Multiple sequence alignment - TraesCS3D01G000900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G000900 chr3D 100.000 2371 0 0 1 2371 509226 506856 0.000000e+00 4379.0
1 TraesCS3D01G000900 chr3D 96.774 155 4 1 2218 2371 214070508 214070662 8.410000e-65 257.0
2 TraesCS3D01G000900 chr3D 78.704 324 47 7 1891 2212 352780571 352780268 1.860000e-46 196.0
3 TraesCS3D01G000900 chr3B 91.509 1060 44 12 787 1800 6088724 6089783 0.000000e+00 1417.0
4 TraesCS3D01G000900 chr3B 92.177 294 22 1 60 353 6088095 6088387 4.710000e-112 414.0
5 TraesCS3D01G000900 chr3B 97.608 209 5 0 551 759 6088519 6088727 2.240000e-95 359.0
6 TraesCS3D01G000900 chr2B 82.423 421 48 10 1803 2222 159101435 159101830 6.270000e-91 344.0
7 TraesCS3D01G000900 chr2B 82.185 421 49 10 1803 2222 159100844 159101239 2.920000e-89 339.0
8 TraesCS3D01G000900 chr3A 84.503 342 43 8 1800 2136 689781409 689781745 1.760000e-86 329.0
9 TraesCS3D01G000900 chr3A 85.139 323 44 4 1800 2120 689657584 689657904 6.320000e-86 327.0
10 TraesCS3D01G000900 chr3A 84.830 323 45 4 1800 2120 689651548 689651868 2.940000e-84 322.0
11 TraesCS3D01G000900 chr3A 83.692 325 45 7 1800 2120 689578034 689578354 1.380000e-77 300.0
12 TraesCS3D01G000900 chr3A 82.334 317 34 5 202 506 650043043 650043349 3.020000e-64 255.0
13 TraesCS3D01G000900 chr3A 78.689 305 43 11 205 506 73631963 73631678 1.450000e-42 183.0
14 TraesCS3D01G000900 chr3A 78.599 257 33 4 250 506 73619210 73618976 1.470000e-32 150.0
15 TraesCS3D01G000900 chr3A 84.416 77 12 0 430 506 73630374 73630298 2.530000e-10 76.8
16 TraesCS3D01G000900 chr2A 80.378 423 65 6 1805 2225 670699439 670699033 2.960000e-79 305.0
17 TraesCS3D01G000900 chr2A 84.080 201 31 1 307 506 45133584 45133784 2.400000e-45 193.0
18 TraesCS3D01G000900 chr2A 81.333 150 23 3 361 510 27997936 27998080 1.490000e-22 117.0
19 TraesCS3D01G000900 chr6A 79.907 428 70 12 1803 2226 483545345 483545760 1.380000e-77 300.0
20 TraesCS3D01G000900 chr6A 77.811 338 52 9 1891 2226 611204096 611204412 1.120000e-43 187.0
21 TraesCS3D01G000900 chr5D 98.026 152 1 2 2221 2371 400022905 400022755 1.810000e-66 263.0
22 TraesCS3D01G000900 chr5D 98.649 148 1 1 2225 2371 26175191 26175044 6.500000e-66 261.0
23 TraesCS3D01G000900 chr5D 78.972 214 25 9 309 506 110353791 110353582 6.880000e-26 128.0
24 TraesCS3D01G000900 chr5D 87.013 77 8 2 2163 2238 504022493 504022568 4.200000e-13 86.1
25 TraesCS3D01G000900 chr2D 97.419 155 1 3 2220 2371 195711271 195711425 6.500000e-66 261.0
26 TraesCS3D01G000900 chr2D 98.013 151 2 1 2222 2371 363818370 363818520 6.500000e-66 261.0
27 TraesCS3D01G000900 chr2D 97.386 153 3 1 2220 2371 197850767 197850919 2.340000e-65 259.0
28 TraesCS3D01G000900 chr2D 96.795 156 3 2 2218 2371 441790756 441790601 2.340000e-65 259.0
29 TraesCS3D01G000900 chr2D 88.750 80 8 1 2147 2226 622224002 622223924 1.940000e-16 97.1
30 TraesCS3D01G000900 chr1A 81.009 337 57 6 1803 2136 548233941 548234273 6.500000e-66 261.0
31 TraesCS3D01G000900 chr1A 75.265 283 56 11 235 506 516590461 516590182 3.200000e-24 122.0
32 TraesCS3D01G000900 chr6D 96.815 157 2 2 2216 2371 25702528 25702682 2.340000e-65 259.0
33 TraesCS3D01G000900 chr6D 95.152 165 4 4 2208 2371 271274402 271274563 8.410000e-65 257.0
34 TraesCS3D01G000900 chr6D 81.081 259 30 9 235 480 354104337 354104085 3.110000e-44 189.0
35 TraesCS3D01G000900 chr6B 77.442 430 72 14 1801 2226 643788683 643788275 1.420000e-57 233.0
36 TraesCS3D01G000900 chr7A 82.014 278 38 7 201 472 278452692 278452421 2.370000e-55 226.0
37 TraesCS3D01G000900 chr4B 78.161 348 48 19 1893 2236 558724182 558723859 1.860000e-46 196.0
38 TraesCS3D01G000900 chr4B 86.667 105 9 1 235 339 24915141 24915042 6.930000e-21 111.0
39 TraesCS3D01G000900 chr5A 77.850 307 50 12 209 506 410871251 410870954 8.710000e-40 174.0
40 TraesCS3D01G000900 chr5A 85.714 77 9 2 2163 2238 631806562 631806637 1.950000e-11 80.5
41 TraesCS3D01G000900 chr5A 84.810 79 10 2 2163 2240 52853916 52853993 7.030000e-11 78.7
42 TraesCS3D01G000900 chr4D 81.951 205 19 6 308 506 14938969 14939161 8.770000e-35 158.0
43 TraesCS3D01G000900 chr4D 81.061 132 19 6 307 434 433111473 433111602 1.500000e-17 100.0
44 TraesCS3D01G000900 chr4D 86.667 75 8 2 2163 2236 421890665 421890592 5.430000e-12 82.4
45 TraesCS3D01G000900 chr7D 79.235 183 21 11 339 506 370864935 370865115 6.930000e-21 111.0
46 TraesCS3D01G000900 chr4A 79.630 162 22 5 353 506 471841068 471841226 3.220000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G000900 chr3D 506856 509226 2370 True 4379.0 4379 100.000000 1 2371 1 chr3D.!!$R1 2370
1 TraesCS3D01G000900 chr3B 6088095 6089783 1688 False 730.0 1417 93.764667 60 1800 3 chr3B.!!$F1 1740
2 TraesCS3D01G000900 chr2B 159100844 159101830 986 False 341.5 344 82.304000 1803 2222 2 chr2B.!!$F1 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 760 0.03601 CAGGAGGTTGAATCGGCACT 60.036 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2879 0.108186 TGCATCTTGGTGAGCGTAGG 60.108 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.183793 CGTTGGATCTGGATCACATGA 57.816 47.619 11.93 0.00 39.54 3.07
21 22 3.129109 CGTTGGATCTGGATCACATGAG 58.871 50.000 11.93 0.00 39.54 2.90
22 23 3.474600 GTTGGATCTGGATCACATGAGG 58.525 50.000 11.93 0.00 39.54 3.86
23 24 2.052468 TGGATCTGGATCACATGAGGG 58.948 52.381 11.93 0.00 39.54 4.30
24 25 2.333069 GGATCTGGATCACATGAGGGA 58.667 52.381 11.93 0.00 39.54 4.20
25 26 2.302445 GGATCTGGATCACATGAGGGAG 59.698 54.545 11.93 0.00 39.54 4.30
26 27 2.557555 TCTGGATCACATGAGGGAGT 57.442 50.000 0.00 0.00 0.00 3.85
27 28 2.113807 TCTGGATCACATGAGGGAGTG 58.886 52.381 0.00 0.00 37.10 3.51
29 30 1.833630 TGGATCACATGAGGGAGTGAC 59.166 52.381 0.00 0.00 46.38 3.67
30 31 1.139853 GGATCACATGAGGGAGTGACC 59.860 57.143 0.00 0.00 46.38 4.02
31 32 2.114616 GATCACATGAGGGAGTGACCT 58.885 52.381 0.00 0.00 46.38 3.85
32 33 2.919772 TCACATGAGGGAGTGACCTA 57.080 50.000 0.00 0.00 42.10 3.08
33 34 2.739943 TCACATGAGGGAGTGACCTAG 58.260 52.381 0.00 0.00 42.10 3.02
34 35 1.759445 CACATGAGGGAGTGACCTAGG 59.241 57.143 7.41 7.41 42.10 3.02
35 36 1.343478 ACATGAGGGAGTGACCTAGGG 60.343 57.143 14.81 0.00 42.10 3.53
36 37 1.019650 ATGAGGGAGTGACCTAGGGT 58.980 55.000 14.81 0.00 42.10 4.34
37 38 0.790993 TGAGGGAGTGACCTAGGGTT 59.209 55.000 14.81 0.00 42.10 4.11
38 39 1.273098 TGAGGGAGTGACCTAGGGTTC 60.273 57.143 14.81 2.76 42.10 3.62
39 40 0.790993 AGGGAGTGACCTAGGGTTCA 59.209 55.000 14.81 5.80 39.65 3.18
