGGGGATATATCACTGACGAACTA 59.289 44.000 22.55 0.00 36.22 2.24
1757 5112 6.118170 ACGAACTATTACTACTACCTCTGCA 58.882 40.000 0.00 0.00 0.00 4.41
1758 5113 6.260493 ACGAACTATTACTACTACCTCTGCAG 59.740 42.308 7.63 7.63 0.00 4.41
1759 5114 6.394025 AACTATTACTACTACCTCTGCAGC 57.606 41.667 9.47 0.00 0.00 5.25
1760 5115 5.446860 ACTATTACTACTACCTCTGCAGCA 58.553 41.667 9.47 0.00 0.00 4.41
1761 5116 4.657436 ATTACTACTACCTCTGCAGCAC 57.343 45.455 9.47 0.00 0.00 4.40
1762 5117 1.924731 ACTACTACCTCTGCAGCACA 58.075 50.000 9.47 0.00 0.00 4.57
1763 5118 2.248248 ACTACTACCTCTGCAGCACAA 58.752 47.619 9.47 0.00 0.00 3.33
1764 5119 2.834549 ACTACTACCTCTGCAGCACAAT 59.165 45.455 9.47 0.00 0.00 2.71
1765 5120 4.023980 ACTACTACCTCTGCAGCACAATA 58.976 43.478 9.47 0.00 0.00 1.90
1766 5121 3.981071 ACTACCTCTGCAGCACAATAA 57.019 42.857 9.47 0.00 0.00 1.40
1767 5122 4.286297 ACTACCTCTGCAGCACAATAAA 57.714 40.909 9.47 0.00 0.00 1.40
1768 5123 4.256920 ACTACCTCTGCAGCACAATAAAG 58.743 43.478 9.47 0.00 0.00 1.85
1769 5124 1.815003 ACCTCTGCAGCACAATAAAGC 59.185 47.619 9.47 0.00 0.00 3.51
1770 5125 2.089980 CCTCTGCAGCACAATAAAGCT 58.910 47.619 9.47 0.00 42.94 3.74
1771 5126 2.490903 CCTCTGCAGCACAATAAAGCTT 59.509 45.455 9.47 0.00 39.50 3.74
1772 5127 3.427233 CCTCTGCAGCACAATAAAGCTTC 60.427 47.826 9.47 0.00 39.50 3.86
1773 5128 2.489329 TCTGCAGCACAATAAAGCTTCC 59.511 45.455 9.47 0.00 39.50 3.46
1774 5129 2.490903 CTGCAGCACAATAAAGCTTCCT 59.509 45.455 0.00 0.00 39.50 3.36
1775 5130 3.684908 TGCAGCACAATAAAGCTTCCTA 58.315 40.909 0.00 0.00 39.50 2.94
1776 5131 4.078537 TGCAGCACAATAAAGCTTCCTAA 58.921 39.130 0.00 0.00 39.50 2.69
1777 5132 4.082787 TGCAGCACAATAAAGCTTCCTAAC 60.083 41.667 0.00 0.00 39.50 2.34
1778 5133 4.156739 GCAGCACAATAAAGCTTCCTAACT 59.843 41.667 0.00 0.00 39.50 2.24
1779 5134 5.354234 GCAGCACAATAAAGCTTCCTAACTA 59.646 40.000 0.00 0.00 39.50 2.24
1780 5135 6.457528 GCAGCACAATAAAGCTTCCTAACTAG 60.458 42.308 0.00 0.00 39.50 2.57
1781 5136 6.818644 CAGCACAATAAAGCTTCCTAACTAGA 59.181 38.462 0.00 0.00 39.50 2.43
1782 5137 7.334421 CAGCACAATAAAGCTTCCTAACTAGAA 59.666 37.037 0.00 0.00 39.50 2.10
1783 5138 7.334671 AGCACAATAAAGCTTCCTAACTAGAAC 59.665 37.037 0.00 0.00 38.01 3.01
1784 5139 7.674240 GCACAATAAAGCTTCCTAACTAGAACG 60.674 40.741 0.00 0.00 0.00 3.95
1785 5140 7.331193 CACAATAAAGCTTCCTAACTAGAACGT 59.669 37.037 0.00 0.00 0.00 3.99
1786 5141 7.331193 ACAATAAAGCTTCCTAACTAGAACGTG 59.669 37.037 0.00 0.00 0.00 4.49
1787 5142 5.464030 AAAGCTTCCTAACTAGAACGTGA 57.536 39.130 0.00 0.00 0.00 4.35
1788 5143 4.705337 AGCTTCCTAACTAGAACGTGAG 57.295 45.455 0.00 0.00 0.00 3.51
1789 5144 4.333690 AGCTTCCTAACTAGAACGTGAGA 58.666 43.478 0.00 0.00 0.00 3.27
1790 5145 4.951094 AGCTTCCTAACTAGAACGTGAGAT 59.049 41.667 0.00 0.00 0.00 2.75
1791 5146 6.120905 AGCTTCCTAACTAGAACGTGAGATA 58.879 40.000 0.00 0.00 0.00 1.98
1792 5147 6.602406 AGCTTCCTAACTAGAACGTGAGATAA 59.398 38.462 0.00 0.00 0.00 1.75
1793 5148 7.122353 AGCTTCCTAACTAGAACGTGAGATAAA 59.878 37.037 0.00 0.00 0.00 1.40
1794 5149 7.758528 GCTTCCTAACTAGAACGTGAGATAAAA 59.241 37.037 0.00 0.00 0.00 1.52
1795 5150 8.976986 TTCCTAACTAGAACGTGAGATAAAAC 57.023 34.615 0.00 0.00 0.00 2.43
1796 5151 8.114331 TCCTAACTAGAACGTGAGATAAAACA 57.886 34.615 0.00 0.00 0.00 2.83
1797 5152 8.746530 TCCTAACTAGAACGTGAGATAAAACAT 58.253 33.333 0.00 0.00 0.00 2.71
1798 5153 9.367444 CCTAACTAGAACGTGAGATAAAACATT 57.633 33.333 0.00 0.00 0.00 2.71
1800 5155 8.827177 AACTAGAACGTGAGATAAAACATTCA 57.173 30.769 0.00 0.00 0.00 2.57
1801 5156 9.436957 AACTAGAACGTGAGATAAAACATTCAT 57.563 29.630 0.00 0.00 0.00 2.57
1926 5281 8.415950 TCCTAGATTCTAGATAGAAAGCCTTG 57.584 38.462 20.14 5.79 44.63 3.61
1927 5282 7.039363 TCCTAGATTCTAGATAGAAAGCCTTGC 60.039 40.741 20.14 0.00 44.63 4.01
1928 5283 6.745794 AGATTCTAGATAGAAAGCCTTGCT 57.254 37.500 6.40 0.00 44.63 3.91
1929 5284 6.523840 AGATTCTAGATAGAAAGCCTTGCTG 58.476 40.000 6.40 0.00 44.63 4.41
1930 5285 5.683876 TTCTAGATAGAAAGCCTTGCTGT 57.316 39.130 0.00 0.00 39.62 4.40
1931 5286 5.016051 TCTAGATAGAAAGCCTTGCTGTG 57.984 43.478 0.00 0.00 39.62 3.66
1932 5287 2.363683 AGATAGAAAGCCTTGCTGTGC 58.636 47.619 0.00 0.00 39.62 4.57
1933 5288 2.026449 AGATAGAAAGCCTTGCTGTGCT 60.026 45.455 0.00 0.00 39.62 4.40
1934 5289 1.527034 TAGAAAGCCTTGCTGTGCTG 58.473 50.000 0.00 0.00 39.62 4.41
1935 5290 1.372623 GAAAGCCTTGCTGTGCTGC 60.373 57.895 0.00 0.00 39.62 5.25
1936 5291 3.203546 AAAGCCTTGCTGTGCTGCG 62.204 57.895 0.00 0.00 39.62 5.18
1939 5294 2.979676 CCTTGCTGTGCTGCGGAA 60.980 61.111 0.00 0.00 35.36 4.30
1940 5295 2.559840 CTTGCTGTGCTGCGGAAG 59.440 61.111 0.00 0.00 35.36 3.46
1941 5296 2.203195 TTGCTGTGCTGCGGAAGT 60.203 55.556 0.00 0.00 35.36 3.01
1942 5297 1.789078 CTTGCTGTGCTGCGGAAGTT 61.789 55.000 0.00 0.00 35.36 2.66
1943 5298 1.383456 TTGCTGTGCTGCGGAAGTTT 61.383 50.000 0.00 0.00 35.36 2.66
1944 5299 1.370900 GCTGTGCTGCGGAAGTTTG 60.371 57.895 0.00 0.00 0.00 2.93
