Multiple sequence alignment - TraesCS3D01G000200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G000200 chr3D 100.000 2624 0 0 1 2624 327329 329952 0.000000e+00 4846
1 TraesCS3D01G000200 chr3D 86.861 137 13 4 1883 2019 124503839 124503970 5.850000e-32 148
2 TraesCS3D01G000200 chr3B 92.704 1302 68 12 553 1841 6179148 6177861 0.000000e+00 1853
3 TraesCS3D01G000200 chr3A 91.209 1365 87 20 551 1907 9281567 9280228 0.000000e+00 1825
4 TraesCS3D01G000200 chr3A 89.662 503 36 3 1145 1644 9276070 9275581 6.170000e-176 627
5 TraesCS3D01G000200 chr3A 90.985 477 23 4 2016 2492 9279760 9279304 2.220000e-175 625
6 TraesCS3D01G000200 chr3A 89.591 269 22 4 1638 1906 9280010 9279748 1.160000e-88 337
7 TraesCS3D01G000200 chr3A 86.738 279 27 8 1631 1906 9218694 9218423 4.240000e-78 302
8 TraesCS3D01G000200 chr3A 85.816 282 22 9 1639 1906 9274459 9274182 1.540000e-72 283
9 TraesCS3D01G000200 chr3A 95.556 90 4 0 2535 2624 9218936 9218847 7.570000e-31 145
10 TraesCS3D01G000200 chr3A 88.991 109 11 1 2384 2492 9272046 9271939 1.640000e-27 134
11 TraesCS3D01G000200 chr4A 91.406 128 10 1 1895 2022 162161207 162161081 9.650000e-40 174
12 TraesCS3D01G000200 chr4A 94.595 111 6 0 1909 2019 67164891 67165001 3.470000e-39 172
13 TraesCS3D01G000200 chr2A 93.220 118 8 0 1905 2022 759029732 759029615 9.650000e-40 174
14 TraesCS3D01G000200 chr2A 93.103 116 7 1 1904 2019 763983276 763983390 4.490000e-38 169
15 TraesCS3D01G000200 chr2A 90.164 122 10 2 1899 2019 635717903 635717783 9.720000e-35 158
16 TraesCS3D01G000200 chr5A 93.220 118 6 2 1902 2019 548690351 548690466 3.470000e-39 172
17 TraesCS3D01G000200 chr5B 93.694 111 7 0 1909 2019 476789877 476789987 1.620000e-37 167
18 TraesCS3D01G000200 chr1D 93.694 111 6 1 1909 2019 483237715 483237824 5.810000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G000200 chr3D 327329 329952 2623 False 4846.0 4846 100.000000 1 2624 1 chr3D.!!$F1 2623
1 TraesCS3D01G000200 chr3B 6177861 6179148 1287 True 1853.0 1853 92.704000 553 1841 1 chr3B.!!$R1 1288
2 TraesCS3D01G000200 chr3A 9271939 9281567 9628 True 638.5 1825 89.375667 551 2492 6 chr3A.!!$R2 1941
3 TraesCS3D01G000200 chr3A 9218423 9218936 513 True 223.5 302 91.147000 1631 2624 2 chr3A.!!$R1 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 442 0.034059 GATCGGGCTACTCCATGGTG 59.966 60.0 12.58 12.42 36.21 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2511 0.034059 ACAAGCAGTTGTCTCTCGGG 59.966 55.0 0.0 0.0 43.88 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.906660 GGATGTCACGTGTCCTTCA 57.093 52.632 16.51 8.71 0.00 3.02
19 20 1.429463 GGATGTCACGTGTCCTTCAC 58.571 55.000 16.51 5.62 43.03 3.18
20 21 1.000955 GGATGTCACGTGTCCTTCACT 59.999 52.381 16.51 0.00 44.16 3.41
21 22 2.548067 GGATGTCACGTGTCCTTCACTT 60.548 50.000 16.51 3.19 44.16 3.16
23 24 2.276201 TGTCACGTGTCCTTCACTTTG 58.724 47.619 16.51 0.00 44.16 2.77
24 25 1.003866 GTCACGTGTCCTTCACTTTGC 60.004 52.381 16.51 0.00 44.16 3.68
25 26 0.307760 CACGTGTCCTTCACTTTGCC 59.692 55.000 7.58 0.00 44.16 4.52
27 28 1.414919 ACGTGTCCTTCACTTTGCCTA 59.585 47.619 0.00 0.00 44.16 3.93
28 29 2.038557 ACGTGTCCTTCACTTTGCCTAT 59.961 45.455 0.00 0.00 44.16 2.57
30 31 3.674997 GTGTCCTTCACTTTGCCTATCA 58.325 45.455 0.00 0.00 43.13 2.15
33 34 5.183904 GTGTCCTTCACTTTGCCTATCAATT 59.816 40.000 0.00 0.00 43.13 2.32
34 35 5.774690 TGTCCTTCACTTTGCCTATCAATTT 59.225 36.000 0.00 0.00 34.12 1.82
35 36 6.267471 TGTCCTTCACTTTGCCTATCAATTTT 59.733 34.615 0.00 0.00 34.12 1.82
36 37 6.808704 GTCCTTCACTTTGCCTATCAATTTTC 59.191 38.462 0.00 0.00 34.12 2.29
37 38 6.493115 TCCTTCACTTTGCCTATCAATTTTCA 59.507 34.615 0.00 0.00 34.12 2.69
38 39 7.015098 TCCTTCACTTTGCCTATCAATTTTCAA 59.985 33.333 0.00 0.00 34.12 2.69
39 40 7.820872 CCTTCACTTTGCCTATCAATTTTCAAT 59.179 33.333 0.00 0.00 34.12 2.57
40 41 8.537049 TTCACTTTGCCTATCAATTTTCAATG 57.463 30.769 0.00 0.00 34.12 2.82
42 43 5.876460 ACTTTGCCTATCAATTTTCAATGCC 59.124 36.000 0.00 0.00 34.12 4.40
44 45 5.013568 TGCCTATCAATTTTCAATGCCAG 57.986 39.130 0.00 0.00 0.00 4.85
45 46 3.805971 GCCTATCAATTTTCAATGCCAGC 59.194 43.478 0.00 0.00 0.00 4.85
46 47 4.374399 CCTATCAATTTTCAATGCCAGCC 58.626 43.478 0.00 0.00 0.00 4.85
48 49 3.322211 TCAATTTTCAATGCCAGCCAG 57.678 42.857 0.00 0.00 0.00 4.85
49 50 1.735571 CAATTTTCAATGCCAGCCAGC 59.264 47.619 0.00 0.00 0.00 4.85
50 51 0.108520 ATTTTCAATGCCAGCCAGCG 60.109 50.000 0.00 0.00 34.65 5.18
51 52 1.177895 TTTTCAATGCCAGCCAGCGA 61.178 50.000 0.00 0.00 34.65 4.93
52 53 0.966875 TTTCAATGCCAGCCAGCGAT 60.967 50.000 0.00 0.00 34.65 4.58
53 54 0.966875 TTCAATGCCAGCCAGCGATT 60.967 50.000 0.00 0.00 34.65 3.34
54 55 1.065273 CAATGCCAGCCAGCGATTC 59.935 57.895 0.00 0.00 34.65 2.52
55 56 2.123428 AATGCCAGCCAGCGATTCC 61.123 57.895 0.00 0.00 34.65 3.01
56 57 4.802051 TGCCAGCCAGCGATTCCC 62.802 66.667 0.00 0.00 34.65 3.97
58 59 4.161295 CCAGCCAGCGATTCCCGA 62.161 66.667 0.00 0.00 41.76 5.14
59 60 2.109799 CAGCCAGCGATTCCCGAT 59.890 61.111 0.00 0.00 41.76 4.18
60 61 1.524621 CAGCCAGCGATTCCCGATT 60.525 57.895 0.00 0.00 41.76 3.34
61 62 1.227674 AGCCAGCGATTCCCGATTC 60.228 57.895 0.00 0.00 41.76 2.52
63 64 1.067416 CCAGCGATTCCCGATTCGA 59.933 57.895 7.83 0.00 41.76 3.71
64 65 0.319900 CCAGCGATTCCCGATTCGAT 60.320 55.000 7.83 3.95 41.76 3.59
65 66 1.502231 CAGCGATTCCCGATTCGATT 58.498 50.000 7.83 0.00 41.76 3.34
66 67 1.457303 CAGCGATTCCCGATTCGATTC 59.543 52.381 7.83 0.00 41.76 2.52
67 68 0.790814 GCGATTCCCGATTCGATTCC 59.209 55.000 7.83 0.00 41.76 3.01
70 71 2.731976 CGATTCCCGATTCGATTCCTTC 59.268 50.000 7.83 0.00 41.76 3.46
71 72 4.693103 CGATTCCCGATTCGATTCCTTCG 61.693 52.174 7.83 4.92 44.68 3.79
