Multiple sequence alignment - TraesCS3D01G003100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G003100 chr3D 100.000 3340 0 0 1 3340 1317327 1313988 0.000000e+00 6168.0
1 TraesCS3D01G003100 chr3B 84.421 2497 138 115 977 3331 3308705 3306318 0.000000e+00 2224.0
2 TraesCS3D01G003100 chr3B 83.488 1508 98 72 1311 2727 5408079 5409526 0.000000e+00 1266.0
3 TraesCS3D01G003100 chr3B 84.169 638 41 27 2726 3335 5409553 5410158 6.260000e-157 564.0
4 TraesCS3D01G003100 chr3B 81.024 332 21 23 978 1281 5407768 5408085 3.350000e-55 226.0
5 TraesCS3D01G003100 chr3B 86.585 164 11 7 218 370 3309669 3309506 1.590000e-38 171.0
6 TraesCS3D01G003100 chr3B 81.714 175 16 8 371 535 3309370 3309202 7.520000e-27 132.0
7 TraesCS3D01G003100 chr3A 81.478 2381 155 134 801 3084 7654971 7657162 0.000000e+00 1690.0
8 TraesCS3D01G003100 chr3A 79.586 338 30 18 48 347 7653855 7654191 4.370000e-49 206.0
9 TraesCS3D01G003100 chr5B 83.750 240 25 9 147 372 528388307 528388546 7.260000e-52 215.0
10 TraesCS3D01G003100 chr6B 85.938 192 18 6 176 358 682368393 682368584 2.630000e-46 196.0
11 TraesCS3D01G003100 chr7D 80.000 85 8 6 1421 1503 38795009 38795086 2.000000e-03 54.7
12 TraesCS3D01G003100 chr1B 100.000 28 0 0 957 984 647889562 647889589 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G003100 chr3D 1313988 1317327 3339 True 6168.000000 6168 100.000000 1 3340 1 chr3D.!!$R1 3339
1 TraesCS3D01G003100 chr3B 3306318 3309669 3351 True 842.333333 2224 84.240000 218 3331 3 chr3B.!!$R1 3113
2 TraesCS3D01G003100 chr3B 5407768 5410158 2390 False 685.333333 1266 82.893667 978 3335 3 chr3B.!!$F1 2357
3 TraesCS3D01G003100 chr3A 7653855 7657162 3307 False 948.000000 1690 80.532000 48 3084 2 chr3A.!!$F1 3036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 1187 0.033601 ATTTGGCATGGACGGGCTTA 60.034 50.0 0.00 0.00 0.0 3.09 F
886 1437 0.389948 AAGTAGCACCACGTAGCAGC 60.390 55.0 9.11 0.75 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2965 0.093365 ATTAAAACGTACGTGCGCCG 59.907 50.0 26.01 15.25 44.03 6.46 R
2647 3394 0.260816 AATCAGCACCATGGAGGCAT 59.739 50.0 26.84 14.72 43.14 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.934023 TGTAATTCTAGGTCTTGGTTTCAATT 57.066 30.769 0.00 0.00 31.75 2.32
26 27 9.010029 TGTAATTCTAGGTCTTGGTTTCAATTC 57.990 33.333 0.00 0.00 31.75 2.17
27 28 9.010029 GTAATTCTAGGTCTTGGTTTCAATTCA 57.990 33.333 0.00 0.00 31.75 2.57
28 29 7.693969 ATTCTAGGTCTTGGTTTCAATTCAG 57.306 36.000 0.00 0.00 31.75 3.02
29 30 6.187727 TCTAGGTCTTGGTTTCAATTCAGT 57.812 37.500 0.00 0.00 31.75 3.41
30 31 7.311092 TCTAGGTCTTGGTTTCAATTCAGTA 57.689 36.000 0.00 0.00 31.75 2.74
31 32 7.386851 TCTAGGTCTTGGTTTCAATTCAGTAG 58.613 38.462 0.00 0.00 31.75 2.57
32 33 5.316987 AGGTCTTGGTTTCAATTCAGTAGG 58.683 41.667 0.00 0.00 31.75 3.18
33 34 5.073144 AGGTCTTGGTTTCAATTCAGTAGGA 59.927 40.000 0.00 0.00 31.75 2.94
34 35 5.946377 GGTCTTGGTTTCAATTCAGTAGGAT 59.054 40.000 0.00 0.00 31.75 3.24
35 36 7.037586 AGGTCTTGGTTTCAATTCAGTAGGATA 60.038 37.037 0.00 0.00 31.75 2.59
36 37 7.610305 GGTCTTGGTTTCAATTCAGTAGGATAA 59.390 37.037 0.00 0.00 31.75 1.75
37 38 9.178758 GTCTTGGTTTCAATTCAGTAGGATAAT 57.821 33.333 0.00 0.00 31.75 1.28
74 75 1.786441 AGAAGGATTGGTTGGGTTCCA 59.214 47.619 0.00 0.00 0.00 3.53
87 88 1.547675 GGGTTCCACCTTTCTGCATCA 60.548 52.381 0.00 0.00 38.64 3.07
98 99 4.921515 CCTTTCTGCATCATGTTCTTGTTG 59.078 41.667 0.00 0.00 0.00 3.33
102 103 3.151554 TGCATCATGTTCTTGTTGCTCT 58.848 40.909 16.66 0.00 41.03 4.09
103 104 3.057806 TGCATCATGTTCTTGTTGCTCTG 60.058 43.478 16.66 0.00 41.03 3.35
104 105 3.189910 GCATCATGTTCTTGTTGCTCTGA 59.810 43.478 11.71 0.00 38.62 3.27
111 112 7.391275 TCATGTTCTTGTTGCTCTGATTGATTA 59.609 33.333 0.00 0.00 0.00 1.75
115 116 7.369803 TCTTGTTGCTCTGATTGATTAGTTC 57.630 36.000 0.00 0.00 0.00 3.01
128 129 2.396590 TTAGTTCGTTCATGGAGGCC 57.603 50.000 0.00 0.00 0.00 5.19
137 138 3.620488 GTTCATGGAGGCCATAACTTCA 58.380 45.455 5.01 0.00 43.15 3.02
138 139 3.281727 TCATGGAGGCCATAACTTCAC 57.718 47.619 5.01 0.00 43.15 3.18
139 140 2.092429 TCATGGAGGCCATAACTTCACC 60.092 50.000 5.01 0.00 43.15 4.02
140 141 1.668826 TGGAGGCCATAACTTCACCT 58.331 50.000 5.01 0.00 0.00 4.00
145 168 3.081804 AGGCCATAACTTCACCTTTTCG 58.918 45.455 5.01 0.00 0.00 3.46
149 172 3.502211 CCATAACTTCACCTTTTCGCTGT 59.498 43.478 0.00 0.00 0.00 4.40
154 177 1.865865 TCACCTTTTCGCTGTCAGAC 58.134 50.000 3.32 0.00 0.00 3.51
161 184 3.953712 TTTCGCTGTCAGACCTGATAA 57.046 42.857 3.32 0.00 42.18 1.75
162 185 4.471904 TTTCGCTGTCAGACCTGATAAT 57.528 40.909 3.32 0.00 42.18 1.28
164 187 4.569761 TCGCTGTCAGACCTGATAATAC 57.430 45.455 3.32 0.00 42.18 1.89
168 191 5.605534 GCTGTCAGACCTGATAATACACAT 58.394 41.667 3.32 0.00 42.18 3.21
169 192 5.464722 GCTGTCAGACCTGATAATACACATG 59.535 44.000 3.32 0.00 42.18 3.21
170 193 5.917462 TGTCAGACCTGATAATACACATGG 58.083 41.667 2.78 0.00 42.18 3.66
171 194 5.660864 TGTCAGACCTGATAATACACATGGA 59.339 40.000 2.78 0.00 42.18 3.41
172 195 6.183360 TGTCAGACCTGATAATACACATGGAG 60.183 42.308 2.78 0.00 42.18 3.86
173 196 5.899547 TCAGACCTGATAATACACATGGAGT 59.100 40.000 0.00 0.00 34.14 3.85
174 197 6.384015 TCAGACCTGATAATACACATGGAGTT 59.616 38.462 0.00 0.00 34.14 3.01
175 198 6.703607 CAGACCTGATAATACACATGGAGTTC 59.296 42.308 0.00 0.00 0.00 3.01
176 199 5.930135 ACCTGATAATACACATGGAGTTCC 58.070 41.667 0.00 0.00 0.00 3.62
207 241 7.548780 GGATCTCTCTATGATTGGTGCTTTATC 59.451 40.741 0.00 0.00 0.00 1.75
214 248 6.630444 ATGATTGGTGCTTTATCAGATGTC 57.370 37.500 0.00 0.00 32.32 3.06
215 249 4.883585 TGATTGGTGCTTTATCAGATGTCC 59.116 41.667 0.00 0.00 0.00 4.02
286 327 1.510480 GGCAGCACTGTTGGACACTC 61.510 60.000 0.00 0.00 0.00 3.51
287 328 0.533755 GCAGCACTGTTGGACACTCT 60.534 55.000 0.00 0.00 0.00 3.24
288 329 1.506493 CAGCACTGTTGGACACTCTC 58.494 55.000 0.00 0.00 0.00 3.20
290 331 1.696336 AGCACTGTTGGACACTCTCAT 59.304 47.619 0.00 0.00 0.00 2.90
337 382 1.032014 TGGCCAAACAGTCTTTCAGC 58.968 50.000 0.61 0.00 0.00 4.26
373 714 4.584394 CTTCGTCAGTTGTTGGTGTAAAC 58.416 43.478 0.00 0.00 0.00 2.01
384 725 6.182507 TGTTGGTGTAAACTGAATAGGAGT 57.817 37.500 0.00 0.00 0.00 3.85
387 728 9.038072 TGTTGGTGTAAACTGAATAGGAGTATA 57.962 33.333 0.00 0.00 0.00 1.47