1945 5300 1.785041 GCTGTGCTGCGGAAGTTTGA 61.785 55.000 0.00 0.00 0.00 2.69
1946 5301 0.662619 CTGTGCTGCGGAAGTTTGAA 59.337 50.000 0.00 0.00 0.00 2.69
1947 5302 0.662619 TGTGCTGCGGAAGTTTGAAG 59.337 50.000 0.00 0.00 0.00 3.02
1948 5303 0.663153 GTGCTGCGGAAGTTTGAAGT 59.337 50.000 0.00 0.00 0.00 3.01
1949 5304 1.065551 GTGCTGCGGAAGTTTGAAGTT 59.934 47.619 0.00 0.00 0.00 2.66
1950 5305 1.333619 TGCTGCGGAAGTTTGAAGTTC 59.666 47.619 0.00 0.00 37.57 3.01
1951 5306 1.333619 GCTGCGGAAGTTTGAAGTTCA 59.666 47.619 0.08 0.08 39.55 3.18
1952 5307 2.223479 GCTGCGGAAGTTTGAAGTTCAA 60.223 45.455 14.35 14.35 39.55 2.69
1953 5308 3.733684 GCTGCGGAAGTTTGAAGTTCAAA 60.734 43.478 23.91 23.91 43.37 2.69
1954 5309 4.420168 CTGCGGAAGTTTGAAGTTCAAAA 58.580 39.130 28.05 12.98 46.53 2.44
1955 5310 4.170256 TGCGGAAGTTTGAAGTTCAAAAC 58.830 39.130 28.05 21.49 46.53 2.43
1956 5311 4.170256 GCGGAAGTTTGAAGTTCAAAACA 58.830 39.130 28.05 8.35 46.53 2.83
1957 5312 4.803613 GCGGAAGTTTGAAGTTCAAAACAT 59.196 37.500 28.05 18.36 46.53 2.71
1958 5313 5.276348 GCGGAAGTTTGAAGTTCAAAACATG 60.276 40.000 28.05 18.60 46.53 3.21
1959 5314 5.804979 CGGAAGTTTGAAGTTCAAAACATGT 59.195 36.000 28.05 14.05 46.53 3.21
1960 5315 6.310224 CGGAAGTTTGAAGTTCAAAACATGTT 59.690 34.615 28.05 17.38 46.53 2.71
1961 5316 7.462724 CGGAAGTTTGAAGTTCAAAACATGTTC 60.463 37.037 28.05 22.37 46.53 3.18
1962 5317 7.545615 GGAAGTTTGAAGTTCAAAACATGTTCT 59.454 33.333 28.05 17.66 46.53 3.01
1963 5318 9.567848 GAAGTTTGAAGTTCAAAACATGTTCTA 57.432 29.630 28.05 4.15 46.53 2.10
1965 5320 9.520204 AGTTTGAAGTTCAAAACATGTTCTATG 57.480 29.630 28.05 11.50 46.53 2.23
1966 5321 9.301153 GTTTGAAGTTCAAAACATGTTCTATGT 57.699 29.630 28.05 0.00 46.53 2.29
1967 5322 8.854979 TTGAAGTTCAAAACATGTTCTATGTG 57.145 30.769 15.92 5.80 32.71 3.21
1968 5323 8.219546 TGAAGTTCAAAACATGTTCTATGTGA 57.780 30.769 12.39 7.96 31.80 3.58
1969 5324 8.344831 TGAAGTTCAAAACATGTTCTATGTGAG 58.655 33.333 12.39 0.00 31.80 3.51
1970 5325 8.450578 AAGTTCAAAACATGTTCTATGTGAGA 57.549 30.769 12.39 0.00 31.80 3.27
1971 5326 8.092521 AGTTCAAAACATGTTCTATGTGAGAG 57.907 34.615 12.39 0.00 34.93 3.20
1972 5327 7.933577 AGTTCAAAACATGTTCTATGTGAGAGA 59.066 33.333 12.39 0.00 34.93 3.10
1973 5328 8.559536 GTTCAAAACATGTTCTATGTGAGAGAA 58.440 33.333 12.39 2.16 34.93 2.87
1974 5329 8.675705 TCAAAACATGTTCTATGTGAGAGAAA 57.324 30.769 12.39 0.00 34.78 2.52
1975 5330 9.288576 TCAAAACATGTTCTATGTGAGAGAAAT 57.711 29.630 12.39 0.00 34.78 2.17
2000 5355 6.371809 AAAAAGAGAAATGTACTTGCACGA 57.628 33.333 0.00 0.00 0.00 4.35
2001 5356 6.371809 AAAAGAGAAATGTACTTGCACGAA 57.628 33.333 0.00 0.00 0.00 3.85
2002 5357 6.560253 AAAGAGAAATGTACTTGCACGAAT 57.440 33.333 0.00 0.00 0.00 3.34
2003 5358 5.786401 AGAGAAATGTACTTGCACGAATC 57.214 39.130 0.00 0.00 0.00 2.52
2004 5359 5.237815 AGAGAAATGTACTTGCACGAATCA 58.762 37.500 0.00 0.00 0.00 2.57
2005 5360 5.120830 AGAGAAATGTACTTGCACGAATCAC 59.879 40.000 0.00 0.00 0.00 3.06
2007 5362 2.425578 TGTACTTGCACGAATCACGA 57.574 45.000 0.00 0.00 45.77 4.35
2008 5363 2.954316 TGTACTTGCACGAATCACGAT 58.046 42.857 0.00 0.00 45.77 3.73
2009 5364 2.666022 TGTACTTGCACGAATCACGATG 59.334 45.455 0.00 0.00 45.77 3.84
2010 5365 0.443869 ACTTGCACGAATCACGATGC 59.556 50.000 0.00 0.00 45.77 3.91
2011 5366 0.584785 CTTGCACGAATCACGATGCG 60.585 55.000 5.86 5.86 44.87 4.73
2012 5367 1.965391 TTGCACGAATCACGATGCGG 61.965 55.000 11.94 2.59 44.01 5.69
2013 5368 2.164663 GCACGAATCACGATGCGGA 61.165 57.895 11.94 0.00 44.01 5.54
2014 5369 1.692148 GCACGAATCACGATGCGGAA 61.692 55.000 11.94 0.00 44.01 4.30
2015 5370 0.718904 CACGAATCACGATGCGGAAA 59.281 50.000 11.94 0.00 44.01 3.13
2016 5371 1.127766 CACGAATCACGATGCGGAAAA 59.872 47.619 11.94 0.00 44.01 2.29
2017 5372 2.006888 ACGAATCACGATGCGGAAAAT 58.993 42.857 11.94 0.00 44.01 1.82
2018 5373 2.223021 ACGAATCACGATGCGGAAAATG 60.223 45.455 11.94 0.00 44.01 2.32
2019 5374 2.719798 GAATCACGATGCGGAAAATGG 58.280 47.619 0.00 0.00 0.00 3.16
2020 5375 2.036958 ATCACGATGCGGAAAATGGA 57.963 45.000 0.00 0.00 0.00 3.41
2021 5376 2.036958 TCACGATGCGGAAAATGGAT 57.963 45.000 0.00 0.00 0.00 3.41
2022 5377 1.670295 TCACGATGCGGAAAATGGATG 59.330 47.619 0.00 0.00 0.00 3.51
2023 5378 1.024271 ACGATGCGGAAAATGGATGG 58.976 50.000 0.00 0.00 0.00 3.51
2024 5379 0.318107 CGATGCGGAAAATGGATGGC 60.318 55.000 0.00 0.00 0.00 4.40
2025 5380 0.032540 GATGCGGAAAATGGATGGCC 59.967 55.000 0.00 0.00 0.00 5.36
2036 5391 1.365293 TGGATGGCCAGGATAGATGG 58.635 55.000 13.05 0.00 39.92 3.51
2037 5392 0.622665 GGATGGCCAGGATAGATGGG 59.377 60.000 13.05 0.00 38.33 4.00
2040 5395 3.913107 GCCAGGATAGATGGGCCT 58.087 61.111 4.53 0.00 40.55 5.19
2041 5396 1.377994 GCCAGGATAGATGGGCCTG 59.622 63.158 4.53 0.00 46.83 4.85
2043 5398 2.073232 CAGGATAGATGGGCCTGGG 58.927 63.158 4.53 0.00 44.24 4.45
2044 5399 0.769776 CAGGATAGATGGGCCTGGGT 60.770 60.000 4.53 0.00 44.24 4.51
2045 5400 0.769776 AGGATAGATGGGCCTGGGTG 60.770 60.000 4.53 0.00 0.00 4.61