40 41 1.366435 AGGGAGTGACCTAGGGTTCAT 59.634 52.381 14.81 0.00 39.65 2.57
41 42 2.197465 GGGAGTGACCTAGGGTTCATT 58.803 52.381 14.81 5.38 35.25 2.57
42 43 2.576648 GGGAGTGACCTAGGGTTCATTT 59.423 50.000 14.81 1.70 35.25 2.32
43 44 3.370633 GGGAGTGACCTAGGGTTCATTTC 60.371 52.174 14.81 10.20 35.25 2.17
44 45 3.519913 GGAGTGACCTAGGGTTCATTTCT 59.480 47.826 14.81 2.39 35.25 2.52
45 46 4.715297 GGAGTGACCTAGGGTTCATTTCTA 59.285 45.833 14.81 0.00 35.25 2.10
46 47 5.395435 GGAGTGACCTAGGGTTCATTTCTAC 60.395 48.000 14.81 0.00 35.25 2.59
47 48 5.342866 AGTGACCTAGGGTTCATTTCTACT 58.657 41.667 14.81 3.68 35.25 2.57
48 49 5.422650 AGTGACCTAGGGTTCATTTCTACTC 59.577 44.000 14.81 0.00 35.25 2.59
49 50 5.187186 GTGACCTAGGGTTCATTTCTACTCA 59.813 44.000 14.81 0.00 35.25 3.41
50 51 5.964477 TGACCTAGGGTTCATTTCTACTCAT 59.036 40.000 14.81 0.00 35.25 2.90
51 52 6.098409 TGACCTAGGGTTCATTTCTACTCATC 59.902 42.308 14.81 0.00 35.25 2.92
52 53 6.206042 ACCTAGGGTTCATTTCTACTCATCT 58.794 40.000 14.81 0.00 27.29 2.90
53 54 7.363031 ACCTAGGGTTCATTTCTACTCATCTA 58.637 38.462 14.81 0.00 27.29 1.98
54 55 7.844779 ACCTAGGGTTCATTTCTACTCATCTAA 59.155 37.037 14.81 0.00 27.29 2.10
55 56 8.705594 CCTAGGGTTCATTTCTACTCATCTAAA 58.294 37.037 0.00 0.00 0.00 1.85
56 57 9.757227 CTAGGGTTCATTTCTACTCATCTAAAG 57.243 37.037 0.00 0.00 0.00 1.85
57 58 8.152023 AGGGTTCATTTCTACTCATCTAAAGT 57.848 34.615 0.00 0.00 0.00 2.66
58 59 9.268282 AGGGTTCATTTCTACTCATCTAAAGTA 57.732 33.333 0.00 0.00 0.00 2.24
118 119 7.381139 CGGAGCTTACTTTTTAAAATTCAAGCA 59.619 33.333 26.15 5.42 39.60 3.91
203 204 2.910544 TCTTGGACTAGGTTGGGCTTA 58.089 47.619 0.00 0.00 0.00 3.09
207 208 2.696707 TGGACTAGGTTGGGCTTATACG 59.303 50.000 0.00 0.00 0.00 3.06
299 300 3.416156 GCCTAGATATTGAGCCCAAAGG 58.584 50.000 0.00 0.00 35.67 3.11
343 344 5.144359 GCCCATAATATTTGCGAGTTAACG 58.856 41.667 0.00 0.00 0.00 3.18
353 354 1.484356 CGAGTTAACGAATAGGCCCG 58.516 55.000 0.00 0.00 35.09 6.13
354 355 1.861971 GAGTTAACGAATAGGCCCGG 58.138 55.000 0.00 0.00 0.00 5.73
373 374 4.016706 CTGAGGCCCGACGGGTTT 62.017 66.667 32.76 21.46 46.51 3.27
374 375 3.546714 CTGAGGCCCGACGGGTTTT 62.547 63.158 32.76 18.91 46.51 2.43
375 376 2.281970 GAGGCCCGACGGGTTTTT 60.282 61.111 32.76 16.41 46.51 1.94
376 377 1.003476 GAGGCCCGACGGGTTTTTA 60.003 57.895 32.76 0.00 46.51 1.52
377 378 1.300971 GAGGCCCGACGGGTTTTTAC 61.301 60.000 32.76 15.57 46.51 2.01
378 379 2.679934 GGCCCGACGGGTTTTTACG 61.680 63.158 32.76 6.47 46.51 3.18
379 380 1.960763 GCCCGACGGGTTTTTACGT 60.961 57.895 32.76 0.00 46.51 3.57
380 381 1.506309 GCCCGACGGGTTTTTACGTT 61.506 55.000 32.76 0.00 46.51 3.99
381 382 0.235404 CCCGACGGGTTTTTACGTTG 59.765 55.000 25.54 0.00 44.24 4.10
382 383 0.384601 CCGACGGGTTTTTACGTTGC 60.385 55.000 5.81 0.00 44.24 4.17
383 384 0.384601 CGACGGGTTTTTACGTTGCC 60.385 55.000 0.00 0.00 44.24 4.52
384 385 0.662085 GACGGGTTTTTACGTTGCCA 59.338 50.000 0.00 0.00 44.24 4.92
385 386 0.664224 ACGGGTTTTTACGTTGCCAG 59.336 50.000 0.00 0.00 40.99 4.85
386 387 0.039888 CGGGTTTTTACGTTGCCAGG 60.040 55.000 0.00 0.00 0.00 4.45
387 388 0.319211 GGGTTTTTACGTTGCCAGGC 60.319 55.000 3.66 3.66 0.00 4.85
388 389 0.319211 GGTTTTTACGTTGCCAGGCC 60.319 55.000 9.64 0.00 0.00 5.19
415 416 1.830145 GGCTGATTTCTAGGCCCGA 59.170 57.895 0.00 0.00 38.77 5.14
448 449 1.526887 CGGGCCTAGGATTTCTGCA 59.473 57.895 14.75 0.00 0.00 4.41
454 455 1.417890 CCTAGGATTTCTGCATCGGGT 59.582 52.381 1.05 0.00 0.00 5.28
466 467 3.282374 ATCGGGTTTGGTCAGGCCC 62.282 63.158 0.00 0.00 37.79 5.80
468 469 3.961414 GGGTTTGGTCAGGCCCGA 61.961 66.667 0.00 0.00 36.04 5.14
518 519 3.627395 CCAGGTATGGTGCTAAAGACA 57.373 47.619 0.00 0.00 42.17 3.41
519 520 3.270877 CCAGGTATGGTGCTAAAGACAC 58.729 50.000 0.00 0.00 42.17 3.67
520 521 3.307410 CCAGGTATGGTGCTAAAGACACA 60.307 47.826 0.00 0.00 42.17 3.72
521 522 3.684788 CAGGTATGGTGCTAAAGACACAC 59.315 47.826 0.00 0.00 39.87 3.82
522 523 2.671396 GGTATGGTGCTAAAGACACACG 59.329 50.000 0.00 0.00 39.87 4.49
523 524 1.156736 ATGGTGCTAAAGACACACGC 58.843 50.000 0.00 0.00 39.87 5.34
524 525 1.218875 TGGTGCTAAAGACACACGCG 61.219 55.000 3.53 3.53 39.87 6.01
525 526 1.154654 GTGCTAAAGACACACGCGC 60.155 57.895 5.73 0.00 37.96 6.86
526 527 1.592939 TGCTAAAGACACACGCGCA 60.593 52.632 5.73 0.00 0.00 6.09
527 528 1.154654 GCTAAAGACACACGCGCAC 60.155 57.895 5.73 0.00 0.00 5.34
528 529 1.827315 GCTAAAGACACACGCGCACA 61.827 55.000 5.73 0.00 0.00 4.57
529 530 0.111266 CTAAAGACACACGCGCACAC 60.111 55.000 5.73 0.00 0.00 3.82
530 531 0.806492 TAAAGACACACGCGCACACA 60.806 50.000 5.73 0.00 0.00 3.72
531 532 2.304516 AAAGACACACGCGCACACAC 62.305 55.000 5.73 0.00 0.00 3.82
532 533 3.559344 GACACACGCGCACACACA 61.559 61.111 5.73 0.00 0.00 3.72
533 534 3.767066 GACACACGCGCACACACAC 62.767 63.158 5.73 0.00 0.00 3.82
534 535 3.858989 CACACGCGCACACACACA 61.859 61.111 5.73 0.00 0.00 3.72
535 536 3.860125 ACACGCGCACACACACAC 61.860 61.111 5.73 0.00 0.00 3.82
536 537 3.858989 CACGCGCACACACACACA 61.859 61.111 5.73 0.00 0.00 3.72
537 538 3.860125 ACGCGCACACACACACAC 61.860 61.111 5.73 0.00 0.00 3.82
538 539 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
539 540 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
540 541 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
541 542 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
542 543 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
543 544 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
544 545 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
545 546 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
546 547 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
547 548 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
548 549 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
549 550 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
561 562 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
563 564 2.556189 ACACACACACACACACACAAAT 59.444 40.909 0.00 0.00 0.00 2.32
703 704 8.477419 TCATATGACATGACTGGACTGTATTA 57.523 34.615 0.00 0.00 0.00 0.98
704 705 9.093458 TCATATGACATGACTGGACTGTATTAT 57.907 33.333 0.00 0.00 0.00 1.28
755 756 1.372087 GCTGCAGGAGGTTGAATCGG 61.372 60.000 17.12 0.00 0.00 4.18
756 757 1.372087 CTGCAGGAGGTTGAATCGGC 61.372 60.000 5.57 0.00 0.00 5.54
757 758 1.377202 GCAGGAGGTTGAATCGGCA 60.377 57.895 0.00 0.00 0.00 5.69
758 759 1.648467 GCAGGAGGTTGAATCGGCAC 61.648 60.000 0.00 0.00 0.00 5.01
759 760 0.036010 CAGGAGGTTGAATCGGCACT 60.036 55.000 0.00 0.00 0.00 4.40