388 729 9.310716 GTTGGTGTAAACTGAATAGGAGTATAC 57.689 37.037 0.00 0.00 0.00 1.47
390 731 7.620491 TGGTGTAAACTGAATAGGAGTATACCA 59.380 37.037 0.00 0.00 32.58 3.25
395 736 8.451908 AAACTGAATAGGAGTATACCAAATGC 57.548 34.615 0.00 0.00 0.00 3.56
396 737 7.380423 ACTGAATAGGAGTATACCAAATGCT 57.620 36.000 0.00 0.00 0.00 3.79
397 738 7.220030 ACTGAATAGGAGTATACCAAATGCTG 58.780 38.462 0.00 0.00 0.00 4.41
402 746 3.254166 GGAGTATACCAAATGCTGCCATG 59.746 47.826 0.00 0.00 0.00 3.66
420 764 3.055963 CCATGAAAGCAAATTAGGTGCCA 60.056 43.478 0.00 0.00 43.27 4.92
454 802 1.037493 GAAACCTTTCCGTTTGGCCT 58.963 50.000 3.32 0.00 36.10 5.19
456 804 0.106419 AACCTTTCCGTTTGGCCTGA 60.106 50.000 3.32 0.00 34.14 3.86
485 836 1.002134 CGTCAGGGCCTCAACCAAT 60.002 57.895 0.95 0.00 0.00 3.16
486 837 1.026718 CGTCAGGGCCTCAACCAATC 61.027 60.000 0.95 0.00 0.00 2.67
488 839 1.139498 TCAGGGCCTCAACCAATCCA 61.139 55.000 0.95 0.00 0.00 3.41
489 840 0.251742 CAGGGCCTCAACCAATCCAA 60.252 55.000 0.95 0.00 0.00 3.53
490 841 0.486879 AGGGCCTCAACCAATCCAAA 59.513 50.000 0.00 0.00 0.00 3.28
507 950 3.054875 TCCAAATCTCTCACCATCACCAG 60.055 47.826 0.00 0.00 0.00 4.00
532 975 2.224523 ACAAACCGGCAGAAGATGAAGA 60.225 45.455 0.00 0.00 0.00 2.87
551 994 1.947456 GATGATTACTGCGGGGGTTTC 59.053 52.381 0.00 0.00 0.00 2.78
553 996 1.339631 TGATTACTGCGGGGGTTTCAG 60.340 52.381 0.00 0.00 0.00 3.02
568 1040 3.751175 GGTTTCAGCACTGCACAGTAATA 59.249 43.478 2.38 0.00 40.20 0.98
569 1041 4.215399 GGTTTCAGCACTGCACAGTAATAA 59.785 41.667 2.38 0.00 40.20 1.40
573 1045 5.111989 TCAGCACTGCACAGTAATAATCTC 58.888 41.667 2.38 0.00 40.20 2.75
574 1046 4.272018 CAGCACTGCACAGTAATAATCTCC 59.728 45.833 2.38 0.00 40.20 3.71
575 1047 4.163078 AGCACTGCACAGTAATAATCTCCT 59.837 41.667 2.38 0.00 40.20 3.69
576 1048 4.272018 GCACTGCACAGTAATAATCTCCTG 59.728 45.833 2.38 0.00 40.20 3.86
577 1049 4.272018 CACTGCACAGTAATAATCTCCTGC 59.728 45.833 2.38 0.00 40.20 4.85
578 1050 3.457234 TGCACAGTAATAATCTCCTGCG 58.543 45.455 0.00 0.00 0.00 5.18
591 1063 2.290641 TCTCCTGCGAGAAAACAAAAGC 59.709 45.455 0.00 0.00 42.33 3.51
597 1071 3.555139 TGCGAGAAAACAAAAGCAATTGG 59.445 39.130 7.72 0.00 34.56 3.16
600 1074 5.727249 CGAGAAAACAAAAGCAATTGGAAC 58.273 37.500 7.72 0.00 34.56 3.62
601 1075 5.519927 CGAGAAAACAAAAGCAATTGGAACT 59.480 36.000 7.72 0.00 34.56 3.01
602 1076 6.508404 CGAGAAAACAAAAGCAATTGGAACTG 60.508 38.462 7.72 0.00 34.56 3.16
603 1077 6.172630 AGAAAACAAAAGCAATTGGAACTGT 58.827 32.000 7.72 0.00 34.56 3.55
605 1079 6.902224 AAACAAAAGCAATTGGAACTGTAC 57.098 33.333 7.72 0.00 34.56 2.90
608 1082 6.042143 ACAAAAGCAATTGGAACTGTACAAG 58.958 36.000 7.72 0.00 34.56 3.16
616 1090 5.828299 TTGGAACTGTACAAGGAAAACTG 57.172 39.130 0.00 0.00 0.00 3.16
617 1091 5.105567 TGGAACTGTACAAGGAAAACTGA 57.894 39.130 0.00 0.00 0.00 3.41
620 1094 5.355910 GGAACTGTACAAGGAAAACTGAACA 59.644 40.000 0.00 0.00 0.00 3.18
625 1099 7.719633 ACTGTACAAGGAAAACTGAACATACAT 59.280 33.333 0.00 0.00 0.00 2.29
626 1100 7.870826 TGTACAAGGAAAACTGAACATACATG 58.129 34.615 0.00 0.00 0.00 3.21
627 1101 5.772521 ACAAGGAAAACTGAACATACATGC 58.227 37.500 0.00 0.00 0.00 4.06
629 1103 6.015180 ACAAGGAAAACTGAACATACATGCAT 60.015 34.615 0.00 0.00 0.00 3.96
630 1104 5.957798 AGGAAAACTGAACATACATGCATG 58.042 37.500 25.09 25.09 0.00 4.06
632 1106 6.658816 AGGAAAACTGAACATACATGCATGTA 59.341 34.615 35.03 35.03 46.21 2.29
633 1107 6.747280 GGAAAACTGAACATACATGCATGTAC 59.253 38.462 35.53 24.55 45.11 2.90
634 1108 7.362056 GGAAAACTGAACATACATGCATGTACT 60.362 37.037 35.53 24.38 45.11 2.73
636 1110 5.118990 ACTGAACATACATGCATGTACTCC 58.881 41.667 35.53 24.76 45.11 3.85
637 1111 5.104776 ACTGAACATACATGCATGTACTCCT 60.105 40.000 35.53 22.20 45.11 3.69
638 1112 5.744171 TGAACATACATGCATGTACTCCTT 58.256 37.500 35.53 23.99 45.11 3.36
640 1114 4.454678 ACATACATGCATGTACTCCTTGG 58.545 43.478 35.53 21.65 45.11 3.61
642 1116 2.715046 ACATGCATGTACTCCTTGGTG 58.285 47.619 30.50 1.65 39.68 4.17
643 1117 2.040278 ACATGCATGTACTCCTTGGTGT 59.960 45.455 30.50 2.37 39.68 4.16
646 1120 4.359434 TGCATGTACTCCTTGGTGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
647 1121 4.917385 TGCATGTACTCCTTGGTGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
648 1122 5.321102 TGCATGTACTCCTTGGTGTTAATT 58.679 37.500 0.00 0.00 0.00 1.40
650 1124 6.092748 GCATGTACTCCTTGGTGTTAATTTG 58.907 40.000 0.00 0.00 0.00 2.32
651 1125 6.620678 CATGTACTCCTTGGTGTTAATTTGG 58.379 40.000 0.00 0.00 0.00 3.28
653 1127 4.463050 ACTCCTTGGTGTTAATTTGGGA 57.537 40.909 0.00 0.00 0.00 4.37
654 1128 4.407365 ACTCCTTGGTGTTAATTTGGGAG 58.593 43.478 0.00 0.00 43.12 4.30
655 1129 3.763897 CTCCTTGGTGTTAATTTGGGAGG 59.236 47.826 0.00 0.00 36.44 4.30
656 1130 2.233676 CCTTGGTGTTAATTTGGGAGGC 59.766 50.000 0.00 0.00 0.00 4.70
658 1132 1.191535 GGTGTTAATTTGGGAGGCCC 58.808 55.000 0.00 0.00 45.71 5.80
691 1183 3.209318 CCATTTGGCATGGACGGG 58.791 61.111 0.60 0.00 41.64 5.28
692 1184 2.495866 CATTTGGCATGGACGGGC 59.504 61.111 0.00 0.00 0.00 6.13
693 1185 2.053865 CATTTGGCATGGACGGGCT 61.054 57.895 0.00 0.00 0.00 5.19
694 1186 1.305213 ATTTGGCATGGACGGGCTT 60.305 52.632 0.00 0.00 0.00 4.35
695 1187 0.033601 ATTTGGCATGGACGGGCTTA 60.034 50.000 0.00 0.00 0.00 3.09
696 1188 0.963355 TTTGGCATGGACGGGCTTAC 60.963 55.000 0.00 0.00 0.00 2.34
707 1199 2.688958 GACGGGCTTACTACTCATCACT 59.311 50.000 0.00 0.00 0.00 3.41
711 1203 3.489398 GGGCTTACTACTCATCACTCGTG 60.489 52.174 0.00 0.00 0.00 4.35
714 1206 2.217510 ACTACTCATCACTCGTGGGT 57.782 50.000 0.00 0.00 0.00 4.51
715 1207 1.819288 ACTACTCATCACTCGTGGGTG 59.181 52.381 0.00 0.00 38.44 4.61
717 1209 1.219124 CTCATCACTCGTGGGTGGG 59.781 63.158 0.00 0.00 37.75 4.61
718 1210 1.229051 TCATCACTCGTGGGTGGGA 60.229 57.895 0.00 0.00 37.75 4.37
733 1226 1.668151 GGGAGCGTTTTCAGAGCGT 60.668 57.895 0.00 0.00 35.78 5.07
734 1227 1.493311 GGAGCGTTTTCAGAGCGTG 59.507 57.895 0.00 0.00 35.78 5.34
737 1230 1.439365 GCGTTTTCAGAGCGTGCAG 60.439 57.895 0.00 0.00 0.00 4.41
758 1266 4.373116 TGACGCGTCAAGGCCTCC 62.373 66.667 37.68 10.77 36.53 4.30
782 1293 5.939883 CACCAAATCTCTCACTATCACCAAA 59.060 40.000 0.00 0.00 0.00 3.28
783 1294 5.940470 ACCAAATCTCTCACTATCACCAAAC 59.060 40.000 0.00 0.00 0.00 2.93
785 1296 5.661056 AATCTCTCACTATCACCAAACGA 57.339 39.130 0.00 0.00 0.00 3.85