78 79 4.208632 CGATTCCTTCGCTGCCTT 57.791 55.556 0.00 0.00 41.69 4.35
79 80 1.717937 CGATTCCTTCGCTGCCTTG 59.282 57.895 0.00 0.00 41.69 3.61
80 81 1.709147 CGATTCCTTCGCTGCCTTGG 61.709 60.000 0.00 0.00 41.69 3.61
81 82 0.678048 GATTCCTTCGCTGCCTTGGT 60.678 55.000 0.00 0.00 0.00 3.67
82 83 0.962356 ATTCCTTCGCTGCCTTGGTG 60.962 55.000 0.00 0.00 0.00 4.17
83 84 2.281761 CCTTCGCTGCCTTGGTGT 60.282 61.111 0.00 0.00 0.00 4.16
84 85 2.620112 CCTTCGCTGCCTTGGTGTG 61.620 63.158 0.00 0.00 0.00 3.82
91 92 4.025401 GCCTTGGTGTGGCGAACG 62.025 66.667 0.00 0.00 41.03 3.95
92 93 2.280524 CCTTGGTGTGGCGAACGA 60.281 61.111 0.00 0.00 0.00 3.85
93 94 2.604174 CCTTGGTGTGGCGAACGAC 61.604 63.158 0.00 0.00 0.00 4.34
94 95 2.589442 TTGGTGTGGCGAACGACC 60.589 61.111 0.00 0.00 33.20 4.79
96 97 2.737376 GGTGTGGCGAACGACCTC 60.737 66.667 0.00 1.04 31.18 3.85
121 122 4.166011 GCGGCTGAACGGCATGAC 62.166 66.667 0.00 0.00 43.73 3.06
122 123 3.853330 CGGCTGAACGGCATGACG 61.853 66.667 21.98 21.98 38.27 4.35
123 124 2.434185 GGCTGAACGGCATGACGA 60.434 61.111 31.27 3.80 38.25 4.20
124 125 2.032634 GGCTGAACGGCATGACGAA 61.033 57.895 31.27 11.86 38.25 3.85
125 126 1.573829 GGCTGAACGGCATGACGAAA 61.574 55.000 31.27 11.46 38.25 3.46
126 127 0.452784 GCTGAACGGCATGACGAAAC 60.453 55.000 31.27 17.91 37.61 2.78
128 129 2.333926 CTGAACGGCATGACGAAACTA 58.666 47.619 31.27 7.94 37.61 2.24
131 132 3.057386 TGAACGGCATGACGAAACTACTA 60.057 43.478 31.27 1.52 37.61 1.82
132 133 2.872370 ACGGCATGACGAAACTACTAC 58.128 47.619 31.27 0.00 37.61 2.73
133 134 2.190981 CGGCATGACGAAACTACTACC 58.809 52.381 18.41 0.00 35.47 3.18
134 135 2.159282 CGGCATGACGAAACTACTACCT 60.159 50.000 18.41 0.00 35.47 3.08
135 136 3.445857 GGCATGACGAAACTACTACCTC 58.554 50.000 0.00 0.00 0.00 3.85
137 138 4.352887 GCATGACGAAACTACTACCTCTC 58.647 47.826 0.00 0.00 0.00 3.20
138 139 4.142447 GCATGACGAAACTACTACCTCTCA 60.142 45.833 0.00 0.00 0.00 3.27
139 140 5.450688 GCATGACGAAACTACTACCTCTCAT 60.451 44.000 0.00 0.00 0.00 2.90
141 142 4.639310 TGACGAAACTACTACCTCTCATCC 59.361 45.833 0.00 0.00 0.00 3.51
142 143 4.597004 ACGAAACTACTACCTCTCATCCA 58.403 43.478 0.00 0.00 0.00 3.41
143 144 5.014858 ACGAAACTACTACCTCTCATCCAA 58.985 41.667 0.00 0.00 0.00 3.53
144 145 5.125739 ACGAAACTACTACCTCTCATCCAAG 59.874 44.000 0.00 0.00 0.00 3.61
145 146 5.450688 CGAAACTACTACCTCTCATCCAAGG 60.451 48.000 0.00 0.00 38.70 3.61
146 147 3.301274 ACTACTACCTCTCATCCAAGGC 58.699 50.000 0.00 0.00 36.01 4.35
147 148 1.501582 ACTACCTCTCATCCAAGGCC 58.498 55.000 0.00 0.00 36.01 5.19
148 149 1.273838 ACTACCTCTCATCCAAGGCCA 60.274 52.381 5.01 0.00 36.01 5.36
149 150 1.139853 CTACCTCTCATCCAAGGCCAC 59.860 57.143 5.01 0.00 36.01 5.01
151 152 0.393537 CCTCTCATCCAAGGCCACAC 60.394 60.000 5.01 0.00 0.00 3.82
152 153 0.393537 CTCTCATCCAAGGCCACACC 60.394 60.000 5.01 0.00 39.61 4.16
153 154 1.746615 CTCATCCAAGGCCACACCG 60.747 63.158 5.01 0.00 46.52 4.94
154 155 2.184020 CTCATCCAAGGCCACACCGA 62.184 60.000 5.01 0.00 46.52 4.69
156 157 1.002134 ATCCAAGGCCACACCGAAG 60.002 57.895 5.01 0.00 46.52 3.79
171 172 0.598680 CGAAGGATCTCATCACCGGC 60.599 60.000 0.00 0.00 0.00 6.13
172 173 0.598680 GAAGGATCTCATCACCGGCG 60.599 60.000 0.00 0.00 0.00 6.46
173 174 2.029666 GGATCTCATCACCGGCGG 59.970 66.667 27.06 27.06 0.00 6.13
174 175 2.663188 GATCTCATCACCGGCGGC 60.663 66.667 28.71 1.51 0.00 6.53
175 176 4.241555 ATCTCATCACCGGCGGCC 62.242 66.667 28.71 9.54 0.00 6.13
189 190 2.528743 CGGCCACGAGACATGATGC 61.529 63.158 2.24 0.00 44.60 3.91
191 192 1.434622 GGCCACGAGACATGATGCTG 61.435 60.000 0.00 0.00 0.00 4.41
192 193 0.742281 GCCACGAGACATGATGCTGT 60.742 55.000 0.00 0.00 0.00 4.40
193 194 1.004595 CCACGAGACATGATGCTGTG 58.995 55.000 0.00 1.35 0.00 3.66
195 196 1.657594 CACGAGACATGATGCTGTGAC 59.342 52.381 0.00 0.00 0.00 3.67
198 199 2.093310 CGAGACATGATGCTGTGACAAC 59.907 50.000 0.00 0.00 0.00 3.32
199 200 3.332919 GAGACATGATGCTGTGACAACT 58.667 45.455 0.00 0.00 0.00 3.16
200 201 3.748083 AGACATGATGCTGTGACAACTT 58.252 40.909 0.00 0.00 0.00 2.66
201 202 3.750130 AGACATGATGCTGTGACAACTTC 59.250 43.478 0.00 0.00 0.00 3.01
202 203 3.748083 ACATGATGCTGTGACAACTTCT 58.252 40.909 0.00 0.00 0.00 2.85
203 204 3.750130 ACATGATGCTGTGACAACTTCTC 59.250 43.478 0.00 0.00 0.00 2.87
204 205 2.407090 TGATGCTGTGACAACTTCTCG 58.593 47.619 3.98 0.00 0.00 4.04
206 207 1.852942 TGCTGTGACAACTTCTCGTC 58.147 50.000 0.00 0.00 0.00 4.20
207 208 1.409064 TGCTGTGACAACTTCTCGTCT 59.591 47.619 0.00 0.00 33.18 4.18
208 209 2.621526 TGCTGTGACAACTTCTCGTCTA 59.378 45.455 0.00 0.00 33.18 2.59
209 210 3.255888 TGCTGTGACAACTTCTCGTCTAT 59.744 43.478 0.00 0.00 33.18 1.98
210 211 4.457949 TGCTGTGACAACTTCTCGTCTATA 59.542 41.667 0.00 0.00 33.18 1.31
211 212 5.125578 TGCTGTGACAACTTCTCGTCTATAT 59.874 40.000 0.00 0.00 33.18 0.86
212 213 6.037098 GCTGTGACAACTTCTCGTCTATATT 58.963 40.000 0.00 0.00 33.18 1.28
213 214 6.197468 GCTGTGACAACTTCTCGTCTATATTC 59.803 42.308 0.00 0.00 33.18 1.75
216 217 6.194876 GTGACAACTTCTCGTCTATATTCACG 59.805 42.308 0.75 0.75 37.36 4.35
217 218 5.035443 ACAACTTCTCGTCTATATTCACGC 58.965 41.667 2.09 0.00 35.93 5.34
218 219 4.226113 ACTTCTCGTCTATATTCACGCC 57.774 45.455 2.09 0.00 35.93 5.68
219 220 2.963498 TCTCGTCTATATTCACGCCG 57.037 50.000 2.09 0.00 35.93 6.46
220 221 1.534163 TCTCGTCTATATTCACGCCGG 59.466 52.381 0.00 0.00 35.93 6.13
221 222 1.534163 CTCGTCTATATTCACGCCGGA 59.466 52.381 5.05 0.00 35.93 5.14
222 223 1.534163 TCGTCTATATTCACGCCGGAG 59.466 52.381 5.05 3.72 35.93 4.63
236 237 2.434359 GGAGGACTTCGTTGGCGG 60.434 66.667 0.00 0.00 38.89 6.13
241 242 3.573489 GACTTCGTTGGCGGCGTTG 62.573 63.158 9.37 0.00 38.89 4.10
246 247 4.683334 GTTGGCGGCGTTGCTGAC 62.683 66.667 9.37 0.00 44.51 3.51
