>input_sequence_54091
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-------------------------------------ACATTCCGGTCCCTTT----CAGCGGTCGACTAGAAAATAAAA
GATGCAGAGAAAGATGTGTCTTC-------TTTCTTTCCAGTGGTGGTGGTAG------TAGGGCTGTAGGGTAGGATCA
ATCGACTCGACTGAGATAATCATGTTAT---GAGAAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCAAGGACG
----CAAACATTGGTCCATCCA--------CGACATGATGACAAAAGTT-AGTA----GTATAATGC----AGCATGCTT
AGCTTGGCTTTGCCACCAGAACAATATTCTGCCGCTTAGGTAGCTCCCTGCTAGAATACAT------ACGCACACGCTGA
GAGCAGAGGA-AAAAGGAGACGAGACGACG-G---ACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGGCCAA
CCGCTAAAGCACCCAAGGACAGGG----GAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGAGA--AGAGAACC
ACGAGC-----ACTGA-----AAAAA---GGA------GAG--GAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGA---
-------------AAGGCTCGAGCTTTTCTTGCTTGCTTTCGGCGCCATGGCGCGGCGGACGGTGCAGC-----------
----TGCTGGCGGCGCT---CCTCGCGGTGACC---GTGGCGGCGGCGGACGACAGCGGCGAGAAGTGCACGGGCGGGTG
CGGGAACCCGTGCGGCATCCCGTGCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACC
CGCCGCCGGCGCCCGTGTACTCGCCGCCGCCCCCCGAGGCCGTCTACCCGCCGCCCACGCCCACGGCCGACTGCCCGCCG
CCCCCCACCGAGGGGTACACGCCCGCGCCCTACACCCCCACGCCGTCCACGCCGTCCGGCGGGTACACCCCGACGACGCC
CTCCGGCGGGTACAATCCGACGCCGTCCGGGGG---CGGGTACAACCCCACGCCGTCCGGGTGGTTCACGCCGCCCAACA
TGCCGTCCTACCTCACCCCGCCCGGCCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCGCCGGGCCTCTCC
GCGTCATGGCGCGCGGCGGCCCTCGCGGCTTTGACGGTGGCCGGAGCCCTGGCCTTGTGATCGTT------CGACGCACC
GATCGCGCCATGCCAAGGTACACGCA----CGCGTGGCCTGAAGGCATGGAGCTAGCAGCTGCACCGC------------
--TCGATCCATGGAGCCAAG--------CGC----CGTGGCGACCATGGTAACC--CAAGCGCGCGCGCGGGCGCATCCA
TGGCCGGCGCACGTACGTTTTAATTGA--AATTCCGTTGATTCCGTGTTGATAATAAGCAAGGTTAGGGAAGCAAGCCG-
-------ATGTCGGTGTTAATAAT--------------------------------------------------------
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------------------
>chr3D_1_TraesCS3D01G003100
TGTAATTCTAGGTCTTGGTTTCAATTCAGTAGGATAATATGAACGAACAATCTAAGAAGGATTGGTTGGGTTCCACCTTT
CTGCATCATGTTCTTGTTGCTCTGATTGATTAGTTCGTTCATGGAGGCCATAACTTCACCTTTT----------------
------CGCTGTCAGACCTGATAATACACATGGAGTTCCATTCGGATCTCTC-----------TATGATTGGTGCTTTAT
CAGATGTCCAGATGCATGGTCTGGAACATGCATATGTTCTGA----AGAA---TATTATTAACTCTTGGCAGCACTGTTG
GACACTCTCAT----ATCTTGTAGTGCTGTCAGACATGGCAATGGCCAAACAGTCTTTCAGCGCACAAGCCCATGCTTCG
TCAGTTGTTGGTGTA-----------------------------------------------------------------
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-----------------------------------------------------------------------AACTGAATA
GGAGTATACCAAATGCTG---CCATGAAAGCAAATTAGGTGCCACATC----AAGAAAGAAAGAAACCTTTCCGTTTGGC
CTGA---ATCACTGAAGCGTCAGGGCCTCAACCAATCCAAA---------------------------------------