786 1297 5.661056 ATCTCTCACTATCACCAAACGAA 57.339 39.130 0.00 0.00 0.00 3.85
790 1301 6.202188 TCTCTCACTATCACCAAACGAAAAAC 59.798 38.462 0.00 0.00 0.00 2.43
827 1378 4.115279 CCGACATGGCAGTAGCAG 57.885 61.111 0.00 0.00 44.61 4.24
828 1379 1.522355 CCGACATGGCAGTAGCAGG 60.522 63.158 0.00 0.00 44.61 4.85
831 1382 1.341209 CGACATGGCAGTAGCAGGATA 59.659 52.381 0.00 0.00 44.61 2.59
840 1391 6.364701 TGGCAGTAGCAGGATAAATTTGTAT 58.635 36.000 0.00 0.00 44.61 2.29
842 1393 7.661437 TGGCAGTAGCAGGATAAATTTGTATAG 59.339 37.037 0.00 0.00 44.61 1.31
850 1401 7.384115 GCAGGATAAATTTGTATAGTCTACGCA 59.616 37.037 0.00 0.00 0.00 5.24
853 1404 9.037737 GGATAAATTTGTATAGTCTACGCACAA 57.962 33.333 0.00 1.30 0.00 3.33
865 1416 7.295952 AGTCTACGCACAAGAATAAATTCAG 57.704 36.000 5.55 0.60 39.23 3.02
885 1436 1.993370 GAAAGTAGCACCACGTAGCAG 59.007 52.381 9.11 0.00 0.00 4.24
886 1437 0.389948 AAGTAGCACCACGTAGCAGC 60.390 55.000 9.11 0.75 0.00 5.25
887 1438 1.080093 GTAGCACCACGTAGCAGCA 60.080 57.895 9.11 0.00 0.00 4.41
888 1439 1.078759 GTAGCACCACGTAGCAGCAG 61.079 60.000 9.11 0.00 0.00 4.24
889 1440 1.532604 TAGCACCACGTAGCAGCAGT 61.533 55.000 9.11 0.00 0.00 4.40
890 1441 1.961277 GCACCACGTAGCAGCAGTT 60.961 57.895 0.00 0.00 0.00 3.16
891 1442 1.507141 GCACCACGTAGCAGCAGTTT 61.507 55.000 0.00 0.00 0.00 2.66
892 1443 0.512952 CACCACGTAGCAGCAGTTTC 59.487 55.000 0.00 0.00 0.00 2.78
893 1444 0.393077 ACCACGTAGCAGCAGTTTCT 59.607 50.000 0.00 0.00 0.00 2.52
894 1445 1.616865 ACCACGTAGCAGCAGTTTCTA 59.383 47.619 0.00 0.00 0.00 2.10
910 1461 4.767928 AGTTTCTATCTATCTACCCGGCAG 59.232 45.833 0.00 0.00 0.00 4.85
916 1467 1.679680 CTATCTACCCGGCAGTTCGAA 59.320 52.381 0.00 0.00 0.00 3.71
928 1479 5.220854 CCGGCAGTTCGAAATTCAGATTATT 60.221 40.000 0.00 0.00 0.00 1.40
945 1496 7.558807 TCAGATTATTCCAAGCACAGATTGATT 59.441 33.333 0.00 0.00 32.63 2.57
964 1515 9.664332 GATTGATTTGTGCCTACTGATAGATAT 57.336 33.333 0.00 0.00 0.00 1.63
1011 1569 5.134202 AGAAATGAAAAACATTCCGGTCC 57.866 39.130 0.00 0.00 46.90 4.46
1040 1602 5.575606 CAGCGGTCGACTAGAAAATAAAAGA 59.424 40.000 16.46 0.00 0.00 2.52
1058 1620 5.876612 AAAGATGCAGAGAAAGATGTGTC 57.123 39.130 0.00 0.00 0.00 3.67
1083 1652 1.809133 TCTTTCCAGTGGTGGTGGTA 58.191 50.000 9.54 0.00 45.28 3.25
1102 1677 1.616871 AGTAGGGCTGTAGGGTAGGA 58.383 55.000 0.00 0.00 0.00 2.94
1103 1678 2.153841 AGTAGGGCTGTAGGGTAGGAT 58.846 52.381 0.00 0.00 0.00 3.24
1104 1679 2.110365 AGTAGGGCTGTAGGGTAGGATC 59.890 54.545 0.00 0.00 0.00 3.36
1105 1680 0.941963 AGGGCTGTAGGGTAGGATCA 59.058 55.000 0.00 0.00 0.00 2.92
1130 1705 4.816925 TCGACTCGACTGAGATAATCATGT 59.183 41.667 0.00 0.00 45.57 3.21
1131 1706 5.297029 TCGACTCGACTGAGATAATCATGTT 59.703 40.000 0.00 0.00 45.57 2.71
1132 1707 6.482308 TCGACTCGACTGAGATAATCATGTTA 59.518 38.462 0.00 0.00 45.57 2.41
1133 1708 7.173390 TCGACTCGACTGAGATAATCATGTTAT 59.827 37.037 0.00 0.00 45.57 1.89
1210 1800 1.134431 TGGTCCATCCACGACATGATG 60.134 52.381 0.00 0.00 41.93 3.07
1223 1814 6.367695 CCACGACATGATGACAAAAGTTAGTA 59.632 38.462 0.00 0.00 0.00 1.82
1250 1849 2.490165 CAGCATGCTTAGCTTGGCT 58.510 52.632 19.98 15.00 41.14 4.75
1251 1850 0.815734 CAGCATGCTTAGCTTGGCTT 59.184 50.000 19.98 0.00 41.14 4.35
1252 1851 1.203994 CAGCATGCTTAGCTTGGCTTT 59.796 47.619 19.98 0.00 41.14 3.51
1386 1996 0.474184 ACCACTCCACTCCACAAAGG 59.526 55.000 0.00 0.00 39.47 3.11
1410 2020 1.305930 CCGCTAAAGCACCCAAGGAC 61.306 60.000 2.44 0.00 42.21 3.85
1465 2081 1.257743 CCACCGAGAGAAGAGAACCA 58.742 55.000 0.00 0.00 0.00 3.67
1543 2196 1.400759 GGCTCGAGCTTTTCTTGCTTG 60.401 52.381 34.46 0.00 41.30 4.01
1544 2197 1.961079 CTCGAGCTTTTCTTGCTTGC 58.039 50.000 0.00 0.00 41.30 4.01
1545 2198 1.534595 CTCGAGCTTTTCTTGCTTGCT 59.465 47.619 0.00 0.00 41.30 3.91
1546 2199 1.949525 TCGAGCTTTTCTTGCTTGCTT 59.050 42.857 0.00 0.00 41.30 3.91
2107 2784 2.671070 CCCTGGCCTTGTGATCGT 59.329 61.111 3.32 0.00 0.00 3.73
2108 2785 1.002134 CCCTGGCCTTGTGATCGTT 60.002 57.895 3.32 0.00 0.00 3.85
2143 2826 1.673993 CCATGCCAAGGTACACGCA 60.674 57.895 0.00 0.00 35.35 5.24
2199 2900 3.302375 CTCGATCCATGGAGCCAAG 57.698 57.895 23.90 17.06 0.00 3.61
2302 3019 5.901884 CGTTGATTCCGTGTTGATAATAAGC 59.098 40.000 0.00 0.00 0.00 3.09
2313 3030 6.826741 GTGTTGATAATAAGCAAGGTTAGGGA 59.173 38.462 0.00 0.00 30.14 4.20
2315 3032 7.556275 TGTTGATAATAAGCAAGGTTAGGGAAG 59.444 37.037 0.00 0.00 30.14 3.46
2316 3033 6.062095 TGATAATAAGCAAGGTTAGGGAAGC 58.938 40.000 0.00 0.00 0.00 3.86
2321 3038 1.177401 CAAGGTTAGGGAAGCAAGCC 58.823 55.000 0.00 0.00 35.41 4.35
2325 3050 1.017387 GTTAGGGAAGCAAGCCGATG 58.983 55.000 0.00 0.00 0.00 3.84
2382 3112 2.413239 CGTGCTGTTCATGTTCATGTCC 60.413 50.000 11.73 5.46 0.00 4.02
2384 3114 3.254166 GTGCTGTTCATGTTCATGTCCTT 59.746 43.478 11.73 0.00 0.00 3.36
2389 3119 5.563592 TGTTCATGTTCATGTCCTTCATCT 58.436 37.500 11.73 0.00 34.09 2.90
2473 3214 5.372373 GTCAATCATAGGAAGGAAGGAAGG 58.628 45.833 0.00 0.00 0.00 3.46
2474 3215 5.131142 GTCAATCATAGGAAGGAAGGAAGGA 59.869 44.000 0.00 0.00 0.00 3.36
2477 3218 4.040755 TCATAGGAAGGAAGGAAGGAAGG 58.959 47.826 0.00 0.00 0.00 3.46
2479 3220 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
2481 3222 3.727391 AGGAAGGAAGGAAGGAAGGAAAA 59.273 43.478 0.00 0.00 0.00 2.29
2482 3223 4.170053 AGGAAGGAAGGAAGGAAGGAAAAA 59.830 41.667 0.00 0.00 0.00 1.94
2483 3224 4.524714 GGAAGGAAGGAAGGAAGGAAAAAG 59.475 45.833 0.00 0.00 0.00 2.27
2484 3225 5.386060 GAAGGAAGGAAGGAAGGAAAAAGA 58.614 41.667 0.00 0.00 0.00 2.52
2487 3228 4.464244 GGAAGGAAGGAAGGAAAAAGATGG 59.536 45.833 0.00 0.00 0.00 3.51
2587 3334 6.944290 TCCATGTTTCATGTCTCATCTTCTTT 59.056 34.615 8.57 0.00 0.00 2.52
2589 3336 7.094506 CCATGTTTCATGTCTCATCTTCTTTGA 60.095 37.037 8.57 0.00 0.00 2.69
2590 3337 7.991084 TGTTTCATGTCTCATCTTCTTTGAT 57.009 32.000 0.00 0.00 0.00 2.57
2591 3338 8.037382 TGTTTCATGTCTCATCTTCTTTGATC 57.963 34.615 0.00 0.00 0.00 2.92
2592 3339 6.898912 TTCATGTCTCATCTTCTTTGATCG 57.101 37.500 0.00 0.00 0.00 3.69
2593 3340 6.212888 TCATGTCTCATCTTCTTTGATCGA 57.787 37.500 0.00 0.00 0.00 3.59
2594 3341 6.038985 TCATGTCTCATCTTCTTTGATCGAC 58.961 40.000 0.00 0.00 0.00 4.20
2595 3342 5.391312 TGTCTCATCTTCTTTGATCGACA 57.609 39.130 0.00 0.00 34.45 4.35
