>input_sequence_78580
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-----------ATGGAGGA---AGGTGGAGGTATGGTC---CGGCCGGACGGCCATTCTTCTCCGATGGAAGCAGCTTCC
CATG---------------CAGTGGCAGCAGCCGCTGCTTCTCTGGACCTGTCTCTAACACTGCCCCCCGTGCG------
---------------ACCACCACCACCACCTTCCTCCCCTTCTTGGGCTGCAGCACATGTTGTTCTTCCTTCTTCTACAG
GCGCTGGGGGCGACGACCATGGCCATGGTCGTGG---GAGGCTCTTCTCGTGCCTCTTCTGCGAGAAGACCTTCCTCAAG
TCCCAGGCGCTGGGCGGCCACCAGAATGCGCACAAGAAGGAGAGGGCCGCCGGCAGCTGGAACGCCCACCTCTACCTTCC
CGCTGCGGGG---GCAGCCACCCACCACAACCAGCGGGCCGCCGCAACGCCCATCCTGCCGGCGACCTGGCCGCCCGCGC
GTACGCCTACTAGTACGCTTGACGACCAC---------CACC------ACCAGCAGCAGCTTGATCTTAGCCTCAAGCTC
TAG-----------------------------------------------------------------------------
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----
>chr3D_1_TraesCS3D01G008000
AAAGAATACGTAAGTTAAGTTAACAAAATGGTACTTTCTCTGACCGACTCACAATTAGTACAGCTTTAATATGGGATTGA
AGGGAGTAGTTTTTTCTTTTCATCAAAACCTAACACAACAATAGTCACTAGAACAGTTACATGATGATGCATGGTCGTCG
ACGTGAAGCACTATTGCTCTACTAGCCAGCGAACTGTTAAAGATCTCCAGATCTTTTTCCCTTTGACAGCAATGATCCGC
ACATCTGCATGCATGTAGTAGCCACGATCGAGGTAG------------CTCCCGAGGTTCCTCTGATATATCTACGGCTA
GCCGGCGGCACATCAAAATAATGCCAACCTCCCTAATTTAGCAAGTGGTAGCATGCCTTCCAC-----------------
---ACTCCGTG-CTTGGTTTGATGCTATGGTTCGTTCTTCAGTCTACACTACAAGTACAAGCTAATACAAATGTGTGCAT
GGAGTCGAACTAATCAGCAAAGAGTTTTGTTTTGGTGAAAAAATGGACAGATGCCATATGTTAAGTAACACGAGCCCTTA
AAAATGCCCT-TTTAAAAACTAAAAAATCACATCAAATAAAATGTGAAATTGAACATCGTCTTTCGAAAT----------
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---------------------------------------------------------------------------AAATC
CACGTAAATCTAAGACTTCAACTCCAATGGACCAAGGAATTTAACCTTGCTTGCTACACCCAATCCACGATAGTTGTTTT
TT-GCTTGCCTTGATATATTTTGGCGAGATCTACCCCCACTAGATTTTGTTTGTGGGTCCACAC-----CCCTATGAATA
ACCCATGATGAGAACTGATGGTCGACAAGGATCACTACTACCAAAACTACTTTAACCGCTGTAGACATGCTGGACCTCAA
AAGTCCAAGGTCCTTTGTCATTAGCGCGCTACAGAAGGTGGGGCCAGCCGTGCTGCTTGCAATAAT----GCGACTCCCA
CATTTAGGAAGTTGTAGGCTTCCTTTCATGGCAGC--TAACAAACTTCGCCACTCAAAACCCACTCCAGAGCTTAGATCC
ACACCACTTCCATGGAGGA---AGGTGGAGGTATGGTC---CGGCCGGACGGCCATTCTTCTCCGATGGAAGCAGCTTCC
CATG---------------CAGTGGCAGCAGCCGCTGCTTCTCTGGACCTGTCTCTAACACTGCCCCCCGTGCG------
---------------ACCACCACCACCACCTTCCTCCCCTTCTTGGGCTGCAGCACATGTTGTTCTTCCTTCTTCTACAG
GCGCTGGGGGCGACGACCATGGCCATGGTCGTGG---GAGGCTCTTCTCGTGCCTCTTCTGCGAGAAGACCTTCCTCAAG