252 253 3.112709 GGCGTTGCTGACCGACTC 61.113 66.667 0.00 0.00 0.00 3.36
253 254 3.112709 GCGTTGCTGACCGACTCC 61.113 66.667 0.00 0.00 0.00 3.85
254 255 2.338620 CGTTGCTGACCGACTCCA 59.661 61.111 0.00 0.00 0.00 3.86
255 256 2.022129 CGTTGCTGACCGACTCCAC 61.022 63.158 0.00 0.00 0.00 4.02
256 257 2.022129 GTTGCTGACCGACTCCACG 61.022 63.158 0.00 0.00 0.00 4.94
257 258 2.495409 TTGCTGACCGACTCCACGT 61.495 57.895 0.00 0.00 0.00 4.49
258 259 2.023414 TTGCTGACCGACTCCACGTT 62.023 55.000 0.00 0.00 0.00 3.99
259 260 1.733399 GCTGACCGACTCCACGTTC 60.733 63.158 0.00 0.00 0.00 3.95
260 261 1.658114 CTGACCGACTCCACGTTCA 59.342 57.895 0.00 0.00 34.05 3.18
261 262 0.243907 CTGACCGACTCCACGTTCAT 59.756 55.000 0.00 0.00 34.61 2.57
262 263 0.242825 TGACCGACTCCACGTTCATC 59.757 55.000 0.00 0.00 30.58 2.92
263 264 0.526662 GACCGACTCCACGTTCATCT 59.473 55.000 0.00 0.00 0.00 2.90
264 265 0.966920 ACCGACTCCACGTTCATCTT 59.033 50.000 0.00 0.00 0.00 2.40
265 266 1.336887 ACCGACTCCACGTTCATCTTG 60.337 52.381 0.00 0.00 0.00 3.02
266 267 1.350193 CGACTCCACGTTCATCTTGG 58.650 55.000 0.00 0.00 36.88 3.61
267 268 1.079503 GACTCCACGTTCATCTTGGC 58.920 55.000 0.00 0.00 35.71 4.52
268 269 0.396435 ACTCCACGTTCATCTTGGCA 59.604 50.000 0.00 0.00 35.71 4.92
269 270 1.081892 CTCCACGTTCATCTTGGCAG 58.918 55.000 0.00 0.00 35.71 4.85
270 271 0.396435 TCCACGTTCATCTTGGCAGT 59.604 50.000 0.00 0.00 35.71 4.40
271 272 1.621317 TCCACGTTCATCTTGGCAGTA 59.379 47.619 0.00 0.00 35.71 2.74
272 273 1.732259 CCACGTTCATCTTGGCAGTAC 59.268 52.381 0.00 0.00 0.00 2.73
273 274 1.390123 CACGTTCATCTTGGCAGTACG 59.610 52.381 2.88 2.88 0.00 3.67
274 275 0.370273 CGTTCATCTTGGCAGTACGC 59.630 55.000 1.72 1.72 41.28 4.42
283 284 2.432628 GCAGTACGCCAAGACGCT 60.433 61.111 0.00 0.00 36.19 5.07
284 285 2.730672 GCAGTACGCCAAGACGCTG 61.731 63.158 0.00 0.00 36.19 5.18
285 286 1.372997 CAGTACGCCAAGACGCTGT 60.373 57.895 0.00 0.00 36.19 4.40
286 287 0.944311 CAGTACGCCAAGACGCTGTT 60.944 55.000 0.00 0.00 36.19 3.16
287 288 0.944311 AGTACGCCAAGACGCTGTTG 60.944 55.000 0.00 0.00 36.19 3.33
288 289 1.666553 TACGCCAAGACGCTGTTGG 60.667 57.895 6.65 6.65 46.36 3.77
307 308 4.875713 GATGGCCGGGCGGATTGT 62.876 66.667 24.45 4.51 37.50 2.71
308 309 4.875713 ATGGCCGGGCGGATTGTC 62.876 66.667 24.45 0.00 37.50 3.18
311 312 3.810896 GCCGGGCGGATTGTCAAC 61.811 66.667 1.81 0.00 37.50 3.18
312 313 3.496131 CCGGGCGGATTGTCAACG 61.496 66.667 0.00 0.00 37.50 4.10
313 314 3.496131 CGGGCGGATTGTCAACGG 61.496 66.667 0.00 0.00 0.00 4.44
315 316 4.160635 GGCGGATTGTCAACGGCG 62.161 66.667 4.80 4.80 43.01 6.46
316 317 4.160635 GCGGATTGTCAACGGCGG 62.161 66.667 13.24 0.00 0.00 6.13
317 318 4.160635 CGGATTGTCAACGGCGGC 62.161 66.667 13.24 0.00 0.00 6.53
318 319 3.053291 GGATTGTCAACGGCGGCA 61.053 61.111 13.24 1.35 0.00 5.69
319 320 2.622011 GGATTGTCAACGGCGGCAA 61.622 57.895 13.24 11.13 0.00 4.52
320 321 1.442017 GATTGTCAACGGCGGCAAC 60.442 57.895 13.24 6.34 0.00 4.17
332 333 2.357034 GGCAACGAGGCAAGACGA 60.357 61.111 0.00 0.00 43.51 4.20
333 334 2.668280 GGCAACGAGGCAAGACGAC 61.668 63.158 0.00 0.00 43.51 4.34
334 335 1.664965 GCAACGAGGCAAGACGACT 60.665 57.895 0.00 0.00 32.98 4.18
339 340 3.129792 GAGGCAAGACGACTCCTTG 57.870 57.895 0.00 0.00 45.06 3.61
340 341 0.603569 GAGGCAAGACGACTCCTTGA 59.396 55.000 7.02 0.00 45.06 3.02
341 342 1.205893 GAGGCAAGACGACTCCTTGAT 59.794 52.381 7.02 0.00 45.06 2.57
342 343 1.205893 AGGCAAGACGACTCCTTGATC 59.794 52.381 7.02 0.00 42.57 2.92
343 344 1.066858 GGCAAGACGACTCCTTGATCA 60.067 52.381 7.02 0.00 42.57 2.92
344 345 2.419297 GGCAAGACGACTCCTTGATCAT 60.419 50.000 0.00 0.00 42.57 2.45
345 346 2.606725 GCAAGACGACTCCTTGATCATG 59.393 50.000 0.00 0.00 42.57 3.07
346 347 3.193263 CAAGACGACTCCTTGATCATGG 58.807 50.000 19.32 19.32 42.57 3.66
347 348 1.137872 AGACGACTCCTTGATCATGGC 59.862 52.381 20.32 7.93 0.00 4.40
348 349 0.179100 ACGACTCCTTGATCATGGCG 60.179 55.000 20.32 19.19 0.00 5.69
349 350 0.877649 CGACTCCTTGATCATGGCGG 60.878 60.000 20.32 16.91 0.00 6.13
350 351 0.465705 GACTCCTTGATCATGGCGGA 59.534 55.000 20.32 11.70 0.00 5.54
351 352 0.911769 ACTCCTTGATCATGGCGGAA 59.088 50.000 20.32 4.94 0.00 4.30
352 353 1.134280 ACTCCTTGATCATGGCGGAAG 60.134 52.381 20.32 15.08 0.00 3.46
364 365 4.697756 CGGAAGCGGGCCAAGACA 62.698 66.667 4.39 0.00 0.00 3.41
365 366 2.747855 GGAAGCGGGCCAAGACAG 60.748 66.667 4.39 0.00 0.00 3.51
366 367 2.032681 GAAGCGGGCCAAGACAGT 59.967 61.111 4.39 0.00 0.00 3.55
367 368 2.032681 AAGCGGGCCAAGACAGTC 59.967 61.111 4.39 0.00 0.00 3.51
368 369 2.731691 GAAGCGGGCCAAGACAGTCA 62.732 60.000 4.39 0.00 0.00 3.41
369 370 2.045926 GCGGGCCAAGACAGTCAT 60.046 61.111 4.39 0.00 0.00 3.06
370 371 2.401766 GCGGGCCAAGACAGTCATG 61.402 63.158 4.39 0.33 0.00 3.07
371 372 1.003355 CGGGCCAAGACAGTCATGT 60.003 57.895 4.39 0.00 44.31 3.21
381 382 0.108615 ACAGTCATGTCACTAGCGGC 60.109 55.000 0.00 0.00 32.99 6.53
382 383 0.807667 CAGTCATGTCACTAGCGGCC 60.808 60.000 0.00 0.00 0.00 6.13
383 384 1.878522 GTCATGTCACTAGCGGCCG 60.879 63.158 24.05 24.05 0.00 6.13
384 385 2.049767 TCATGTCACTAGCGGCCGA 61.050 57.895 33.48 8.14 0.00 5.54
385 386 1.153647 CATGTCACTAGCGGCCGAA 60.154 57.895 33.48 15.61 0.00 4.30
386 387 1.153628 ATGTCACTAGCGGCCGAAC 60.154 57.895 33.48 12.91 0.00 3.95
387 388 2.508663 GTCACTAGCGGCCGAACC 60.509 66.667 33.48 12.00 0.00 3.62
388 389 2.678934 TCACTAGCGGCCGAACCT 60.679 61.111 33.48 19.66 35.61 3.50
389 390 2.509336 CACTAGCGGCCGAACCTG 60.509 66.667 33.48 14.23 35.61 4.00
390 391 4.452733 ACTAGCGGCCGAACCTGC 62.453 66.667 33.48 10.17 37.97 4.85
391 392 4.148825 CTAGCGGCCGAACCTGCT 62.149 66.667 33.48 18.07 45.89 4.24