2596 3343 5.970592 TGTCTCATCTTCTTTGATCGACAT 58.029 37.500 0.00 0.00 33.17 3.06
2597 3344 5.809051 TGTCTCATCTTCTTTGATCGACATG 59.191 40.000 0.00 0.00 33.17 3.21
2598 3345 5.233902 GTCTCATCTTCTTTGATCGACATGG 59.766 44.000 0.00 0.00 30.61 3.66
2599 3346 5.089970 TCATCTTCTTTGATCGACATGGT 57.910 39.130 0.00 0.00 0.00 3.55
2600 3347 6.096846 TCTCATCTTCTTTGATCGACATGGTA 59.903 38.462 0.00 0.00 0.00 3.25
2601 3348 6.820335 TCATCTTCTTTGATCGACATGGTAT 58.180 36.000 0.00 0.00 0.00 2.73
2602 3349 6.703165 TCATCTTCTTTGATCGACATGGTATG 59.297 38.462 0.00 0.00 0.00 2.39
2604 3351 6.406370 TCTTCTTTGATCGACATGGTATGTT 58.594 36.000 0.00 0.00 45.03 2.71
2605 3352 6.878923 TCTTCTTTGATCGACATGGTATGTTT 59.121 34.615 0.00 0.00 45.03 2.83
2606 3353 6.662414 TCTTTGATCGACATGGTATGTTTC 57.338 37.500 0.00 0.00 45.03 2.78
2608 3355 6.535150 TCTTTGATCGACATGGTATGTTTCTC 59.465 38.462 0.00 0.00 45.03 2.87
2625 3372 1.001974 TCTCCCATGAACACCAACTCG 59.998 52.381 0.00 0.00 0.00 4.18
2626 3373 1.001974 CTCCCATGAACACCAACTCGA 59.998 52.381 0.00 0.00 0.00 4.04
2627 3374 1.628340 TCCCATGAACACCAACTCGAT 59.372 47.619 0.00 0.00 0.00 3.59
2628 3375 2.009774 CCCATGAACACCAACTCGATC 58.990 52.381 0.00 0.00 0.00 3.69
2640 3387 0.816825 ACTCGATCATGCACCATGGC 60.817 55.000 13.04 0.00 41.66 4.40
2641 3388 1.512996 CTCGATCATGCACCATGGCC 61.513 60.000 13.04 3.53 41.66 5.36
2643 3390 1.456145 GATCATGCACCATGGCCCA 60.456 57.895 13.04 9.71 41.66 5.36
2644 3391 0.830444 GATCATGCACCATGGCCCAT 60.830 55.000 13.04 11.79 41.66 4.00
2645 3392 1.118965 ATCATGCACCATGGCCCATG 61.119 55.000 27.30 27.30 41.66 3.66
2646 3393 3.158648 ATGCACCATGGCCCATGC 61.159 61.111 18.67 14.95 40.20 4.06
2647 3394 4.698625 TGCACCATGGCCCATGCA 62.699 61.111 20.54 20.54 45.45 3.96
2648 3395 3.158648 GCACCATGGCCCATGCAT 61.159 61.111 18.67 5.54 40.20 3.96
2649 3396 2.818841 CACCATGGCCCATGCATG 59.181 61.111 18.67 20.19 40.20 4.06
2650 3397 3.158648 ACCATGGCCCATGCATGC 61.159 61.111 21.69 11.82 40.20 4.06
2655 3402 4.845447 GGCCCATGCATGCCTCCA 62.845 66.667 21.69 0.00 44.46 3.86
2656 3403 2.523412 GCCCATGCATGCCTCCAT 60.523 61.111 21.69 0.00 37.47 3.41
2663 3410 3.521605 CATGCCTCCATGGTGCTG 58.478 61.111 23.20 16.64 44.07 4.41
2664 3411 1.077285 CATGCCTCCATGGTGCTGA 60.077 57.895 23.20 9.92 44.07 4.26
2665 3412 0.467474 CATGCCTCCATGGTGCTGAT 60.467 55.000 23.20 11.40 44.07 2.90
2698 3452 4.515191 GCTTTTGCTATCCCGATCAATGTA 59.485 41.667 0.00 0.00 43.35 2.29
2727 3481 5.721232 CCTAACTAACCTCTGTGTTAGGTG 58.279 45.833 17.66 8.91 46.85 4.00
2728 3482 5.245526 CCTAACTAACCTCTGTGTTAGGTGT 59.754 44.000 17.66 8.29 46.85 4.16
2807 3602 2.216898 CCATCCGATCTTTCTTCAGCC 58.783 52.381 0.00 0.00 0.00 4.85
2815 3610 2.653726 TCTTTCTTCAGCCAAAGTGCA 58.346 42.857 0.00 0.00 32.37 4.57
2816 3611 2.358898 TCTTTCTTCAGCCAAAGTGCAC 59.641 45.455 9.40 9.40 32.37 4.57
2820 3615 1.808945 CTTCAGCCAAAGTGCACTAGG 59.191 52.381 26.12 26.12 0.00 3.02
2872 3675 2.093625 CGAGATCGATCGATGGAGAGAC 59.906 54.545 33.86 17.57 45.56 3.36
2888 3691 3.118531 AGAGACCAAACTAGGCCATCAT 58.881 45.455 5.01 0.00 0.00 2.45
2889 3692 3.135530 AGAGACCAAACTAGGCCATCATC 59.864 47.826 5.01 0.00 0.00 2.92
2890 3693 2.846206 AGACCAAACTAGGCCATCATCA 59.154 45.455 5.01 0.00 0.00 3.07
2932 3736 1.268113 GCGGTGCGAAAATGTGTGTG 61.268 55.000 0.00 0.00 0.00 3.82
2933 3737 0.028770 CGGTGCGAAAATGTGTGTGT 59.971 50.000 0.00 0.00 0.00 3.72
2934 3738 1.476074 GGTGCGAAAATGTGTGTGTG 58.524 50.000 0.00 0.00 0.00 3.82
2935 3739 0.845768 GTGCGAAAATGTGTGTGTGC 59.154 50.000 0.00 0.00 0.00 4.57
2936 3740 0.590984 TGCGAAAATGTGTGTGTGCG 60.591 50.000 0.00 0.00 0.00 5.34
2937 3741 1.865149 GCGAAAATGTGTGTGTGCGC 61.865 55.000 0.00 0.00 36.35 6.09
2938 3742 1.587457 CGAAAATGTGTGTGTGCGCG 61.587 55.000 0.00 0.00 0.00 6.86
2939 3743 1.865149 GAAAATGTGTGTGTGCGCGC 61.865 55.000 27.26 27.26 36.27 6.86
2940 3744 4.664864 AATGTGTGTGTGCGCGCG 62.665 61.111 28.44 28.44 38.36 6.86
3008 3839 0.818852 TCGCGGTCGATGGGTATGTA 60.819 55.000 6.13 0.00 40.21 2.29
3009 3840 0.662374 CGCGGTCGATGGGTATGTAC 60.662 60.000 0.00 0.00 38.10 2.90
3010 3841 0.386476 GCGGTCGATGGGTATGTACA 59.614 55.000 0.00 0.00 0.00 2.90
3012 3843 2.547218 GCGGTCGATGGGTATGTACATT 60.547 50.000 14.77 0.00 0.00 2.71
3013 3844 3.057019 CGGTCGATGGGTATGTACATTG 58.943 50.000 14.77 0.00 0.00 2.82
3088 3919 1.716378 GTGCAAACGTACGTGCGTG 60.716 57.895 31.52 20.73 45.00 5.34
3096 3927 4.673298 TACGTGCGTGGGCTGGTG 62.673 66.667 7.55 0.00 40.82 4.17
3099 3930 4.722700 GTGCGTGGGCTGGTGGAT 62.723 66.667 0.00 0.00 40.82 3.41
3100 3931 4.408821 TGCGTGGGCTGGTGGATC 62.409 66.667 0.00 0.00 40.82 3.36
3102 3933 3.770040 CGTGGGCTGGTGGATCGA 61.770 66.667 0.00 0.00 0.00 3.59
3103 3934 2.911143 GTGGGCTGGTGGATCGAT 59.089 61.111 0.00 0.00 0.00 3.59
3104 3935 1.227674 GTGGGCTGGTGGATCGATC 60.228 63.158 17.36 17.36 0.00 3.69
3105 3936 2.029666 GGGCTGGTGGATCGATCG 59.970 66.667 18.81 9.36 0.00 3.69
3106 3937 2.029666 GGCTGGTGGATCGATCGG 59.970 66.667 18.81 2.87 0.00 4.18
3107 3938 2.029666 GCTGGTGGATCGATCGGG 59.970 66.667 18.81 8.04 0.00 5.14
3108 3939 2.737180 CTGGTGGATCGATCGGGG 59.263 66.667 18.81 4.08 0.00 5.73
3109 3940 2.042333 TGGTGGATCGATCGGGGT 60.042 61.111 18.81 1.44 0.00 4.95
3110 3941 2.088674 CTGGTGGATCGATCGGGGTC 62.089 65.000 18.81 10.96 0.00 4.46
3114 3945 2.643844 GATCGATCGGGGTCGGAC 59.356 66.667 16.41 0.00 41.74 4.79
3117 3948 4.247612 CGATCGGGGTCGGACGAC 62.248 72.222 15.90 15.90 42.39 4.34
3132 3963 0.871592 ACGACCACGCATCATCATCG 60.872 55.000 0.00 0.00 43.96 3.84
3134 3965 1.599419 CGACCACGCATCATCATCGTA 60.599 52.381 0.00 0.00 34.81 3.43
3146 3977 2.212869 TCATCGTATACGCACCCAAC 57.787 50.000 20.42 0.00 39.60 3.77
3149 3980 1.806351 CGTATACGCACCCAACGCA 60.806 57.895 13.08 0.00 0.00 5.24
3150 3981 1.352882 CGTATACGCACCCAACGCAA 61.353 55.000 13.08 0.00 0.00 4.85
3151 3982 0.797542 GTATACGCACCCAACGCAAA 59.202 50.000 0.00 0.00 0.00 3.68
3152 3983 1.399089 GTATACGCACCCAACGCAAAT 59.601 47.619 0.00 0.00 0.00 2.32
3236 4075 0.322975 ACGGAAGCTTGCATGACTCT 59.677 50.000 18.65 0.00 0.00 3.24
3285 4124 1.512734 GCACACTTGCGCACATAGC 60.513 57.895 11.12 7.51 39.50 2.97
3286 4125 1.868306 CACACTTGCGCACATAGCA 59.132 52.632 11.12 0.00 46.13 3.49