2046 5401 1.073897 GATAGATGGGCCTGGGTGC 59.926 63.158 4.53 0.00 0.00 5.01
2047 5402 1.697394 ATAGATGGGCCTGGGTGCA 60.697 57.895 4.53 0.00 0.00 4.57
2048 5403 1.713005 ATAGATGGGCCTGGGTGCAG 61.713 60.000 4.53 0.00 0.00 4.41
2049 5404 4.828296 GATGGGCCTGGGTGCAGG 62.828 72.222 4.53 0.00 44.98 4.85
2055 5410 3.644606 CCTGGGTGCAGGTGCTCT 61.645 66.667 3.18 0.00 42.66 4.09
2056 5411 2.293318 CCTGGGTGCAGGTGCTCTA 61.293 63.158 3.18 0.00 42.66 2.43
2057 5412 1.679311 CTGGGTGCAGGTGCTCTAA 59.321 57.895 3.18 0.00 42.66 2.10
2058 5413 0.036732 CTGGGTGCAGGTGCTCTAAA 59.963 55.000 3.18 0.00 42.66 1.85
2059 5414 0.476338 TGGGTGCAGGTGCTCTAAAA 59.524 50.000 3.18 0.00 42.66 1.52
2060 5415 0.881796 GGGTGCAGGTGCTCTAAAAC 59.118 55.000 3.18 0.00 42.66 2.43
2061 5416 1.604604 GGTGCAGGTGCTCTAAAACA 58.395 50.000 3.18 0.00 42.66 2.83
2062 5417 2.162681 GGTGCAGGTGCTCTAAAACAT 58.837 47.619 3.18 0.00 42.66 2.71
2063 5418 3.343617 GGTGCAGGTGCTCTAAAACATA 58.656 45.455 3.18 0.00 42.66 2.29
2064 5419 3.947834 GGTGCAGGTGCTCTAAAACATAT 59.052 43.478 3.18 0.00 42.66 1.78
2065 5420 4.399303 GGTGCAGGTGCTCTAAAACATATT 59.601 41.667 3.18 0.00 42.66 1.28
2066 5421 5.105756 GGTGCAGGTGCTCTAAAACATATTT 60.106 40.000 3.18 0.00 42.66 1.40
2067 5422 6.389906 GTGCAGGTGCTCTAAAACATATTTT 58.610 36.000 3.18 0.00 42.66 1.82
2068 5423 6.528072 GTGCAGGTGCTCTAAAACATATTTTC 59.472 38.462 3.18 0.00 42.66 2.29
2069 5424 5.739161 GCAGGTGCTCTAAAACATATTTTCG 59.261 40.000 0.00 0.00 37.36 3.46
2070 5425 6.403200 GCAGGTGCTCTAAAACATATTTTCGA 60.403 38.462 0.00 0.00 37.36 3.71
2071 5426 6.961554 CAGGTGCTCTAAAACATATTTTCGAC 59.038 38.462 0.00 0.00 38.91 4.20
2072 5427 6.093633 AGGTGCTCTAAAACATATTTTCGACC 59.906 38.462 0.00 0.00 38.91 4.79
2073 5428 6.128117 GGTGCTCTAAAACATATTTTCGACCA 60.128 38.462 0.00 0.00 38.91 4.02
2074 5429 6.741358 GTGCTCTAAAACATATTTTCGACCAC 59.259 38.462 0.00 0.00 38.91 4.16
2075 5430 6.653320 TGCTCTAAAACATATTTTCGACCACT 59.347 34.615 0.00 0.00 38.91 4.00
2076 5431 6.961554 GCTCTAAAACATATTTTCGACCACTG 59.038 38.462 0.00 0.00 38.91 3.66
2077 5432 7.360946 GCTCTAAAACATATTTTCGACCACTGT 60.361 37.037 0.00 0.00 38.91 3.55
2078 5433 9.146984 CTCTAAAACATATTTTCGACCACTGTA 57.853 33.333 0.00 0.00 38.91 2.74
2079 5434 9.146984 TCTAAAACATATTTTCGACCACTGTAG 57.853 33.333 0.00 0.00 38.91 2.74
2086 5441 1.485124 TCGACCACTGTAGCCATGAT 58.515 50.000 0.00 0.00 0.00 2.45
2088 5443 2.361119 TCGACCACTGTAGCCATGATAC 59.639 50.000 0.00 0.00 0.00 2.24
2100 5455 2.487805 GCCATGATACATCTGCCTCCAA 60.488 50.000 0.00 0.00 0.00 3.53
2118 5473 2.105821 CCAAGTTCCTCTGTGGGTGTTA 59.894 50.000 0.00 0.00 36.20 2.41
2120 5475 2.690840 AGTTCCTCTGTGGGTGTTACT 58.309 47.619 0.00 0.00 36.20 2.24
2121 5476 2.368875 AGTTCCTCTGTGGGTGTTACTG 59.631 50.000 0.00 0.00 36.20 2.74
2125 5480 0.833949 TCTGTGGGTGTTACTGTGCA 59.166 50.000 0.00 0.00 0.00 4.57
2134 5489 1.247567 GTTACTGTGCATGGTTGGCT 58.752 50.000 0.00 0.00 0.00 4.75
2172 5528 2.612972 CCGTCTGTTGGATGTTAGTGCT 60.613 50.000 0.00 0.00 0.00 4.40
2176 5532 2.816087 CTGTTGGATGTTAGTGCTGCTT 59.184 45.455 0.00 0.00 0.00 3.91
2190 5546 0.604780 CTGCTTGCAGTAGTGTGGCT 60.605 55.000 13.89 0.00 0.00 4.75
2202 5558 1.007721 AGTGTGGCTCCCAGATCTAGT 59.992 52.381 0.00 0.00 32.34 2.57
2213 5569 2.366916 CCAGATCTAGTAAGTGGCTGGG 59.633 54.545 0.00 0.00 38.16 4.45
2277 5633 2.478894 GTGTCCAAGTATGTGTTGGTCG 59.521 50.000 1.95 0.00 44.30 4.79
2286 5642 1.924731 TGTGTTGGTCGAGGAGAGAT 58.075 50.000 0.00 0.00 0.00 2.75
2288 5644 0.532573 TGTTGGTCGAGGAGAGATGC 59.467 55.000 0.00 0.00 0.00 3.91
2295 5651 2.835431 AGGAGAGATGCGGTCCGG 60.835 66.667 14.38 0.00 35.33 5.14
2299 5655 3.224324 GAGATGCGGTCCGGCCTA 61.224 66.667 14.38 3.06 34.25 3.93
2310 5666 1.830145 CCGGCCTACTAATGCTGGT 59.170 57.895 0.00 0.00 46.79 4.00
2312 5668 1.623811 CCGGCCTACTAATGCTGGTAT 59.376 52.381 0.00 0.00 46.79 2.73
2330 5686 6.403636 GCTGGTATTTCTCCATGTTAGTTGTG 60.404 42.308 0.00 0.00 34.26 3.33
2346 5702 0.184692 TGTGGAAGTGTGATTGCCCA 59.815 50.000 0.00 0.00 0.00 5.36
2354 5710 1.937899 GTGTGATTGCCCACGGTATAC 59.062 52.381 0.00 0.00 39.80 1.47
2356 5712 1.134340 GTGATTGCCCACGGTATACCA 60.134 52.381 21.76 0.32 35.14 3.25
2362 5718 0.177141 CCCACGGTATACCAGGTGTG 59.823 60.000 21.76 18.79 35.14 3.82
2367 5723 2.289195 ACGGTATACCAGGTGTGTTGTG 60.289 50.000 21.76 3.35 35.14 3.33
2381 5737 2.890945 GTGTTGTGGGCTATTTGGAAGT 59.109 45.455 0.00 0.00 0.00 3.01
2387 5743 4.043561 TGTGGGCTATTTGGAAGTTTAGGA 59.956 41.667 0.00 0.00 0.00 2.94
2389 5745 5.014202 TGGGCTATTTGGAAGTTTAGGAAC 58.986 41.667 0.00 0.00 35.97 3.62
2393 5749 7.310423 GGGCTATTTGGAAGTTTAGGAACAATT 60.310 37.037 0.00 0.00 38.26 2.32
2429 5785 2.163815 GTGACCAGCTCATACACGTACT 59.836 50.000 0.00 0.00 0.00 2.73
2430 5786 3.376234 GTGACCAGCTCATACACGTACTA 59.624 47.826 0.00 0.00 0.00 1.82
2431 5787 3.626217 TGACCAGCTCATACACGTACTAG 59.374 47.826 0.00 0.00 0.00 2.57