TCCCAGGCGCTGGGCGGCCACCAGAATGCGCACAAGAAGGAGAGGGCCGCCGGCAGCTGGAACGCCCACCTCTACCTTCC
CGCTGCGGGG---GCAGCCACCCACCACAACCAGCGGGCCGCCGCAACGCCCATCCTGCCGGCGACCTGGCCGCCCGCGC
GTACGCCTACTAGTACGCTTGACGACCAC---------CACC------ACCAGCAGCAGCTTGATCTTAGCCTCAAGCTC
TAGCTAGCTAGCG----TTCTCTAGT-----GTCAACGCACATAT-ACGTGCGTT-TTGCTTCTCCTCATAACAACTA--
---------------CCTAGTGCGTGCGTGTGTGCACTCAAGTATCT--GTGGAAGCAACATCTGTTGATCATTGTTAGT
---TCACTTGCACTGCTCGCATGTTGTCCATTTTACTTTGCTGAATTTTGCCCCGACATTTTACTTCGCAAAAAGGAGTA
GATCATTAACGCATGTTGATGGACAGGGG-------ATATATCACTGACGAACTATTACTACTACCTCTGCAGCACAATA
AAGCTTCCTAACTAGAACGTGAGATAAAACATTCATATTTTTTGATCCGACATAAATACTAAAAATAAGATTTTTTTTAA
CAAAACAAATCTTAATTCGTATATTTATGTTGGATAAAAAAATCTGAAAGTTTTATCCTAGATTCTAGATAGAAAGCCTT
GCTGTGCTGCGGAAGTTTGAAGTTCAAAACATGTTCTATGTGAGAGAAATAAAAAAGAGAAATGTACTTGCACGAATCAC
GATGCGGAAAATGGATGGCCAGGATAGATGGGCCTGGGTGCAGGTGCTCTAAAACATATTTTCGACCACTGTAGCCATGA
TACATCTGCCTCCAAGTTCCTCTGTGGGTGTTACTGTGCATGGTTGGCTATAGCCGGCGGAGGCCC-CGTCTGTTGGATG
TTAGTGCTGCTTGCAGTAGTGTGGCTCCCAGATCTAGTAAGTGGCTGGGTTCCTTTCATGGAGAAGGGATCTTCCATTGT
GCTCCGGACAAGTGTCCAAGTATGTGTTGGTCGAGGAGAGATGCGGTCCGGCCTACTAATGCTGGTATTTCTCCATGTTA
GTTGTGGAAGTGTGATTGCCCACGGTATACCAGGTGTGTTGTGGGCTATTTGGAAGTTTAGGAACAATTCATGCTCTAAG
CATGTGACCAGCTCATACACGTACTAGACCGGTGGGTGTGTTAGGGGTGGTCTGACTTGTTCATGCGATCATCCTCAGAG
CATT
>chrUn_74
-------------------------------------------------------------------------GGATTGA
AGGGGGTAGTTTTTTCTTCTCATCAAAACCTATCACAAGACTAGTCACTAGGACAATTACATGATGATGCATGGTCGTCG
ACGTGAAGCACTATTGCTCTACTAGCCAGCGAACTGTTAAAGATCTCCAGATCTTTTTCCCTTTGACGGCAATGATCTGC
ACTTG----TGCATGTAGTAGCCACGATCGAGGTAG------------CTC------------TGATATATGTACGGCCA
GCCGGCGGCACATCACAATAATGCCAACCTCCCCGATTTAGCAAGTGGGAGCATGCCTTTCATGCCCATGGCATCGTCCA
CGTACTTCGTGTCTTGGTTTGATGCTAAGGTTCGTTCTTCAGTCTACACTACGTGTACAAGCTAATACAAATGTGTGCAT
GGAGTCGAACTAATCAGCAAAGAGTTTTGTTTTGGTGAAAAA-TGGACAGATGCCATACGTTAAGTAGCACAAGCCCTTA
AAAATGCCCT-TTTAAGAACTAACAAATCACATCAAATAAATTGTGAAATTGAACATCGTCTT-----------------
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--------------------------------------------------------------------TTGAAATAAATC
CAAGTAAATCTAAAACTTCAACTCCAATGGACCAAGGAATTTAACCTTGCTTGGTACACCCAATCCAAGATAGTTGTTTT
TTTGCTTGCCTAGATCTATTTTGGCGAGATCTACCCCCACTAGATTTTGTTTTTGGGTCCACTCCATAGCCCTATGAGTA