760 761 1.207089 CAGGAGGTTGAATCGGCACTA 59.793 52.381 0.00 0.00 0.00 2.74
761 762 1.906574 AGGAGGTTGAATCGGCACTAA 59.093 47.619 0.00 0.00 0.00 2.24
762 763 2.304761 AGGAGGTTGAATCGGCACTAAA 59.695 45.455 0.00 0.00 0.00 1.85
763 764 3.054361 AGGAGGTTGAATCGGCACTAAAT 60.054 43.478 0.00 0.00 0.00 1.40
764 765 3.065371 GGAGGTTGAATCGGCACTAAATG 59.935 47.826 0.00 0.00 0.00 2.32
765 766 3.016736 AGGTTGAATCGGCACTAAATGG 58.983 45.455 0.00 0.00 0.00 3.16
766 767 3.013921 GGTTGAATCGGCACTAAATGGA 58.986 45.455 0.00 0.00 0.00 3.41
767 768 3.442273 GGTTGAATCGGCACTAAATGGAA 59.558 43.478 0.00 0.00 0.00 3.53
768 769 4.082463 GGTTGAATCGGCACTAAATGGAAA 60.082 41.667 0.00 0.00 0.00 3.13
769 770 5.394115 GGTTGAATCGGCACTAAATGGAAAT 60.394 40.000 0.00 0.00 0.00 2.17
770 771 5.913137 TGAATCGGCACTAAATGGAAATT 57.087 34.783 0.00 0.00 0.00 1.82
771 772 5.890334 TGAATCGGCACTAAATGGAAATTC 58.110 37.500 0.00 0.00 0.00 2.17
772 773 5.652014 TGAATCGGCACTAAATGGAAATTCT 59.348 36.000 0.00 0.00 0.00 2.40
773 774 5.757850 ATCGGCACTAAATGGAAATTCTC 57.242 39.130 0.00 0.00 0.00 2.87
774 775 3.621268 TCGGCACTAAATGGAAATTCTCG 59.379 43.478 0.00 0.00 0.00 4.04
775 776 3.242739 CGGCACTAAATGGAAATTCTCGG 60.243 47.826 0.00 0.00 0.00 4.63
776 777 3.945285 GGCACTAAATGGAAATTCTCGGA 59.055 43.478 0.00 0.00 0.00 4.55
777 778 4.035675 GGCACTAAATGGAAATTCTCGGAG 59.964 45.833 0.00 0.00 0.00 4.63
778 779 4.876107 GCACTAAATGGAAATTCTCGGAGA 59.124 41.667 2.97 2.97 0.00 3.71
779 780 5.354234 GCACTAAATGGAAATTCTCGGAGAA 59.646 40.000 21.69 21.69 38.78 2.87
780 781 6.457528 GCACTAAATGGAAATTCTCGGAGAAG 60.458 42.308 23.38 9.87 37.69 2.85
781 782 6.037610 CACTAAATGGAAATTCTCGGAGAAGG 59.962 42.308 23.38 7.63 37.69 3.46
782 783 4.844349 AATGGAAATTCTCGGAGAAGGA 57.156 40.909 23.38 3.55 37.69 3.36
783 784 3.611766 TGGAAATTCTCGGAGAAGGAC 57.388 47.619 23.38 16.03 37.69 3.85
784 785 2.903784 TGGAAATTCTCGGAGAAGGACA 59.096 45.455 23.38 16.45 37.69 4.02
785 786 3.519510 TGGAAATTCTCGGAGAAGGACAT 59.480 43.478 23.38 5.86 37.69 3.06
810 811 4.093998 CACATCTTGGAATAGTCACAGTGC 59.906 45.833 0.00 0.00 0.00 4.40
880 881 5.476614 AGAAGCAGAATTTTCAAAGATGCC 58.523 37.500 0.00 0.00 32.71 4.40
890 891 6.515272 TTTTCAAAGATGCCTGGTCTATTC 57.485 37.500 0.00 0.00 0.00 1.75
922 923 2.224769 GGAAGACTTTGACCATGGACCA 60.225 50.000 21.47 13.11 0.00 4.02
923 924 3.486383 GAAGACTTTGACCATGGACCAA 58.514 45.455 21.47 18.33 0.00 3.67
963 964 1.271054 GCCTGCACAAAGAGAAGAGGA 60.271 52.381 0.00 0.00 0.00 3.71
978 979 0.807667 GAGGACAGCGTATGCAGTGG 60.808 60.000 9.98 0.00 41.35 4.00
991 992 1.679311 CAGTGGGAAGCTGGCTACA 59.321 57.895 0.00 0.00 0.00 2.74
995 996 0.253044 TGGGAAGCTGGCTACATGAC 59.747 55.000 0.00 0.00 0.00 3.06
1009 1016 1.521457 ATGACGATCATGGCGCGTT 60.521 52.632 8.43 0.00 35.43 4.84
1022 1029 2.509561 GCGTTCTTCCTCCCTCGC 60.510 66.667 0.00 0.00 37.17 5.03
1061 1068 1.470098 GGCAATCGTCTGCTGTTTCAT 59.530 47.619 10.50 0.00 42.25 2.57
1072 1079 0.167470 CTGTTTCATGCCACGCTCAG 59.833 55.000 0.00 0.00 0.00 3.35
1132 1145 4.467084 TCGGCAACTCGATGGCCC 62.467 66.667 14.27 0.45 44.90 5.80
1171 1200 6.877236 TCATCATCTATATGTGTGTGTGTGT 58.123 36.000 0.00 0.00 34.50 3.72
1198 1227 4.530857 CGACGGACTCCATGGGCC 62.531 72.222 13.02 10.36 0.00 5.80
1312 1347 0.250770 GTTCCTGAACCACCTCCACC 60.251 60.000 0.00 0.00 35.36 4.61
1315 1350 3.901797 CTGAACCACCTCCACCGGC 62.902 68.421 0.00 0.00 0.00 6.13
1361 1396 1.081242 GACCATGCAAGTTGTGGCG 60.081 57.895 11.47 0.00 36.47 5.69
1465 1505 2.028203 TCGAGCTGATTGATGTGGTTGA 60.028 45.455 0.00 0.00 0.00 3.18
1466 1506 2.094894 CGAGCTGATTGATGTGGTTGAC 59.905 50.000 0.00 0.00 0.00 3.18
1569 1615 4.542735 CACACTAATATACGTGGCGATGA 58.457 43.478 0.00 0.00 35.51 2.92
1595 1642 3.879892 ACTTTTGCTGAGGAAGTTCACTC 59.120 43.478 5.01 9.39 29.81 3.51
1626 1673 8.630054 AATATGTCTTGTAAACTAGCAAACCA 57.370 30.769 0.00 0.00 0.00 3.67
1633 1680 3.542969 AAACTAGCAAACCAGGGGAAT 57.457 42.857 0.00 0.00 0.00 3.01
1638 1685 5.941788 ACTAGCAAACCAGGGGAATTATAG 58.058 41.667 0.00 0.00 0.00 1.31
1647 1694 8.762481 AACCAGGGGAATTATAGTGTTTATTC 57.238 34.615 0.00 0.00 0.00 1.75
1652 1699 6.371389 GGGAATTATAGTGTTTATTCGCTGC 58.629 40.000 0.00 0.00 37.14 5.25
1692 1739 1.282817 TTGTTGACTCGTGTTGGTCG 58.717 50.000 0.00 0.00 35.45 4.79
1695 1742 1.783140 GTTGACTCGTGTTGGTCGTAC 59.217 52.381 0.00 0.00 35.45 3.67
1741 1788 4.651503 TCCTTTTTGCTGTTAACCCAATGA 59.348 37.500 2.48 0.31 0.00 2.57
1756 1803 4.261801 CCCAATGATAGACTTTGACCGTT 58.738 43.478 0.00 0.00 36.25 4.44
1758 1805 5.878116 CCCAATGATAGACTTTGACCGTTAA 59.122 40.000 0.00 0.00 36.25 2.01
1777 1824 2.969443 AATTTGAACGCGTCTCCAAG 57.031 45.000 14.44 0.00 0.00 3.61
1790 1837 4.271291 GCGTCTCCAAGACAAGGAATTATC 59.729 45.833 7.78 0.00 45.30 1.75
1820 1867 5.753921 ACTTAATTAGAACATCTACAGCCGC 59.246 40.000 0.00 0.00 0.00 6.53
1825 1872 0.459899 AACATCTACAGCCGCGATGA 59.540 50.000 8.23 0.00 38.27 2.92
1826 1873 0.249073 ACATCTACAGCCGCGATGAC 60.249 55.000 8.23 0.00 38.27 3.06
1833 1880 1.091771 CAGCCGCGATGACCAAATCT 61.092 55.000 8.23 0.00 0.00 2.40
1834 1881 1.091771 AGCCGCGATGACCAAATCTG 61.092 55.000 8.23 0.00 0.00 2.90
1847 1894 1.250840 AAATCTGGCCCCTCAAACGC 61.251 55.000 0.00 0.00 0.00 4.84
1855 1902 3.121030 CCTCAAACGCGCCCAGAG 61.121 66.667 5.73 8.79 0.00 3.35
1882 1929 2.261671 CGTCAGCGGGCACTAACT 59.738 61.111 0.00 0.00 0.00 2.24
1898 1945 2.761786 AACTGGGCATGCCTCATATT 57.238 45.000 34.70 22.20 36.10 1.28
1912 1959 3.252701 CCTCATATTTGCCACTCTGCATC 59.747 47.826 0.00 0.00 41.70 3.91
1915 1962 0.322816 ATTTGCCACTCTGCATCCGT 60.323 50.000 0.00 0.00 41.70 4.69
1916 1963 1.236616 TTTGCCACTCTGCATCCGTG 61.237 55.000 0.00 0.00 41.70 4.94
1919 1966 0.179073 GCCACTCTGCATCCGTGTAT 60.179 55.000 8.67 0.00 0.00 2.29
1934 1981 1.202582 GTGTATCTCATATCCGGCGCT 59.797 52.381 7.64 0.00 0.00 5.92
1936 1983 2.094700 TGTATCTCATATCCGGCGCTTC 60.095 50.000 7.64 0.00 0.00 3.86
1938 1985 0.315251 TCTCATATCCGGCGCTTCAG 59.685 55.000 7.64 0.00 0.00 3.02
1944 1991 1.971505 ATCCGGCGCTTCAGATCCAA 61.972 55.000 7.64 0.00 0.00 3.53
1962 2009 3.002862 TCCAAACTACACATGCAACGTTC 59.997 43.478 0.00 0.00 0.00 3.95
1978 2025 5.388111 CAACGTTCATCTACTCTACGTGAA 58.612 41.667 0.00 0.00 43.75 3.18
1981 2028 5.049198 ACGTTCATCTACTCTACGTGAACAA 60.049 40.000 14.49 0.00 45.38 2.83
1990 2037 2.030893 TCTACGTGAACAAACGACGGAT 60.031 45.455 0.00 0.00 46.49 4.18
2025 2072 1.401539 GCAAAGGAACACAAGATCGGC 60.402 52.381 0.00 0.00 0.00 5.54