-----------------------------------------------------TCTCTCACCATCACCAGGGAACAAACC
GGCAGAAGATGAAGATGATTACTGCGGGGGTTTCAGC-----------------------------ACTGCACAGTAATA
ATCTCCTGCGAGAAAACAAAAGC--AATTGGAACTGTACAAGGAAAACTGAACATACATGCATGTACTCCTTGGTGTTAA
TTTGGGAGGCCCGTT------------------ATTAAGAAACTGCCATTTGGCATGGACGGGCTTACTACTCATCACTC
GTGGGTGGGA-GCGTTTTCAGAGCGTGCAGCG---------------CTGACGCGTCAAGGCCTCCACCAAATCTCTCAC
TATCA---CCAAACGAAAAACACAAGGGCA----------------------------------------CCACTAATTG
CCGACATGGCAGTAGCAGGATAAATTTGTATAGTCTACGCACAAGAATAAATTCAGAAAGTAGCACCACGTAGCAGCAGT
TTCTATCTATCTACCCGGCAGTTCGAAATTCAGATTATTCCAAGCACAGATTGATTTGTGCCTACTGATAGATATATAGG
TAG------ATAGATAGATACACAAAGAAATGAAAA-ACATTCCGGTCCCTTT----CAGCGGTCGACTAGAAAATAAAA
GATGCAGAGAAAGATGTGTCTTC-------TTTCTTTCCAGTGGTGGTGGTAG------TAGGGCTGTAGGGTAGGATCA
ATCGACTCGACTGAGATAATCATGTTAT---GAGAAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCAAGGACG
----CAAACATTGGTCCATCCA--------CGACATGATGACAAAAGTT-AGTA----GTATAATGC----AGCATGCTT
AGCTTGGCTTTGCCACCAGAACAATATTCTGCCGCTTAGGTAGCTCCCTGCTAGAATACAT------ACGCACACGCTGA
GAGCAGAGGA-AAAAGGAGACGAGACGACG-G---ACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGGCCAA
CCGCTAAAGCACCCAAGGACAGGG----GAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGAGA--AGAGAACC
ACGAGC-----ACTGA-----AAAAA---GGA------GAG--GAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGA---
-------------AAGGCTCGAGCTTTTCTTGCTTGCTTTCGGCGCCATGGCGCGGCGGACGGTGCAGC-----------
----TGCTGGCGGCGCT---CCTCGCGGTGACC---GTGGCGGCGGCGGACGACAGCGGCGAGAAGTGCACGGGCGGGTG
CGGGAACCCGTGCGGCATCCCGTGCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACC
CGCCGCCGGCGCCCGTGTACTCGCCGCCGCCCCCCGAGGCCGTCTACCCGCCGCCCACGCCCACGGCCGACTGCCCGCCG
CCCCCCACCGAGGGGTACACGCCCGCGCCCTACACCCCCACGCCGTCCACGCCGTCCGGCGGGTACACCCCGACGACGCC
CTCCGGCGGGTACAATCCGACGCCGTCCGGGGG---CGGGTACAACCCCACGCCGTCCGGGTGGTTCACGCCGCCCAACA
TGCCGTCCTACCTCACCCCGCCCGGCCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCGCCGGGCCTCTCC
GCGTCATGGCGCGCGGCGGCCCTCGCGGCTTTGACGGTGGCCGGAGCCCTGGCCTTGTGATCGTT------CGACGCACC
GATCGCGCCATGCCAAGGTACACGCA----CGCGTGGCCTGAAGGCATGGAGCTAGCAGCTGCACCGC------------
--TCGATCCATGGAGCCAAG--------CGC----CGTGGCGACCATGGTAACC--CAAGCGCGCGCGCGGGCGCATCCA
TGGCCGGCGCACGTACGTTTTAATTGA--AATTCCGTTGATTCCGTGTTGATAATAAGCAAGGTTAGGGAAGCAAGCCG-
-------ATGTCGGTGTTAATAATTTTTCTT--TTTGAG-TTTTCATTCGTGCTGT--TCATGTTCATGTCCTTCATCTG
CGTCGGCAGATGAACCGTTCTTGTCATGTACGTAAGT----TGGGTCTC---GTTTTTTCACTTTG----GTCAATCATA
GGAAGGAAGGAAGGAAGGAAAAAGATGGATGTTCATCGATCAGACTATGTGATACTGATACATATA---TATATATGTCT
CTGATTACTCAC---ACTTGAATTCTACTCCATGTTTCATGTCTCATCTTCTTTGATCGACATGGTATGTTTCTCCCATG
AACACCAACTCGATCATGCACCATGGCCCATGCATGCCTCCATGGTGCTGATTGA-------ATTGTTGCTTTTGCTATC