392 393 2.756691 TAGCGGCCGAACCTGCTA 60.757 61.111 33.48 16.87 43.49 3.49
393 394 2.955751 CTAGCGGCCGAACCTGCTAC 62.956 65.000 33.48 7.54 43.49 3.58
394 395 4.452733 GCGGCCGAACCTGCTACT 62.453 66.667 33.48 0.00 35.76 2.57
395 396 2.264794 CGGCCGAACCTGCTACTT 59.735 61.111 24.07 0.00 35.61 2.24
396 397 2.100631 CGGCCGAACCTGCTACTTG 61.101 63.158 24.07 0.00 35.61 3.16
397 398 1.003718 GGCCGAACCTGCTACTTGT 60.004 57.895 0.00 0.00 34.51 3.16
398 399 0.605589 GGCCGAACCTGCTACTTGTT 60.606 55.000 0.00 0.00 34.51 2.83
399 400 0.517316 GCCGAACCTGCTACTTGTTG 59.483 55.000 0.00 0.00 0.00 3.33
400 401 1.876416 GCCGAACCTGCTACTTGTTGA 60.876 52.381 0.00 0.00 0.00 3.18
401 402 2.699954 CCGAACCTGCTACTTGTTGAT 58.300 47.619 0.00 0.00 0.00 2.57
402 403 2.416547 CCGAACCTGCTACTTGTTGATG 59.583 50.000 0.00 0.00 0.00 3.07
403 404 2.159653 CGAACCTGCTACTTGTTGATGC 60.160 50.000 0.00 0.00 0.00 3.91
404 405 2.867109 ACCTGCTACTTGTTGATGCT 57.133 45.000 0.00 0.00 0.00 3.79
405 406 2.430465 ACCTGCTACTTGTTGATGCTG 58.570 47.619 0.00 0.00 0.00 4.41
406 407 1.741706 CCTGCTACTTGTTGATGCTGG 59.258 52.381 0.00 0.00 36.66 4.85
407 408 1.131883 CTGCTACTTGTTGATGCTGGC 59.868 52.381 0.00 0.00 0.00 4.85
408 409 1.271543 TGCTACTTGTTGATGCTGGCT 60.272 47.619 0.00 0.00 0.00 4.75
409 410 1.815003 GCTACTTGTTGATGCTGGCTT 59.185 47.619 0.00 0.00 0.00 4.35
410 411 2.229784 GCTACTTGTTGATGCTGGCTTT 59.770 45.455 0.00 0.00 0.00 3.51
411 412 2.806608 ACTTGTTGATGCTGGCTTTG 57.193 45.000 0.00 0.00 0.00 2.77
412 413 1.269936 ACTTGTTGATGCTGGCTTTGC 60.270 47.619 0.00 0.00 0.00 3.68
413 414 0.318869 TTGTTGATGCTGGCTTTGCG 60.319 50.000 0.00 0.00 0.00 4.85
414 415 2.090524 GTTGATGCTGGCTTTGCGC 61.091 57.895 0.00 0.00 38.13 6.09
423 424 3.353836 GCTTTGCGCCAAGACCGA 61.354 61.111 24.11 0.00 0.00 4.69
424 425 2.690778 GCTTTGCGCCAAGACCGAT 61.691 57.895 24.11 0.00 0.00 4.18
425 426 1.425428 CTTTGCGCCAAGACCGATC 59.575 57.895 15.79 0.00 0.00 3.69
426 427 2.296692 CTTTGCGCCAAGACCGATCG 62.297 60.000 15.79 8.51 0.00 3.69
427 428 4.812476 TGCGCCAAGACCGATCGG 62.812 66.667 32.20 32.20 42.03 4.18
435 436 3.040844 GACCGATCGGGCTACTCC 58.959 66.667 35.87 13.01 41.04 3.85
436 437 1.826921 GACCGATCGGGCTACTCCA 60.827 63.158 35.87 0.00 41.04 3.86
437 438 1.152525 ACCGATCGGGCTACTCCAT 60.153 57.895 35.87 10.74 40.62 3.41
438 439 1.290324 CCGATCGGGCTACTCCATG 59.710 63.158 26.95 0.00 36.21 3.66
439 440 1.290324 CGATCGGGCTACTCCATGG 59.710 63.158 4.97 4.97 36.21 3.66
440 441 1.464376 CGATCGGGCTACTCCATGGT 61.464 60.000 12.58 0.00 36.21 3.55
441 442 0.034059 GATCGGGCTACTCCATGGTG 59.966 60.000 12.58 12.42 36.21 4.17
442 443 2.044806 ATCGGGCTACTCCATGGTGC 62.045 60.000 12.58 11.80 36.21 5.01
443 444 2.193248 GGGCTACTCCATGGTGCC 59.807 66.667 22.85 22.85 42.56 5.01
444 445 2.203070 GGCTACTCCATGGTGCCG 60.203 66.667 12.58 5.15 33.96 5.69
445 446 2.897350 GCTACTCCATGGTGCCGC 60.897 66.667 12.58 11.51 0.00 6.53
446 447 2.584064 CTACTCCATGGTGCCGCA 59.416 61.111 12.58 0.00 0.00 5.69
447 448 1.522355 CTACTCCATGGTGCCGCAG 60.522 63.158 12.58 2.69 0.00 5.18
448 449 2.244117 CTACTCCATGGTGCCGCAGT 62.244 60.000 12.58 9.18 0.00 4.40
449 450 1.836999 TACTCCATGGTGCCGCAGTT 61.837 55.000 12.58 0.00 0.00 3.16
450 451 1.973281 CTCCATGGTGCCGCAGTTT 60.973 57.895 12.58 0.00 0.00 2.66
451 452 0.676466 CTCCATGGTGCCGCAGTTTA 60.676 55.000 12.58 0.00 0.00 2.01
452 453 0.250945 TCCATGGTGCCGCAGTTTAA 60.251 50.000 12.58 0.00 0.00 1.52
453 454 0.817013 CCATGGTGCCGCAGTTTAAT 59.183 50.000 2.57 0.00 0.00 1.40
454 455 1.204467 CCATGGTGCCGCAGTTTAATT 59.796 47.619 2.57 0.00 0.00 1.40
455 456 2.529151 CATGGTGCCGCAGTTTAATTC 58.471 47.619 0.00 0.00 0.00 2.17
456 457 0.885196 TGGTGCCGCAGTTTAATTCC 59.115 50.000 0.00 0.00 0.00 3.01
457 458 0.885196 GGTGCCGCAGTTTAATTCCA 59.115 50.000 0.00 0.00 0.00 3.53
458 459 1.476488 GGTGCCGCAGTTTAATTCCAT 59.524 47.619 0.00 0.00 0.00 3.41
459 460 2.479560 GGTGCCGCAGTTTAATTCCATC 60.480 50.000 0.00 0.00 0.00 3.51
460 461 1.400142 TGCCGCAGTTTAATTCCATCG 59.600 47.619 0.00 0.00 0.00 3.84
461 462 1.268539 GCCGCAGTTTAATTCCATCGG 60.269 52.381 0.00 0.00 38.72 4.18
462 463 2.014128 CCGCAGTTTAATTCCATCGGT 58.986 47.619 0.00 0.00 0.00 4.69
463 464 2.223249 CCGCAGTTTAATTCCATCGGTG 60.223 50.000 0.00 0.00 0.00 4.94
498 499 3.598019 AAAATGCATCACACCATCACC 57.402 42.857 0.00 0.00 0.00 4.02
499 500 2.219080 AATGCATCACACCATCACCA 57.781 45.000 0.00 0.00 0.00 4.17
500 501 1.758936 ATGCATCACACCATCACCAG 58.241 50.000 0.00 0.00 0.00 4.00
501 502 0.961857 TGCATCACACCATCACCAGC 60.962 55.000 0.00 0.00 0.00 4.85
502 503 0.679002 GCATCACACCATCACCAGCT 60.679 55.000 0.00 0.00 0.00 4.24
503 504 1.092348 CATCACACCATCACCAGCTG 58.908 55.000 6.78 6.78 0.00 4.24
504 505 0.034767 ATCACACCATCACCAGCTGG 60.035 55.000 31.60 31.60 42.17 4.85
505 506 1.676635 CACACCATCACCAGCTGGG 60.677 63.158 35.42 23.77 44.81 4.45
506 507 1.847506 ACACCATCACCAGCTGGGA 60.848 57.895 35.42 27.79 41.15 4.37
507 508 1.377725 CACCATCACCAGCTGGGAC 60.378 63.158 35.42 0.00 41.15 4.46
508 509 1.847506 ACCATCACCAGCTGGGACA 60.848 57.895 35.42 19.37 41.15 4.02
509 510 1.377725 CCATCACCAGCTGGGACAC 60.378 63.158 35.42 0.00 41.15 3.67
510 511 1.742880 CATCACCAGCTGGGACACG 60.743 63.158 35.42 18.07 41.15 4.49
511 512 1.913262 ATCACCAGCTGGGACACGA 60.913 57.895 35.42 22.30 41.15 4.35
512 513 1.267574 ATCACCAGCTGGGACACGAT 61.268 55.000 35.42 23.38 41.15 3.73
513 514 1.742880 CACCAGCTGGGACACGATG 60.743 63.158 35.42 19.25 41.15 3.84
514 515 2.821366 CCAGCTGGGACACGATGC 60.821 66.667 26.14 0.00 40.01 3.91
515 516 2.821366 CAGCTGGGACACGATGCC 60.821 66.667 5.57 0.00 39.94 4.40
517 518 3.127533 GCTGGGACACGATGCCAC 61.128 66.667 0.83 0.00 45.48 5.01