2432 5788 3.875727 GACCAGCTCATACACGTACTAGA 59.124 47.826 0.00 0.00 0.00 2.43
2440 5796 0.962356 ACACGTACTAGACCGGTGGG 60.962 60.000 14.63 3.84 40.11 4.61
2457 5813 1.131928 GGGTGTGTTAGGGGTGGTCT 61.132 60.000 0.00 0.00 0.00 3.85
2462 5818 1.697982 GTGTTAGGGGTGGTCTGACTT 59.302 52.381 7.85 0.00 0.00 3.01
2463 5819 1.697432 TGTTAGGGGTGGTCTGACTTG 59.303 52.381 7.85 0.00 0.00 3.16
2465 5821 2.105993 GTTAGGGGTGGTCTGACTTGTT 59.894 50.000 7.85 0.00 0.00 2.83
2472 5828 1.069978 TGGTCTGACTTGTTCATGCGA 59.930 47.619 7.85 0.00 32.17 5.10
2474 5830 2.349886 GGTCTGACTTGTTCATGCGATC 59.650 50.000 7.85 0.00 32.17 3.69
2479 5835 3.201290 GACTTGTTCATGCGATCATCCT 58.799 45.455 0.00 0.00 0.00 3.24
2480 5836 3.201290 ACTTGTTCATGCGATCATCCTC 58.799 45.455 0.00 0.00 0.00 3.71
2481 5837 2.985957 TGTTCATGCGATCATCCTCA 57.014 45.000 0.00 0.00 0.00 3.86
2482 5838 2.830104 TGTTCATGCGATCATCCTCAG 58.170 47.619 0.00 0.00 0.00 3.35
2483 5839 2.431782 TGTTCATGCGATCATCCTCAGA 59.568 45.455 0.00 0.00 0.00 3.27
2484 5840 3.058450 GTTCATGCGATCATCCTCAGAG 58.942 50.000 0.00 0.00 0.00 3.35
2485 5841 1.000618 TCATGCGATCATCCTCAGAGC 59.999 52.381 0.00 0.00 0.00 4.09
2486 5842 1.046204 ATGCGATCATCCTCAGAGCA 58.954 50.000 0.00 0.00 37.54 4.26
2487 5843 1.046204 TGCGATCATCCTCAGAGCAT 58.954 50.000 0.00 0.00 0.00 3.79
2488 5844 1.415289 TGCGATCATCCTCAGAGCATT 59.585 47.619 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.403583 TCAGAGAAAGTACCATTTTGTTAACTT 57.596 29.630 7.22 0.00 0.00 2.66
17 18 8.837389 GTCAGAGAAAGTACCATTTTGTTAACT 58.163 33.333 7.22 0.00 0.00 2.24
18 19 8.074370 GGTCAGAGAAAGTACCATTTTGTTAAC 58.926 37.037 0.00 0.00 32.04 2.01
19 20 7.041644 CGGTCAGAGAAAGTACCATTTTGTTAA 60.042 37.037 0.00 0.00 32.04 2.01
20 21 6.425721 CGGTCAGAGAAAGTACCATTTTGTTA 59.574 38.462 0.00 0.00 32.04 2.41
21 22 5.238650 CGGTCAGAGAAAGTACCATTTTGTT 59.761 40.000 0.00 0.00 32.04 2.83
22 23 4.755123 CGGTCAGAGAAAGTACCATTTTGT 59.245 41.667 0.00 0.00 32.04 2.83
23 24 4.994852 TCGGTCAGAGAAAGTACCATTTTG 59.005 41.667 0.00 0.00 32.04 2.44
24 25 4.995487 GTCGGTCAGAGAAAGTACCATTTT 59.005 41.667 0.00 0.00 32.04 1.82
25 26 4.283722 AGTCGGTCAGAGAAAGTACCATTT 59.716 41.667 0.00 0.00 32.04 2.32
27 28 3.432378 AGTCGGTCAGAGAAAGTACCAT 58.568 45.455 0.00 0.00 32.04 3.55
28 29 2.818432 GAGTCGGTCAGAGAAAGTACCA 59.182 50.000 0.00 0.00 32.04 3.25
29 30 2.818432 TGAGTCGGTCAGAGAAAGTACC 59.182 50.000 0.00 0.00 0.00 3.34
30 31 3.252701 TGTGAGTCGGTCAGAGAAAGTAC 59.747 47.826 0.00 0.00 35.13 2.73
32 33 2.307768 TGTGAGTCGGTCAGAGAAAGT 58.692 47.619 0.00 0.00 35.13 2.66
33 34 3.371102 TTGTGAGTCGGTCAGAGAAAG 57.629 47.619 0.00 0.00 35.13 2.62
34 35 4.336889 AATTGTGAGTCGGTCAGAGAAA 57.663 40.909 0.00 0.00 35.13 2.52
35 36 4.523173 ACTAATTGTGAGTCGGTCAGAGAA 59.477 41.667 0.00 0.00 35.13 2.87
36 37 4.079970 ACTAATTGTGAGTCGGTCAGAGA 58.920 43.478 0.00 0.00 35.13 3.10
37 38 4.442375 ACTAATTGTGAGTCGGTCAGAG 57.558 45.455 0.00 0.00 35.13 3.35
38 39 4.763279 TGTACTAATTGTGAGTCGGTCAGA 59.237 41.667 0.00 0.00 35.13 3.27
39 40 5.055642 TGTACTAATTGTGAGTCGGTCAG 57.944 43.478 0.00 0.00 35.13 3.51
40 41 4.617530 GCTGTACTAATTGTGAGTCGGTCA 60.618 45.833 0.00 0.00 0.00 4.02
42 43 3.510360 AGCTGTACTAATTGTGAGTCGGT 59.490 43.478 0.00 0.00 0.00 4.69
43 44 4.111375 AGCTGTACTAATTGTGAGTCGG 57.889 45.455 0.00 0.00 0.00 4.79
48 49 9.337396 CCCATATTAAAGCTGTACTAATTGTGA 57.663 33.333 0.00 0.00 0.00 3.58
49 50 9.337396 TCCCATATTAAAGCTGTACTAATTGTG 57.663 33.333 0.00 0.00 0.00 3.33
56 57 7.721399 CCTTCAATCCCATATTAAAGCTGTACT 59.279 37.037 0.00 0.00 0.00 2.73
57 58 7.040409 CCCTTCAATCCCATATTAAAGCTGTAC 60.040 40.741 0.00 0.00 0.00 2.90
59 60 5.835280 CCCTTCAATCCCATATTAAAGCTGT 59.165 40.000 0.00 0.00 0.00 4.40
60 61 6.070656 TCCCTTCAATCCCATATTAAAGCTG 58.929 40.000 0.00 0.00 0.00 4.24
61 62 6.126068 ACTCCCTTCAATCCCATATTAAAGCT 60.126 38.462 0.00 0.00 0.00 3.74
62 63 6.071320 ACTCCCTTCAATCCCATATTAAAGC 58.929 40.000 0.00 0.00 0.00 3.51
63 64 8.440771 ACTACTCCCTTCAATCCCATATTAAAG 58.559 37.037 0.00 0.00 0.00 1.85
64 65 8.344939 ACTACTCCCTTCAATCCCATATTAAA 57.655 34.615 0.00 0.00 0.00 1.52
65 66 7.947782 ACTACTCCCTTCAATCCCATATTAA 57.052 36.000 0.00 0.00 0.00 1.40
66 67 7.947782 AACTACTCCCTTCAATCCCATATTA 57.052 36.000 0.00 0.00 0.00 0.98
68 69 6.848562 AAACTACTCCCTTCAATCCCATAT 57.151 37.500 0.00 0.00 0.00 1.78
69 70 6.652205 AAAACTACTCCCTTCAATCCCATA 57.348 37.500 0.00 0.00 0.00 2.74
112 113 6.817184 ACTGTTCTAGTGACTATTGTTGTGT 58.183 36.000 0.00 0.00 38.49 3.72
120 121 9.190317 TCATCATGTAACTGTTCTAGTGACTAT 57.810 33.333 0.00 0.00 40.87 2.12
131 132 4.951715 ACCATGCATCATCATGTAACTGTT 59.048 37.500 0.00 0.00 41.60 3.16
135 136 3.561310 ACGACCATGCATCATCATGTAAC 59.439 43.478 0.00 0.00 41.60 2.50
242 243 2.105306 TGGCTACTACATGCATGCAGAT 59.895 45.455 29.57 18.17 0.00 2.90
246 247 0.583438 CGTGGCTACTACATGCATGC 59.417 55.000 26.53 11.82 0.00 4.06
247 248 2.223537 TCGTGGCTACTACATGCATG 57.776 50.000 25.09 25.09 0.00 4.06