3288 4127 0.603707 ACACTTGCGCACATAGCAGT 60.604 50.000 11.12 7.04 46.01 4.40
3289 4128 0.179207 CACTTGCGCACATAGCAGTG 60.179 55.000 19.75 19.75 46.01 3.66
3290 4129 0.320683 ACTTGCGCACATAGCAGTGA 60.321 50.000 11.12 0.00 46.01 3.41
3291 4130 1.012086 CTTGCGCACATAGCAGTGAT 58.988 50.000 11.12 0.00 46.01 3.06
3292 4131 0.728542 TTGCGCACATAGCAGTGATG 59.271 50.000 11.12 0.00 46.01 3.07
3308 4147 6.473455 AGCAGTGATGTTTTCTTTTCTTTTCG 59.527 34.615 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.934023 AATTGAAACCAAGACCTAGAATTACA 57.066 30.769 0.00 0.00 0.00 2.41
1 2 9.010029 TGAATTGAAACCAAGACCTAGAATTAC 57.990 33.333 0.00 0.00 0.00 1.89
2 3 9.231297 CTGAATTGAAACCAAGACCTAGAATTA 57.769 33.333 0.00 0.00 0.00 1.40
3 4 7.725844 ACTGAATTGAAACCAAGACCTAGAATT 59.274 33.333 0.00 0.00 0.00 2.17
4 5 7.234355 ACTGAATTGAAACCAAGACCTAGAAT 58.766 34.615 0.00 0.00 0.00 2.40
5 6 6.601332 ACTGAATTGAAACCAAGACCTAGAA 58.399 36.000 0.00 0.00 0.00 2.10
6 7 6.187727 ACTGAATTGAAACCAAGACCTAGA 57.812 37.500 0.00 0.00 0.00 2.43
7 8 6.595716 CCTACTGAATTGAAACCAAGACCTAG 59.404 42.308 0.00 0.00 0.00 3.02
8 9 6.271391 TCCTACTGAATTGAAACCAAGACCTA 59.729 38.462 0.00 0.00 0.00 3.08
9 10 5.073144 TCCTACTGAATTGAAACCAAGACCT 59.927 40.000 0.00 0.00 0.00 3.85
10 11 5.313712 TCCTACTGAATTGAAACCAAGACC 58.686 41.667 0.00 0.00 0.00 3.85
11 12 8.561738 TTATCCTACTGAATTGAAACCAAGAC 57.438 34.615 0.00 0.00 0.00 3.01
25 26 9.692749 GATTGTTCGTTCATATTATCCTACTGA 57.307 33.333 0.00 0.00 0.00 3.41
26 27 9.698309 AGATTGTTCGTTCATATTATCCTACTG 57.302 33.333 0.00 0.00 0.00 2.74
35 36 9.838339 ATCCTTCTTAGATTGTTCGTTCATATT 57.162 29.630 0.00 0.00 0.00 1.28
36 37 9.838339 AATCCTTCTTAGATTGTTCGTTCATAT 57.162 29.630 0.00 0.00 32.74 1.78
37 38 9.098355 CAATCCTTCTTAGATTGTTCGTTCATA 57.902 33.333 5.52 0.00 43.62 2.15
38 39 7.066284 CCAATCCTTCTTAGATTGTTCGTTCAT 59.934 37.037 11.38 0.00 45.99 2.57
39 40 6.371548 CCAATCCTTCTTAGATTGTTCGTTCA 59.628 38.462 11.38 0.00 45.99 3.18
40 41 6.371825 ACCAATCCTTCTTAGATTGTTCGTTC 59.628 38.462 11.38 0.00 45.99 3.95
41 42 6.238648 ACCAATCCTTCTTAGATTGTTCGTT 58.761 36.000 11.38 0.00 45.99 3.85
42 43 5.805728 ACCAATCCTTCTTAGATTGTTCGT 58.194 37.500 11.38 1.80 45.99 3.85
43 44 6.403636 CCAACCAATCCTTCTTAGATTGTTCG 60.404 42.308 11.38 1.29 45.99 3.95
44 45 6.127619 CCCAACCAATCCTTCTTAGATTGTTC 60.128 42.308 11.38 0.00 45.99 3.18
45 46 5.716703 CCCAACCAATCCTTCTTAGATTGTT 59.283 40.000 11.38 4.83 45.99 2.83
46 47 5.222337 ACCCAACCAATCCTTCTTAGATTGT 60.222 40.000 11.38 0.00 45.99 2.71
74 75 4.147321 ACAAGAACATGATGCAGAAAGGT 58.853 39.130 0.00 0.00 0.00 3.50
87 88 6.585695 AATCAATCAGAGCAACAAGAACAT 57.414 33.333 0.00 0.00 0.00 2.71
98 99 6.417327 CATGAACGAACTAATCAATCAGAGC 58.583 40.000 0.00 0.00 0.00 4.09
102 103 5.817296 CCTCCATGAACGAACTAATCAATCA 59.183 40.000 0.00 0.00 0.00 2.57
103 104 5.277538 GCCTCCATGAACGAACTAATCAATC 60.278 44.000 0.00 0.00 0.00 2.67
104 105 4.576463 GCCTCCATGAACGAACTAATCAAT 59.424 41.667 0.00 0.00 0.00 2.57
111 112 0.620556 ATGGCCTCCATGAACGAACT 59.379 50.000 3.32 0.00 43.39 3.01
115 116 2.332063 AGTTATGGCCTCCATGAACG 57.668 50.000 3.32 0.00 44.84 3.95
137 138 0.759346 AGGTCTGACAGCGAAAAGGT 59.241 50.000 10.38 0.00 0.00 3.50
138 139 1.151668 CAGGTCTGACAGCGAAAAGG 58.848 55.000 10.38 0.00 0.00 3.11
139 140 2.154854 TCAGGTCTGACAGCGAAAAG 57.845 50.000 10.38 0.00 34.14 2.27
140 141 2.839486 ATCAGGTCTGACAGCGAAAA 57.161 45.000 10.38 0.00 43.11 2.29
145 168 5.011090 TGTGTATTATCAGGTCTGACAGC 57.989 43.478 10.38 0.00 43.11 4.40
149 172 5.899547 ACTCCATGTGTATTATCAGGTCTGA 59.100 40.000 2.93 2.93 44.59 3.27
154 177 5.928976 TGGAACTCCATGTGTATTATCAGG 58.071 41.667 0.00 0.00 42.01 3.86
175 198 5.046735 ACCAATCATAGAGAGATCCGAATGG 60.047 44.000 0.00 0.00 0.00 3.16
176 199 5.868258 CACCAATCATAGAGAGATCCGAATG 59.132 44.000 0.00 0.00 0.00 2.67
178 201 4.262207 GCACCAATCATAGAGAGATCCGAA 60.262 45.833 0.00 0.00 0.00 4.30
180 203 3.257873 AGCACCAATCATAGAGAGATCCG 59.742 47.826 0.00 0.00 0.00 4.18
181 204 4.888326 AGCACCAATCATAGAGAGATCC 57.112 45.455 0.00 0.00 0.00 3.36
182 205 8.093307 TGATAAAGCACCAATCATAGAGAGATC 58.907 37.037 0.00 0.00 0.00 2.75
184 207 7.288621 TCTGATAAAGCACCAATCATAGAGAGA 59.711 37.037 0.00 0.00 0.00 3.10
185 208 7.440198 TCTGATAAAGCACCAATCATAGAGAG 58.560 38.462 0.00 0.00 0.00 3.20
187 210 7.660617 ACATCTGATAAAGCACCAATCATAGAG 59.339 37.037 0.00 0.00 0.00 2.43
188 211 7.512130 ACATCTGATAAAGCACCAATCATAGA 58.488 34.615 0.00 0.00 0.00 1.98
189 212 7.094890 GGACATCTGATAAAGCACCAATCATAG 60.095 40.741 0.00 0.00 0.00 2.23
207 241 2.158798 AGACCATGCATCTGGACATCTG 60.159 50.000 13.35 0.00 39.73 2.90
215 249 2.118313 TGTTCCAGACCATGCATCTG 57.882 50.000 15.09 15.09 42.79 2.90
247 281 8.840321 TGCTGCCAAGAGTTAATAATATTCTTC 58.160 33.333 0.00 0.00 0.00 2.87
248 282 8.624776 GTGCTGCCAAGAGTTAATAATATTCTT 58.375 33.333 0.00 0.00 0.00 2.52
286 327 5.976534 GTCTGACAGCACTACAAGATATGAG 59.023 44.000 2.24 0.00 0.00 2.90
287 328 5.418840 TGTCTGACAGCACTACAAGATATGA 59.581 40.000 6.36 0.00 0.00 2.15
288 329 5.654497 TGTCTGACAGCACTACAAGATATG 58.346 41.667 6.36 0.00 0.00 1.78
290 331 5.394553 CCATGTCTGACAGCACTACAAGATA 60.395 44.000 16.46 0.00 0.00 1.98
373 714 6.148480 GCAGCATTTGGTATACTCCTATTCAG 59.852 42.308 2.25 0.00 0.00 3.02
384 725 4.202141 GCTTTCATGGCAGCATTTGGTATA 60.202 41.667 11.06 0.00 35.95 1.47
387 728 1.338389 GCTTTCATGGCAGCATTTGGT 60.338 47.619 11.06 0.00 35.95 3.67
388 729 1.338294 TGCTTTCATGGCAGCATTTGG 60.338 47.619 13.84 0.00 41.20 3.28
390 731 2.843401 TTGCTTTCATGGCAGCATTT 57.157 40.000 17.31 0.00 45.41 2.32
393 734 2.843401 AATTTGCTTTCATGGCAGCA 57.157 40.000 13.84 13.84 44.43 4.41
394 735 3.192466 CCTAATTTGCTTTCATGGCAGC 58.808 45.455 9.45 9.45 40.90 5.25
395 736 4.178540 CACCTAATTTGCTTTCATGGCAG 58.821 43.478 0.00 0.00 40.90 4.85
396 737 3.617045 GCACCTAATTTGCTTTCATGGCA 60.617 43.478 0.00 0.00 37.00 4.92
397 738 2.931969 GCACCTAATTTGCTTTCATGGC 59.068 45.455 0.00 0.00 37.00 4.40
402 746 3.658757 TGTGGCACCTAATTTGCTTTC 57.341 42.857 16.26 0.00 40.07 2.62
472 823 1.482182 GATTTGGATTGGTTGAGGCCC 59.518 52.381 0.00 0.00 0.00 5.80
485 836 2.912295 TGGTGATGGTGAGAGATTTGGA 59.088 45.455 0.00 0.00 0.00 3.53
486 837 3.276857 CTGGTGATGGTGAGAGATTTGG 58.723 50.000 0.00 0.00 0.00 3.28