ACGCATGATGAGAACTGATGGTCGACAAGGATCACTACTACCAAAACTACTTTAACCACTGTAGACATGCTGGACCTCC-
AAGTCCAAGGTCCTTCGTTGTTAGCACGCTACAGCCGTTGGGGCCCACTGTGCTGCTTGTAGTAATTAATGCGACTCCCA
CATTTAGGAAGTTGTAGGCTTCCTTTCATGGCAGCTATAACAAACATCGCCACTCAAAACCCACTGCATAGC-----TCC
ACACCACTTCCATGGAAGGTGTAGGTGGAGGTATGGTCGTCCGGCCGGACGGCCATTCATCTCCTCTGGAAGCAGCTTCG
CCTGCGGTGGC------------GGCGGCAGGCGCTGCTTCTCTGGACCTGTCTCTAACACTGGCCCCTGTGTCACCACC
ACCACCACCACCGCCACCACCACCACCACCTTCCTCCTCTTGTTGGGCTGCAGCACATGTTGTTCTTCCTTCTTCTACCG
GCACCGGTGGCAATTACCATGGCCATGGTGGTGG---GAGGCTCTTCTCGTGCCTCTTCTGCGAGAAGACCTTCCTCAAG
TCGCAGGCGTTGGGGGGCCACCAGAACGCGCACAAGAAGGAGAGGGCCGCCGGCAGCTGGAACGCCCACCTCTACCTTCC
CGCGGCAGGG---GTAGC---------CAACCAGCCGGCCGTCGCGACATCCATGCTGCCGCCGACCTCGCAGCCCGTAC
GTACGCCTACTAGCAGGCTTGTCGACGAC---------CACGAGCAGCAGCAGCAGCAGCTTGATCTTAGCCTCAAGCTC
TAGCAAGCTAGCTAGGGTTCTGTAGTGTCAAGTCAACGCACATAT-ACGTGCGTC-TTTTTCCTCCTTAGATCATCTA--
---------------GCTTGAGCGTGGGTGTGTGCACTCAAGTATCT--GTGGAGGCAACTTCTGTTGATCATTGTTAAT
---TTGCGTGCACTACTCGCATGTTGTCCATTTTACTCTGCTGAATTTTGCCCCGACTGG---CTTTGCAAAAAAGAGTA
GCTCACTAACGCATGTTGAT------------------------------------------------------------
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----
>chr3B_74
-------------------------------------------------------------------------GGATTGA
AGGGAGTAGTTTTTTCTTTTCATCAAAAGCTATCACAACACTAGTCACTAGGACAATTACATGATGATGCATGGTCGTCG
ACGTGAAGAACTATTGCTCTACTAGCCAGCGAACTGTTAAAGATCTCCAGATCTTTTTCCCTTTGAAGGCAATGATCTGC
ACTTC----TGCATGTAGTAGCCACGATCGAGGTAGCTCCCGGGATTCCTC------------TGATATATGTACGGCCA
GCCGGCGGCACATCACAATAATGCCAACCTCCCCGATTTAGCAAGTGGGAGCCTGCCTGTCATGCCCATGGCATCGTCCA
CATACTTCGTG-CTTGCTTTGATGCTATGGTTCGTTCTTCGGTCTACACTACAAGTACAAGCTAATACAAATGTGTGCAT
GGAGTCGAAGTAATCAGCAAAGAGTTTTGTTTTGTTGAAAAA-TGGACAGATGGCATATGTTAAGTAGCACAAGCCCTTA
AAAATGTTTTCTTTAAGAACTAAGAAATCACATCAAAAAAATTGTAAAATTGAACATCATCTT-----------------
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--------------------------------------------------------------------TGGAAATAAATC
CACATAAATCTAAAACTTCAACTCCAATGGGCCAAGGAATTTAACCTTGCTTGCTACACCCAACCCACGATAGTTGTTTT
TT-GCTTGCCAAGATATATTTTGGCAAAAACTACCTCCACTAGATTTTGTTTGTGGGTCCTCAC-----CCCTATGAATA
ACGCATGATGAGAACTGATGGTCGACAAGGATCACTACTACCAAAACTACTTTAACCACTGTAGACATGCTGGACCTCC-
ATGTCCAAGGTCCTTTGTCGTTAGCGCGCTGCAGCCGTTGGGGCCCACTGTGCTGCTTGTAATAATTAATGCGACTCCCA