CCGATCAATGTATGCAACCTAACTAACCTCTGTGTTAGGTGT------TAACACTTTG----------------------
----AGCACCCGCACATGC---GTTGCACCGGCCGCCGGTGCATGCAC------GCACACGCCATCCGATCTTTCTTCAG
CCAAAGTGCACTAGGATATCCATCCATGAACAAGCCA------GTGGCCGACGAGATCGATCGATGGA--GAGACCAAAC
TAGGCCATCATCAATGGCG-AAAAGCAATGTGCCGGGCGGTGCGAAAATGTGTGTGTGCGCGCGCGCGTGCCGTG-----
----------------------CGTCGTGGCAAACGTGTCGACGTCCGAGACGAAGGGGTCGCGGTCGATGGGTATGTAC
ATTGATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCATGTCTTCAATTCCTCCAGGCGTGCAAACGTACGTGCGTGG
GCTGGTGGATCGATCGGGGTCGGACGACCACGCATCATCATCGTATACGCACCCAACGCAAATAAATCATTGATGCGTGT
GCAGTGCAAATATGTACAGTGTAC---TA-TATCATTGGAACTTCGGACTGACGGAAGCTTGCATG----ACTCTCATCG
AGCTGCCACGCTGGATCGATGAACTGCACACTTGCGCACATAGCAGTGATGTTTTCTTTTCTTTTCGGTGACACATAGGC
ATGCATGCATGCACACGT
>chr3A_48
-----------------------------------------------CAATCTAAGAAGGGTTGGTTGGGTTCCTCCTTT
CTGCATCCTGTTCTTGTTCCTCCC-TTGATTTGTTTGTTCATGGAGGCAATAACTTCTAAGTTTTCGTTGCAACTGGATG
CTGGGGCTCTGCCAGATCTGATATAATACAGCATAGAGTACTACCAATTTGGATCTGTGTATGTATGATTGGTGCTTTAT
GAGATGTTGAGATGCATGGTCTGGAACATGCACATATTCTTTCTTGAGAA---TATTATTGACTCTTGGCGGCACTGTTG
GACGCTGGTAC---CATCTTGTAGTGCTGTCAGACATGGCAATGGCCAAACAGTCTTTCAGAGCACAAGCCGCTCAACTT
TGATTGGTCCTTTTATCTGTGATAGACACTGCAGTCCTTGCAAAGTTCATCTCCGAAATGAGAAAAAAAAATCCCGGCAA
AAGAAAAATGGGAAACTACGGAGCAAATCCATTATTCTCACAGCACTACATAGTCTACATTATCCATCATTCAGCTATAA
CTGAAAATTCATCTTGTCTCAGAAAAAACAAAGCAACTGAAGTC---GAAAATCAATACTGAACCTACGGTTACTAGTAG
TA----CCTGTGAATCAGATCGCACCACCGGTTCAGTTTCCCAACAAAAACACGAGTT--AATGCAGCTAGAAATGAATA
GGAGCATTGCCAAATACCACCATCA-----------------------AAGAAAGAAAGAAAGAAACCTCTCCGTTTGGC
GG----CATCACTGAAGCGACAAGGCCTCAACCAAATCTCTC--------------------------------------
-----------------------------------------------------------ACCATCACCAATGAATTTACC
AGCAGAAGATGAAGCTGATTACTGTGGGGTTTTACACTTTGCAGT------------------ACTACTGCACAGTGCTC
CTCTGTCAGAAAAACCAAAAGTACTAATTGAAAAAACAAAATGAAAACTCGACCTACAGTTACTTGTACAAAGTTAATAC
AGTACGTACTCATCAAAGTAAATTAGGAGGCTCATTAAGAAACCTGCCATTGGGCTGAGA--------------------
----GGAGCGTGCGTTTTCAGAACGGACATCACTGAGGCGTCACCCACTGACGCGTCAAGGCCTCGACCAAATCTCTCAC
TATCA---CCAACGA--AAAAACAATATCAGAAGATGAAGATGATGAGGCGCCTCCAACGTTCTCAAGACCCACTAATTG
CCGACATGGCAATAGAATAATGAATTTGTAGCCTCT--GCCCAGGAATAAATTCAAAAAGTAGCACAGCATGCAGTT---
-----TCTATCTACCCGGTACTTGGATATTCAGATTATCCCAAGCACAGATTGATCTGTGCCTACTGATAGATAGATAGA
TATATAGGTATAGATAGATACACAAAGAAATGAAAA-ACATTCCGGTCACTTTCAGGCAGCGGTCGACTAGAAAATAAAG
GGTGCGGAGAAAGATGTGCGTGCCCTTTAATTTCTTTC------TGGTGCTTC------TCTGTGTGTAGGGTAGG----
ATCGACTCGACTGAGATAATCATGCAGATCAGAGAAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCGAGGGAG
------------GGTCCATCCG--------TGATATGATTAGTCCAA---AGTT----GTATAATGC----AGCATGCTT