248 249 2.608016 CGATCGTGGCTACTACATGCAT 60.608 50.000 7.03 0.00 0.00 3.96
279 292 5.294799 CGTAGATATATCAGAGGAACCTCGG 59.705 48.000 15.08 13.71 46.90 4.63
280 293 5.294799 CCGTAGATATATCAGAGGAACCTCG 59.705 48.000 15.08 9.88 46.90 4.63
281 294 5.066764 GCCGTAGATATATCAGAGGAACCTC 59.933 48.000 15.08 12.42 43.03 3.85
283 296 4.951094 AGCCGTAGATATATCAGAGGAACC 59.049 45.833 15.08 2.97 0.00 3.62
286 299 5.369833 GCTAGCCGTAGATATATCAGAGGA 58.630 45.833 15.08 0.09 0.00 3.71
288 301 5.682943 GGCTAGCCGTAGATATATCAGAG 57.317 47.826 20.16 5.17 0.00 3.35
323 336 7.202001 GCTAAATTAGGGAGGTTGGCATTATTT 60.202 37.037 1.88 0.00 0.00 1.40
341 354 4.338118 GGCATGCTACCACTTGCTAAATTA 59.662 41.667 18.92 0.00 39.82 1.40
342 355 3.131046 GGCATGCTACCACTTGCTAAATT 59.869 43.478 18.92 0.00 39.82 1.82
374 407 1.164411 TAGCATCAAACCAAGCACGG 58.836 50.000 0.00 0.00 0.00 4.94
514 548 1.544246 GGCATTTTTAAGGGCTCGTGT 59.456 47.619 0.00 0.00 34.66 4.49
518 552 3.981071 AAAGGGCATTTTTAAGGGCTC 57.019 42.857 0.00 0.00 37.91 4.70
567 602 6.073276 TCGAAAGACGATGTTCAATTTCACAT 60.073 34.615 0.00 0.00 46.45 3.21
589 624 9.806203 TCTTAGATTTACGTGGATTTATTTCGA 57.194 29.630 0.00 0.00 0.00 3.71
590 625 9.845305 GTCTTAGATTTACGTGGATTTATTTCG 57.155 33.333 0.00 0.00 0.00 3.46
595 630 9.932207 TTGAAGTCTTAGATTTACGTGGATTTA 57.068 29.630 0.00 0.00 0.00 1.40
614 3854 3.140325 TGGTCCATTGGAGTTGAAGTC 57.860 47.619 5.39 0.00 29.39 3.01
691 3932 6.351881 GGGGTAGATCTCGCCAAAATATATCA 60.352 42.308 17.58 0.00 37.75 2.15
757 4003 3.129109 CGACCATCAGTTCTCATCATGG 58.871 50.000 0.00 0.00 40.05 3.66
812 4058 0.539051 AGGTCCAGCATGTCTACAGC 59.461 55.000 0.00 0.00 0.00 4.40
833 4079 3.976015 TGACAAAGGACCTTGGACTTTT 58.024 40.909 16.05 0.00 32.52 2.27
834 4080 3.662759 TGACAAAGGACCTTGGACTTT 57.337 42.857 16.05 0.00 34.99 2.66
977 4229 3.526534 GAAGTGGTGTGGATCTAAGCTC 58.473 50.000 0.00 0.00 0.00 4.09
981 4233 3.054434 CCATGGAAGTGGTGTGGATCTAA 60.054 47.826 5.56 0.00 34.46 2.10
982 4234 2.505407 CCATGGAAGTGGTGTGGATCTA 59.495 50.000 5.56 0.00 34.46 1.98
983 4235 1.283029 CCATGGAAGTGGTGTGGATCT 59.717 52.381 5.56 0.00 34.46 2.75
984 4236 1.281867 TCCATGGAAGTGGTGTGGATC 59.718 52.381 13.46 0.00 40.27 3.36
1121 4394 1.228154 GAAGGTGGTGGTGGTGGTC 60.228 63.158 0.00 0.00 0.00 4.02
1144 4438 2.282674 TGCTGCAGCCCAAGAAGG 60.283 61.111 34.64 0.00 41.18 3.46
1216 4510 2.344203 ACGAGAAGAGCCTCCCACG 61.344 63.158 0.00 0.00 0.00 4.94
1290 4587 1.004560 CCTCTCCTTCTTGTGCGCA 60.005 57.895 5.66 5.66 0.00 6.09
1434 4734 1.007038 GTGGTGGTCGTCAAGCGTA 60.007 57.895 0.00 0.00 42.13 4.42
1436 4736 3.041940 GGTGGTGGTCGTCAAGCG 61.042 66.667 0.00 0.00 43.01 4.68
1447 4747 2.981909 CTGCTGCTGGTGGTGGTG 60.982 66.667 0.00 0.00 0.00 4.17
1498 4813 2.739292 TGTGCGTTGACACTAGAGAAC 58.261 47.619 0.00 0.00 41.30 3.01
1533 4859 5.346181 AGGTAGTTGTTATGAGGAGAAGC 57.654 43.478 0.00 0.00 0.00 3.86
1534 4860 7.484975 CACTAGGTAGTTGTTATGAGGAGAAG 58.515 42.308 0.00 0.00 33.46 2.85
1546 4872 0.388134 CGCACGCACTAGGTAGTTGT 60.388 55.000 0.00 0.00 33.46 3.32
1553 4896 2.355837 ACACACGCACGCACTAGG 60.356 61.111 0.00 0.00 0.00 3.02
1596 4941 8.509690 CAAGTGAACTAACAATGATCAACAGAT 58.490 33.333 0.00 0.00 0.00 2.90
1614 4959 1.082496 GCGAGCAGTGCAAGTGAAC 60.082 57.895 19.20 0.00 40.62 3.18
1620 4968 1.283487 CAACATGCGAGCAGTGCAA 59.717 52.632 19.20 0.00 46.87 4.08
1627 4975 2.352503 AAAATGGACAACATGCGAGC 57.647 45.000 0.00 0.00 40.44 5.03
1672 5020 6.932400 TGATCTACTCCTTTTTGCGAAGTAAA 59.068 34.615 0.00 0.00 41.04 2.01
1673 5021 6.460781 TGATCTACTCCTTTTTGCGAAGTAA 58.539 36.000 0.00 0.00 0.00 2.24
1674 5022 6.032956 TGATCTACTCCTTTTTGCGAAGTA 57.967 37.500 0.00 0.00 0.00 2.24
1675 5023 4.894784 TGATCTACTCCTTTTTGCGAAGT 58.105 39.130 0.00 0.00 0.00 3.01
1679 5027 6.185399 CGTTAATGATCTACTCCTTTTTGCG 58.815 40.000 0.00 0.00 0.00 4.85
1694 5042 4.639755 TGTCCATCAACATGCGTTAATGAT 59.360 37.500 0.00 0.00 33.14 2.45
1713 5061 3.193691 CGTCAGTGATATATCCCCTGTCC 59.806 52.174 20.46 14.54 0.00 4.02
1733 5088 6.118170 TGCAGAGGTAGTAGTAATAGTTCGT 58.882 40.000 0.00 0.00 0.00 3.85
1735 5090 6.039493 TGCTGCAGAGGTAGTAGTAATAGTTC 59.961 42.308 20.43 0.00 0.00 3.01
1740 5095 4.023980 TGTGCTGCAGAGGTAGTAGTAAT 58.976 43.478 20.43 0.00 0.00 1.89
1748 5103 3.009723 GCTTTATTGTGCTGCAGAGGTA 58.990 45.455 20.43 0.00 0.00 3.08
1749 5104 1.815003 GCTTTATTGTGCTGCAGAGGT 59.185 47.619 20.43 0.07 0.00 3.85
1757 5112 6.947464 TCTAGTTAGGAAGCTTTATTGTGCT 58.053 36.000 0.00 0.00 41.82 4.40
1758 5113 7.465173 GTTCTAGTTAGGAAGCTTTATTGTGC 58.535 38.462 0.00 0.00 0.00 4.57
1759 5114 7.331193 ACGTTCTAGTTAGGAAGCTTTATTGTG 59.669 37.037 0.00 0.00 0.00 3.33
1760 5115 7.331193 CACGTTCTAGTTAGGAAGCTTTATTGT 59.669 37.037 0.00 0.00 0.00 2.71
1761 5116 7.544566 TCACGTTCTAGTTAGGAAGCTTTATTG 59.455 37.037 0.00 0.00 0.00 1.90
1762 5117 7.609056 TCACGTTCTAGTTAGGAAGCTTTATT 58.391 34.615 0.00 0.00 0.00 1.40
