>input_sequence_82374
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----------------------------------------ATGG------CGCGTTCTTCCTCCCTCGCTCTCGCGGTGG
CGGTGCTGGCAATCGTCTGCTGTTTCATGCCACGCTCAGCGACGGCAATCCGAGG------TATATACAACTCCCCAGTA
ATTAATCTCGGCAACTCGATGGCCCGAATGATGTTTGATTCATCATCTATA----------------TGTGTGTGTGTGT
AGTTGTTCCCGACGGACTCCATGGGCCACTAAATTCCCCTCCGTCGCCGCGTGCCAATTATTCGCCG------CATGGGG
GACCCTACACGGGACGGCCGTGCAAGCCCTATTATGGCTGCAGAACGGTTCCTGAACCACCTCCACCGGCGACATCCCCG
CCGACTCCACGCCGCAAGACCATGCAAGTTGTGGCGAACACATGA-----------------------------------
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>chr3D_1_TraesCS3D01G000900
CGTTGGATCTGGATCACATGAGGGAGTGACCTAGGGTTCATTTCTACTCATCTAAAGTATGTAATTAACTAATCCAACCC
AAATTAAATAACCGGAGCTTACTTTTTAAAATTCAAGCATAACTACCCCTTGAAAATATATTAACCATGCCTTTCATCAC
TCTCCTTATGAATGATATTTTCTTCTTGGACTAGGTTGGGCTTATACGTGGCCATGGGCAGCCCGGCCTCGTCGGCCCGA
CCCGACCTGGCCCGACGCTCCTCACGGGCCGGGCCTGGGCCTAGATATTGAGCCCAAAGGCCGGTTTGGGCCGGGCCCGG
GCCCATAATATTTGCGAGTTAACGAATAGGCCCGGCCTGAGGCCCGACGGGTTTTTACGTTGCCAGGCCAGGCTAGGGGC
TGATTTCTAGGCCCGACGCCCGGGCCGGGCCGGGCCTAGGATTTCTGCATCGGGTTTGGTCAGGCCCGACCCAAAGCCCG
GCCCAGCCCGAGGGATGGCCAGGTATGGTGCTAAAGACACACGCGCACACACACACACACACACACACACACACACACAC
AAATATAGATGCGATGAATCAAACATCATTCTTCTATCCTTGACAAGTTGGTAATGGTCGATATTTTCTTCGGAGGTGCA
ATGCAGTGGCAGCTTACTGGAAATTCCACGCAGCTTCTTCATATGACATGACTGGACTGTATTATGTTGGCAATCACACT
CGAATCAGTAGAGACTGCTGCAGGAGGTTGAATCGGCACTAAATGGAAATTCTCGGAGAAGGACATGCACATCTTGGAAT
AGTCACAGTGCTGCCAAAATGTGTGTCGACGGCTGCTGCATGACAGGTCTATAAAGGAGAAGCAGAATTTTCAAAGATGC
CTGGTCTATTCATTGACGAACGGAAGACTTTGACCATGGACCAAAAGGAAGCCCTATAATAACGCCTGCACAAAGAGAAG
AGGACAGCGTATGCAGTGGGAAGCTGGCTACATGACGATCATGG------CGCGTTCTTCCTCCCTCGCTCTCGCGGTGG
CGGTGCTGGCAATCGTCTGCTGTTTCATGCCACGCTCAGCGACGGCAATCCGAGG------TATATACAACTCCCCAGTA
ATTAATCTCGGCAACTCGATGGCCCGAATGATGTTTGATTCATCATCTATA----------------TGTGTGTGTGTGT
AGTTGTTCCCGACGGACTCCATGGGCCACTAAATTCCCCTCCGTCGCCGCGTGCCAATTATTCGCCG------CATGGGG
GACCCTACACGGGACGGCCGTGCAAGCCCTATTATGGCTGCAGAACGGTTCCTGAACCACCTCCACCGGCGACATCCCCG
CCGACTCCACGCCGCAAGACCATGCAAGTTGTGGCGAACACATGAATCACCGTTATAT----GCAGCGATGGCGACGTTG
CGATATGATTACGAGTTCTAGAATTA-TTTTATGTGGCAACGATCGAGCTGATTGATGTGGTTGACGCCACGATTCAGTG
GAAGTTGACGCCGGATGCATGCATGCTACACAAAGAAAAATAGCTGTGTAATAAATA------TTTTGCAACCACACTAA
TATACGTGGCGATGACAAACTTTTGCTGAGG-AAGTTCACTCAAAAAAATATGTCTTGTAAACTAGCAAACCAGGGGAAT
TATAGTGTTTATTCGCTGCCCAACTGCATGATTGAGATATTGTTGACTCGTGTTGGTCGTACATGTACAAGACGAAAAAG
GGTGTCCTTTTTGCTGTTAACCCAATGATAGACTTTGACCGTTAAATTTGAACGCGTCTCCAAGACAAGGAATTATCATA
GGACTTAATTAGAACATCTACAGCCGCGATGACCAAATCTGGCCCCTCAAACGCGCCCAGAGGCGTGGGCACGTCAGCGG
GCACTAACTGGGCATGCCTCATATTTGCCACTCTGCATCCGTGTATCTCATATCCGGCGCTTCAGATCCAAACTACACAT
GCAACGTTCATCTACTCTACGTGAACAAACGACGGATAACAAAAATCGGCTGCAAAGGAACACAAGATCGGCTCAAAACA
AACATTAACAAACTTCGCCACATCCAAAAGATCATCGTTCATCACCGGACAAGTTCTTAAACTTGTACAACTAGAAACGA
TATAAACATTGACGAGTGGGGGTGGGGGG---------------------------------------------------
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--------------------------------------------GAGGGGTGGGGAGCGGGAACACCACTTCCTTGCCGG
GCCTTTGCCCTTCCGGTCACCGGCGCAGCCGTACGCGTACGCGGCTGTGTTGGGATCGTAGCATAATTTTAAAATTTTCC