AGCTTG-----GC----------------TGCCGCTTGGGTAGCTACCTGCTAGAATACACCCACGCACGCACACACTGA
GAGAGCAGAGGAAAAGGAGACGAGACGACG-G---ACGACGACG-------ACCGCACCACTCCACTCCACAAAGCCCAA
CCGCTAAAGCGCC---------------GAGGCCGACCATTATAACCCACACAAATTTCCCACCCAGAGG--AGAGAACC
CCGAGCCGAGCCGAGCACACCAAAAA---GGA------GAG--GAGGAGGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAG
CACGGCCGCGAGAAAGGCTCGAGCTTTTCTTGCTT----TCGGCGCCATGGCGAGGCGGACGGCGCAGCGGTGCGGGCTG
CTGCTGGTGGCGGCGCT---CCTCGCGGTGGTC---GCCGT---GGCGGACGACAGCGGCGAGAAGTGCACGGGCGAGTG
CGGGAACCCGTGCGGCATCCCGTGCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGATGCCCCCGCCCGTCTACTACC
CGCCGCCGGCGCCCGTCTACTCGCCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCACCGCCGACTGCCCGCCG
CCCCCCACCGAGGGCTACACGCCCGCGCCCTACACGCCCACGCCGTCCACACCGTCCGGCGGGTACACCCCGACGACGCC
CTCCGGCGGGTACAATCCGACTCCGTCGGGTGG---CGGGTACAACCCCACGCCGTCCGGGTGGTTCACGCCGCCCAACT
TGCCGTCGTACCTGACCCCGCCGGGGCCGCTCTACCCGCAGGACCCTGGGTTCCGGCCCAACGCCGCGCCGGGCGTCTCC
GCGTCATGGCGCGCGGCGGCCCTCGCGGCTTTGACGGTCGCCGGCGCCCTGGCCTTGTGATCGCCACCGACCGACGCACC
GATCGCGCCATGGCAAGGTACACGTGGGCGCCT----CCGGAAGGCATGGGGCCAGCAGCTGCACCGT------TCGACC
GATCGATCCATGGAGCCGG----TGAGCAGC----AGTGGTGACCATGGTAACC--GAAGGGCGCGCATGCAT-------
-----GGCGTACGTTTTA----AT---TGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGG---GAAGCAGG
TCGATCCATCTCGGTGTTAATAATT----TT--TTTGAG-TTTTCATTCGTGCTGTGTTCATGTTCAGC-CGTACATCGG
CGTCGGCAGATGAACCGTTCTTGTCATGTACGTACGTAAGTTGGGTCTC---G-TATTTCACTTTG----GTCAATCATA
GGAAGGGAAAGGGTCACTACATGTTC------------ATCAGACGATGTGATACTGATACATATT---TAT----GCTT
CTGATTACTCAC---ACTTGAATTCTACTCCATGTTTCATGTCTCATCTTCATGG----TATGT---------TTCGATG
ATCACCAACTC----ATGCACCATGGTGC-----------------------TGA-------GTTGTTGCTTTTGCTATC
CCGATCAATGTGTGCAACCTAACTAACCTCCGTGTTAGGTACATTAACTAACACATCG----------------------
----AGCATCCGCACATGC---GTTGCACCGGCCG---GTACATGCAC------AC----GCCATCCGATCTTTAGCTAA
AGT---TGAGGTAGTATATCCATCCATGAACACGCTA------GTGGCCGACGAGGTCGATCG----ATGGAGAGCAAAT
TAGGCCATCA---ATGGCG-AAAAGCAATGTGCCGGGCGGTGCGGAAATGTGTGT-----------------GTG-----
----------------------CGTCGAGGCAAACGTGTCGATGTCCAAGACCAAGCGGTCGCACTCGGTCGATA-----
---TATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCATGTTTTCAATTCCTCCAGGCGTGCAAACGTACGT------
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------------------
>chr3B_218
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----------GATGCATGGTCTGGAACATGCATATATTCTTTCTTGAGAATATTATTATTAACTCTTGGCAGCACTGTTG
GACACTAGTACTATCATCTTGTAGCACTGTCAGACATGTCAATGGCCAAACAGTCTTTCAGAGCACAAGCCCATGCTTGG
TCAGTTCTTGGGGTCT----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TAACAAAAACAAAAGTAACTGAAGAATAAGAAATTCAATACTGAACCTACGGTTACTAGTAC
TAACTGCCTGTGAATCAGATCGCACTACTGCTTCAGCTTCAGAAGAAACATGAATGAATCAATGCAGCTAGAAATGAATA