CATTTAGGAAGTTGTAGGCTTCCTTTCATGGCAGCTATAACAAACGTCGCCACTCAAAACCCACTGCATAGC-----TCC
ACACCACTTCCATGGAGGA---AGGTGGAGA---------------------------------TATGGAAGCAGCTTCG
CCTGCGGTGGC------------GGCGGCAGGCGCTGCTTCTCTGGACCTGTCTCTAACACTGGCCCCTGTGTCACCA--
-------------CCACCACCAGCACCACCTTCCTCCTCTTGTTGGGCTGCAGCAGATGTTGTTCTTCCTTCTTCTACAG
GCGCAGGTGGCAATTACCATGGCCATGGTGGTGG---GAAGCTCTTCTCGTGCCTCTTCTGCAATAAGACCTTCCTCAAG
TCGCAGGCGTTGGGGGGCCACCAGAACGCGCACAAGAAGGAGAGGGCCGCCGGCAGCTGGAACGCCCACCTCTACCTTCC
CGCAGCGGGG---GCAGC---------CAACCAGCCGGCCGCCGCGACGTCCATGCTGCCAGCGACCTGGCCGCCCGCAC
GTACGCCTACTAGCAGGCTTGTCGACGACCACGAGCAGCAGC------AGCAGCAGCAGCTTGATCTTAGCCTCAGGCTC
TAGCAAGCTAGCTAGGGTTATGTAGTGTCAAGTCAACGCACATAT-ACGTGCGTTTTTTTTCCTCCTTAGATCATCTA--
---------------GCTTGAGCGTGCGTGTGTGCACTCAAGTATCT--GTGGAGGCAACTTCTGTTGA------TTAAT
---TCACGTGCACTACTCGCATGTTGCCCATTTTACTTTGCTTAATTTTGCCCCGATTGG---CTTTGCAAAAAGGAGTA
GCTCATTAAGGCATGTTGATCGACATCGATATATGAATATATCACTGCCAAACTGTTACTACCTCTGTAGCC--------
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--------------------------------------------------------------------------CCATGA
AAGATCTGCCTCCATGTTCCTCTGTGGGTGTTCC--TGCGTGGTTGGCCATAGCCGGTGGAGGCCCACGCCTGTTGGATG
TTAGTGCCGCTCGCAGTAGTGCGGCACCCAGATCTAGCAAGTGGCTGGCTTCCTTTCATGGAGAAGGGATCTTGCATTGT
GCTCCGGACAAGTGTCCAAGTATCTGTTGGTCCAGGAGAGACG-GGTCCGACCTGCTAATGCTGGCACTTCTCCATGTTA
GTTGTCGAAGTGTGATTGCCCCCGGTATATCTGGTGTCTTGTTGGCTATTTGGAAGCTTAGGGAAAATACATGCTCTAAG
CA--TGACTAGCTCATACACGTACGGT-CCGGTGGTTGTGTTAGGGGTGGTCCGACTCATGCATGCGGTGATCC------
----
>chr3B_592
CCCACTAGAGTTGGTTTGTGGGGTTCACCCCTGTGAATAAAGCACAATAAGAAATTGATGGTCGACAAGGATCACTACTA
CCAAACTGCTTTACTGCTGTAGACGTGCTGGACCTCGAACTCATATGTCGTTATTAGCTACAACTGTTGTGGCCCACTTT
ATGCTTGCTATAATGCCTCCCGCCCTCCTGCATTTAGGAAGTGCTATGCTTCCTTTCAAGGCGGCTAACAAGCCTCCAAC
ACCTCTAGCTAGGGAAGAAGGTATCTTCCTGCTGGAGCCGGACGGCAATTATTCATGTACTCCCTCCGTAAAGAAATATA
AGATTGTTTAGATTACTATTTTAGTGATCTAGACGCTCATATACTTCTTTACAGGGGAGTATCAATGGAGGCCACTTCTT
TTTGACATTGTTAGTGTACGTTGCCACACATGCATGCACTGCTAAACTGTTTGCGCTACTCCTACCGCTGTATGCGCTAC
TCCTCCTAGCGGCAGCAATAGGATCATGGGGTGATGGGTATGAACCTGGGCTAGGAACATGTCCATTTTTCCTGCTGTAT
TAACCACTAATGGACACTGTACATTTGGCTGTAGCCCTTGCCGATATTTAACAGTTGATGAGCGTGAAACCCTTTAGTAC
GGGGTTTAAGCGTGCAGTGGATAATTGTATAGTCGTTACCTTTGATCCAACCTTAATTTCTGTTATAGTGGGAATATAGT