TACGCTCACCAAGATGCATCTATGGAGTCTACTAGCAACGAGGGAAAAGGAGTGCATCTACATACCCTTGTAGATCGCGA
GCGGAAGCGTTCCAATGAACGTGGATGACGGA
>chr3B_60
-----------------------------------------------------------TGTAATTAAGTAATCCAACCC
AAGTTAAATAACCGGAGCTTACTTTTTAAAATTCAAGCGTAACTACCTCTTGAAAATATATCAACCATGCCTTTCATCAC
TCTCCTTATGAATGATATTTTCTTCTGGGACTAGGTTGGGCTTCTACCTGGCCATGGGCAGCCCGGCCCGGTCGGCACGA
CCCGACCTGCCCCGACGCTGCTCACGGGCTAGGCCTGGACCTAGATATTGAGCCCAAAGACCGGGCTGGGCC-GGGCCGG
GCCTGTAATATTTGCGAGTTAACAAATAGGCCCATCCCA------------------------------AGGCTTCGGCC
TGATTTCTAGGCCCGGCGCCCGGGCCTGG----GCCTGGGATTTCTGCGTCGGGCTTGGTCAGGCCTGGCCCAAAGCCCG
GTCCGGCCCGAGGGGTGGCCAGGTATGGTGCTAAGGGG--------------------------------ACACACACAC
ACACATAGATGCGATGAATCAAACATCATTCTTCTATCCTTGACAAGTTGGTAATGGTCGATATTTTCTTCGGAGGTGCA
ATGCAGTGGCAGCTTACTGGAAATTCCACGCAGCTTCTTCATATGACATGACTGGACTGTATTGCGTTGGCAATCACACT
CGAATCAGTAGAGACTGCCGCAGGAGGTTGAATCG-------------------------------GCACATCTTGGAAT
AGTCACAGTGGTGCCAAAATGTGTGTCGACGGCTGCTGCATGACAGGTATATAAAGGAGAAGCAGAATTTTCAAAGATGC
TTGGTCTATTGATTGACGAACGGAAGACTTTGACCATGGACCGGAAGGAAGCCCTATAATAACGCCTGCACAAAGAGAAG
AGGGCAGCGTATGCAGTGAGAAGCTGGCTACGTGAGGATCATGGCGCTGGCGCGTCCTTCCTCCCTCGTTCTCGCGGTGG
CGGTGCTGGCAATCATCTGCTGTTTCACGCCACGCTCAACGACGGCAATCCGAGGTATATATATATACAACTCCCCAGTA
ATTAATCTCGGCAACTCGATGGCCGGAATGATGTTTGATTCATCGCATCTACGCATATGTGTGTGTGTGTGTGTGTGTGC
AGTTGTTCCCGACGGACTCCATGGGCTACTAAATTCCCCTCCGTCGCCGCGTCCCAATTATTCGCCGCATGCGCATGGGG
AACCCTACACGGGACGGCCGTGCAGGCAAATTTATGGCTGCAGAACGGTTCCTGAACCACCTCCACAGGGGACATCCCCG
CCGACTCCACGCCGCAAGACCATGCAAGTTGTGGCCAACACATGAATCACCGTTATATATCTGCAGCGATGGCGACGTTG
CGATATGATTACGAGTTCTAGAATTATTTTTATGTGGCAACGATCGAGCTGATTGATGTGGTTGCTGCCACGATTCAGTG
CAAGTTGACGCCGGATGCATGCATGCTACACAAAGAAAAATAGCTGTGTAATAAATAGTACTATTTTGCAACCACACTAA
TATATGTGGCGATGGCAAACTTTTGCTGAGGAAAGTTCACTGAAAAAAATATGTCTTGTAAACTAGCAAACCCGGGGAAC
TATATTGTTTATTGGCTGACCAACTGCATGATTGAGATATTGTTGACTCGTGTTGGTCTTATATGTACAAGACGAAAAAG
GGTGTCCTTTTTGCTGTTAACCCAATGGTAGACTTTGACCGTCACATTTGAACGCGTCTCCAACACAAGGAATTATAATA
GGACTT--------------------------------------------------------------------------
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>chr2B_1803
TTAGAG--------------------------------------------------------------------------
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--------------CATCTACAGCCGTGATGGGCAAATCCAGCCCCTCAAACGTGTGCGGATGCGTCTGT--------GG
GCACTGACCGGGCAGGCCTCATATGTGCCACTCTGCATACGCATAACTCATATCCGGCGCCTTATATCCATACTACACAT
GCAACGTTGATCTACTCTACGTGATCAGACGACGGACAACAAAAATCGGCTGCAAAGGAACACAAGATCGGTTGCAAACG
GGCATTAACAAGCTTCGCCACATCCAAAAGATCATAGTTCATCATCGGACAAGTTCTTAAACTTCTACAATTAAAAACGA
TATAAACATTGACGAGGGGAGGGGGGCGGAATCACCGCTTCCTCGCCGGGCCTTTGTCCTTCCGGTCGTCGGCGCAGCTG
TAGGCAGTAGCGAATCTACCAGGACATATAATCCGGTCATTTTTTCCTTTTATCTTCTTCACTTTCTTTTTCCAGACATA
CCTTTTTGGTGTGTTGGGCCCTTGGCAAACCGCGACAGCAAATTGAGCCCCAACTCCTTAAATCCCTAGACTCCGAAGGC
CCATTTTGCAAGTAACCCATGGCGCCGGTTGTCGTGGTTTTAAAATCTTAGAGCATCTACAGCCATGATGGGCAAATCCA
GCCCCTCAAACGCGTGCGGATGCGTCTGTGGGCACTGACCGGGCAGGCCTCATATGTGCCACTCTGCATACGCATAACTC
ATATCCGGCGCCTTATATCCATACTACACATGCAACGTTGATCTACTCTACGTGATCAGACGACGGACAACAAAAATCGG
CTGCAAAGGAACACAAGATCGGTTGCAAACGGACATTAACAAGCTTCGCCACATCCAAAAGATCATAGTTCATCATCGGA