488 839 2.240667 CCCTGGTGATGGTGAGAGATTT 59.759 50.000 0.00 0.00 0.00 2.17
489 840 1.842562 CCCTGGTGATGGTGAGAGATT 59.157 52.381 0.00 0.00 0.00 2.40
490 841 1.008815 TCCCTGGTGATGGTGAGAGAT 59.991 52.381 0.00 0.00 0.00 2.75
507 950 0.536460 TCTTCTGCCGGTTTGTTCCC 60.536 55.000 1.90 0.00 0.00 3.97
532 975 1.283613 TGAAACCCCCGCAGTAATCAT 59.716 47.619 0.00 0.00 0.00 2.45
551 994 4.272018 GGAGATTATTACTGTGCAGTGCTG 59.728 45.833 17.60 9.06 42.52 4.41
553 996 4.272018 CAGGAGATTATTACTGTGCAGTGC 59.728 45.833 8.58 8.58 42.52 4.40
573 1045 2.490328 TGCTTTTGTTTTCTCGCAGG 57.510 45.000 0.00 0.00 0.00 4.85
574 1046 4.318263 CCAATTGCTTTTGTTTTCTCGCAG 60.318 41.667 0.00 0.00 0.00 5.18
575 1047 3.555139 CCAATTGCTTTTGTTTTCTCGCA 59.445 39.130 0.00 0.00 0.00 5.10
576 1048 3.801594 TCCAATTGCTTTTGTTTTCTCGC 59.198 39.130 0.00 0.00 0.00 5.03
577 1049 5.519927 AGTTCCAATTGCTTTTGTTTTCTCG 59.480 36.000 0.00 0.00 0.00 4.04
578 1050 6.313658 ACAGTTCCAATTGCTTTTGTTTTCTC 59.686 34.615 0.00 0.00 0.00 2.87
583 1055 5.971763 TGTACAGTTCCAATTGCTTTTGTT 58.028 33.333 0.00 0.00 0.00 2.83
584 1056 5.590530 TGTACAGTTCCAATTGCTTTTGT 57.409 34.783 0.00 4.74 0.00 2.83
585 1057 5.463061 CCTTGTACAGTTCCAATTGCTTTTG 59.537 40.000 0.00 0.00 0.00 2.44
589 1061 4.098914 TCCTTGTACAGTTCCAATTGCT 57.901 40.909 0.00 0.00 0.00 3.91
590 1062 4.846779 TTCCTTGTACAGTTCCAATTGC 57.153 40.909 0.00 0.00 0.00 3.56
591 1063 6.697019 CAGTTTTCCTTGTACAGTTCCAATTG 59.303 38.462 0.00 0.00 0.00 2.32
597 1071 6.431198 TGTTCAGTTTTCCTTGTACAGTTC 57.569 37.500 0.00 0.00 0.00 3.01
600 1074 7.490962 TGTATGTTCAGTTTTCCTTGTACAG 57.509 36.000 0.00 0.00 30.02 2.74
601 1075 7.521423 GCATGTATGTTCAGTTTTCCTTGTACA 60.521 37.037 0.00 0.00 0.00 2.90
602 1076 6.801862 GCATGTATGTTCAGTTTTCCTTGTAC 59.198 38.462 0.00 0.00 0.00 2.90
603 1077 6.488344 TGCATGTATGTTCAGTTTTCCTTGTA 59.512 34.615 0.00 0.00 0.00 2.41
605 1079 5.771469 TGCATGTATGTTCAGTTTTCCTTG 58.229 37.500 0.00 0.00 0.00 3.61
608 1082 5.713025 ACATGCATGTATGTTCAGTTTTCC 58.287 37.500 30.50 0.00 38.05 3.13
616 1090 5.008019 CCAAGGAGTACATGCATGTATGTTC 59.992 44.000 35.33 29.49 44.25 3.18
617 1091 4.883585 CCAAGGAGTACATGCATGTATGTT 59.116 41.667 35.33 25.22 44.25 2.71
620 1094 4.080356 ACACCAAGGAGTACATGCATGTAT 60.080 41.667 35.33 25.24 44.25 2.29
625 1099 2.949177 AACACCAAGGAGTACATGCA 57.051 45.000 0.00 0.00 0.00 3.96
626 1100 5.897377 AATTAACACCAAGGAGTACATGC 57.103 39.130 0.00 0.00 0.00 4.06
627 1101 6.350110 CCCAAATTAACACCAAGGAGTACATG 60.350 42.308 0.00 0.00 0.00 3.21
629 1103 5.074115 CCCAAATTAACACCAAGGAGTACA 58.926 41.667 0.00 0.00 0.00 2.90
630 1104 5.318630 TCCCAAATTAACACCAAGGAGTAC 58.681 41.667 0.00 0.00 0.00 2.73
632 1106 4.407365 CTCCCAAATTAACACCAAGGAGT 58.593 43.478 0.00 0.00 35.88 3.85
633 1107 3.763897 CCTCCCAAATTAACACCAAGGAG 59.236 47.826 0.00 0.00 39.50 3.69
634 1108 3.773560 CCTCCCAAATTAACACCAAGGA 58.226 45.455 0.00 0.00 0.00 3.36
636 1110 2.233676 GGCCTCCCAAATTAACACCAAG 59.766 50.000 0.00 0.00 0.00 3.61
637 1111 2.252714 GGCCTCCCAAATTAACACCAA 58.747 47.619 0.00 0.00 0.00 3.67
638 1112 1.551329 GGGCCTCCCAAATTAACACCA 60.551 52.381 0.84 0.00 44.65 4.17
640 1114 0.815095 CGGGCCTCCCAAATTAACAC 59.185 55.000 0.84 0.00 45.83 3.32
642 1116 1.552578 AACGGGCCTCCCAAATTAAC 58.447 50.000 0.84 0.00 45.83 2.01
643 1117 3.673543 ATAACGGGCCTCCCAAATTAA 57.326 42.857 0.84 0.00 45.83 1.40
646 1120 3.203487 TCTTAATAACGGGCCTCCCAAAT 59.797 43.478 0.84 0.00 45.83 2.32
647 1121 2.577105 TCTTAATAACGGGCCTCCCAAA 59.423 45.455 0.84 0.00 45.83 3.28
648 1122 2.198336 TCTTAATAACGGGCCTCCCAA 58.802 47.619 0.84 0.00 45.83 4.12
650 1124 2.947652 GTTTCTTAATAACGGGCCTCCC 59.052 50.000 0.84 0.00 41.09 4.30
651 1125 3.626217 CAGTTTCTTAATAACGGGCCTCC 59.374 47.826 0.84 0.00 0.00 4.30
653 1127 3.014623 GCAGTTTCTTAATAACGGGCCT 58.985 45.455 0.84 0.00 0.00 5.19
654 1128 2.098607 GGCAGTTTCTTAATAACGGGCC 59.901 50.000 16.12 16.12 40.72 5.80
655 1129 2.750712 TGGCAGTTTCTTAATAACGGGC 59.249 45.455 15.14 15.14 43.16 6.13
656 1130 5.576447 AATGGCAGTTTCTTAATAACGGG 57.424 39.130 0.00 0.00 0.00 5.28
658 1132 6.869421 CCAAATGGCAGTTTCTTAATAACG 57.131 37.500 0.00 0.00 0.00 3.18
682 1174 1.754803 TGAGTAGTAAGCCCGTCCATG 59.245 52.381 0.00 0.00 0.00 3.66
687 1179 2.688958 GAGTGATGAGTAGTAAGCCCGT 59.311 50.000 0.00 0.00 0.00 5.28
688 1180 2.287069 CGAGTGATGAGTAGTAAGCCCG 60.287 54.545 0.00 0.00 0.00 6.13
689 1181 2.688958 ACGAGTGATGAGTAGTAAGCCC 59.311 50.000 0.00 0.00 0.00 5.19
690 1182 3.489398 CCACGAGTGATGAGTAGTAAGCC 60.489 52.174 4.59 0.00 0.00 4.35
691 1183 3.489398 CCCACGAGTGATGAGTAGTAAGC 60.489 52.174 4.59 0.00 0.00 3.09
692 1184 3.695060 ACCCACGAGTGATGAGTAGTAAG 59.305 47.826 4.59 0.00 0.00 2.34
693 1185 3.442625 CACCCACGAGTGATGAGTAGTAA 59.557 47.826 4.59 0.00 40.34 2.24
694 1186 3.014623 CACCCACGAGTGATGAGTAGTA 58.985 50.000 4.59 0.00 40.34 1.82
695 1187 1.819288 CACCCACGAGTGATGAGTAGT 59.181 52.381 4.59 0.00 40.34 2.73
696 1188 1.135139 CCACCCACGAGTGATGAGTAG 59.865 57.143 4.59 0.00 40.34 2.57
707 1199 2.999739 GAAAACGCTCCCACCCACGA 63.000 60.000 0.00 0.00 0.00 4.35
711 1203 0.955919 CTCTGAAAACGCTCCCACCC 60.956 60.000 0.00 0.00 0.00 4.61
714 1206 1.667830 CGCTCTGAAAACGCTCCCA 60.668 57.895 0.00 0.00 0.00 4.37
715 1207 1.668151 ACGCTCTGAAAACGCTCCC 60.668 57.895 0.00 0.00 0.00 4.30
717 1209 1.154580 GCACGCTCTGAAAACGCTC 60.155 57.895 0.00 0.00 0.00 5.03
718 1210 1.835483 CTGCACGCTCTGAAAACGCT 61.835 55.000 0.00 0.00 0.00 5.07
758 1266 5.089970 TGGTGATAGTGAGAGATTTGGTG 57.910 43.478 0.00 0.00 0.00 4.17
782 1293 0.458260 GGTGCCCTTGTGTTTTTCGT 59.542 50.000 0.00 0.00 0.00 3.85
783 1294 0.457851 TGGTGCCCTTGTGTTTTTCG 59.542 50.000 0.00 0.00 0.00 3.46
785 1296 1.567357 AGTGGTGCCCTTGTGTTTTT 58.433 45.000 0.00 0.00 0.00 1.94
786 1297 2.445682 TAGTGGTGCCCTTGTGTTTT 57.554 45.000 0.00 0.00 0.00 2.43
790 1301 1.067635 GCAATTAGTGGTGCCCTTGTG 60.068 52.381 0.00 0.00 34.58 3.33
825 1376 8.700644 GTGCGTAGACTATACAAATTTATCCTG 58.299 37.037 0.00 0.00 0.00 3.86
827 1378 8.583810 TGTGCGTAGACTATACAAATTTATCC 57.416 34.615 0.00 0.00 0.00 2.59
831 1382 8.542497 TTCTTGTGCGTAGACTATACAAATTT 57.458 30.769 9.65 0.00 31.67 1.82
840 1391 8.248253 TCTGAATTTATTCTTGTGCGTAGACTA 58.752 33.333 4.29 0.00 37.67 2.59