TATGTGGCCCCGGTTGGCTTTTTCAAGAAAAATACTCAATAACTAATGGAGTGTATATTACATCTTGTAGCCATGATGTA
GCCAATGGATGTCCTTGTGGTTATGTGTTCCCTGGTAGCTTCCCGTAGACTGGAGGGGGCATCCAGTGCCAATACTTAAT
GGGCTCCCAGATTTAGCAAGTGACGTGCTTCCTTTCATGGCCACCACCCCCTTTATAAAACTCAGTCTCCACCGGCCGCC
ACTAAGAGCTCACACCTCCTCGTCTCACCATCTTCTCCGATTAGTTCATGGAGGCTCAAGATCCCTCTTCAGCAGCAGCA
GCTCCCCTGGACCTGTCTCTCACGCTAGCCCCCATGTCTCTTTGGGCTGCTCATCCTTCTGGCGGTGGCGGTCGCCGCCG
CAGTGGTGGCGGCACGACATCGAGGCTCTTCTCTTGCCTATTCTGTGAGAGGAAGTTCTTCAAGTCGCAGGCACTAGGAG
GCCACCAGAATGCGCACAGGAAGGAGAGGGTGGTCGGCAGCTGGAACCCGCACCTCTACCTCCCTGACCATCATGGTGAC
GCCGCGCTGACCACTGCAACGGCGCGCCTTAAAAGCAACGACGACCACAAGCTGCAGGAGCTTGATCTTAACCTCAAGCT
TTGATTAGCTCTATCTCGTGTGTACGCGACAGTACGTACGGTCATTGCTATGTATAGTACGTGCACTGCTAGTTTCGTGT
AGAAATAATTTCCTCTATGCATGCACGCCTTGTCCTCCCATGTATGAAATCACAATGATTTTCTTCGTCTTTCTGCTGCA
TGTGTGGACACTGCACTGTATTGAACATAGCCCATGTCATGCGTACATGCATATTGATTTTTAGTTTTGCAAAATATAAC
TAGTTTTTCAGTTTATTCTGAAGTAACATTCAATTTAGCTAGTAATGTTTCTTGTGGATACACCTCTGATGGATACCGTC
TTTGGCAGTTTCTTGTGGTAAAACAACATGAGACAATCATATCTCTGGCAAGCCAGCAAAATCATCGTCTAGAGATATGC
TCTTTCTTGGACGGGTCCCCCGAATGTCTCTCATATATAATTTTTTTTTTCACTTTTTCAGTGACCCTTCACATCTAACA
AGTGGTAAAAACTACACATAAAGTATTGAGTCCCTCGAGATGGCATGTAATGTACTAGTGCATACATAAGGTCCCCTTTT
GTGGAACAATAATAAGGTAACAACAAGTAAATATATGGCTACTCGAAGAAAAGAAAAAAGTAAATATATGGCTGCTGGAG
TTAAATTAACTAGAAATAAGATGAAGCTAACACCAAAACTAATCCCATATCATGTGGTAATAAATTAGCACTGTCTTGCA
AGAGACCATGAGTACTGCACAGTGGAAACTTGAAGTGTGTGTCTGGCCAGTCTTGGCATGATCTTTAGGGCTTAATCGGG
AGGAATTGACTGGCCAGAGCGTGGAGGCATAATTATTGCATATGGTACGCATCTACTTTAGGTCATGTTTAGTTTTTTTT
ATGTGTGGTTCTCTGCACTCGGACGCAACACTACTACTATTATTAATATATATTTTTGTCCAGCTAGCCTTCATTAACAC
CTAATTACTTTGTTGATCCCTCAAAAAGCTGATTTGCATCTCTAACACCTGGAAGAGTCTGGCCAGTCATACTGGTGTAT
CTGAGAGGGCGTCGCTCCTACTACTCCGTTCCATAATATAACACTATATATGACATTTTTGCAAGCTAAAACAGCTTGCA
AAAACGTCTTATATTACGGGATGGAGGAAGTAATTATATTGACGCTTTATGCCACATCATTCTTAATGGCCCCTTATGAT
ATAGTTTTGCTAGTTGTGCCGTGATGGTGACCTGACAGGCACCTGAGCCAAAAAAGCTTATATATCGCCTCCGTTAGCGA
TGCTCTTATAGACTCGCCAAATCATTTGACTACACTTATAAATTTGGGCTATATGGGAGGTCAGATTTGCAAATAAGTTC
TTAAAGAGGTCAGTGAACGGATCAAGTTTTTGAAAGGTTCATTTAGTACAAATAATACTGTCTGCTCCCACATGATGCAA
CTGGAAGTCTTTCTCCTACCTAAAGAAAATGGAAGTTAGATTAAAAAATGGTACTCCTACTTGTTTCTTTTCCTCAAAAC
ATAACACAACACTAGTCACTGCGACAATTACTCTACTAGCCAGCGTGGCAAACTGTTAAAGATCTCCAGATATTTTGCCC