518 519 2.665000 CTGGGACACGATGCCACT 59.335 61.111 0.83 0.00 45.48 4.00
519 520 1.742880 CTGGGACACGATGCCACTG 60.743 63.158 0.83 0.00 45.48 3.66
520 521 2.347490 GGGACACGATGCCACTGT 59.653 61.111 0.00 0.00 39.10 3.55
521 522 1.741770 GGGACACGATGCCACTGTC 60.742 63.158 0.00 0.00 39.10 3.51
522 523 2.094659 GGACACGATGCCACTGTCG 61.095 63.158 0.00 0.00 43.13 4.35
523 524 1.080772 GACACGATGCCACTGTCGA 60.081 57.895 1.49 0.00 40.11 4.20
524 525 0.666274 GACACGATGCCACTGTCGAA 60.666 55.000 1.49 0.00 40.11 3.71
525 526 0.037326 ACACGATGCCACTGTCGAAT 60.037 50.000 1.49 0.00 40.11 3.34
526 527 1.078709 CACGATGCCACTGTCGAATT 58.921 50.000 1.49 0.00 40.11 2.17
527 528 1.464608 CACGATGCCACTGTCGAATTT 59.535 47.619 1.49 0.00 40.11 1.82
528 529 1.732259 ACGATGCCACTGTCGAATTTC 59.268 47.619 1.49 0.00 40.11 2.17
529 530 1.731709 CGATGCCACTGTCGAATTTCA 59.268 47.619 0.00 0.00 40.11 2.69
530 531 2.352651 CGATGCCACTGTCGAATTTCAT 59.647 45.455 0.00 0.00 40.11 2.57
531 532 3.544834 CGATGCCACTGTCGAATTTCATC 60.545 47.826 0.00 0.00 40.11 2.92
532 533 2.777094 TGCCACTGTCGAATTTCATCA 58.223 42.857 0.00 0.00 0.00 3.07
533 534 3.145286 TGCCACTGTCGAATTTCATCAA 58.855 40.909 0.00 0.00 0.00 2.57
534 535 3.567585 TGCCACTGTCGAATTTCATCAAA 59.432 39.130 0.00 0.00 0.00 2.69
535 536 4.161333 GCCACTGTCGAATTTCATCAAAG 58.839 43.478 0.00 0.00 0.00 2.77
536 537 4.083324 GCCACTGTCGAATTTCATCAAAGA 60.083 41.667 0.00 0.00 0.00 2.52
537 538 5.625251 CCACTGTCGAATTTCATCAAAGAG 58.375 41.667 0.00 0.00 0.00 2.85
538 539 5.084722 CACTGTCGAATTTCATCAAAGAGC 58.915 41.667 0.00 0.00 0.00 4.09
539 540 4.143030 ACTGTCGAATTTCATCAAAGAGCG 60.143 41.667 0.00 0.00 0.00 5.03
540 541 3.745975 TGTCGAATTTCATCAAAGAGCGT 59.254 39.130 0.00 0.00 0.00 5.07
541 542 4.084507 GTCGAATTTCATCAAAGAGCGTG 58.915 43.478 0.00 0.00 0.00 5.34
542 543 2.842485 CGAATTTCATCAAAGAGCGTGC 59.158 45.455 0.00 0.00 0.00 5.34
543 544 3.667695 CGAATTTCATCAAAGAGCGTGCA 60.668 43.478 0.00 0.00 0.00 4.57
544 545 2.686558 TTTCATCAAAGAGCGTGCAC 57.313 45.000 6.82 6.82 0.00 4.57
545 546 0.874390 TTCATCAAAGAGCGTGCACC 59.126 50.000 12.15 4.10 0.00 5.01
546 547 0.250252 TCATCAAAGAGCGTGCACCA 60.250 50.000 12.15 0.00 0.00 4.17
547 548 0.806868 CATCAAAGAGCGTGCACCAT 59.193 50.000 12.15 0.00 0.00 3.55
548 549 0.806868 ATCAAAGAGCGTGCACCATG 59.193 50.000 12.15 0.00 0.00 3.66
549 550 1.443194 CAAAGAGCGTGCACCATGC 60.443 57.895 12.15 9.31 45.65 4.06
550 551 2.629656 AAAGAGCGTGCACCATGCC 61.630 57.895 12.15 3.69 46.38 4.40
553 554 4.972733 AGCGTGCACCATGCCCAA 62.973 61.111 12.15 0.00 46.38 4.12
554 555 3.988525 GCGTGCACCATGCCCAAA 61.989 61.111 12.15 0.00 44.23 3.28
555 556 2.733301 CGTGCACCATGCCCAAAA 59.267 55.556 12.15 0.00 44.23 2.44
556 557 1.068753 CGTGCACCATGCCCAAAAA 59.931 52.632 12.15 0.00 44.23 1.94
557 558 0.320596 CGTGCACCATGCCCAAAAAT 60.321 50.000 12.15 0.00 44.23 1.82
558 559 1.877258 CGTGCACCATGCCCAAAAATT 60.877 47.619 12.15 0.00 44.23 1.82
559 560 1.805943 GTGCACCATGCCCAAAAATTC 59.194 47.619 5.22 0.00 44.23 2.17
648 649 9.202273 GCAAATACAAAATCTTGAACCACATAA 57.798 29.630 0.00 0.00 36.33 1.90
693 694 2.556144 AGGTTAAAACTCCACGTCCC 57.444 50.000 0.00 0.00 0.00 4.46
695 696 1.150827 GTTAAAACTCCACGTCCCCG 58.849 55.000 0.00 0.00 40.83 5.73
697 698 0.318120 TAAAACTCCACGTCCCCGTC 59.682 55.000 0.00 0.00 46.28 4.79
698 699 1.405272 AAAACTCCACGTCCCCGTCT 61.405 55.000 0.00 0.00 46.28 4.18
809 811 7.148255 ACCAATGGAAGTTTCTTTTCTTTTTGC 60.148 33.333 6.16 0.00 0.00 3.68
920 924 3.562182 TGGAGGAAACAAACCCTTCTTC 58.438 45.455 0.00 0.00 31.84 2.87
1020 1024 0.472471 TGGCGTCCAAAGTCCTTCTT 59.528 50.000 0.00 0.00 38.10 2.52
1257 1261 1.069823 ACGATCCTCCAGCATCATGTC 59.930 52.381 0.00 0.00 0.00 3.06
1338 1342 1.059098 AGACCATGCTCTCCAACACA 58.941 50.000 0.00 0.00 0.00 3.72
1699 1703 6.420604 CGTGCACAAGTTTGGATTTTATCTTT 59.579 34.615 18.64 0.00 0.00 2.52
1700 1704 7.593273 CGTGCACAAGTTTGGATTTTATCTTTA 59.407 33.333 18.64 0.00 0.00 1.85
1701 1705 9.423061 GTGCACAAGTTTGGATTTTATCTTTAT 57.577 29.630 13.17 0.00 0.00 1.40
1702 1706 9.995003 TGCACAAGTTTGGATTTTATCTTTATT 57.005 25.926 0.00 0.00 0.00 1.40
1879 2380 7.065085 CAGTCAATCGAGGAAGAATGTAACAAT 59.935 37.037 0.00 0.00 0.00 2.71
1881 2382 8.879759 GTCAATCGAGGAAGAATGTAACAATTA 58.120 33.333 0.00 0.00 0.00 1.40
1928 2429 1.942677 TTTTTGAGACAACCTCGCGA 58.057 45.000 9.26 9.26 44.92 5.87
1929 2430 1.942677 TTTTGAGACAACCTCGCGAA 58.057 45.000 11.33 0.00 44.92 4.70
1930 2431 1.497991 TTTGAGACAACCTCGCGAAG 58.502 50.000 11.33 6.75 44.92 3.79
1954 2455 7.333288 GCTTTTTATTAAAGCGTCACAATGT 57.667 32.000 6.50 0.00 42.46 2.71
1955 2456 7.783209 GCTTTTTATTAAAGCGTCACAATGTT 58.217 30.769 6.50 0.00 42.46 2.71
1956 2457 8.272866 GCTTTTTATTAAAGCGTCACAATGTTT 58.727 29.630 6.50 0.00 42.46 2.83
1959 2460 9.731819 TTTTATTAAAGCGTCACAATGTTTACA 57.268 25.926 0.00 0.00 0.00 2.41
1960 2461 8.942669 TTATTAAAGCGTCACAATGTTTACAG 57.057 30.769 0.00 0.00 0.00 2.74
1961 2462 3.896648 AAGCGTCACAATGTTTACAGG 57.103 42.857 0.00 0.00 0.00 4.00
1962 2463 3.120321 AGCGTCACAATGTTTACAGGA 57.880 42.857 0.00 0.00 0.00 3.86
1963 2464 3.472652 AGCGTCACAATGTTTACAGGAA 58.527 40.909 0.00 0.00 0.00 3.36
1964 2465 3.250040 AGCGTCACAATGTTTACAGGAAC 59.750 43.478 0.00 0.00 0.00 3.62
1965 2466 3.794536 CGTCACAATGTTTACAGGAACG 58.205 45.455 0.00 0.00 32.18 3.95
1966 2467 3.491639 CGTCACAATGTTTACAGGAACGA 59.508 43.478 0.00 0.00 32.18 3.85
1967 2468 4.025563 CGTCACAATGTTTACAGGAACGAA 60.026 41.667 0.00 0.00 32.18 3.85
1968 2469 5.502706 CGTCACAATGTTTACAGGAACGAAA 60.503 40.000 0.00 0.00 32.18 3.46
1969 2470 5.907391 GTCACAATGTTTACAGGAACGAAAG 59.093 40.000 0.00 0.00 32.18 2.62