GGAGCACTACGAAATAGTACCCCATCAAAGCAAATTAGGTGCCCCATCAAGAAAGAAAGAAAGAAACCTTTCCGTTTGGC
CGGCGTCATCACCGAAGCGTCAAGGCCTCAACCAAATCTCTCGCCATCACCAAGGAATTACCCGGCAGAAGATGAAGATG
GTAAGCGGACGGGTCTACCGCGTCATCACTGAAGCGTCAAGGCCTCAACCGATTCTCTCACCATCACCGAGGAGCAAACC
GGCAGAAGATGAAGGTGATTAGTACCGAGGAATAAATAAATATTCAGCGTCAGGCCTCGACCAATTGCTGCACAATAATC
CTCTGTAAAAGGGAGCAGAAGCAATGTACTTCTA----------------------------------------------
------------------------------CTCGTTAAGAAACTGCCATTTGGTAGGGGGT-------TACTCATCACCC
GTAGGGAGCGTACGTTTTCAGAGCGGA---------GGCGTCGCCCACTGACGCGTCAAGGCCTCGACCAAATCTCTCGC
TGTCATCACCGACGG--AAAAACAAGGGCGGAAGATGAAGACGA-----------CAACGTCCTCAACACCCACTAATTG
CCGACATGACCTTTGATTAAGTTAACTCTGCACCATGAACTAGCTAGAG-------------GCGCCACGTAGCAAGTAC
AGTAGTATCTCACAGTTCCCAGTCTCGATTCCAAGAAGAATAACAAATTCTGCT--------------------------
------------GATAGATGCACCAAGAAATGAAAA-ACATTCCGGTCACTGT----CAGCGGTCGACTAGAAAATAAAA
GGTGCAGAGAAAGATGTGTGCTC-------TTTCTTTCCAGTGGTGGTGGTGGTGGTGCTAGGGCTGTATGGTAGG----
ATCGACTCGACTGAGATAATCATGCAGAGCAT--AAGAAGTTGGAGCCGTTTGAATCACGTCACCTTTTTTGCAAGGACA
----CAAACATTGGTCCATCCA--------CGATATGATTAGTCCAA---AGTTGTACGTATAATGC----AGCATGCTT
AGCTTG-----GCCACCAGAAAAATATTCTGCCGCTTAGGTAGCTCCCTGCTAGAATACACCCACACAC----ACTCAGC
GGAAGAAGATGAAAAGAAAAGGAGACGAGGCGACGACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGCCCAA
CCGCTAAAGCACCCAAGGAGAGG-----GAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGATAGAAGCGAACC
CCGAGCCGAGCACTGA-----AAAAAAAAGGAGAGGAGGAG--AAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAG
CAC-------AGAAAGGCGCGAGCTTTTCTTGCTT----TTGGTGCCATGGCGAGGTGGACGGCGCAGCGGAGCGGGCTG
CTGCTCGTGGCGGCGCT---CCTCGCGGTGGCC---GTGGCGGCGGCGGACGACAGCGGCGAGAAGTGCACGGGCGGGTG
CGGGAACCCGTGCGGCATCCCGTGCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACC
CGCCGCCGGCGCCCGTCTACTCGCCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCACGGCCGACTGCCCGCCG
CCCCCCACCGAGGGGTACACGCCCGCGCCCTACACCCCGACGCCGTCCACGCCCTCCGGCGGGTACACCCCGGCGACCCC
CTCCGGCGGGTACAACCCGACCCCGTCCGGCGGGGACGGGTACAACCCGACGCCGTCCGGGTGGTTCACGCCGCCCAACA
TGCCGTCCTACCTCACCCCGCCCGGCCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCACCGGGCCTCTCC
GCGGCGTGGCGCGCGGCCGCGATCGCTGCCGTGGCCGTCGCCGGCGCCCTGGCCTTGTGATCGCCACCGACCGACGCACC
GATCGCGCCATGCCAAGGCACACGTGCGCGCGCGTCGCCGGAAGGCATGGGGCTAGCAGCTGCACCAT------TCGACC
GGTCGATCCATGGAGCCGGACGTTGAGCCGC----CGTGGTGAGCATGGTAACCTTGAAGCGCGCGCATGCAT-------
-----GGCGTACGTACGTTTTAATTGATGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGGGAAGAAGCAGG
TCGATCCATCTCCGTGTTAATAATT----TT--TTTGAGTTTTTCATTCGTGTTGTGCTCATGTTCATGTCGTACATCGG
-GTCGGCAGATGAACCGTTCTTGTCATGTACGTACGT----TGGGTCTCGTTG-TTTTTCACTTTGGTCAGTCAATCATA