TTTGACAGCAATGATCTACACTTGTGCGGGTATGTAGGCATGCATGCAGTAGCCACGATCGAGCTAGCTCCCGAGGTAAG
TCTGATATATGTAAGGCTACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATC
ACATCGCAATAATGCCAACTTACCCGATTAGCAAGTGGTAGCCCGCCTTTCATGCCCATGGCATCGCCACATACATCGTG
TCTTGCTTTGATGATATGGCTCGTTCTTCAGTCTACACCAGGAGTACAAGCTAATCTGTGCATGCAGCCAAACTAATCAG
CAAAGAGCTTTTTTTGTGAAAAAAGTTCAGTTGCCATATATTGAGTAACACAATATTGATGATATGTTTCATCACAAGGA
TGGGGTCGGTGTTTTTATATTTCTTTTTATTTTCGTTCTTGGTTGTGTGCATCCTTAATATCTTTCAATATCTTGTTGGT
GTAGAGGCTGGGTGTAATTGATATCTTTGCGATATTAATATATTCACTTTATAAAAAAAATTGAGTAGCACAAGCCCTTG
CAAAAATGCCCTTATAAAGACTGAAAAATTGAACATTGTCCCACACTAAATGAACATCAACGAGAATCTTGAAATAAATC
CACGTAAATCTAAAACTTCAACTCCGATGGACCAAGGAATTTAACCTTGCTTGCTACAACCAATCCACGATAGTTGTTTT
TT-GCTTGCCTAGATATATTTTGGCGAGATCT------------------------------AC-----CCCTATGAAGA
ACGCATGATGAGAACTGATGGTCGACAAGGATCACTACTACCAAAACTACTTTAACCACTGTAGGCATGCTGGACCTCC-
AAGTCCAAGGTCCTTTGTCATTAGCGCGCTGCAGCCATTGGGGCCCACTGCGCTGCTTGCAATAATTAATGCGACTCCCG
CATTTAGGAAGTTGTAGGCTTCCTTTCATGGGAGCTATAACAAACTTGAT------------------------------
----CACTTTCATGAAGGA---AGGTGGAGGTATGGTCGTCCGGCCAGACGGCCATTCATCTACTATGGAAGCAGCTTCG
CCTGCGGTGGC------------GGCGGCAGGCACTGCTTCTCTGGACCTGTCTCTAACACTGGCCCCTGTGTCACCA--
-------------CCACCACCAGCACCACCTTCCTCCTCTTGTTGGGCTGCAGCAGAAGTTGTTCTTCCTTCTTCTACAG
GGGCCGGTGGCAATTACCATGGCCATGGTGGTGG---GAGGCTCTTCTTGTGCCTCTTCTGCGATAAGACCTTCCTCAAG
TCGCAGGCGTTGGGGGTCCACCAGAACGCGCACAAGAAGGAGAGAGCCGCCGGCAGCTGGAACGCCCAACTCTACCTTCG
CGCGGCAGGG---GCAGACA---------ACCAGCCGGCCGCCGCGACGTCCATGCTGCCAGCGACCTGGCCGCCCGC--
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>chr3D_759
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---CATGATGAGAACTGATGGTCGACAAGAATCACTACTACCAAAGCCAC-TTTACTACTGTGGGCATGCTGGTGATGG-
ACCTCCAA-GTCCTTTGTCGTTAGCGTGCTACTGCC----------------CTGCTTGCAATAATTAATTCGACT-CCG
CATTTAGGAAATGCTAGGCTTCCTTTCATGGCTGC------AAACCTCGCCACTCTAAACCAACGCACAACTAGG--CT-
-----------AGGGAAGA---AGGTGGAGGT---GTCCTCCGGCTGGCCGGCCGTTCTCCTCGGATGGAAGCTTCTCAT
GCCGCCGCGGCTGGGGCGACAGAGGCAGCAGCTGCTGCTTCTCTAGACCTATCTCTAGCACTAGCCCCTGTG--------
----------------CCACCACCGCCACCTTGCTCCTCTTCTCGGGCTGTAGCAGATGCTCTTCTTCCTTCT---AGGG
GTGCCGGCGGTGACAGCCCCGGCCATGGTGGTGGCTCGAGGCTCTTCTCGTGTCTCTTCTGCGAGAAGACCTTCCTCAAG
TCGCAGGCACTGGGGGGCCACCAGAACGCGCACAAGAAGGAGAAGGCCGGCGGCAGCTGGAACGCCCACCTCTACCTCCC