842 1393 7.290857 TCTGAATTTATTCTTGTGCGTAGAC 57.709 36.000 4.29 0.00 37.67 2.59
846 1397 6.970484 ACTTTCTGAATTTATTCTTGTGCGT 58.030 32.000 4.29 0.00 37.67 5.24
847 1398 7.217070 GCTACTTTCTGAATTTATTCTTGTGCG 59.783 37.037 4.29 0.00 37.67 5.34
850 1401 8.515414 GGTGCTACTTTCTGAATTTATTCTTGT 58.485 33.333 4.29 0.00 37.67 3.16
853 1404 7.148407 CGTGGTGCTACTTTCTGAATTTATTCT 60.148 37.037 4.29 0.00 37.67 2.40
865 1416 1.993370 CTGCTACGTGGTGCTACTTTC 59.007 52.381 0.00 0.00 0.00 2.62
885 1436 4.618693 GCCGGGTAGATAGATAGAAACTGC 60.619 50.000 2.18 0.00 0.00 4.40
886 1437 4.523173 TGCCGGGTAGATAGATAGAAACTG 59.477 45.833 2.18 0.00 0.00 3.16
887 1438 4.737578 TGCCGGGTAGATAGATAGAAACT 58.262 43.478 2.18 0.00 0.00 2.66
888 1439 4.523558 ACTGCCGGGTAGATAGATAGAAAC 59.476 45.833 19.53 0.00 0.00 2.78
889 1440 4.737578 ACTGCCGGGTAGATAGATAGAAA 58.262 43.478 19.53 0.00 0.00 2.52
890 1441 4.383931 ACTGCCGGGTAGATAGATAGAA 57.616 45.455 19.53 0.00 0.00 2.10
891 1442 4.333690 GAACTGCCGGGTAGATAGATAGA 58.666 47.826 19.53 0.00 0.00 1.98
892 1443 3.127203 CGAACTGCCGGGTAGATAGATAG 59.873 52.174 19.53 0.00 0.00 2.08
893 1444 3.079578 CGAACTGCCGGGTAGATAGATA 58.920 50.000 19.53 0.00 0.00 1.98
894 1445 1.887198 CGAACTGCCGGGTAGATAGAT 59.113 52.381 19.53 0.00 0.00 1.98
910 1461 7.218963 GTGCTTGGAATAATCTGAATTTCGAAC 59.781 37.037 0.00 0.00 0.00 3.95
916 1467 7.893124 ATCTGTGCTTGGAATAATCTGAATT 57.107 32.000 0.00 0.00 0.00 2.17
928 1479 4.508461 CACAAATCAATCTGTGCTTGGA 57.492 40.909 0.00 0.00 36.80 3.53
1011 1569 0.809385 TCTAGTCGACCGCTGAAAGG 59.191 55.000 13.01 0.00 0.00 3.11
1040 1602 5.163281 AGAAGACACATCTTTCTCTGCAT 57.837 39.130 0.00 0.00 45.60 3.96
1058 1620 3.316308 CACCACCACTGGAAAGAAAGAAG 59.684 47.826 0.71 0.00 40.55 2.85
1083 1652 1.616871 TCCTACCCTACAGCCCTACT 58.383 55.000 0.00 0.00 0.00 2.57
1103 1678 5.527582 TGATTATCTCAGTCGAGTCGATTGA 59.472 40.000 30.93 30.93 46.87 2.57
1104 1679 5.752712 TGATTATCTCAGTCGAGTCGATTG 58.247 41.667 26.80 26.80 43.22 2.67
1105 1680 6.016693 ACATGATTATCTCAGTCGAGTCGATT 60.017 38.462 19.75 12.18 40.44 3.34
1130 1705 3.706594 ACGGCTCCATCTTCTTCTCATAA 59.293 43.478 0.00 0.00 0.00 1.90
1131 1706 3.300388 ACGGCTCCATCTTCTTCTCATA 58.700 45.455 0.00 0.00 0.00 2.15
1132 1707 2.114616 ACGGCTCCATCTTCTTCTCAT 58.885 47.619 0.00 0.00 0.00 2.90
1133 1708 1.561643 ACGGCTCCATCTTCTTCTCA 58.438 50.000 0.00 0.00 0.00 3.27
1210 1800 8.879759 TGCTGCATTATACTACTAACTTTTGTC 58.120 33.333 0.00 0.00 0.00 3.18
1249 1848 5.404946 CAGAATATTGTTCTGGTGGCAAAG 58.595 41.667 13.67 0.00 41.54 2.77
1250 1849 4.321899 GCAGAATATTGTTCTGGTGGCAAA 60.322 41.667 20.50 0.00 44.46 3.68
1251 1850 3.193267 GCAGAATATTGTTCTGGTGGCAA 59.807 43.478 20.50 0.00 44.46 4.52
1252 1851 2.754552 GCAGAATATTGTTCTGGTGGCA 59.245 45.455 20.50 0.00 44.46 4.92
1302 1901 2.802740 CTGCTCTCAGCGTGTGCGTA 62.803 60.000 0.00 0.00 46.26 4.42
1311 1916 2.083002 CCTTTTTCCTCTGCTCTCAGC 58.917 52.381 0.00 0.00 42.82 4.26
1386 1996 2.566529 GGTGCTTTAGCGGTTGGC 59.433 61.111 0.00 0.00 45.83 4.52
1410 2020 1.418908 ATAATGGTCGGCCTCCCCTG 61.419 60.000 7.97 0.00 35.27 4.45
1414 2024 1.271217 GGGTTATAATGGTCGGCCTCC 60.271 57.143 7.97 3.76 35.27 4.30
2153 2840 0.179702 CTGCTAGCTCCATGCCTTCA 59.820 55.000 17.23 0.00 44.23 3.02
2181 2868 0.883814 GCTTGGCTCCATGGATCGAG 60.884 60.000 16.63 19.02 0.00 4.04
2249 2964 1.884769 TTAAAACGTACGTGCGCCGG 61.885 55.000 26.01 0.00 42.24 6.13
2250 2965 0.093365 ATTAAAACGTACGTGCGCCG 59.907 50.000 26.01 15.25 44.03 6.46
2255 2970 6.574462 ACGGAATTTCAATTAAAACGTACGTG 59.426 34.615 23.57 7.60 35.57 4.49
2302 3019 1.177401 GGCTTGCTTCCCTAACCTTG 58.823 55.000 0.00 0.00 0.00 3.61
2321 3038 8.889849 AAGAAAAATTATTAACACCGACATCG 57.110 30.769 0.00 0.00 39.44 3.84
2341 3066 6.811170 AGCACGAATGAAAACTCAAAAAGAAA 59.189 30.769 0.00 0.00 0.00 2.52
2342 3067 6.253298 CAGCACGAATGAAAACTCAAAAAGAA 59.747 34.615 0.00 0.00 0.00 2.52
2343 3068 5.743398 CAGCACGAATGAAAACTCAAAAAGA 59.257 36.000 0.00 0.00 0.00 2.52
2344 3069 5.516339 ACAGCACGAATGAAAACTCAAAAAG 59.484 36.000 0.00 0.00 0.00 2.27
2389 3119 2.434185 GGTTCATCTGCCGACGCA 60.434 61.111 0.00 0.00 44.78 5.24
2473 3214 6.094048 TCGATGAACATCCATCTTTTTCCTTC 59.906 38.462 8.87 0.00 40.46 3.46
2474 3215 5.945784 TCGATGAACATCCATCTTTTTCCTT 59.054 36.000 8.87 0.00 40.46 3.36
2477 3218 7.011763 TCTGATCGATGAACATCCATCTTTTTC 59.988 37.037 17.92 0.14 40.46 2.29
2479 3220 6.259608 GTCTGATCGATGAACATCCATCTTTT 59.740 38.462 17.92 0.00 40.46 2.27
2481 3222 5.070180 AGTCTGATCGATGAACATCCATCTT 59.930 40.000 17.92 4.75 40.46 2.40
2482 3223 4.588106 AGTCTGATCGATGAACATCCATCT 59.412 41.667 17.92 7.31 40.46 2.90
2483 3224 4.880759 AGTCTGATCGATGAACATCCATC 58.119 43.478 0.54 12.89 39.52 3.51
2484 3225 4.952071 AGTCTGATCGATGAACATCCAT 57.048 40.909 0.54 2.35 34.40 3.41
2487 3228 6.442112 TCACATAGTCTGATCGATGAACATC 58.558 40.000 0.54 4.88 34.56 3.06
2529 3273 8.298729 TCAAGTGTGAGTAATCAGAGACATAT 57.701 34.615 0.00 0.00 0.00 1.78
2530 3274 7.703058 TCAAGTGTGAGTAATCAGAGACATA 57.297 36.000 0.00 0.00 0.00 2.29
2531 3275 6.596309 TCAAGTGTGAGTAATCAGAGACAT 57.404 37.500 0.00 0.00 0.00 3.06
2532 3276 6.405278 TTCAAGTGTGAGTAATCAGAGACA 57.595 37.500 0.00 0.00 34.49 3.41
2587 3334 4.442893 GGGAGAAACATACCATGTCGATCA 60.443 45.833 0.00 0.00 44.07 2.92
2589 3336 3.454447 TGGGAGAAACATACCATGTCGAT 59.546 43.478 0.00 0.00 44.07 3.59
2590 3337 2.835156 TGGGAGAAACATACCATGTCGA 59.165 45.455 0.00 0.00 44.07 4.20
2591 3338 3.260475 TGGGAGAAACATACCATGTCG 57.740 47.619 0.00 0.00 44.07 4.35
2595 3342 4.949856 GTGTTCATGGGAGAAACATACCAT 59.050 41.667 0.83 0.00 44.17 3.55
2596 3343 4.331968 GTGTTCATGGGAGAAACATACCA 58.668 43.478 0.83 0.00 37.41 3.25
2597 3344 3.694566 GGTGTTCATGGGAGAAACATACC 59.305 47.826 0.83 0.00 0.00 2.73
2598 3345 4.331968 TGGTGTTCATGGGAGAAACATAC 58.668 43.478 0.83 0.00 0.00 2.39
2599 3346 4.649267 TGGTGTTCATGGGAGAAACATA 57.351 40.909 0.83 0.00 0.00 2.29
2600 3347 3.524095 TGGTGTTCATGGGAGAAACAT 57.476 42.857 0.83 0.00 0.00 2.71
2601 3348 2.955660 GTTGGTGTTCATGGGAGAAACA 59.044 45.455 0.00 0.00 0.00 2.83
2602 3349 3.222603 AGTTGGTGTTCATGGGAGAAAC 58.777 45.455 0.00 0.00 0.00 2.78
2603 3350 3.486383 GAGTTGGTGTTCATGGGAGAAA 58.514 45.455 0.00 0.00 0.00 2.52