GGAAGGAAGGAAAAGGG--------TGAATGTTCATCGATCAGGCTATGTGATACTGATACATAATATATAT----GTCT
CTGATTACTCACACTACTTGAATTCTACTCCATGTTCCATGTCTCATCTTCTTGGTATCTATGT---------TTCCATG
ATCACCAACTC----ATGCACCATGGTGC-----------------------TGACTGATGAATTGTTGCTTTTGCTATC
CCGATCAATGTGTGCAACCTAAGTAACCTCTGTGTTAGGTACATTAACTAACTAGCCGTC--------GTTAACACTTTG
AGCTAGCATCCGCACATGC---GTTGCACCGGCCG---GTACATGCAC------ACACACGCTATCCGATCTTTCTTCGG
CTAAAGTGCGATAGCATATCCATCCACGAACAAGCTATATATGGTGGCCGACGAGGTCGATCGGTCGATGGAGAGCAAAC
TAGGCCATCA---ATGGCGAAAAAGCAATGTGCCGGGCGGTGCGAAAATGTGTGT-----------------GTGT----
--------GCGCGCGCGCCGTGCGTCGTGGCAAACGTGTCGACGTCCGAGACCAAGGGGTCGCCGTCGATGGATATGTGT
GTGTATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCATGCCTTCAATTGCTCCAGGCGTGCAAACGTACGTGCGTAG
GCTGGT---------------GGATGATCACGCACCATCATCATGTACGCACCCAAGGC----AAATCATTGATGCGTGC
GCAGG-----TATGTACAGTGTACGAGTA-TAACATTGGAACTTCGGAGTGACGGAAGCTTGCATA----ACTTCAATCC
ATCTGCCACGCTGGATTGGTGAGCTGCACAGAGTAGG--------GAT---TTTGTTCTTTTTTTTAGCGACACATAGGC
ATGCATGCA---------
>chr3B_978
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-------------ATAGATACACCAAGAAATGAAAAAACATTCCGGTCACTTT----CAGCGGTCGACTAGAAAATAAAA
GGTGCGGAGAAAGATGTGCGTGCGCTTTGATTTCTTTCTAGTGCTTCTCTG--------------TGTAGGGTAGG----
ATCGACTCGACTGGGATAATCATGCAGATCAGAGGAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCAAGGACA
CAACCAAACATTGGTCCATCCATCCACGATCGACATGATTACAAAAGTTTAGTG----GCATAATGCATCAAGCATGCTT
AACTTAGTA--GCCACCAGCACAATATTCTGCCGCTTAG-----------------------------------------
-AGCAGAGGA-AAAGGACGACGAGACGACG-GACGACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGCCGAG
CCGCTAAAGCGCCCAAGGAGAGGAGAGGGAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGAGAGAAGCGAACC
CCGAGCCGAGCACTGA-----AAAAA---GGAGAGGAGGACACAAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAG
CAC-------AGAAAGGCGCGAGCTTTTCTTGCTT----TCGGCGACATGGCGAGGTGGACGGTGCAGCGGTGCGGGCTG
CTACTGCTGGTGGCGCTCGTCCTCGCGGTGACCGCGGCCGT---AGCGGACGACAGCGGCGAGAAGTGCACCGGCGGGTG
CGGGAACCCGTGCGGCATCCCGTGCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACC
CGCCGCCGGCGCCCGTCTACTCGCCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCGCGGCCGACTGCCCGCCG
CCCCCCACCGAGGGGTACACGCCCGCGCCCTACACGCCGACGCCGTCCACGCCGTCCGGGGGCTACACCCCTGCGACGCC
CTCCGGCGGGTACAACCCTACGCCGTCCGGCGGGGACGGGTACAACCCGACGCCGTCCGGCTGGTTCACGCCGCCCAACA
TGCCGTCGTACCTGACACCGCCGGGGCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCGCCGGGCCTCTTC
GCGTCGTGGCGCGCGGCGACCCTCGCGGCGCTGGCGGTGGCCGCAGCCGTCGCCTTGTGATCGGCCCATCAACGCAGC--
-ATCGTTCCATGCCAAGGTACACGCGTCGCCTGCCG-------GGCATGGAGCCACCAGCTGCACCGAGAGCGATCGGCT
GATCGATCCATGGAGCCGG----TGAGCCGCCGTACGTGGTGACCATGGTGACCTTCAAGCGCGCGCTTGCAT-------
-----GGCGTACGTTTTTCCTCAT---TGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGGGAAGAAGCAGG
TCGATCCATCTCGGTGTTAATAATT----TTTTTTTGAGTTTTTCATTCGTGTTGTGCTCATGTTCATGTCGTACATCGG
-GTCGGCAGATGAACCGTTCTTGTCATGTACGTAAGT----TGGGTCTC---G-TTTTTCGCTTTGGTCAGTCAATCATA
GGAAGGAAGGAAAAGGG--------TGAATGTTCATCGATCAGGCTATGTGATACTGATACATAATATATAT----GTCT
CTGATTACTCACACTACTTGAATTCTACTCCATGTTCCATGTCTCATCTTCTTGGTAT----GT---------CTCCATG
ATCACCAACTC----ATGCATCGTGGTGC-----------------------TGCCTGATGAATTGTTTCTTTTGCTATC
CCGATCATTGTGTGCAACCTAACCAACCTTTGTGTTAGGTACATTAACGAACTAGCTGGTTAACCAGTGTTAACACGTTG
AGC----ACCCGCACATGCGTTGTTGCACCGGCCG---GTACATGCATGAACAAGCACACGCCATCCGATCTTTCTTCGG
CTAAAGTGCGATAGCATATCCATCCATGAACAAGCTATA----GTGGCCGACGAGGTCGATCGGTCGATGGAGAGCAAAC
TAGGCCATCA---ATGGCGAAAAAGCAATGTGCCCGGCGGTGCGGAAATGTGTGT-----------------GTGTGTGT
GTGGGCGCGCGCGCGTGCCGTGCGTCGTGGCAAACGTGTCGACGTCCGAGACCAAGGGGTCGCCGTCGATGGATATGTGT
GTGTATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCATGTTTTCAATTGCTCCAGGCGTGCAAACGTACGTGCGTAG
GCTGGT---------------GGATGATCACGCATCATCATCATGTACGCACCCAAGGC----AAATCATTGATGCGTGT
CCAGG-----TGTATACAGTGTAC---TTGTATCATTGGAACTTCGGACTGACGGAAGTTTGCATGCATGACTCCCATCG
AGCTGCCACGCTGGATCAATGAATTGCACCCTTGCACAACATGGTGAT---TTTTCTTTTCTTTTCAGTGACACATAGGC
ATTCATGCATGCA-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------------S-----
-------S----------S---SSS------S---S------------S--------SSSS-------------------
-------S---S----S------SS-S---SSSSSSSSS-S-SSS-SS-SSS----------------------------
S------SS--------------------------S----SS--------------------------------------
------SSS-S--------------------------------------------------S----------------S-
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-------------------------------------------------------------------------S------
----S--SS-S--SSSSS-------S-----------------S------------------------------------
-S-S------------------S------------SS-SSS---------------------------------------
---------------------------------------------------------------------S----------
--------------S------------------S-S-------------------------------------------S
S---SSSSSS----SSS---SSS-------S--SSSS-S--S-------SS--S----SSS-SS-SSS-SSS-S-SS--S
SS-SS-SSSS-SSSS--------------------------------------S----SSSSSSSSSS----------S-
--S--SS-SS---------------SS--S-S---------------------------------S--------------
------------SS-SS---S-----------------------------------------------------------
-----------S---S-SS--S--------S-S---SS--S--S-----------S-------------------SSSSS
SSSSS---------------S-----S-----------S----------------S------------------S----S
--S---------------------------------------------S-------------------------------
-S-----------------S-------------------------------S------------------------SSSS