2027 2074 2.100605 AAGGAACACAAGATCGGCTC 57.899 50.000 0.00 0.00 0.00 4.70
2028 2075 0.976641 AGGAACACAAGATCGGCTCA 59.023 50.000 0.00 0.00 0.00 4.26
2033 2080 2.571212 ACACAAGATCGGCTCAAAACA 58.429 42.857 0.00 0.00 0.00 2.83
2034 2081 2.948979 ACACAAGATCGGCTCAAAACAA 59.051 40.909 0.00 0.00 0.00 2.83
2035 2082 3.380004 ACACAAGATCGGCTCAAAACAAA 59.620 39.130 0.00 0.00 0.00 2.83
2045 2092 6.100004 TCGGCTCAAAACAAACATTAACAAA 58.900 32.000 0.00 0.00 0.00 2.83
2069 2116 2.945008 TCGCCACATCCAAAAGATCATC 59.055 45.455 0.00 0.00 30.59 2.92
2078 2125 5.801350 TCCAAAAGATCATCGTTCATCAC 57.199 39.130 0.00 0.00 0.00 3.06
2130 2177 9.234384 CTAGAAACGATATAAACATTGACGAGT 57.766 33.333 0.00 0.00 0.00 4.18
2133 2180 5.047847 ACGATATAAACATTGACGAGTGGG 58.952 41.667 0.00 0.00 0.00 4.61
2136 2183 0.476771 AAACATTGACGAGTGGGGGT 59.523 50.000 0.00 0.00 0.00 4.95
2173 2795 1.228154 GCGGGAACACCACTTCCTT 60.228 57.895 0.00 0.00 39.90 3.36
2197 2819 2.434331 CCTTTGCCCTTCCGGTCA 59.566 61.111 0.00 0.00 0.00 4.02
2198 2820 1.971695 CCTTTGCCCTTCCGGTCAC 60.972 63.158 0.00 0.00 0.00 3.67
2230 2852 4.424430 GCGTACGCGGCTGTGTTG 62.424 66.667 26.17 11.63 40.00 3.33
2231 2853 3.773630 CGTACGCGGCTGTGTTGG 61.774 66.667 18.43 5.93 40.00 3.77
2232 2854 3.419759 GTACGCGGCTGTGTTGGG 61.420 66.667 18.43 0.00 40.00 4.12
2233 2855 3.617735 TACGCGGCTGTGTTGGGA 61.618 61.111 18.43 0.00 40.00 4.37
2234 2856 2.949909 TACGCGGCTGTGTTGGGAT 61.950 57.895 18.43 0.00 40.00 3.85
2235 2857 2.845752 TACGCGGCTGTGTTGGGATC 62.846 60.000 18.43 0.00 40.00 3.36
2236 2858 3.499737 GCGGCTGTGTTGGGATCG 61.500 66.667 0.00 0.00 0.00 3.69
2237 2859 2.047274 CGGCTGTGTTGGGATCGT 60.047 61.111 0.00 0.00 0.00 3.73
2238 2860 1.216977 CGGCTGTGTTGGGATCGTA 59.783 57.895 0.00 0.00 0.00 3.43
2239 2861 0.806102 CGGCTGTGTTGGGATCGTAG 60.806 60.000 0.00 0.00 0.00 3.51
2240 2862 1.090052 GGCTGTGTTGGGATCGTAGC 61.090 60.000 0.00 0.00 0.00 3.58
2241 2863 0.391130 GCTGTGTTGGGATCGTAGCA 60.391 55.000 0.00 0.00 0.00 3.49
2242 2864 1.743772 GCTGTGTTGGGATCGTAGCAT 60.744 52.381 0.00 0.00 0.00 3.79
2243 2865 2.483013 GCTGTGTTGGGATCGTAGCATA 60.483 50.000 0.00 0.00 0.00 3.14
2244 2866 3.792401 CTGTGTTGGGATCGTAGCATAA 58.208 45.455 0.00 0.00 0.00 1.90
2245 2867 4.380531 CTGTGTTGGGATCGTAGCATAAT 58.619 43.478 0.00 0.00 0.00 1.28
2246 2868 4.776349 TGTGTTGGGATCGTAGCATAATT 58.224 39.130 0.00 0.00 0.00 1.40
2247 2869 5.189928 TGTGTTGGGATCGTAGCATAATTT 58.810 37.500 0.00 0.00 0.00 1.82
2248 2870 5.650266 TGTGTTGGGATCGTAGCATAATTTT 59.350 36.000 0.00 0.00 0.00 1.82
2249 2871 6.824196 TGTGTTGGGATCGTAGCATAATTTTA 59.176 34.615 0.00 0.00 0.00 1.52
2250 2872 7.337184 TGTGTTGGGATCGTAGCATAATTTTAA 59.663 33.333 0.00 0.00 0.00 1.52
2251 2873 8.185505 GTGTTGGGATCGTAGCATAATTTTAAA 58.814 33.333 0.00 0.00 0.00 1.52
2252 2874 8.740906 TGTTGGGATCGTAGCATAATTTTAAAA 58.259 29.630 2.51 2.51 0.00 1.52
2253 2875 9.744468 GTTGGGATCGTAGCATAATTTTAAAAT 57.256 29.630 7.64 7.64 0.00 1.82
2264 2886 9.869757 AGCATAATTTTAAAATTTTCCTACGCT 57.130 25.926 26.56 19.58 39.24 5.07
2268 2890 8.528917 AATTTTAAAATTTTCCTACGCTCACC 57.471 30.769 18.40 0.00 35.16 4.02
2269 2891 6.636562 TTTAAAATTTTCCTACGCTCACCA 57.363 33.333 6.72 0.00 0.00 4.17
2270 2892 6.636562 TTAAAATTTTCCTACGCTCACCAA 57.363 33.333 6.72 0.00 0.00 3.67
2271 2893 4.766404 AAATTTTCCTACGCTCACCAAG 57.234 40.909 0.00 0.00 0.00 3.61
2272 2894 3.695830 ATTTTCCTACGCTCACCAAGA 57.304 42.857 0.00 0.00 0.00 3.02
2273 2895 3.695830 TTTTCCTACGCTCACCAAGAT 57.304 42.857 0.00 0.00 0.00 2.40
2274 2896 2.672961 TTCCTACGCTCACCAAGATG 57.327 50.000 0.00 0.00 0.00 2.90
2275 2897 0.175760 TCCTACGCTCACCAAGATGC 59.824 55.000 0.00 0.00 0.00 3.91
2276 2898 0.108186 CCTACGCTCACCAAGATGCA 60.108 55.000 0.00 0.00 0.00 3.96
2277 2899 1.473965 CCTACGCTCACCAAGATGCAT 60.474 52.381 0.00 0.00 0.00 3.96
2278 2900 1.863454 CTACGCTCACCAAGATGCATC 59.137 52.381 19.37 19.37 0.00 3.91
2279 2901 0.251354 ACGCTCACCAAGATGCATCT 59.749 50.000 23.75 23.75 39.22 2.90
2280 2902 1.482182 ACGCTCACCAAGATGCATCTA 59.518 47.619 28.92 12.50 35.76 1.98
2281 2903 2.103771 ACGCTCACCAAGATGCATCTAT 59.896 45.455 28.92 16.11 35.76 1.98
2282 2904 2.479275 CGCTCACCAAGATGCATCTATG 59.521 50.000 28.92 24.39 35.76 2.23
2283 2905 2.812591 GCTCACCAAGATGCATCTATGG 59.187 50.000 33.40 33.40 39.18 2.74
2284 2906 3.495629 GCTCACCAAGATGCATCTATGGA 60.496 47.826 37.45 27.44 37.92 3.41
2285 2907 4.316645 CTCACCAAGATGCATCTATGGAG 58.683 47.826 37.45 32.98 37.92 3.86
2286 2908 3.713248 TCACCAAGATGCATCTATGGAGT 59.287 43.478 37.45 25.35 37.92 3.85
2287 2909 4.063689 CACCAAGATGCATCTATGGAGTC 58.936 47.826 37.45 14.82 37.92 3.36
2288 2910 3.972638 ACCAAGATGCATCTATGGAGTCT 59.027 43.478 37.45 24.67 37.92 3.24
2289 2911 5.011431 CACCAAGATGCATCTATGGAGTCTA 59.989 44.000 37.45 0.00 37.92 2.59
2290 2912 5.011533 ACCAAGATGCATCTATGGAGTCTAC 59.988 44.000 37.45 12.81 37.92 2.59
2291 2913 5.245751 CCAAGATGCATCTATGGAGTCTACT 59.754 44.000 32.66 14.71 37.31 2.57
2292 2914 6.435591 CCAAGATGCATCTATGGAGTCTACTA 59.564 42.308 32.66 0.00 37.31 1.82
2293 2915 7.362834 CCAAGATGCATCTATGGAGTCTACTAG 60.363 44.444 32.66 15.10 37.31 2.57
2294 2916 5.652014 AGATGCATCTATGGAGTCTACTAGC 59.348 44.000 27.73 0.00 34.85 3.42
2295 2917 4.729868 TGCATCTATGGAGTCTACTAGCA 58.270 43.478 0.00 0.00 0.00 3.49
2296 2918 5.140454 TGCATCTATGGAGTCTACTAGCAA 58.860 41.667 0.00 0.00 0.00 3.91
2297 2919 5.010112 TGCATCTATGGAGTCTACTAGCAAC 59.990 44.000 0.00 0.00 0.00 4.17
2298 2920 5.694816 CATCTATGGAGTCTACTAGCAACG 58.305 45.833 0.00 0.00 0.00 4.10
2299 2921 5.032327 TCTATGGAGTCTACTAGCAACGA 57.968 43.478 0.00 0.00 0.00 3.85
2300 2922 5.057819 TCTATGGAGTCTACTAGCAACGAG 58.942 45.833 0.00 0.00 0.00 4.18
2301 2923 2.366533 TGGAGTCTACTAGCAACGAGG 58.633 52.381 0.00 0.00 0.00 4.63
2302 2924 1.677052 GGAGTCTACTAGCAACGAGGG 59.323 57.143 0.00 0.00 0.00 4.30
2303 2925 2.641305 GAGTCTACTAGCAACGAGGGA 58.359 52.381 0.00 0.00 0.00 4.20
2304 2926 3.015327 GAGTCTACTAGCAACGAGGGAA 58.985 50.000 0.00 0.00 0.00 3.97
2305 2927 3.428532 AGTCTACTAGCAACGAGGGAAA 58.571 45.455 0.00 0.00 0.00 3.13
2306 2928 3.830755 AGTCTACTAGCAACGAGGGAAAA 59.169 43.478 0.00 0.00 0.00 2.29
2307 2929 4.082136 AGTCTACTAGCAACGAGGGAAAAG 60.082 45.833 0.00 0.00 0.00 2.27
2308 2930 2.474410 ACTAGCAACGAGGGAAAAGG 57.526 50.000 0.00 0.00 0.00 3.11
2309 2931 1.975680 ACTAGCAACGAGGGAAAAGGA 59.024 47.619 0.00 0.00 0.00 3.36
2310 2932 2.028020 ACTAGCAACGAGGGAAAAGGAG 60.028 50.000 0.00 0.00 0.00 3.69