CGCGGCGGCGGGAGCAGCCACCCACCACAACCAGCCGGCCACCTTGACGTCCATGCCACCGGTGACCCGGCCGCCCGCGA
GTACGCCCACTAGCAGGCATGACGATGAC---------CACG------AGCAGCAGCAGCTTGATCTTAGCCTCAGGCTC
TAGCTAGC--------ATTCTCTAGTGTCAAACCGTCAATATATTCACGTCCGTGCTTTTTTCTTCTTATATCAACTA--
---------------GCTTGACC--------GTGCATTCAAGTATCT--GTGGAGGCAACTTGCTTTTATCATTGTTATT
AAATTGCGTGCACTACTCGCG-------TGTTTGACCTTTCTGAATTTTGCGCCGAGTAG---CTTTGTAAAAAGGAGTA
GCTCAATAACGCATGTTGGTCGACAGGG--------ATATATCACTGCCAAACTGTTACTACGTACTCTCT---------
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>chr3D_909
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-----------------------------------------------------------------------------CCG
CATTTAGGAAGTGCTAGGCTTCCTTTCATGGCCGCTA--ACCAACCTCGCCACTCTAAACCCACGCACTTGTACGTACT-
-----------AGGGAAGG---AGGAGGGAGT---AGCTTCCCGC-------CTGTTCTTGTCCGATGGAAGCAGCTCCT
CCTCCAGCGGC------------AACGGCAGCGGCAGCTTCTCGAGACCTGTCTCTAGCACTGTCACACTCACACAT---
------------------------GCCACCATCTTCCTCTTATTGGGCTGCAGCAGGAGATGCTCTTCTTTCTTCTAGGG
GTGCCGG---------------CCATGGTGGTGGGGCGAGGCTCTTCTCGTGCCTCTTCTGCGACAAGACCTTCCTCAAG
TCGCAGGCGCTGGGGGGCCACCAGAACGCGCACAAGAAGGAGAGGGCCGCCGGCAGCTGGCACGCCCACCTCTACCTCCC
TGCGGTGGCGGGAGCAGCCACCCACGACAACCAGCCGGCCACCGCGACGTCCATGCCACCGGTGACCCCGCCGCCCACGA
GCACGCCCACTAGCTGGCTTGACGACGAC---------CACG------AGCAGCAGCAGCTTGATCTTAGCCTCAGGCTC
TACCTAGCAAGCTAGCATTCTCTAGTGTCAAACTATCG----ATGCACGCCCGTGCATTTTTCTTCTCCTTCTTTTGATC
ATTGTTTATTTACGTGCTAGAGCGTAAGTGTGTGCGTTCAAGTATCTGAGTGGAGGCAACTTCTTTTGATCATTGTTAAT
---TTACATGCACTACTCGCATGTTTTCTGTTTCACTTTGCTGAATTTTGCTCCGAGTAG---CTTTGCAAAAAGGAGTA
GCTCAATAACGCATGGTGATCGACATGG--------ATATATCACTACCAAACTGTTACTAC------------------
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----
>SNPs
SSSSSSSSS--SS---SSSSSSSSSS-SSSS-SSSSSSSSS-SS-S-SSSSS----SS-SSSSSSSS-SS--S-------
--------------------------------S-------S----------S---S------------------------
-----------------------------------------------------------------------------S--
--S---SSS------------------------------------------SSS-S--S-SS---------S--------
---------------S-----------------SS------------------------S--------------------
------S-------------------------------------------------------------------------
-------------------------------------------------------------------S---S--------