------------------------SSSS----------------------------------------------------
---------------------------------------S-------------S--------------------------
-------SSSS-------------------------------------------------S--------------S----
---------------------------------------------------------------------------S----
-------------------S---S--------------------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------------SSSS--------------S--------------------------
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----------------S--------------S------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------SS---------------
-------------------------S-------------S---------------------------S------------
-----------------SSS--------------------S--------------------------SS-SSSSSSSSSS
SSSSS----S------------------------------------------------S----------S-SS----S--
---------S---------------SSSS------------------------------------------S-S----S-
-----------------------------------------------------S--------------------------
-------------SS--S-S-SSSS--S-------------------------------------S------SSSS----
-----------------------------------------------------S-SSSSSSSSSSSSSSSSSS-S-----
-S---------SSSS-----------SS-SSSSSSSSSSSSSSSSSSSSSSS----------------------------
-----------S----------------------------SS------------S-------------------------
-----------------------------------SSS--S---------------------------------------
-S-------SS---S--------------------S-------------------S-------S-S--------S-----
----------SSS------------------------------------------SSSSSSSSSSSSSSSSS--------
----------------------------------------------------S----------S--------S-----SS
S-SS--------------------------------------------------------------------------S-
------SSSSSSSSSSSSSSS---S--S--------------S-S-----------S--SSSS-----------------
----SSSSSS----------------------------------------------------------------S-----
--------------------------------------SSSS-SS-SSSSS---------------S-------------
-------------SSSSS
>forward_1187
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-----------------------------------------------ATTTGGCATGGACGGGCTTA-------------
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>reverse_2965
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGGCGCACGTACGTTTTAAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_1437
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AAGTAGCACCACGTAGCAGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_3394
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATGCCTCCATGGTGCTGATT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