2311 2933 0.765510 AGCAACGAGGGAAAAGGAGT 59.234 50.000 0.00 0.00 0.00 3.85
2312 2934 0.875059 GCAACGAGGGAAAAGGAGTG 59.125 55.000 0.00 0.00 0.00 3.51
2313 2935 0.875059 CAACGAGGGAAAAGGAGTGC 59.125 55.000 0.00 0.00 0.00 4.40
2314 2936 0.472471 AACGAGGGAAAAGGAGTGCA 59.528 50.000 0.00 0.00 0.00 4.57
2315 2937 0.693049 ACGAGGGAAAAGGAGTGCAT 59.307 50.000 0.00 0.00 0.00 3.96
2316 2938 1.339151 ACGAGGGAAAAGGAGTGCATC 60.339 52.381 0.00 0.00 0.00 3.91
2317 2939 1.065854 CGAGGGAAAAGGAGTGCATCT 60.066 52.381 0.00 0.00 0.00 2.90
2318 2940 2.168521 CGAGGGAAAAGGAGTGCATCTA 59.831 50.000 0.00 0.00 0.00 1.98
2319 2941 3.536570 GAGGGAAAAGGAGTGCATCTAC 58.463 50.000 0.00 0.00 0.00 2.59
2320 2942 2.912956 AGGGAAAAGGAGTGCATCTACA 59.087 45.455 0.00 0.00 0.00 2.74
2321 2943 3.525199 AGGGAAAAGGAGTGCATCTACAT 59.475 43.478 0.00 0.00 0.00 2.29
2322 2944 4.721776 AGGGAAAAGGAGTGCATCTACATA 59.278 41.667 0.00 0.00 0.00 2.29
2323 2945 4.816925 GGGAAAAGGAGTGCATCTACATAC 59.183 45.833 0.00 0.00 0.00 2.39
2324 2946 4.816925 GGAAAAGGAGTGCATCTACATACC 59.183 45.833 0.00 0.00 0.00 2.73
2325 2947 4.423625 AAAGGAGTGCATCTACATACCC 57.576 45.455 0.00 0.00 0.00 3.69
2326 2948 3.336509 AGGAGTGCATCTACATACCCT 57.663 47.619 0.00 0.00 0.00 4.34
2327 2949 3.658725 AGGAGTGCATCTACATACCCTT 58.341 45.455 0.00 0.00 0.00 3.95
2328 2950 3.389329 AGGAGTGCATCTACATACCCTTG 59.611 47.826 0.00 0.00 0.00 3.61
2329 2951 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
2330 2952 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
2331 2953 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
2337 2959 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
2338 2960 2.304092 ACATACCCTTGTAGATCGCGA 58.696 47.619 13.09 13.09 0.00 5.87
2339 2961 2.293677 ACATACCCTTGTAGATCGCGAG 59.706 50.000 16.66 0.00 0.00 5.03
2340 2962 0.666913 TACCCTTGTAGATCGCGAGC 59.333 55.000 18.21 18.21 0.00 5.03
2341 2963 1.658717 CCCTTGTAGATCGCGAGCG 60.659 63.158 19.77 11.64 41.35 5.03
2342 2964 1.658717 CCTTGTAGATCGCGAGCGG 60.659 63.158 19.77 9.89 40.25 5.52
2343 2965 1.355563 CTTGTAGATCGCGAGCGGA 59.644 57.895 19.77 8.43 40.25 5.54
2344 2966 0.248498 CTTGTAGATCGCGAGCGGAA 60.248 55.000 19.77 11.67 40.25 4.30
2345 2967 0.248498 TTGTAGATCGCGAGCGGAAG 60.248 55.000 19.77 0.00 40.25 3.46
2367 2989 3.471495 GTTCCAATGAACGTGGATGAC 57.529 47.619 0.00 0.00 44.62 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.129109 CTCATGTGATCCAGATCCAACG 58.871 50.000 5.22 0.00 37.02 4.10
1 2 3.474600 CCTCATGTGATCCAGATCCAAC 58.525 50.000 5.22 0.00 37.02 3.77
2 3 2.440627 CCCTCATGTGATCCAGATCCAA 59.559 50.000 5.22 0.00 37.02 3.53
3 4 2.052468 CCCTCATGTGATCCAGATCCA 58.948 52.381 5.22 3.75 37.02 3.41
4 5 2.302445 CTCCCTCATGTGATCCAGATCC 59.698 54.545 5.22 0.00 37.02 3.36
6 7 2.704596 CACTCCCTCATGTGATCCAGAT 59.295 50.000 0.00 0.00 36.38 2.90
7 8 2.113807 CACTCCCTCATGTGATCCAGA 58.886 52.381 0.00 0.00 36.38 3.86
8 9 2.113807 TCACTCCCTCATGTGATCCAG 58.886 52.381 0.00 0.00 38.15 3.86
9 10 1.833630 GTCACTCCCTCATGTGATCCA 59.166 52.381 0.00 0.00 43.75 3.41
10 11 1.139853 GGTCACTCCCTCATGTGATCC 59.860 57.143 0.00 0.00 43.75 3.36
11 12 2.114616 AGGTCACTCCCTCATGTGATC 58.885 52.381 0.00 0.00 43.75 2.92
12 13 2.260639 AGGTCACTCCCTCATGTGAT 57.739 50.000 0.00 0.00 43.75 3.06
13 14 2.624293 CCTAGGTCACTCCCTCATGTGA 60.624 54.545 0.00 0.00 40.39 3.58
14 15 1.759445 CCTAGGTCACTCCCTCATGTG 59.241 57.143 0.00 0.00 35.97 3.21
15 16 1.343478 CCCTAGGTCACTCCCTCATGT 60.343 57.143 8.29 0.00 35.97 3.21
16 17 1.343478 ACCCTAGGTCACTCCCTCATG 60.343 57.143 8.29 0.00 35.97 3.07
17 18 1.019650 ACCCTAGGTCACTCCCTCAT 58.980 55.000 8.29 0.00 35.97 2.90
18 19 0.790993 AACCCTAGGTCACTCCCTCA 59.209 55.000 8.29 0.00 33.12 3.86
19 20 1.273098 TGAACCCTAGGTCACTCCCTC 60.273 57.143 8.29 0.00 33.12 4.30
20 21 0.790993 TGAACCCTAGGTCACTCCCT 59.209 55.000 8.29 0.00 33.12 4.20
21 22 1.880941 ATGAACCCTAGGTCACTCCC 58.119 55.000 8.29 0.00 33.12 4.30
22 23 3.519913 AGAAATGAACCCTAGGTCACTCC 59.480 47.826 8.29 0.00 33.12 3.85
23 24 4.828072 AGAAATGAACCCTAGGTCACTC 57.172 45.455 8.29 6.61 33.12 3.51
24 25 5.342866 AGTAGAAATGAACCCTAGGTCACT 58.657 41.667 8.29 2.57 33.12 3.41
25 26 5.187186 TGAGTAGAAATGAACCCTAGGTCAC 59.813 44.000 8.29 0.00 33.12 3.67
26 27 5.338632 TGAGTAGAAATGAACCCTAGGTCA 58.661 41.667 8.29 6.27 33.12 4.02
27 28 5.934402 TGAGTAGAAATGAACCCTAGGTC 57.066 43.478 8.29 0.00 33.12 3.85
28 29 6.206042 AGATGAGTAGAAATGAACCCTAGGT 58.794 40.000 8.29 0.00 37.65 3.08
29 30 6.739331 AGATGAGTAGAAATGAACCCTAGG 57.261 41.667 0.06 0.06 0.00 3.02
30 31 9.757227 CTTTAGATGAGTAGAAATGAACCCTAG 57.243 37.037 0.00 0.00 0.00 3.02
31 32 9.268282 ACTTTAGATGAGTAGAAATGAACCCTA 57.732 33.333 0.00 0.00 0.00 3.53
32 33 8.152023 ACTTTAGATGAGTAGAAATGAACCCT 57.848 34.615 0.00 0.00 0.00 4.34
68 69 7.923878 CCGGTTATTTAATTTGGGTTGGATTAG 59.076 37.037 0.00 0.00 0.00 1.73
141 142 4.517285 GAGAGTGATGAAAGGCATGGTTA 58.483 43.478 0.00 0.00 37.34 2.85
186 187 2.696707 CGTATAAGCCCAACCTAGTCCA 59.303 50.000 0.00 0.00 0.00 4.02
278 279 3.416156 CCTTTGGGCTCAATATCTAGGC 58.584 50.000 0.00 3.05 37.55 3.93
315 316 0.894835 GCAAATATTATGGGCCCGGG 59.105 55.000 19.09 19.09 0.00 5.73
323 324 9.741168 CCTATTCGTTAACTCGCAAATATTATG 57.259 33.333 3.71 0.00 0.00 1.90
324 325 8.440833 GCCTATTCGTTAACTCGCAAATATTAT 58.559 33.333 3.71 0.00 0.00 1.28
363 364 0.384601 GCAACGTAAAAACCCGTCGG 60.385 55.000 3.60 3.60 0.00 4.79
364 365 0.384601 GGCAACGTAAAAACCCGTCG 60.385 55.000 0.00 0.00 0.00 5.12
365 366 0.662085 TGGCAACGTAAAAACCCGTC 59.338 50.000 0.00 0.00 42.51 4.79
366 367 0.664224 CTGGCAACGTAAAAACCCGT 59.336 50.000 0.00 0.00 42.51 5.28
367 368 0.039888 CCTGGCAACGTAAAAACCCG 60.040 55.000 0.00 0.00 42.51 5.28
368 369 0.319211 GCCTGGCAACGTAAAAACCC 60.319 55.000 15.17 0.00 42.51 4.11
369 370 0.319211 GGCCTGGCAACGTAAAAACC 60.319 55.000 22.05 0.00 42.51 3.27
370 371 0.386113 TGGCCTGGCAACGTAAAAAC 59.614 50.000 22.05 0.00 42.51 2.43
371 372 0.671251 CTGGCCTGGCAACGTAAAAA 59.329 50.000 22.05 0.00 42.51 1.94
372 373 1.175983 CCTGGCCTGGCAACGTAAAA 61.176 55.000 22.05 0.00 42.51 1.52
373 374 1.602323 CCTGGCCTGGCAACGTAAA 60.602 57.895 22.05 0.00 42.51 2.01
374 375 2.033448 CCTGGCCTGGCAACGTAA 59.967 61.111 22.05 0.00 42.51 3.18
387 388 0.179006 GAAATCAGCCCCTAGCCTGG 60.179 60.000 0.00 0.00 45.47 4.45
388 389 0.842635 AGAAATCAGCCCCTAGCCTG 59.157 55.000 0.00 0.00 45.47 4.85
394 395 2.235570 GGCCTAGAAATCAGCCCCT 58.764 57.895 0.00 0.00 39.60 4.79