1763 5118 7.122353 TCTCACGTTCTAGTTAGGAAGCTTTAT 59.878 37.037 0.00 0.00 0.00 1.40
1764 5119 6.432162 TCTCACGTTCTAGTTAGGAAGCTTTA 59.568 38.462 0.00 0.00 0.00 1.85
1765 5120 5.243283 TCTCACGTTCTAGTTAGGAAGCTTT 59.757 40.000 0.00 0.00 0.00 3.51
1766 5121 4.765856 TCTCACGTTCTAGTTAGGAAGCTT 59.234 41.667 0.00 0.00 0.00 3.74
1767 5122 4.333690 TCTCACGTTCTAGTTAGGAAGCT 58.666 43.478 0.00 0.00 0.00 3.74
1768 5123 4.698583 TCTCACGTTCTAGTTAGGAAGC 57.301 45.455 0.00 0.00 0.00 3.86
1769 5124 9.074443 GTTTTATCTCACGTTCTAGTTAGGAAG 57.926 37.037 0.00 0.00 0.00 3.46
1770 5125 8.579006 TGTTTTATCTCACGTTCTAGTTAGGAA 58.421 33.333 0.00 0.00 0.00 3.36
1771 5126 8.114331 TGTTTTATCTCACGTTCTAGTTAGGA 57.886 34.615 0.00 0.00 0.00 2.94
1772 5127 8.928270 ATGTTTTATCTCACGTTCTAGTTAGG 57.072 34.615 0.00 0.00 0.00 2.69
1774 5129 9.917129 TGAATGTTTTATCTCACGTTCTAGTTA 57.083 29.630 5.98 0.00 38.98 2.24
1775 5130 8.827177 TGAATGTTTTATCTCACGTTCTAGTT 57.173 30.769 5.98 0.00 38.98 2.24
1900 5255 9.034800 CAAGGCTTTCTATCTAGAATCTAGGAT 57.965 37.037 16.47 11.10 41.52 3.24
1901 5256 7.039363 GCAAGGCTTTCTATCTAGAATCTAGGA 60.039 40.741 16.47 4.32 41.52 2.94
1902 5257 7.039082 AGCAAGGCTTTCTATCTAGAATCTAGG 60.039 40.741 16.47 2.02 41.52 3.02
1903 5258 7.814107 CAGCAAGGCTTTCTATCTAGAATCTAG 59.186 40.741 10.93 10.93 41.52 2.43
1904 5259 7.288852 ACAGCAAGGCTTTCTATCTAGAATCTA 59.711 37.037 0.00 0.00 41.52 1.98
1905 5260 6.099557 ACAGCAAGGCTTTCTATCTAGAATCT 59.900 38.462 0.00 0.00 41.52 2.40
1906 5261 6.202570 CACAGCAAGGCTTTCTATCTAGAATC 59.797 42.308 0.00 0.00 41.52 2.52
1907 5262 6.054295 CACAGCAAGGCTTTCTATCTAGAAT 58.946 40.000 0.00 0.00 41.52 2.40
1908 5263 5.423015 CACAGCAAGGCTTTCTATCTAGAA 58.577 41.667 0.00 0.00 40.33 2.10
1909 5264 4.681781 GCACAGCAAGGCTTTCTATCTAGA 60.682 45.833 0.00 0.00 36.40 2.43
1910 5265 3.559242 GCACAGCAAGGCTTTCTATCTAG 59.441 47.826 0.00 0.00 36.40 2.43
1911 5266 3.198635 AGCACAGCAAGGCTTTCTATCTA 59.801 43.478 0.00 0.00 36.40 1.98
1912 5267 2.026449 AGCACAGCAAGGCTTTCTATCT 60.026 45.455 0.00 0.00 36.40 1.98
1913 5268 2.097142 CAGCACAGCAAGGCTTTCTATC 59.903 50.000 0.00 0.00 38.56 2.08
1914 5269 2.089980 CAGCACAGCAAGGCTTTCTAT 58.910 47.619 0.00 0.00 38.56 1.98
1915 5270 1.527034 CAGCACAGCAAGGCTTTCTA 58.473 50.000 0.00 0.00 38.56 2.10
1916 5271 1.803366 GCAGCACAGCAAGGCTTTCT 61.803 55.000 0.00 0.00 38.56 2.52
1917 5272 1.372623 GCAGCACAGCAAGGCTTTC 60.373 57.895 0.00 0.00 38.56 2.62
1918 5273 2.732658 GCAGCACAGCAAGGCTTT 59.267 55.556 0.00 0.00 38.56 3.51
1919 5274 3.667282 CGCAGCACAGCAAGGCTT 61.667 61.111 0.00 0.00 38.56 4.35
1922 5277 2.974489 CTTCCGCAGCACAGCAAGG 61.974 63.158 0.00 0.00 0.00 3.61
1923 5278 1.789078 AACTTCCGCAGCACAGCAAG 61.789 55.000 0.00 0.00 0.00 4.01
1924 5279 1.383456 AAACTTCCGCAGCACAGCAA 61.383 50.000 0.00 0.00 0.00 3.91
1925 5280 1.823470 AAACTTCCGCAGCACAGCA 60.823 52.632 0.00 0.00 0.00 4.41
1926 5281 1.370900 CAAACTTCCGCAGCACAGC 60.371 57.895 0.00 0.00 0.00 4.40
1927 5282 0.662619 TTCAAACTTCCGCAGCACAG 59.337 50.000 0.00 0.00 0.00 3.66
1928 5283 0.662619 CTTCAAACTTCCGCAGCACA 59.337 50.000 0.00 0.00 0.00 4.57
1929 5284 0.663153 ACTTCAAACTTCCGCAGCAC 59.337 50.000 0.00 0.00 0.00 4.40
1930 5285 1.333619 GAACTTCAAACTTCCGCAGCA 59.666 47.619 0.00 0.00 0.00 4.41
1931 5286 1.333619 TGAACTTCAAACTTCCGCAGC 59.666 47.619 0.00 0.00 0.00 5.25
1932 5287 3.691049 TTGAACTTCAAACTTCCGCAG 57.309 42.857 1.47 0.00 32.71 5.18
1933 5288 4.170256 GTTTTGAACTTCAAACTTCCGCA 58.830 39.130 15.19 0.00 45.03 5.69
1934 5289 4.170256 TGTTTTGAACTTCAAACTTCCGC 58.830 39.130 15.19 4.59 45.03 5.54
1935 5290 5.804979 ACATGTTTTGAACTTCAAACTTCCG 59.195 36.000 15.19 7.18 45.03 4.30
1936 5291 7.545615 AGAACATGTTTTGAACTTCAAACTTCC 59.454 33.333 13.36 6.12 45.03 3.46
1937 5292 8.466086 AGAACATGTTTTGAACTTCAAACTTC 57.534 30.769 13.36 10.93 45.03 3.01
1939 5294 9.520204 CATAGAACATGTTTTGAACTTCAAACT 57.480 29.630 13.36 10.25 45.03 2.66
1940 5295 9.301153 ACATAGAACATGTTTTGAACTTCAAAC 57.699 29.630 13.36 11.36 45.03 2.93
1941 5296 9.299963 CACATAGAACATGTTTTGAACTTCAAA 57.700 29.630 13.36 12.12 43.84 2.69
1942 5297 8.681806 TCACATAGAACATGTTTTGAACTTCAA 58.318 29.630 13.36 0.00 34.03 2.69
1943 5298 8.219546 TCACATAGAACATGTTTTGAACTTCA 57.780 30.769 13.36 0.00 0.00 3.02
1944 5299 8.559536 TCTCACATAGAACATGTTTTGAACTTC 58.440 33.333 13.36 0.00 0.00 3.01
1945 5300 8.450578 TCTCACATAGAACATGTTTTGAACTT 57.549 30.769 13.36 0.00 0.00 2.66
1946 5301 7.933577 TCTCTCACATAGAACATGTTTTGAACT 59.066 33.333 13.36 7.24 32.46 3.01
1947 5302 8.087982 TCTCTCACATAGAACATGTTTTGAAC 57.912 34.615 13.36 0.00 32.46 3.18
1948 5303 8.675705 TTCTCTCACATAGAACATGTTTTGAA 57.324 30.769 13.36 1.73 32.46 2.69
1949 5304 8.675705 TTTCTCTCACATAGAACATGTTTTGA 57.324 30.769 13.36 9.46 32.81 2.69
1977 5332 6.371809 TCGTGCAAGTACATTTCTCTTTTT 57.628 33.333 0.00 0.00 0.00 1.94
1978 5333 6.371809 TTCGTGCAAGTACATTTCTCTTTT 57.628 33.333 0.00 0.00 0.00 2.27