----------------S------S-----------------S---------------------SS----S----------
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-------------S------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--S------------------------------------------------------S--------------------SS
----------------------------------SS-S-------SS-S-------------------------------
--------------------------------------------------------------------S---SSSS----
-------------------------------------------------------------------------------S
-S--------------------S----------------------------------------S---------S------
-------------------------------------S------------------------------------------
----S--S------S--------------S--------------------------------------------------
--S-----------S-----------S-----------------------------------------------------
---S-------------------------------S---------S---S----S-------------------------
-------------S-S----------S----------------------S------------------------------
------------S---------------------------------------------SS-----------S--------
---------------S----S---------------------------------S-----S-----------------S-
-------S------S------------------------------------------SSSSSS---S-------------
-S------------------S-------S------------------S-S----S-------SS-------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
S-S-----------S-----------------S-SS---S--------S--------S-----------S----------
-------S---S---------S---S-----------S----------S------------------------S------
-----------------------S--------S--------S-S------S---S----------S-S------------
-----S---------------S-------S-S-----S----S-------------S-----S-S---S-----------
--SS----S---------------SSSS-------S----------------S----SS-S------S-S----SSSSSS
SSSS
>forward_248
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--------------------------------------------------------------------GCAATGATCCGC
ACATCTGC------------------------------------------------------------------------
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----
>reverse_5361
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GATGCGGAAAATGGATGGCC------------------------------------------------------------
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----