395 396 4.909678 GGCCTAGAAATCAGCCCC 57.090 61.111 0.00 0.00 39.60 5.80
398 399 0.876342 CGTCGGGCCTAGAAATCAGC 60.876 60.000 0.84 0.00 0.00 4.26
429 430 1.227973 GCAGAAATCCTAGGCCCGG 60.228 63.158 2.96 0.00 0.00 5.73
430 431 0.109342 ATGCAGAAATCCTAGGCCCG 59.891 55.000 2.96 0.00 0.00 6.13
431 432 1.879796 CGATGCAGAAATCCTAGGCCC 60.880 57.143 2.96 0.00 0.00 5.80
432 433 1.517242 CGATGCAGAAATCCTAGGCC 58.483 55.000 2.96 0.00 0.00 5.19
437 438 2.094675 CAAACCCGATGCAGAAATCCT 58.905 47.619 0.00 0.00 0.00 3.24
448 449 2.355115 GGCCTGACCAAACCCGAT 59.645 61.111 0.00 0.00 38.86 4.18
514 515 3.261951 GTGTGTGCGCGTGTGTCT 61.262 61.111 8.43 0.00 0.00 3.41
516 517 3.860125 GTGTGTGTGCGCGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
517 518 3.858989 TGTGTGTGTGCGCGTGTG 61.859 61.111 8.43 0.00 0.00 3.82
518 519 3.860125 GTGTGTGTGTGCGCGTGT 61.860 61.111 8.43 0.00 0.00 4.49
519 520 3.858989 TGTGTGTGTGTGCGCGTG 61.859 61.111 8.43 0.00 0.00 5.34
520 521 3.860125 GTGTGTGTGTGTGCGCGT 61.860 61.111 8.43 0.00 0.00 6.01
521 522 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
522 523 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
523 524 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
524 525 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
525 526 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
526 527 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
527 528 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
528 529 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
529 530 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
530 531 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
531 532 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
532 533 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
533 534 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
534 535 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
535 536 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
536 537 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
537 538 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
538 539 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
539 540 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
540 541 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
541 542 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
542 543 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
543 544 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
544 545 6.052360 TCTATATTTGTGTGTGTGTGTGTGT 58.948 36.000 0.00 0.00 0.00 3.72
545 546 6.538189 TCTATATTTGTGTGTGTGTGTGTG 57.462 37.500 0.00 0.00 0.00 3.82
546 547 6.348458 GCATCTATATTTGTGTGTGTGTGTGT 60.348 38.462 0.00 0.00 0.00 3.72
547 548 6.023435 GCATCTATATTTGTGTGTGTGTGTG 58.977 40.000 0.00 0.00 0.00 3.82
548 549 5.163864 CGCATCTATATTTGTGTGTGTGTGT 60.164 40.000 0.00 0.00 0.00 3.72
549 550 5.063312 TCGCATCTATATTTGTGTGTGTGTG 59.937 40.000 0.00 0.00 0.00 3.82
561 562 9.223099 TGATGTTTGATTCATCGCATCTATATT 57.777 29.630 18.08 0.00 42.96 1.28
563 564 8.782339 ATGATGTTTGATTCATCGCATCTATA 57.218 30.769 18.08 6.77 42.96 1.31
703 704 2.183478 TCGAGTGTGATTGCCAACAT 57.817 45.000 0.00 0.00 0.00 2.71
704 705 1.960417 TTCGAGTGTGATTGCCAACA 58.040 45.000 0.00 0.00 0.00 3.33
738 739 1.377202 GCCGATTCAACCTCCTGCA 60.377 57.895 0.00 0.00 0.00 4.41
755 756 4.876107 TCTCCGAGAATTTCCATTTAGTGC 59.124 41.667 0.00 0.00 0.00 4.40
756 757 6.037610 CCTTCTCCGAGAATTTCCATTTAGTG 59.962 42.308 11.29 0.00 33.13 2.74
757 758 6.070194 TCCTTCTCCGAGAATTTCCATTTAGT 60.070 38.462 11.29 0.00 33.13 2.24
758 759 6.258947 GTCCTTCTCCGAGAATTTCCATTTAG 59.741 42.308 11.29 0.00 33.13 1.85
759 760 6.113411 GTCCTTCTCCGAGAATTTCCATTTA 58.887 40.000 11.29 0.00 33.13 1.40
760 761 4.944317 GTCCTTCTCCGAGAATTTCCATTT 59.056 41.667 11.29 0.00 33.13 2.32
761 762 4.019321 TGTCCTTCTCCGAGAATTTCCATT 60.019 41.667 11.29 0.00 33.13 3.16
762 763 3.519510 TGTCCTTCTCCGAGAATTTCCAT 59.480 43.478 11.29 0.00 33.13 3.41
763 764 2.903784 TGTCCTTCTCCGAGAATTTCCA 59.096 45.455 11.29 4.08 33.13 3.53
764 765 3.611766 TGTCCTTCTCCGAGAATTTCC 57.388 47.619 11.29 1.73 33.13 3.13
765 766 3.311048 GCATGTCCTTCTCCGAGAATTTC 59.689 47.826 11.29 5.69 33.13 2.17
766 767 3.274288 GCATGTCCTTCTCCGAGAATTT 58.726 45.455 11.29 0.00 33.13 1.82
767 768 2.237143 TGCATGTCCTTCTCCGAGAATT 59.763 45.455 11.29 0.00 33.13 2.17
768 769 1.833630 TGCATGTCCTTCTCCGAGAAT 59.166 47.619 11.29 0.00 33.13 2.40
769 770 1.066858 GTGCATGTCCTTCTCCGAGAA 60.067 52.381 10.44 10.44 32.50 2.87
770 771 0.532573 GTGCATGTCCTTCTCCGAGA 59.467 55.000 0.00 0.00 0.00 4.04
771 772 0.247460 TGTGCATGTCCTTCTCCGAG 59.753 55.000 0.00 0.00 0.00 4.63
772 773 0.904649 ATGTGCATGTCCTTCTCCGA 59.095 50.000 0.00 0.00 0.00 4.55
773 774 1.134580 AGATGTGCATGTCCTTCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
774 775 2.681848 CAAGATGTGCATGTCCTTCTCC 59.318 50.000 0.00 0.00 0.00 3.71
775 776 2.681848 CCAAGATGTGCATGTCCTTCTC 59.318 50.000 0.00 0.00 0.00 2.87
776 777 2.306805 TCCAAGATGTGCATGTCCTTCT 59.693 45.455 0.00 0.00 0.00 2.85
777 778 2.715046 TCCAAGATGTGCATGTCCTTC 58.285 47.619 0.00 0.00 0.00 3.46
778 779 2.885135 TCCAAGATGTGCATGTCCTT 57.115 45.000 0.00 0.00 0.00 3.36
779 780 2.885135 TTCCAAGATGTGCATGTCCT 57.115 45.000 0.00 0.00 0.00 3.85
780 781 4.202441 ACTATTCCAAGATGTGCATGTCC 58.798 43.478 0.00 0.00 0.00 4.02
781 782 4.877823 TGACTATTCCAAGATGTGCATGTC 59.122 41.667 0.00 0.00 0.00 3.06
782 783 4.637534 GTGACTATTCCAAGATGTGCATGT 59.362 41.667 0.00 0.00 0.00 3.21
783 784 4.637091 TGTGACTATTCCAAGATGTGCATG 59.363 41.667 0.00 0.00 0.00 4.06
784 785 4.847198 TGTGACTATTCCAAGATGTGCAT 58.153 39.130 0.00 0.00 0.00 3.96
785 786 4.256110 CTGTGACTATTCCAAGATGTGCA 58.744 43.478 0.00 0.00 0.00 4.57
810 811 1.660052 CGTCGACACACATTTTGGCAG 60.660 52.381 17.16 0.00 0.00 4.85
880 881 3.551890 CCGTTCGTCAATGAATAGACCAG 59.448 47.826 0.00 0.00 0.00 4.00
890 891 3.493129 TCAAAGTCTTCCGTTCGTCAATG 59.507 43.478 0.00 0.00 0.00 2.82
922 923 4.825634 GGCGTTATTATAGGGCTTCCTTTT 59.174 41.667 0.00 0.00 41.96 2.27
923 924 4.104261 AGGCGTTATTATAGGGCTTCCTTT 59.896 41.667 0.00 0.00 41.96 3.11
978 979 0.175760 TCGTCATGTAGCCAGCTTCC 59.824 55.000 0.00 0.00 0.00 3.46
991 992 1.490693 GAACGCGCCATGATCGTCAT 61.491 55.000 5.73 0.00 37.65 3.06
995 996 1.273887 GAAGAACGCGCCATGATCG 59.726 57.895 5.73 0.00 0.00 3.69
1009 1016 1.452289 CGAGAGCGAGGGAGGAAGA 60.452 63.158 0.00 0.00 40.82 2.87