1979 5334 6.204688 TGATTCGTGCAAGTACATTTCTCTTT 59.795 34.615 0.00 0.00 0.00 2.52
1980 5335 5.700832 TGATTCGTGCAAGTACATTTCTCTT 59.299 36.000 0.00 0.00 0.00 2.85
1981 5336 5.120830 GTGATTCGTGCAAGTACATTTCTCT 59.879 40.000 0.00 0.00 0.00 3.10
1982 5337 5.316770 GTGATTCGTGCAAGTACATTTCTC 58.683 41.667 0.00 0.00 0.00 2.87
1983 5338 4.143115 CGTGATTCGTGCAAGTACATTTCT 60.143 41.667 0.00 0.00 34.52 2.52
1984 5339 4.081761 CGTGATTCGTGCAAGTACATTTC 58.918 43.478 0.00 0.00 34.52 2.17
1985 5340 3.743911 TCGTGATTCGTGCAAGTACATTT 59.256 39.130 0.00 0.00 40.80 2.32
1986 5341 3.322369 TCGTGATTCGTGCAAGTACATT 58.678 40.909 0.00 0.00 40.80 2.71
1987 5342 2.954316 TCGTGATTCGTGCAAGTACAT 58.046 42.857 0.00 0.00 40.80 2.29
1988 5343 2.425578 TCGTGATTCGTGCAAGTACA 57.574 45.000 0.00 0.00 40.80 2.90
1989 5344 2.534939 GCATCGTGATTCGTGCAAGTAC 60.535 50.000 0.00 0.00 41.93 2.73
1990 5345 1.658596 GCATCGTGATTCGTGCAAGTA 59.341 47.619 0.00 0.00 41.93 2.24
1991 5346 0.443869 GCATCGTGATTCGTGCAAGT 59.556 50.000 0.00 0.00 41.93 3.16
1992 5347 0.584785 CGCATCGTGATTCGTGCAAG 60.585 55.000 0.00 0.00 42.20 4.01
1993 5348 1.419532 CGCATCGTGATTCGTGCAA 59.580 52.632 0.00 0.00 42.20 4.08
1994 5349 2.451990 CCGCATCGTGATTCGTGCA 61.452 57.895 1.58 0.00 42.20 4.57
1995 5350 1.692148 TTCCGCATCGTGATTCGTGC 61.692 55.000 1.58 0.00 40.38 5.34
1996 5351 0.718904 TTTCCGCATCGTGATTCGTG 59.281 50.000 1.58 0.00 40.80 4.35
1997 5352 1.434555 TTTTCCGCATCGTGATTCGT 58.565 45.000 1.58 0.00 40.80 3.85
1998 5353 2.365948 CATTTTCCGCATCGTGATTCG 58.634 47.619 0.00 0.00 41.41 3.34
1999 5354 2.354510 TCCATTTTCCGCATCGTGATTC 59.645 45.455 0.00 0.00 0.00 2.52
2000 5355 2.364632 TCCATTTTCCGCATCGTGATT 58.635 42.857 0.00 0.00 0.00 2.57
2001 5356 2.036958 TCCATTTTCCGCATCGTGAT 57.963 45.000 0.00 0.00 0.00 3.06
2002 5357 1.670295 CATCCATTTTCCGCATCGTGA 59.330 47.619 0.00 0.00 0.00 4.35
2003 5358 1.268692 CCATCCATTTTCCGCATCGTG 60.269 52.381 0.00 0.00 0.00 4.35
2004 5359 1.024271 CCATCCATTTTCCGCATCGT 58.976 50.000 0.00 0.00 0.00 3.73
2005 5360 0.318107 GCCATCCATTTTCCGCATCG 60.318 55.000 0.00 0.00 0.00 3.84
2006 5361 0.032540 GGCCATCCATTTTCCGCATC 59.967 55.000 0.00 0.00 0.00 3.91
2007 5362 0.687098 TGGCCATCCATTTTCCGCAT 60.687 50.000 0.00 0.00 37.47 4.73
2008 5363 1.304796 TGGCCATCCATTTTCCGCA 60.305 52.632 0.00 0.00 37.47 5.69
2009 5364 1.438814 CTGGCCATCCATTTTCCGC 59.561 57.895 5.51 0.00 42.51 5.54
2010 5365 0.395586 TCCTGGCCATCCATTTTCCG 60.396 55.000 5.51 0.00 42.51 4.30
2011 5366 2.092598 ATCCTGGCCATCCATTTTCC 57.907 50.000 5.51 0.00 42.51 3.13
2012 5367 4.104383 TCTATCCTGGCCATCCATTTTC 57.896 45.455 5.51 0.00 42.51 2.29
2013 5368 4.413760 CATCTATCCTGGCCATCCATTTT 58.586 43.478 5.51 0.00 42.51 1.82
2014 5369 3.245514 CCATCTATCCTGGCCATCCATTT 60.246 47.826 5.51 0.00 42.51 2.32
2015 5370 2.310945 CCATCTATCCTGGCCATCCATT 59.689 50.000 5.51 0.00 42.51 3.16
2016 5371 1.921049 CCATCTATCCTGGCCATCCAT 59.079 52.381 5.51 0.51 42.51 3.41
2017 5372 1.365293 CCATCTATCCTGGCCATCCA 58.635 55.000 5.51 0.00 40.85 3.41
2018 5373 0.622665 CCCATCTATCCTGGCCATCC 59.377 60.000 5.51 0.00 32.08 3.51
2019 5374 0.034670 GCCCATCTATCCTGGCCATC 60.035 60.000 5.51 0.00 37.94 3.51
2020 5375 2.081955 GCCCATCTATCCTGGCCAT 58.918 57.895 5.51 0.00 37.94 4.40
2021 5376 3.580084 GCCCATCTATCCTGGCCA 58.420 61.111 4.71 4.71 37.94 5.36
2023 5378 1.377994 CAGGCCCATCTATCCTGGC 59.622 63.158 0.00 0.00 42.70 4.85
2025 5380 0.769776 ACCCAGGCCCATCTATCCTG 60.770 60.000 0.00 0.00 45.24 3.86
2026 5381 0.769776 CACCCAGGCCCATCTATCCT 60.770 60.000 0.00 0.00 0.00 3.24
2027 5382 1.763770 CACCCAGGCCCATCTATCC 59.236 63.158 0.00 0.00 0.00 2.59
2028 5383 1.073897 GCACCCAGGCCCATCTATC 59.926 63.158 0.00 0.00 0.00 2.08
2029 5384 1.697394 TGCACCCAGGCCCATCTAT 60.697 57.895 0.00 0.00 0.00 1.98
2030 5385 2.286045 TGCACCCAGGCCCATCTA 60.286 61.111 0.00 0.00 0.00 1.98
2031 5386 3.736224 CTGCACCCAGGCCCATCT 61.736 66.667 0.00 0.00 35.38 2.90
2039 5394 0.036732 TTTAGAGCACCTGCACCCAG 59.963 55.000 0.00 0.00 45.16 4.45
2040 5395 0.476338 TTTTAGAGCACCTGCACCCA 59.524 50.000 0.00 0.00 45.16 4.51
2041 5396 0.881796 GTTTTAGAGCACCTGCACCC 59.118 55.000 0.00 0.00 45.16 4.61
2042 5397 1.604604 TGTTTTAGAGCACCTGCACC 58.395 50.000 0.00 0.00 45.16 5.01
2043 5398 5.567138 AATATGTTTTAGAGCACCTGCAC 57.433 39.130 0.00 0.00 45.16 4.57
2044 5399 6.588719 AAAATATGTTTTAGAGCACCTGCA 57.411 33.333 0.00 0.00 38.44 4.41
2045 5400 5.739161 CGAAAATATGTTTTAGAGCACCTGC 59.261 40.000 0.00 0.00 37.65 4.85
2046 5401 6.961554 GTCGAAAATATGTTTTAGAGCACCTG 59.038 38.462 10.03 0.00 38.86 4.00
2047 5402 6.093633 GGTCGAAAATATGTTTTAGAGCACCT 59.906 38.462 24.38 0.00 46.92 4.00
2048 5403 6.255950 GGTCGAAAATATGTTTTAGAGCACC 58.744 40.000 24.38 14.23 46.92 5.01
2052 5407 8.029642 ACAGTGGTCGAAAATATGTTTTAGAG 57.970 34.615 10.03 2.78 38.86 2.43
2053 5408 7.972832 ACAGTGGTCGAAAATATGTTTTAGA 57.027 32.000 6.42 6.42 37.65 2.10
2054 5409 7.903431 GCTACAGTGGTCGAAAATATGTTTTAG 59.097 37.037 0.00 0.98 37.65 1.85