1970 2471 5.818336 TCACAATGTTTACAGGAACGAAAGA 59.182 36.000 0.00 0.00 32.18 2.52
1971 2472 6.316640 TCACAATGTTTACAGGAACGAAAGAA 59.683 34.615 0.00 0.00 32.18 2.52
1972 2473 6.970043 CACAATGTTTACAGGAACGAAAGAAA 59.030 34.615 0.00 0.00 32.18 2.52
1973 2474 7.165812 CACAATGTTTACAGGAACGAAAGAAAG 59.834 37.037 0.00 0.00 32.18 2.62
1974 2475 7.066525 ACAATGTTTACAGGAACGAAAGAAAGA 59.933 33.333 0.00 0.00 32.18 2.52
1975 2476 7.745620 ATGTTTACAGGAACGAAAGAAAGAT 57.254 32.000 0.00 0.00 32.18 2.40
1976 2477 7.186021 TGTTTACAGGAACGAAAGAAAGATC 57.814 36.000 0.00 0.00 32.18 2.75
1977 2478 6.990349 TGTTTACAGGAACGAAAGAAAGATCT 59.010 34.615 0.00 0.00 32.83 2.75
1978 2479 7.497909 TGTTTACAGGAACGAAAGAAAGATCTT 59.502 33.333 0.88 0.88 38.67 2.40
1979 2480 7.653767 TTACAGGAACGAAAGAAAGATCTTC 57.346 36.000 8.78 2.74 45.19 2.87
1980 2481 4.686554 ACAGGAACGAAAGAAAGATCTTCG 59.313 41.667 8.78 10.25 45.19 3.79
1981 2482 4.092091 CAGGAACGAAAGAAAGATCTTCGG 59.908 45.833 8.78 0.00 45.19 4.30
1982 2483 3.371285 GGAACGAAAGAAAGATCTTCGGG 59.629 47.826 8.78 0.00 45.19 5.14
1983 2484 3.955650 ACGAAAGAAAGATCTTCGGGA 57.044 42.857 8.78 0.00 45.19 5.14
1984 2485 4.473477 ACGAAAGAAAGATCTTCGGGAT 57.527 40.909 8.78 0.00 45.19 3.85
1985 2486 4.184629 ACGAAAGAAAGATCTTCGGGATG 58.815 43.478 8.78 1.06 45.19 3.51
1986 2487 4.081642 ACGAAAGAAAGATCTTCGGGATGA 60.082 41.667 8.78 0.00 45.19 2.92
1987 2488 4.268884 CGAAAGAAAGATCTTCGGGATGAC 59.731 45.833 8.78 0.00 45.19 3.06
1988 2489 3.828875 AGAAAGATCTTCGGGATGACC 57.171 47.619 8.78 0.00 34.33 4.02
1989 2490 3.379452 AGAAAGATCTTCGGGATGACCT 58.621 45.455 8.78 0.00 34.33 3.85
1990 2491 4.547671 AGAAAGATCTTCGGGATGACCTA 58.452 43.478 8.78 0.00 34.33 3.08
1991 2492 4.962995 AGAAAGATCTTCGGGATGACCTAA 59.037 41.667 8.78 0.00 34.33 2.69
1992 2493 4.674281 AAGATCTTCGGGATGACCTAAC 57.326 45.455 0.88 0.00 36.97 2.34
1993 2494 2.966516 AGATCTTCGGGATGACCTAACC 59.033 50.000 0.00 0.00 36.97 2.85
1994 2495 2.241281 TCTTCGGGATGACCTAACCA 57.759 50.000 0.00 0.00 36.97 3.67
1995 2496 2.542550 TCTTCGGGATGACCTAACCAA 58.457 47.619 0.00 0.00 36.97 3.67
1996 2497 2.907696 TCTTCGGGATGACCTAACCAAA 59.092 45.455 0.00 0.00 36.97 3.28
1997 2498 2.773993 TCGGGATGACCTAACCAAAC 57.226 50.000 0.00 0.00 36.97 2.93
1998 2499 1.979308 TCGGGATGACCTAACCAAACA 59.021 47.619 0.00 0.00 36.97 2.83
1999 2500 2.574369 TCGGGATGACCTAACCAAACAT 59.426 45.455 0.00 0.00 36.97 2.71
2000 2501 2.682856 CGGGATGACCTAACCAAACATG 59.317 50.000 0.00 0.00 36.97 3.21
2001 2502 3.023832 GGGATGACCTAACCAAACATGG 58.976 50.000 0.00 0.00 35.85 3.66
2002 2503 2.427095 GGATGACCTAACCAAACATGGC 59.573 50.000 0.00 0.00 0.00 4.40
2003 2504 1.529226 TGACCTAACCAAACATGGCG 58.471 50.000 0.00 0.00 0.00 5.69
2004 2505 0.808755 GACCTAACCAAACATGGCGG 59.191 55.000 0.00 0.00 0.00 6.13
2005 2506 1.248101 ACCTAACCAAACATGGCGGC 61.248 55.000 0.00 0.00 0.00 6.53
2006 2507 1.510844 CTAACCAAACATGGCGGCC 59.489 57.895 13.32 13.32 0.00 6.13
2007 2508 1.228583 TAACCAAACATGGCGGCCA 60.229 52.632 26.11 26.11 38.19 5.36
2008 2509 1.528292 TAACCAAACATGGCGGCCAC 61.528 55.000 26.48 0.00 35.80 5.01
2009 2510 4.067913 CCAAACATGGCGGCCACC 62.068 66.667 26.48 1.63 35.80 4.61
2010 2511 4.067913 CAAACATGGCGGCCACCC 62.068 66.667 26.48 4.73 35.80 4.61
2083 2584 1.000731 CCTGTACCGAACCAACCGTTA 59.999 52.381 0.00 0.00 33.74 3.18
2094 2595 0.611714 CAACCGTTAGCTGGGTAGGT 59.388 55.000 0.00 0.00 34.85 3.08
2118 2619 2.813908 AATCGAACAGCGCGACCC 60.814 61.111 12.10 0.00 40.94 4.46
2122 2623 3.723348 GAACAGCGCGACCCAACC 61.723 66.667 12.10 0.00 0.00 3.77
2142 2643 1.222115 CCCCAACGCTCGCTAATAGC 61.222 60.000 1.41 1.41 38.02 2.97
2159 2660 1.376543 AGCGTCTGCATCAATCCAAG 58.623 50.000 0.00 0.00 46.23 3.61
2184 2685 1.483316 GCCAAAAACGTGCCAAGTAC 58.517 50.000 0.00 0.00 0.00 2.73
2218 2719 0.465642 AGCCTTATTAACGCTGGCCC 60.466 55.000 0.00 0.00 44.19 5.80
2225 2726 0.955905 TTAACGCTGGCCCAAAAGAC 59.044 50.000 0.00 0.00 0.00 3.01
2256 2757 0.321653 ACTGGCACGGCTAGGAAAAG 60.322 55.000 12.44 0.00 41.48 2.27
2263 2764 3.445857 CACGGCTAGGAAAAGCTAGTAC 58.554 50.000 0.00 0.00 42.37 2.73
2264 2765 2.098770 ACGGCTAGGAAAAGCTAGTACG 59.901 50.000 0.00 0.00 42.37 3.67
2265 2766 2.098770 CGGCTAGGAAAAGCTAGTACGT 59.901 50.000 0.00 0.00 42.37 3.57
2266 2767 3.313526 CGGCTAGGAAAAGCTAGTACGTA 59.686 47.826 0.00 0.00 42.37 3.57
2299 2800 7.276658 TGTCTTACTGTAGATTCAAAACACCA 58.723 34.615 0.00 0.00 0.00 4.17
2320 2821 5.163195 ACCACATCCTAAAACTGTTGAGACT 60.163 40.000 0.00 0.00 0.00 3.24
2410 2911 4.207165 ACACATTGGCCTTGTGGTATATC 58.793 43.478 30.37 0.00 46.89 1.63
2424 2925 7.727578 TGTGGTATATCTTTCTACCTTGTGA 57.272 36.000 0.00 0.00 38.57 3.58
2425 2926 8.141298 TGTGGTATATCTTTCTACCTTGTGAA 57.859 34.615 0.00 0.00 38.57 3.18
2426 2927 8.598916 TGTGGTATATCTTTCTACCTTGTGAAA 58.401 33.333 0.00 0.00 38.57 2.69
2427 2928 9.444600 GTGGTATATCTTTCTACCTTGTGAAAA 57.555 33.333 0.00 0.00 38.57 2.29
2445 2946 8.700722 TGTGAAAAATATGATATGTGTTTGCC 57.299 30.769 0.00 0.00 0.00 4.52
2446 2947 7.487509 TGTGAAAAATATGATATGTGTTTGCCG 59.512 33.333 0.00 0.00 0.00 5.69
2524 3625 3.377346 AACTAGAGTATGAGGCATGCG 57.623 47.619 12.44 0.00 31.94 4.73
2526 3627 3.487372 ACTAGAGTATGAGGCATGCGTA 58.513 45.455 13.78 0.81 31.94 4.42
2527 3628 2.802787 AGAGTATGAGGCATGCGTAC 57.197 50.000 13.78 12.10 31.94 3.67
2529 3630 2.667137 GAGTATGAGGCATGCGTACTC 58.333 52.381 23.21 23.21 43.54 2.59
2556 3662 7.433708 TTGGCATATCTTAATCCACATAACG 57.566 36.000 0.00 0.00 0.00 3.18
2586 3692 4.577693 CCATGACATGGTCAATGAACTAGG 59.422 45.833 24.15 0.00 45.96 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.919721 ATTGATAGGCAAAGTGAAGGACACGT 62.920 42.308 0.00 0.00 44.96 4.49