2604 3351 2.549992 CGAGTTGGTGTTCATGGGAGAA 60.550 50.000 0.00 0.00 0.00 2.87
2605 3352 1.001974 CGAGTTGGTGTTCATGGGAGA 59.998 52.381 0.00 0.00 0.00 3.71
2606 3353 1.001974 TCGAGTTGGTGTTCATGGGAG 59.998 52.381 0.00 0.00 0.00 4.30
2608 3355 2.009774 GATCGAGTTGGTGTTCATGGG 58.990 52.381 0.00 0.00 0.00 4.00
2615 3362 1.442769 GTGCATGATCGAGTTGGTGT 58.557 50.000 0.00 0.00 0.00 4.16
2625 3372 0.830444 ATGGGCCATGGTGCATGATC 60.830 55.000 20.49 0.00 43.81 2.92
2626 3373 1.118965 CATGGGCCATGGTGCATGAT 61.119 55.000 34.26 0.20 43.81 2.45
2627 3374 1.758906 CATGGGCCATGGTGCATGA 60.759 57.895 34.26 0.00 43.81 3.07
2628 3375 2.818841 CATGGGCCATGGTGCATG 59.181 61.111 34.26 12.54 41.10 4.06
2643 3390 2.131709 GCACCATGGAGGCATGCAT 61.132 57.895 21.47 13.78 43.14 3.96
2644 3391 2.756691 GCACCATGGAGGCATGCA 60.757 61.111 21.47 0.00 43.14 3.96
2645 3392 2.441532 AGCACCATGGAGGCATGC 60.442 61.111 26.84 21.45 43.14 4.06
2646 3393 0.467474 ATCAGCACCATGGAGGCATG 60.467 55.000 26.84 21.65 43.14 4.06
2647 3394 0.260816 AATCAGCACCATGGAGGCAT 59.739 50.000 26.84 14.72 43.14 4.40
2648 3395 0.681887 CAATCAGCACCATGGAGGCA 60.682 55.000 26.84 13.39 43.14 4.75
2649 3396 0.394762 TCAATCAGCACCATGGAGGC 60.395 55.000 21.47 20.99 43.14 4.70
2650 3397 2.133281 TTCAATCAGCACCATGGAGG 57.867 50.000 21.47 11.40 45.67 4.30
2651 3398 3.446161 ACAATTCAATCAGCACCATGGAG 59.554 43.478 21.47 12.70 0.00 3.86
2652 3399 3.433343 ACAATTCAATCAGCACCATGGA 58.567 40.909 21.47 0.00 0.00 3.41
2653 3400 3.880047 ACAATTCAATCAGCACCATGG 57.120 42.857 11.19 11.19 0.00 3.66
2654 3401 3.369756 GCAACAATTCAATCAGCACCATG 59.630 43.478 0.00 0.00 0.00 3.66
2655 3402 3.259876 AGCAACAATTCAATCAGCACCAT 59.740 39.130 0.00 0.00 0.00 3.55
2656 3403 2.629137 AGCAACAATTCAATCAGCACCA 59.371 40.909 0.00 0.00 0.00 4.17
2657 3404 3.308438 AGCAACAATTCAATCAGCACC 57.692 42.857 0.00 0.00 0.00 5.01
2658 3405 5.437263 CAAAAGCAACAATTCAATCAGCAC 58.563 37.500 0.00 0.00 0.00 4.40
2659 3406 4.024725 GCAAAAGCAACAATTCAATCAGCA 60.025 37.500 0.00 0.00 0.00 4.41
2660 3407 4.212636 AGCAAAAGCAACAATTCAATCAGC 59.787 37.500 0.00 0.00 0.00 4.26
2661 3408 5.917541 AGCAAAAGCAACAATTCAATCAG 57.082 34.783 0.00 0.00 0.00 2.90
2662 3409 6.591062 GGATAGCAAAAGCAACAATTCAATCA 59.409 34.615 0.00 0.00 0.00 2.57
2663 3410 6.036408 GGGATAGCAAAAGCAACAATTCAATC 59.964 38.462 0.00 0.00 0.00 2.67
2664 3411 5.876460 GGGATAGCAAAAGCAACAATTCAAT 59.124 36.000 0.00 0.00 0.00 2.57
2665 3412 5.237048 GGGATAGCAAAAGCAACAATTCAA 58.763 37.500 0.00 0.00 0.00 2.69
2698 3452 4.041691 ACACAGAGGTTAGTTAGGTTGCAT 59.958 41.667 0.00 0.00 0.00 3.96
2727 3481 1.334689 GCGGGTGCTCAAAGTGTTAAC 60.335 52.381 0.00 0.00 38.39 2.01
2728 3482 0.948678 GCGGGTGCTCAAAGTGTTAA 59.051 50.000 0.00 0.00 38.39 2.01
2735 3495 2.918345 GCATGTGCGGGTGCTCAAA 61.918 57.895 0.00 0.00 46.50 2.69
2820 3615 4.401022 TGGCTTGTTCATGGATGGATATC 58.599 43.478 0.00 0.00 0.00 1.63
2841 3636 2.278206 CGATCTCGTCGGCCACTG 60.278 66.667 2.24 0.00 46.47 3.66
2855 3656 2.278332 TGGTCTCTCCATCGATCGAT 57.722 50.000 24.60 24.60 41.93 3.59
2863 3664 1.840635 GGCCTAGTTTGGTCTCTCCAT 59.159 52.381 0.00 0.00 46.60 3.41
2865 3666 1.276622 TGGCCTAGTTTGGTCTCTCC 58.723 55.000 3.32 0.00 31.91 3.71
2872 3675 4.579454 CATTGATGATGGCCTAGTTTGG 57.421 45.455 3.32 0.00 31.83 3.28
2888 3691 2.674954 CACATTGCTTTTCGCCATTGA 58.325 42.857 0.00 0.00 38.05 2.57
2889 3692 1.127213 GCACATTGCTTTTCGCCATTG 59.873 47.619 0.00 0.00 40.96 2.82
2890 3693 1.431496 GCACATTGCTTTTCGCCATT 58.569 45.000 0.00 0.00 40.96 3.16
2993 3824 4.330944 TCAATGTACATACCCATCGACC 57.669 45.455 9.21 0.00 0.00 4.79
3002 3833 4.260620 GCAACCACCGATCAATGTACATAC 60.261 45.833 9.21 0.95 0.00 2.39
3008 3839 1.305219 CCGCAACCACCGATCAATGT 61.305 55.000 0.00 0.00 0.00 2.71
3009 3840 1.429021 CCGCAACCACCGATCAATG 59.571 57.895 0.00 0.00 0.00 2.82
3010 3841 2.406616 GCCGCAACCACCGATCAAT 61.407 57.895 0.00 0.00 0.00 2.57
3088 3919 2.029666 CGATCGATCCACCAGCCC 59.970 66.667 19.51 0.00 0.00 5.19
3096 3927 2.596631 TCCGACCCCGATCGATCC 60.597 66.667 18.66 4.28 45.13 3.36
3097 3928 2.643844 GTCCGACCCCGATCGATC 59.356 66.667 18.66 15.68 45.13 3.69
3098 3929 3.285215 CGTCCGACCCCGATCGAT 61.285 66.667 18.66 0.00 45.13 3.59
3099 3930 4.471908 TCGTCCGACCCCGATCGA 62.472 66.667 18.66 0.00 45.13 3.59
3100 3931 4.247612 GTCGTCCGACCCCGATCG 62.248 72.222 8.51 8.51 41.89 3.69
3108 3939 2.879462 GATGCGTGGTCGTCCGAC 60.879 66.667 11.22 11.22 43.87 4.79
3109 3940 2.607668 GATGATGCGTGGTCGTCCGA 62.608 60.000 0.00 0.00 39.49 4.55
3110 3941 2.202743 ATGATGCGTGGTCGTCCG 60.203 61.111 0.00 0.00 39.49 4.79
3114 3945 0.871592 ACGATGATGATGCGTGGTCG 60.872 55.000 0.00 0.00 36.83 4.79
3117 3948 2.594214 CGTATACGATGATGATGCGTGG 59.406 50.000 20.58 0.00 43.02 4.94
3132 3963 0.797542 TTTGCGTTGGGTGCGTATAC 59.202 50.000 0.00 0.00 34.24 1.47
3134 3965 1.740297 TATTTGCGTTGGGTGCGTAT 58.260 45.000 0.00 0.00 34.24 3.06
3149 3980 5.409211 TGCACACGCATCAATGATTTATTT 58.591 33.333 0.00 0.00 45.36 1.40
3150 3981 4.996344 TGCACACGCATCAATGATTTATT 58.004 34.783 0.00 0.00 45.36 1.40
3151 3982 4.635833 TGCACACGCATCAATGATTTAT 57.364 36.364 0.00 0.00 45.36 1.40
3236 4075 3.763356 AGCGTGGCAGCTCGATGA 61.763 61.111 13.07 0.00 45.67 2.92
3280 4119 8.807667 AAAGAAAAGAAAACATCACTGCTATG 57.192 30.769 0.00 0.00 0.00 2.23
3281 4120 9.468532 GAAAAGAAAAGAAAACATCACTGCTAT 57.531 29.630 0.00 0.00 0.00 2.97
3282 4121 7.643764 CGAAAAGAAAAGAAAACATCACTGCTA 59.356 33.333 0.00 0.00 0.00 3.49
3283 4122 6.473455 CGAAAAGAAAAGAAAACATCACTGCT 59.527 34.615 0.00 0.00 0.00 4.24
3285 4124 6.751888 ACCGAAAAGAAAAGAAAACATCACTG 59.248 34.615 0.00 0.00 0.00 3.66
3286 4125 6.751888 CACCGAAAAGAAAAGAAAACATCACT 59.248 34.615 0.00 0.00 0.00 3.41
3288 4127 6.750039 GTCACCGAAAAGAAAAGAAAACATCA 59.250 34.615 0.00 0.00 0.00 3.07
3289 4128 6.750039 TGTCACCGAAAAGAAAAGAAAACATC 59.250 34.615 0.00 0.00 0.00 3.06
3290 4129 6.530181 GTGTCACCGAAAAGAAAAGAAAACAT 59.470 34.615 0.00 0.00 0.00 2.71
3291 4130 5.859648 GTGTCACCGAAAAGAAAAGAAAACA 59.140 36.000 0.00 0.00 0.00 2.83
3292 4131 5.859648 TGTGTCACCGAAAAGAAAAGAAAAC 59.140 36.000 0.00 0.00 0.00 2.43
3308 4147 1.335810 CATGCATGCCTATGTGTCACC 59.664 52.381 14.93 0.00 36.65 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.