2055 5410 7.148373 GGCTACAGTGGTCGAAAATATGTTTTA 60.148 37.037 0.00 0.00 37.65 1.52
2056 5411 6.349033 GGCTACAGTGGTCGAAAATATGTTTT 60.349 38.462 0.00 0.00 40.13 2.43
2057 5412 5.123344 GGCTACAGTGGTCGAAAATATGTTT 59.877 40.000 0.00 0.00 0.00 2.83
2058 5413 4.634443 GGCTACAGTGGTCGAAAATATGTT 59.366 41.667 0.00 0.00 0.00 2.71
2059 5414 4.189231 GGCTACAGTGGTCGAAAATATGT 58.811 43.478 0.00 0.00 0.00 2.29
2060 5415 4.188462 TGGCTACAGTGGTCGAAAATATG 58.812 43.478 0.00 0.00 0.00 1.78
2061 5416 4.481368 TGGCTACAGTGGTCGAAAATAT 57.519 40.909 0.00 0.00 0.00 1.28
2062 5417 3.965379 TGGCTACAGTGGTCGAAAATA 57.035 42.857 0.00 0.00 0.00 1.40
2063 5418 2.851263 TGGCTACAGTGGTCGAAAAT 57.149 45.000 0.00 0.00 0.00 1.82
2064 5419 2.037902 TCATGGCTACAGTGGTCGAAAA 59.962 45.455 0.00 0.00 0.00 2.29
2065 5420 1.621317 TCATGGCTACAGTGGTCGAAA 59.379 47.619 0.00 0.00 0.00 3.46
2066 5421 1.262417 TCATGGCTACAGTGGTCGAA 58.738 50.000 0.00 0.00 0.00 3.71
2067 5422 1.485124 ATCATGGCTACAGTGGTCGA 58.515 50.000 0.00 0.00 0.00 4.20
2068 5423 2.100749 TGTATCATGGCTACAGTGGTCG 59.899 50.000 0.00 0.00 0.00 4.79
2069 5424 3.819564 TGTATCATGGCTACAGTGGTC 57.180 47.619 0.00 0.00 0.00 4.02
2070 5425 3.969976 AGATGTATCATGGCTACAGTGGT 59.030 43.478 12.53 0.00 32.91 4.16
2071 5426 4.313282 CAGATGTATCATGGCTACAGTGG 58.687 47.826 12.53 0.00 32.91 4.00
2072 5427 3.744942 GCAGATGTATCATGGCTACAGTG 59.255 47.826 12.53 12.46 32.91 3.66
2073 5428 3.244353 GGCAGATGTATCATGGCTACAGT 60.244 47.826 12.53 3.21 36.63 3.55
2074 5429 3.007723 AGGCAGATGTATCATGGCTACAG 59.992 47.826 14.17 3.78 46.73 2.74
2075 5430 2.974794 AGGCAGATGTATCATGGCTACA 59.025 45.455 14.17 10.27 46.73 2.74
2076 5431 3.692257 AGGCAGATGTATCATGGCTAC 57.308 47.619 14.17 0.00 46.73 3.58
2079 5434 1.072806 TGGAGGCAGATGTATCATGGC 59.927 52.381 0.00 8.66 39.62 4.40
2086 5441 2.501723 GAGGAACTTGGAGGCAGATGTA 59.498 50.000 0.00 0.00 41.55 2.29
2088 5443 1.558756 AGAGGAACTTGGAGGCAGATG 59.441 52.381 0.00 0.00 41.55 2.90
2118 5473 2.923121 CTATAGCCAACCATGCACAGT 58.077 47.619 0.00 0.00 0.00 3.55
2120 5475 1.679139 GCTATAGCCAACCATGCACA 58.321 50.000 14.13 0.00 34.31 4.57
2154 5510 2.038952 AGCAGCACTAACATCCAACAGA 59.961 45.455 0.00 0.00 0.00 3.41
2172 5528 0.603707 GAGCCACACTACTGCAAGCA 60.604 55.000 0.00 0.00 37.60 3.91
2176 5532 1.830587 CTGGGAGCCACACTACTGCA 61.831 60.000 0.00 0.00 0.00 4.41
2186 5542 3.300388 CACTTACTAGATCTGGGAGCCA 58.700 50.000 11.17 0.00 0.00 4.75
2190 5546 3.300388 CAGCCACTTACTAGATCTGGGA 58.700 50.000 11.17 0.00 0.00 4.37
2202 5558 1.777878 TGAAAGGAACCCAGCCACTTA 59.222 47.619 0.00 0.00 0.00 2.24
2213 5569 3.721087 TCCCTTCTCCATGAAAGGAAC 57.279 47.619 17.94 0.00 41.07 3.62
2238 5594 0.606401 ACTTGTCCGGAGCACAATGG 60.606 55.000 3.06 0.00 0.00 3.16
2268 5624 1.737363 GCATCTCTCCTCGACCAACAC 60.737 57.143 0.00 0.00 0.00 3.32
2277 5633 2.725008 CGGACCGCATCTCTCCTC 59.275 66.667 0.00 0.00 0.00 3.71
2286 5642 1.759299 ATTAGTAGGCCGGACCGCA 60.759 57.895 1.76 0.00 46.52 5.69
2288 5644 1.300697 GCATTAGTAGGCCGGACCG 60.301 63.158 1.76 6.99 46.52 4.79
2295 5651 4.998033 GGAGAAATACCAGCATTAGTAGGC 59.002 45.833 0.00 0.00 0.00 3.93
2299 5655 6.006275 ACATGGAGAAATACCAGCATTAGT 57.994 37.500 0.00 0.00 40.89 2.24
2310 5666 7.390440 CACTTCCACAACTAACATGGAGAAATA 59.610 37.037 0.00 0.00 43.32 1.40
2312 5668 5.530915 CACTTCCACAACTAACATGGAGAAA 59.469 40.000 0.00 0.00 43.32 2.52
2330 5686 1.586154 CCGTGGGCAATCACACTTCC 61.586 60.000 5.24 0.00 37.50 3.46
2346 5702 1.972795 ACAACACACCTGGTATACCGT 59.027 47.619 17.13 7.01 39.43 4.83
2354 5710 0.038166 ATAGCCCACAACACACCTGG 59.962 55.000 0.00 0.00 0.00 4.45
2356 5712 2.238521 CAAATAGCCCACAACACACCT 58.761 47.619 0.00 0.00 0.00 4.00
2362 5718 4.600692 AAACTTCCAAATAGCCCACAAC 57.399 40.909 0.00 0.00 0.00 3.32
2367 5723 5.014202 TGTTCCTAAACTTCCAAATAGCCC 58.986 41.667 0.00 0.00 36.30 5.19
2381 5737 7.088589 GCTTAGAGCATGAATTGTTCCTAAA 57.911 36.000 0.00 0.00 41.89 1.85
2407 5763 0.966179 ACGTGTATGAGCTGGTCACA 59.034 50.000 12.27 3.87 38.28 3.58
2408 5764 2.163815 AGTACGTGTATGAGCTGGTCAC 59.836 50.000 12.27 1.02 38.28 3.67
2413 5769 3.303197 CGGTCTAGTACGTGTATGAGCTG 60.303 52.174 0.00 0.00 0.00 4.24
2429 5785 1.259609 CTAACACACCCACCGGTCTA 58.740 55.000 2.59 0.00 42.04 2.59
2430 5786 1.477685 CCTAACACACCCACCGGTCT 61.478 60.000 2.59 0.00 42.04 3.85
2431 5787 1.004200 CCTAACACACCCACCGGTC 60.004 63.158 2.59 0.00 42.04 4.79
2432 5788 2.522367 CCCTAACACACCCACCGGT 61.522 63.158 0.00 0.00 46.31 5.28
2440 5796 1.053424 TCAGACCACCCCTAACACAC 58.947 55.000 0.00 0.00 0.00 3.82
2457 5813 2.938451 GGATGATCGCATGAACAAGTCA 59.062 45.455 0.00 0.00 41.67 3.41
2462 5818 2.431782 TCTGAGGATGATCGCATGAACA 59.568 45.455 0.00 0.00 34.11 3.18
2463 5819 3.058450 CTCTGAGGATGATCGCATGAAC 58.942 50.000 0.00 0.00 34.11 3.18
2465 5821 1.000618 GCTCTGAGGATGATCGCATGA 59.999 52.381 6.83 0.00 34.11 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.