CAAGTTCTTAAACTTCTACAATTAAAAACGATATAAACATTGACGAGGGGAGGGGGGCGGAATCACCGCTTCCTCGCCGG
GCCTTTGTCCTTCCGGTCGTCGGCGCAGCTGTAGGCAGTAGCG-------------------------------------
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>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------
--S-----------------------------------S--------S-------------S------------------
--------------------------S----------------S---S--------------------SS------S---
---------S---------S---------SS-------S--------------------S----SS------S--S----
---SS------------------S---------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS--S-
---------------S----------S--SSSS----S----------S-----S-----------S-S-----------
-S--S---------S-------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-S-S----------------------------------------------------------------------------
---------------------------------------------------------------SS---------------
------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----------S-------------------------------------S-------------------------------
S---------S-------------------------------SS------------------------------------
---S--------------S------------S---S-------------------S------------S-----------
--------------S------------S----------S-----------------------------------------
------------------------S-------------------SSS-S------------------------------S
--------------------------S-------------------------S---------------------------
S-----------------------S--SSSS-----------------------------------S--S----------
-----------------------------------S--------------------------------------------
----------------------------------------------------------------SS--------------
S-------------------------------------------------------------------------------
----S---------S--------------------------S------------------------------S------S
----S--------S----S---------------------------------------S--S------------------
---------------------------S--------------S-S------------------S------------S---
------SSSSSSSS------------S----SS------SS------------S-SS-S--S----SS-SSSSSSSSS--
-----S--S-----S---------S-------------S--SS--S--------------S-S-S-----S---------
--------S---------------S--S--------S----------------------------------S-SS----S
SS---------S-----------------------S--------S-------------------S-----S--S------
----------------S--S--S---S-----------------------------------------------------
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--------------------------------------------------S----S----S-S----S------S-----
-------S----------SS---------S---S--SSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_760
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--------------------CAGGAGGTTGAATCGGCACT----------------------------------------
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>reverse_2879
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------------------------------------------------------------------------------CC
TACGCTCACCAAGATGCA--------------------------------------------------------------
--------------------------------