8 9 6.598614 ATTGATAGGCAAAGTGAAGGACACG 61.599 44.000 0.00 0.00 44.96 4.49
9 10 4.702131 ATTGATAGGCAAAGTGAAGGACAC 59.298 41.667 0.00 0.00 42.82 3.67
10 11 4.365514 TTGATAGGCAAAGTGAAGGACA 57.634 40.909 0.00 0.00 32.46 4.02
11 12 5.904362 AATTGATAGGCAAAGTGAAGGAC 57.096 39.130 0.00 0.00 40.48 3.85
15 16 7.118101 GCATTGAAAATTGATAGGCAAAGTGAA 59.882 33.333 0.00 0.00 40.48 3.18
16 17 6.591062 GCATTGAAAATTGATAGGCAAAGTGA 59.409 34.615 0.00 0.00 40.48 3.41
17 18 6.183360 GGCATTGAAAATTGATAGGCAAAGTG 60.183 38.462 0.00 0.00 40.48 3.16
18 19 5.876460 GGCATTGAAAATTGATAGGCAAAGT 59.124 36.000 0.00 0.00 40.48 2.66
19 20 5.875910 TGGCATTGAAAATTGATAGGCAAAG 59.124 36.000 0.00 0.00 40.48 2.77
20 21 5.802465 TGGCATTGAAAATTGATAGGCAAA 58.198 33.333 0.00 0.00 40.48 3.68
21 22 5.417754 TGGCATTGAAAATTGATAGGCAA 57.582 34.783 0.00 0.00 41.53 4.52
23 24 3.805971 GCTGGCATTGAAAATTGATAGGC 59.194 43.478 0.00 0.00 0.00 3.93
24 25 4.141892 TGGCTGGCATTGAAAATTGATAGG 60.142 41.667 0.00 0.00 0.00 2.57
25 26 5.013568 TGGCTGGCATTGAAAATTGATAG 57.986 39.130 0.00 0.00 0.00 2.08
27 28 3.869065 CTGGCTGGCATTGAAAATTGAT 58.131 40.909 3.74 0.00 0.00 2.57
28 29 2.613474 GCTGGCTGGCATTGAAAATTGA 60.613 45.455 3.74 0.00 0.00 2.57
30 31 1.673626 CGCTGGCTGGCATTGAAAATT 60.674 47.619 3.74 0.00 0.00 1.82
33 34 0.966875 ATCGCTGGCTGGCATTGAAA 60.967 50.000 3.74 0.00 0.00 2.69
34 35 0.966875 AATCGCTGGCTGGCATTGAA 60.967 50.000 3.74 0.00 0.00 2.69
35 36 1.378882 GAATCGCTGGCTGGCATTGA 61.379 55.000 3.74 6.18 0.00 2.57
36 37 1.065273 GAATCGCTGGCTGGCATTG 59.935 57.895 3.74 0.08 0.00 2.82
37 38 2.123428 GGAATCGCTGGCTGGCATT 61.123 57.895 3.74 0.00 0.00 3.56
38 39 2.517875 GGAATCGCTGGCTGGCAT 60.518 61.111 3.74 0.00 0.00 4.40
39 40 4.802051 GGGAATCGCTGGCTGGCA 62.802 66.667 3.18 3.18 0.00 4.92
42 43 1.502163 GAATCGGGAATCGCTGGCTG 61.502 60.000 0.00 0.00 39.05 4.85
44 45 2.598632 CGAATCGGGAATCGCTGGC 61.599 63.158 0.00 0.00 39.05 4.85
45 46 0.319900 ATCGAATCGGGAATCGCTGG 60.320 55.000 1.76 0.00 38.87 4.85
46 47 1.457303 GAATCGAATCGGGAATCGCTG 59.543 52.381 1.76 0.00 38.87 5.18
48 49 0.790814 GGAATCGAATCGGGAATCGC 59.209 55.000 1.76 0.00 38.87 4.58
49 50 2.440539 AGGAATCGAATCGGGAATCG 57.559 50.000 1.76 0.00 40.31 3.34
63 64 0.962356 CACCAAGGCAGCGAAGGAAT 60.962 55.000 2.92 0.00 0.00 3.01
64 65 1.600636 CACCAAGGCAGCGAAGGAA 60.601 57.895 2.92 0.00 0.00 3.36
65 66 2.032528 CACCAAGGCAGCGAAGGA 59.967 61.111 2.92 0.00 0.00 3.36
66 67 2.281761 ACACCAAGGCAGCGAAGG 60.282 61.111 0.00 0.00 0.00 3.46
67 68 2.620112 CCACACCAAGGCAGCGAAG 61.620 63.158 0.00 0.00 0.00 3.79
75 76 2.280524 TCGTTCGCCACACCAAGG 60.281 61.111 0.00 0.00 0.00 3.61
76 77 2.604174 GGTCGTTCGCCACACCAAG 61.604 63.158 0.00 0.00 30.75 3.61
78 79 3.509137 GAGGTCGTTCGCCACACCA 62.509 63.158 7.95 0.00 32.05 4.17
79 80 2.737376 GAGGTCGTTCGCCACACC 60.737 66.667 7.95 1.78 0.00 4.16
80 81 3.103911 CGAGGTCGTTCGCCACAC 61.104 66.667 7.95 0.00 33.39 3.82
104 105 4.166011 GTCATGCCGTTCAGCCGC 62.166 66.667 0.00 0.00 0.00 6.53
105 106 3.853330 CGTCATGCCGTTCAGCCG 61.853 66.667 0.00 0.00 0.00 5.52
106 107 1.573829 TTTCGTCATGCCGTTCAGCC 61.574 55.000 0.00 0.00 0.00 4.85
107 108 0.452784 GTTTCGTCATGCCGTTCAGC 60.453 55.000 0.00 0.00 0.00 4.26
108 109 1.148310 AGTTTCGTCATGCCGTTCAG 58.852 50.000 0.00 0.00 0.00 3.02
109 110 2.063266 GTAGTTTCGTCATGCCGTTCA 58.937 47.619 0.00 0.00 0.00 3.18
110 111 2.334838 AGTAGTTTCGTCATGCCGTTC 58.665 47.619 0.00 0.00 0.00 3.95
112 113 2.416431 GGTAGTAGTTTCGTCATGCCGT 60.416 50.000 0.00 0.00 0.00 5.68
113 114 2.159282 AGGTAGTAGTTTCGTCATGCCG 60.159 50.000 0.00 0.00 0.00 5.69
114 115 3.130693 AGAGGTAGTAGTTTCGTCATGCC 59.869 47.826 0.00 0.00 0.00 4.40
115 116 4.142447 TGAGAGGTAGTAGTTTCGTCATGC 60.142 45.833 0.00 0.00 0.00 4.06
119 120 4.639310 TGGATGAGAGGTAGTAGTTTCGTC 59.361 45.833 0.00 0.00 0.00 4.20
120 121 4.597004 TGGATGAGAGGTAGTAGTTTCGT 58.403 43.478 0.00 0.00 0.00 3.85
121 122 5.450688 CCTTGGATGAGAGGTAGTAGTTTCG 60.451 48.000 0.00 0.00 0.00 3.46
122 123 5.682730 GCCTTGGATGAGAGGTAGTAGTTTC 60.683 48.000 0.00 0.00 35.42 2.78
123 124 4.162509 GCCTTGGATGAGAGGTAGTAGTTT 59.837 45.833 0.00 0.00 35.42 2.66
124 125 3.707102 GCCTTGGATGAGAGGTAGTAGTT 59.293 47.826 0.00 0.00 35.42 2.24
125 126 3.301274 GCCTTGGATGAGAGGTAGTAGT 58.699 50.000 0.00 0.00 35.42 2.73
126 127 2.630580 GGCCTTGGATGAGAGGTAGTAG 59.369 54.545 0.00 0.00 35.42 2.57
128 129 1.273838 TGGCCTTGGATGAGAGGTAGT 60.274 52.381 3.32 0.00 35.42 2.73
131 132 0.842030 TGTGGCCTTGGATGAGAGGT 60.842 55.000 3.32 0.00 35.42 3.85
132 133 0.393537 GTGTGGCCTTGGATGAGAGG 60.394 60.000 3.32 0.00 36.09 3.69
133 134 0.393537 GGTGTGGCCTTGGATGAGAG 60.394 60.000 3.32 0.00 0.00 3.20
134 135 1.685224 GGTGTGGCCTTGGATGAGA 59.315 57.895 3.32 0.00 0.00 3.27
135 136 1.746615 CGGTGTGGCCTTGGATGAG 60.747 63.158 3.32 0.00 34.25 2.90
137 138 1.303236 TTCGGTGTGGCCTTGGATG 60.303 57.895 3.32 0.00 34.25 3.51
138 139 1.002134 CTTCGGTGTGGCCTTGGAT 60.002 57.895 3.32 0.00 34.25 3.41
139 140 2.429930 CTTCGGTGTGGCCTTGGA 59.570 61.111 3.32 0.00 34.25 3.53
141 142 1.002134 ATCCTTCGGTGTGGCCTTG 60.002 57.895 3.32 0.00 34.25 3.61
142 143 1.201429 AGATCCTTCGGTGTGGCCTT 61.201 55.000 3.32 0.00 34.25 4.35
143 144 1.613630 AGATCCTTCGGTGTGGCCT 60.614 57.895 3.32 0.00 34.25 5.19
144 145 1.153349 GAGATCCTTCGGTGTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
145 146 0.179000 ATGAGATCCTTCGGTGTGGC 59.821 55.000 0.00 0.00 0.00 5.01
146 147 1.482182 TGATGAGATCCTTCGGTGTGG 59.518 52.381 0.00 0.00 0.00 4.17
147 148 2.544685 GTGATGAGATCCTTCGGTGTG 58.455 52.381 0.00 0.00 0.00 3.82
148 149 1.482593 GGTGATGAGATCCTTCGGTGT 59.517 52.381 0.00 0.00 0.00 4.16