1048 1055 0.110056 CGTGGCATGAAACAGCAGAC 60.110 55.000 0.00 0.00 0.00 3.51
1152 1165 7.611770 ACAACTACACACACACACATATAGAT 58.388 34.615 0.00 0.00 0.00 1.98
1153 1166 6.988522 ACAACTACACACACACACATATAGA 58.011 36.000 0.00 0.00 0.00 1.98
1154 1167 7.148639 GGAACAACTACACACACACACATATAG 60.149 40.741 0.00 0.00 0.00 1.31
1156 1169 5.468746 GGAACAACTACACACACACACATAT 59.531 40.000 0.00 0.00 0.00 1.78
1171 1200 0.883833 GAGTCCGTCGGGAACAACTA 59.116 55.000 12.29 0.00 46.08 2.24
1198 1227 1.935933 CGACGGAGGGGAATTTAGTG 58.064 55.000 0.00 0.00 0.00 2.74
1224 1253 0.664166 CCATGCGGCGAATAATTGGC 60.664 55.000 12.98 0.00 0.00 4.52
1273 1308 2.146342 CCGTTCTGCAGCCATAATAGG 58.854 52.381 9.47 2.71 0.00 2.57
1274 1309 2.838736 ACCGTTCTGCAGCCATAATAG 58.161 47.619 9.47 0.00 0.00 1.73
1275 1310 3.202906 GAACCGTTCTGCAGCCATAATA 58.797 45.455 9.47 0.00 0.00 0.98
1276 1311 2.017049 GAACCGTTCTGCAGCCATAAT 58.983 47.619 9.47 0.00 0.00 1.28
1315 1350 4.570663 GAGTCGGCGGGGATGTCG 62.571 72.222 7.21 0.00 38.57 4.35
1361 1396 6.136071 GCATATAACGGTGATTCATGTGTTC 58.864 40.000 0.00 0.00 0.00 3.18
1481 1521 2.785258 GCATCCGGCGTCAACTTC 59.215 61.111 6.01 0.00 0.00 3.01
1559 1605 2.043411 CAAAAGTTTGTCATCGCCACG 58.957 47.619 0.00 0.00 33.59 4.94
1569 1615 4.462483 TGAACTTCCTCAGCAAAAGTTTGT 59.538 37.500 5.71 0.00 41.86 2.83
1626 1673 6.710744 CAGCGAATAAACACTATAATTCCCCT 59.289 38.462 0.00 0.00 0.00 4.79
1633 1680 4.771903 TGGGCAGCGAATAAACACTATAA 58.228 39.130 0.00 0.00 0.00 0.98
1638 1685 1.539827 AGTTGGGCAGCGAATAAACAC 59.460 47.619 0.00 0.00 0.00 3.32
1652 1699 5.301045 ACAATATCTCAATCATGCAGTTGGG 59.699 40.000 8.76 6.21 0.00 4.12
1692 1739 5.467735 ACCCTTTTTCGTCTTGTACATGTAC 59.532 40.000 25.99 25.99 36.63 2.90
1695 1742 4.274950 ACACCCTTTTTCGTCTTGTACATG 59.725 41.667 0.00 0.00 0.00 3.21
1741 1788 8.013378 CGTTCAAATTTAACGGTCAAAGTCTAT 58.987 33.333 17.64 0.00 44.49 1.98
1756 1803 4.059511 TCTTGGAGACGCGTTCAAATTTA 58.940 39.130 15.53 2.71 0.00 1.40
1758 1805 2.223377 GTCTTGGAGACGCGTTCAAATT 59.777 45.455 15.53 0.00 35.28 1.82
1800 1847 3.123804 CGCGGCTGTAGATGTTCTAATT 58.876 45.455 0.00 0.00 29.58 1.40
1801 1848 2.361119 TCGCGGCTGTAGATGTTCTAAT 59.639 45.455 6.13 0.00 29.58 1.73
1802 1849 1.746787 TCGCGGCTGTAGATGTTCTAA 59.253 47.619 6.13 0.00 29.58 2.10
1803 1850 1.385528 TCGCGGCTGTAGATGTTCTA 58.614 50.000 6.13 0.00 0.00 2.10
1804 1851 0.747255 ATCGCGGCTGTAGATGTTCT 59.253 50.000 6.13 0.00 0.00 3.01
1805 1852 0.855349 CATCGCGGCTGTAGATGTTC 59.145 55.000 18.80 0.00 37.55 3.18
1806 1853 0.459899 TCATCGCGGCTGTAGATGTT 59.540 50.000 23.14 0.00 41.63 2.71
1807 1854 0.249073 GTCATCGCGGCTGTAGATGT 60.249 55.000 23.14 0.00 41.63 3.06
1825 1872 0.486879 TTTGAGGGGCCAGATTTGGT 59.513 50.000 4.39 0.00 46.80 3.67
1863 1910 2.048597 TTAGTGCCCGCTGACGTG 60.049 61.111 0.00 0.00 37.70 4.49
1864 1911 2.048503 GTTAGTGCCCGCTGACGT 60.049 61.111 0.00 0.00 37.70 4.34
1865 1912 2.094659 CAGTTAGTGCCCGCTGACG 61.095 63.158 0.00 0.00 39.67 4.35
1866 1913 1.741770 CCAGTTAGTGCCCGCTGAC 60.742 63.158 0.00 0.00 0.00 3.51
1867 1914 2.662596 CCAGTTAGTGCCCGCTGA 59.337 61.111 0.00 0.00 0.00 4.26
1868 1915 2.436646 CCCAGTTAGTGCCCGCTG 60.437 66.667 0.00 0.00 0.00 5.18
1869 1916 4.410400 GCCCAGTTAGTGCCCGCT 62.410 66.667 0.00 0.00 0.00 5.52
1870 1917 3.995506 ATGCCCAGTTAGTGCCCGC 62.996 63.158 0.00 0.00 0.00 6.13
1871 1918 2.114670 CATGCCCAGTTAGTGCCCG 61.115 63.158 0.00 0.00 0.00 6.13
1879 1926 2.696707 CAAATATGAGGCATGCCCAGTT 59.303 45.455 33.14 22.44 36.58 3.16
1882 1929 1.042229 GCAAATATGAGGCATGCCCA 58.958 50.000 33.14 28.11 36.58 5.36
1888 1935 2.646930 CAGAGTGGCAAATATGAGGCA 58.353 47.619 0.00 0.46 38.03 4.75
1912 1959 1.467543 CGCCGGATATGAGATACACGG 60.468 57.143 5.05 0.00 39.17 4.94
1915 1962 1.545841 AGCGCCGGATATGAGATACA 58.454 50.000 5.05 0.00 0.00 2.29
1916 1963 2.094700 TGAAGCGCCGGATATGAGATAC 60.095 50.000 5.05 0.00 0.00 2.24
1919 1966 0.315251 CTGAAGCGCCGGATATGAGA 59.685 55.000 5.05 0.00 0.00 3.27
1934 1981 4.650734 TGCATGTGTAGTTTGGATCTGAA 58.349 39.130 0.00 0.00 0.00 3.02
1936 1983 4.669965 CGTTGCATGTGTAGTTTGGATCTG 60.670 45.833 0.00 0.00 0.00 2.90
1938 1985 3.188460 ACGTTGCATGTGTAGTTTGGATC 59.812 43.478 0.00 0.00 0.00 3.36
1944 1991 4.065088 AGATGAACGTTGCATGTGTAGTT 58.935 39.130 5.00 0.00 0.00 2.24
1962 2009 5.283247 GTCGTTTGTTCACGTAGAGTAGATG 59.717 44.000 0.00 0.00 41.16 2.90
1978 2025 5.141568 CGATTTTTGTTATCCGTCGTTTGT 58.858 37.500 0.00 0.00 0.00 2.83
1981 2028 3.425227 GCCGATTTTTGTTATCCGTCGTT 60.425 43.478 0.00 0.00 0.00 3.85
1990 2037 3.319405 TCCTTTGCAGCCGATTTTTGTTA 59.681 39.130 0.00 0.00 0.00 2.41
2025 2072 7.630606 GCGAAGTTTGTTAATGTTTGTTTTGAG 59.369 33.333 0.00 0.00 0.00 3.02
2027 2074 6.680758 GGCGAAGTTTGTTAATGTTTGTTTTG 59.319 34.615 0.00 0.00 0.00 2.44
2028 2075 6.369065 TGGCGAAGTTTGTTAATGTTTGTTTT 59.631 30.769 0.00 0.00 0.00 2.43
2033 2080 5.000012 TGTGGCGAAGTTTGTTAATGTTT 58.000 34.783 0.00 0.00 0.00 2.83
2034 2081 4.640789 TGTGGCGAAGTTTGTTAATGTT 57.359 36.364 0.00 0.00 0.00 2.71
2035 2082 4.320935 GGATGTGGCGAAGTTTGTTAATGT 60.321 41.667 0.00 0.00 0.00 2.71
2045 2092 2.270352 TCTTTTGGATGTGGCGAAGT 57.730 45.000 0.00 0.00 0.00 3.01
2069 2116 1.459592 GAACTTGTCCGGTGATGAACG 59.540 52.381 0.00 0.00 0.00 3.95
2104 2151 9.234384 ACTCGTCAATGTTTATATCGTTTCTAG 57.766 33.333 0.00 0.00 0.00 2.43
2107 2154 7.117454 CCACTCGTCAATGTTTATATCGTTTC 58.883 38.462 0.00 0.00 0.00 2.78
2159 2781 1.515521 CCGGCAAGGAAGTGGTGTTC 61.516 60.000 0.00 0.00 45.00 3.18
2161 2783 2.113139 CCGGCAAGGAAGTGGTGT 59.887 61.111 0.00 0.00 45.00 4.16
2166 2788 3.146828 AAAGGCCCGGCAAGGAAGT 62.147 57.895 12.58 0.00 45.00 3.01
2215 2837 3.419759 CCCAACACAGCCGCGTAC 61.420 66.667 4.92 0.00 0.00 3.67
2216 2838 2.845752 GATCCCAACACAGCCGCGTA 62.846 60.000 4.92 0.00 0.00 4.42
2217 2839 4.329545 ATCCCAACACAGCCGCGT 62.330 61.111 4.92 0.00 0.00 6.01
2218 2840 3.499737 GATCCCAACACAGCCGCG 61.500 66.667 0.00 0.00 0.00 6.46
2222 2844 0.391130 TGCTACGATCCCAACACAGC 60.391 55.000 0.00 0.00 0.00 4.40
2223 2845 2.315925 ATGCTACGATCCCAACACAG 57.684 50.000 0.00 0.00 0.00 3.66
2224 2846 3.897141 TTATGCTACGATCCCAACACA 57.103 42.857 0.00 0.00 0.00 3.72
2225 2847 5.751243 AAATTATGCTACGATCCCAACAC 57.249 39.130 0.00 0.00 0.00 3.32
2226 2848 7.867305 TTAAAATTATGCTACGATCCCAACA 57.133 32.000 0.00 0.00 0.00 3.33
2227 2849 9.744468 ATTTTAAAATTATGCTACGATCCCAAC 57.256 29.630 7.64 0.00 0.00 3.77
2238 2860 9.869757 AGCGTAGGAAAATTTTAAAATTATGCT 57.130 25.926 23.01 22.85 37.62 3.79
2242 2864 9.628746 GGTGAGCGTAGGAAAATTTTAAAATTA 57.371 29.630 23.01 7.61 37.62 1.40
2243 2865 8.145122 TGGTGAGCGTAGGAAAATTTTAAAATT 58.855 29.630 18.40 18.40 40.15 1.82
2244 2866 7.662897 TGGTGAGCGTAGGAAAATTTTAAAAT 58.337 30.769 7.64 7.64 0.00 1.82
2245 2867 7.040473 TGGTGAGCGTAGGAAAATTTTAAAA 57.960 32.000 2.75 2.51 0.00 1.52
2246 2868 6.636562 TGGTGAGCGTAGGAAAATTTTAAA 57.363 33.333 2.75 0.00 0.00 1.52
2247 2869 6.487331 TCTTGGTGAGCGTAGGAAAATTTTAA 59.513 34.615 2.75 0.00 0.00 1.52
2248 2870 5.998981 TCTTGGTGAGCGTAGGAAAATTTTA 59.001 36.000 2.75 0.00 0.00 1.52
2249 2871 4.825085 TCTTGGTGAGCGTAGGAAAATTTT 59.175 37.500 2.28 2.28 0.00 1.82
2250 2872 4.394729 TCTTGGTGAGCGTAGGAAAATTT 58.605 39.130 0.00 0.00 0.00 1.82
2251 2873 4.015872 TCTTGGTGAGCGTAGGAAAATT 57.984 40.909 0.00 0.00 0.00 1.82
2252 2874 3.695830 TCTTGGTGAGCGTAGGAAAAT 57.304 42.857 0.00 0.00 0.00 1.82
2253 2875 3.334691 CATCTTGGTGAGCGTAGGAAAA 58.665 45.455 0.00 0.00 0.00 2.29
2254 2876 2.935238 GCATCTTGGTGAGCGTAGGAAA 60.935 50.000 0.00 0.00 0.00 3.13
2255 2877 1.405526 GCATCTTGGTGAGCGTAGGAA 60.406 52.381 0.00 0.00 0.00 3.36
2256 2878 0.175760 GCATCTTGGTGAGCGTAGGA 59.824 55.000 0.00 0.00 0.00 2.94
2257 2879 0.108186 TGCATCTTGGTGAGCGTAGG 60.108 55.000 0.00 0.00 0.00 3.18
2258 2880 1.863454 GATGCATCTTGGTGAGCGTAG 59.137 52.381 19.70 0.00 0.00 3.51
2259 2881 1.482182 AGATGCATCTTGGTGAGCGTA 59.518 47.619 23.75 0.00 31.97 4.42
2260 2882 0.251354 AGATGCATCTTGGTGAGCGT 59.749 50.000 23.75 0.00 31.97 5.07
2261 2883 2.229675 TAGATGCATCTTGGTGAGCG 57.770 50.000 32.94 0.00 38.32 5.03
2262 2884 2.812591 CCATAGATGCATCTTGGTGAGC 59.187 50.000 32.94 0.94 38.32 4.26
2263 2885 4.202336 ACTCCATAGATGCATCTTGGTGAG 60.202 45.833 35.34 31.32 38.32 3.51
2264 2886 3.713248 ACTCCATAGATGCATCTTGGTGA 59.287 43.478 35.34 26.11 38.32 4.02
2265 2887 4.063689 GACTCCATAGATGCATCTTGGTG 58.936 47.826 33.33 32.47 38.32 4.17
2266 2888 3.972638 AGACTCCATAGATGCATCTTGGT 59.027 43.478 33.33 24.71 38.32 3.67
2267 2889 4.620589 AGACTCCATAGATGCATCTTGG 57.379 45.455 32.94 32.05 38.32 3.61
2268 2890 6.343716 AGTAGACTCCATAGATGCATCTTG 57.656 41.667 32.94 26.28 38.32 3.02
2269 2891 6.152661 GCTAGTAGACTCCATAGATGCATCTT 59.847 42.308 32.94 18.09 38.32 2.40
2270 2892 5.652014 GCTAGTAGACTCCATAGATGCATCT 59.348 44.000 30.85 30.85 40.86 2.90
2271 2893 5.417266 TGCTAGTAGACTCCATAGATGCATC 59.583 44.000 19.37 19.37 0.00 3.91
2272 2894 5.328565 TGCTAGTAGACTCCATAGATGCAT 58.671 41.667 0.00 0.00 0.00 3.96
2273 2895 4.729868 TGCTAGTAGACTCCATAGATGCA 58.270 43.478 0.00 0.00 0.00 3.96
2274 2896 5.465935 GTTGCTAGTAGACTCCATAGATGC 58.534 45.833 0.00 0.00 0.00 3.91
2275 2897 5.470437 TCGTTGCTAGTAGACTCCATAGATG 59.530 44.000 0.00 0.00 0.00 2.90
2276 2898 5.622180 TCGTTGCTAGTAGACTCCATAGAT 58.378 41.667 0.00 0.00 0.00 1.98
2277 2899 5.032327 TCGTTGCTAGTAGACTCCATAGA 57.968 43.478 0.00 0.00 0.00 1.98
2278 2900 4.214545 CCTCGTTGCTAGTAGACTCCATAG 59.785 50.000 0.00 0.00 0.00 2.23
2279 2901 4.135306 CCTCGTTGCTAGTAGACTCCATA 58.865 47.826 0.00 0.00 0.00 2.74
2280 2902 2.952978 CCTCGTTGCTAGTAGACTCCAT 59.047 50.000 0.00 0.00 0.00 3.41
2281 2903 2.366533 CCTCGTTGCTAGTAGACTCCA 58.633 52.381 0.00 0.00 0.00 3.86
2282 2904 1.677052 CCCTCGTTGCTAGTAGACTCC 59.323 57.143 0.00 0.00 0.00 3.85
2283 2905 2.641305 TCCCTCGTTGCTAGTAGACTC 58.359 52.381 0.00 0.00 0.00 3.36
2284 2906 2.803030 TCCCTCGTTGCTAGTAGACT 57.197 50.000 0.00 0.00 0.00 3.24
2285 2907 3.863142 TTTCCCTCGTTGCTAGTAGAC 57.137 47.619 0.00 0.00 0.00 2.59
2286 2908 3.194968 CCTTTTCCCTCGTTGCTAGTAGA 59.805 47.826 0.00 0.00 0.00 2.59
2287 2909 3.194968 TCCTTTTCCCTCGTTGCTAGTAG 59.805 47.826 0.00 0.00 0.00 2.57
2288 2910 3.167485 TCCTTTTCCCTCGTTGCTAGTA 58.833 45.455 0.00 0.00 0.00 1.82
2289 2911 1.975680 TCCTTTTCCCTCGTTGCTAGT 59.024 47.619 0.00 0.00 0.00 2.57
2290 2912 2.028020 ACTCCTTTTCCCTCGTTGCTAG 60.028 50.000 0.00 0.00 0.00 3.42
2291 2913 1.975680 ACTCCTTTTCCCTCGTTGCTA 59.024 47.619 0.00 0.00 0.00 3.49
2292 2914 0.765510 ACTCCTTTTCCCTCGTTGCT 59.234 50.000 0.00 0.00 0.00 3.91
2293 2915 0.875059 CACTCCTTTTCCCTCGTTGC 59.125 55.000 0.00 0.00 0.00 4.17
2294 2916 0.875059 GCACTCCTTTTCCCTCGTTG 59.125 55.000 0.00 0.00 0.00 4.10
2295 2917 0.472471 TGCACTCCTTTTCCCTCGTT 59.528 50.000 0.00 0.00 0.00 3.85
2296 2918 0.693049 ATGCACTCCTTTTCCCTCGT 59.307 50.000 0.00 0.00 0.00 4.18
2297 2919 1.065854 AGATGCACTCCTTTTCCCTCG 60.066 52.381 0.00 0.00 0.00 4.63
2298 2920 2.797177 AGATGCACTCCTTTTCCCTC 57.203 50.000 0.00 0.00 0.00 4.30
2299 2921 2.912956 TGTAGATGCACTCCTTTTCCCT 59.087 45.455 0.00 0.00 0.00 4.20
2300 2922 3.350219 TGTAGATGCACTCCTTTTCCC 57.650 47.619 0.00 0.00 0.00 3.97
2301 2923 4.816925 GGTATGTAGATGCACTCCTTTTCC 59.183 45.833 0.00 0.00 0.00 3.13
2302 2924 4.816925 GGGTATGTAGATGCACTCCTTTTC 59.183 45.833 0.00 0.00 0.00 2.29
2303 2925 4.475016 AGGGTATGTAGATGCACTCCTTTT 59.525 41.667 0.00 0.00 0.00 2.27
2304 2926 4.040755 AGGGTATGTAGATGCACTCCTTT 58.959 43.478 0.00 0.00 0.00 3.11
2305 2927 3.658725 AGGGTATGTAGATGCACTCCTT 58.341 45.455 0.00 0.00 0.00 3.36
2306 2928 3.336509 AGGGTATGTAGATGCACTCCT 57.663 47.619 0.00 0.00 0.00 3.69
2307 2929 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
2308 2930 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
2317 2939 3.479489 TCGCGATCTACAAGGGTATGTA 58.521 45.455 3.71 0.00 34.75 2.29
2318 2940 2.293677 CTCGCGATCTACAAGGGTATGT 59.706 50.000 10.36 0.00 37.32 2.29
2319 2941 2.922758 GCTCGCGATCTACAAGGGTATG 60.923 54.545 10.36 0.00 0.00 2.39
2320 2942 1.269998 GCTCGCGATCTACAAGGGTAT 59.730 52.381 10.36 0.00 0.00 2.73
2321 2943 0.666913 GCTCGCGATCTACAAGGGTA 59.333 55.000 10.36 0.00 0.00 3.69
2322 2944 1.437986 GCTCGCGATCTACAAGGGT 59.562 57.895 10.36 0.00 0.00 4.34
2323 2945 1.658717 CGCTCGCGATCTACAAGGG 60.659 63.158 10.36 0.00 42.83 3.95
2324 2946 1.658717 CCGCTCGCGATCTACAAGG 60.659 63.158 10.36 0.00 42.83 3.61
2325 2947 0.248498 TTCCGCTCGCGATCTACAAG 60.248 55.000 10.36 0.00 42.83 3.16
2326 2948 0.248498 CTTCCGCTCGCGATCTACAA 60.248 55.000 10.36 0.00 42.83 2.41
2327 2949 1.355563 CTTCCGCTCGCGATCTACA 59.644 57.895 10.36 0.00 42.83 2.74
2328 2950 2.011881 GCTTCCGCTCGCGATCTAC 61.012 63.158 10.36 0.00 42.83 2.59
2329 2951 2.331805 GCTTCCGCTCGCGATCTA 59.668 61.111 10.36 0.00 42.83 1.98
2347 2969 2.159707 CGTCATCCACGTTCATTGGAAC 60.160 50.000 0.00 0.00 46.37 3.62
2348 2970 2.073056 CGTCATCCACGTTCATTGGAA 58.927 47.619 0.00 0.00 46.37 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.