149 150 1.536922 CGGTGATGAGATCCTTCGGTG 60.537 57.143 0.00 0.00 0.00 4.94
151 152 0.032678 CCGGTGATGAGATCCTTCGG 59.967 60.000 0.00 0.00 0.00 4.30
152 153 0.598680 GCCGGTGATGAGATCCTTCG 60.599 60.000 1.90 0.00 0.00 3.79
153 154 0.598680 CGCCGGTGATGAGATCCTTC 60.599 60.000 10.20 0.00 0.00 3.46
154 155 1.443407 CGCCGGTGATGAGATCCTT 59.557 57.895 10.20 0.00 0.00 3.36
156 157 2.029666 CCGCCGGTGATGAGATCC 59.970 66.667 18.79 0.00 0.00 3.36
157 158 2.663188 GCCGCCGGTGATGAGATC 60.663 66.667 18.79 0.00 0.00 2.75
169 170 3.740128 ATCATGTCTCGTGGCCGCC 62.740 63.158 11.56 1.04 0.00 6.13
171 172 2.528743 GCATCATGTCTCGTGGCCG 61.529 63.158 0.00 0.00 0.00 6.13
172 173 1.153289 AGCATCATGTCTCGTGGCC 60.153 57.895 0.00 0.00 0.00 5.36
173 174 0.742281 ACAGCATCATGTCTCGTGGC 60.742 55.000 0.00 0.00 0.00 5.01
174 175 1.004595 CACAGCATCATGTCTCGTGG 58.995 55.000 0.00 0.00 0.00 4.94
175 176 1.657594 GTCACAGCATCATGTCTCGTG 59.342 52.381 0.00 0.00 0.00 4.35
176 177 1.273327 TGTCACAGCATCATGTCTCGT 59.727 47.619 0.00 0.00 0.00 4.18
177 178 2.000429 TGTCACAGCATCATGTCTCG 58.000 50.000 0.00 0.00 0.00 4.04
178 179 3.332919 AGTTGTCACAGCATCATGTCTC 58.667 45.455 0.00 0.00 0.00 3.36
179 180 3.413846 AGTTGTCACAGCATCATGTCT 57.586 42.857 0.00 0.00 0.00 3.41
180 181 3.750130 AGAAGTTGTCACAGCATCATGTC 59.250 43.478 0.00 0.00 0.00 3.06
181 182 3.748083 AGAAGTTGTCACAGCATCATGT 58.252 40.909 0.00 0.00 0.00 3.21
182 183 3.181523 CGAGAAGTTGTCACAGCATCATG 60.182 47.826 0.00 0.00 0.00 3.07
183 184 2.998670 CGAGAAGTTGTCACAGCATCAT 59.001 45.455 0.00 0.00 0.00 2.45
184 185 2.224042 ACGAGAAGTTGTCACAGCATCA 60.224 45.455 0.00 0.00 0.00 3.07
185 186 2.408050 ACGAGAAGTTGTCACAGCATC 58.592 47.619 0.49 0.00 0.00 3.91
189 190 7.219154 GTGAATATAGACGAGAAGTTGTCACAG 59.781 40.741 0.49 0.00 39.36 3.66
191 192 6.194876 CGTGAATATAGACGAGAAGTTGTCAC 59.805 42.308 0.49 0.00 39.36 3.67
192 193 6.255950 CGTGAATATAGACGAGAAGTTGTCA 58.744 40.000 0.49 0.00 39.36 3.58
193 194 5.171695 GCGTGAATATAGACGAGAAGTTGTC 59.828 44.000 9.92 0.00 37.81 3.18
195 196 4.441415 GGCGTGAATATAGACGAGAAGTTG 59.559 45.833 9.92 0.00 37.81 3.16
198 199 3.227147 CGGCGTGAATATAGACGAGAAG 58.773 50.000 9.92 0.00 38.98 2.85
199 200 2.031420 CCGGCGTGAATATAGACGAGAA 60.031 50.000 6.01 0.00 38.98 2.87
200 201 1.534163 CCGGCGTGAATATAGACGAGA 59.466 52.381 6.01 0.00 38.98 4.04
201 202 1.534163 TCCGGCGTGAATATAGACGAG 59.466 52.381 6.01 3.94 38.98 4.18
202 203 1.534163 CTCCGGCGTGAATATAGACGA 59.466 52.381 6.01 0.00 38.98 4.20
203 204 1.401148 CCTCCGGCGTGAATATAGACG 60.401 57.143 6.01 2.76 38.63 4.18
204 205 1.884579 TCCTCCGGCGTGAATATAGAC 59.115 52.381 6.01 0.00 0.00 2.59
206 207 1.887198 AGTCCTCCGGCGTGAATATAG 59.113 52.381 6.01 0.00 0.00 1.31
207 208 1.991121 AGTCCTCCGGCGTGAATATA 58.009 50.000 6.01 0.00 0.00 0.86
208 209 1.068741 GAAGTCCTCCGGCGTGAATAT 59.931 52.381 6.01 0.00 0.00 1.28
209 210 0.458669 GAAGTCCTCCGGCGTGAATA 59.541 55.000 6.01 0.00 0.00 1.75
210 211 1.218316 GAAGTCCTCCGGCGTGAAT 59.782 57.895 6.01 0.00 0.00 2.57
211 212 2.654877 GAAGTCCTCCGGCGTGAA 59.345 61.111 6.01 0.00 0.00 3.18
212 213 3.744719 CGAAGTCCTCCGGCGTGA 61.745 66.667 6.01 1.65 0.00 4.35
213 214 3.569049 AACGAAGTCCTCCGGCGTG 62.569 63.158 6.01 0.00 45.00 5.34
216 217 2.434359 CCAACGAAGTCCTCCGGC 60.434 66.667 0.00 0.00 45.00 6.13
217 218 2.434359 GCCAACGAAGTCCTCCGG 60.434 66.667 0.00 0.00 45.00 5.14
218 219 2.809601 CGCCAACGAAGTCCTCCG 60.810 66.667 0.00 0.00 45.00 4.63
219 220 2.434359 CCGCCAACGAAGTCCTCC 60.434 66.667 0.00 0.00 45.00 4.30
220 221 3.119096 GCCGCCAACGAAGTCCTC 61.119 66.667 0.00 0.00 45.00 3.71
223 224 3.343421 AACGCCGCCAACGAAGTC 61.343 61.111 0.00 0.00 45.00 3.01
236 237 3.112709 GGAGTCGGTCAGCAACGC 61.113 66.667 0.00 0.00 0.00 4.84
238 239 2.022129 CGTGGAGTCGGTCAGCAAC 61.022 63.158 0.00 0.00 0.00 4.17
239 240 2.023414 AACGTGGAGTCGGTCAGCAA 62.023 55.000 0.00 0.00 34.94 3.91
241 242 1.733399 GAACGTGGAGTCGGTCAGC 60.733 63.158 0.00 0.00 45.39 4.26
242 243 4.554163 GAACGTGGAGTCGGTCAG 57.446 61.111 0.00 0.00 45.39 3.51
244 245 0.526662 AGATGAACGTGGAGTCGGTC 59.473 55.000 0.00 0.00 46.13 4.79
245 246 0.966920 AAGATGAACGTGGAGTCGGT 59.033 50.000 0.00 0.00 34.94 4.69
246 247 1.350193 CAAGATGAACGTGGAGTCGG 58.650 55.000 0.00 0.00 34.94 4.79
253 254 1.390123 CGTACTGCCAAGATGAACGTG 59.610 52.381 0.00 0.00 0.00 4.49
254 255 1.710013 CGTACTGCCAAGATGAACGT 58.290 50.000 0.00 0.00 0.00 3.99
255 256 0.370273 GCGTACTGCCAAGATGAACG 59.630 55.000 0.00 0.00 37.76 3.95
266 267 2.432628 AGCGTCTTGGCGTACTGC 60.433 61.111 0.00 1.72 45.38 4.40
267 268 0.944311 AACAGCGTCTTGGCGTACTG 60.944 55.000 0.00 0.00 38.18 2.74
268 269 0.944311 CAACAGCGTCTTGGCGTACT 60.944 55.000 0.00 0.00 38.18 2.73
269 270 1.491563 CAACAGCGTCTTGGCGTAC 59.508 57.895 0.00 0.00 38.18 3.67
270 271 1.666553 CCAACAGCGTCTTGGCGTA 60.667 57.895 0.00 0.00 38.18 4.42
271 272 2.972505 CCAACAGCGTCTTGGCGT 60.973 61.111 0.00 0.00 38.18 5.68
290 291 4.875713 ACAATCCGCCCGGCCATC 62.876 66.667 2.24 0.00 34.68 3.51
291 292 4.875713 GACAATCCGCCCGGCCAT 62.876 66.667 2.24 0.00 34.68 4.40
294 295 3.810896 GTTGACAATCCGCCCGGC 61.811 66.667 0.00 0.00 34.68 6.13
295 296 3.496131 CGTTGACAATCCGCCCGG 61.496 66.667 0.00 0.00 0.00 5.73
296 297 3.496131 CCGTTGACAATCCGCCCG 61.496 66.667 0.00 0.00 0.00 6.13
297 298 3.810896 GCCGTTGACAATCCGCCC 61.811 66.667 0.00 0.00 0.00 6.13
298 299 4.160635 CGCCGTTGACAATCCGCC 62.161 66.667 0.00 0.00 0.00 6.13
299 300 4.160635 CCGCCGTTGACAATCCGC 62.161 66.667 0.00 0.00 0.00 5.54
300 301 4.160635 GCCGCCGTTGACAATCCG 62.161 66.667 0.00 0.00 0.00 4.18
301 302 2.622011 TTGCCGCCGTTGACAATCC 61.622 57.895 0.00 0.00 0.00 3.01
302 303 1.442017 GTTGCCGCCGTTGACAATC 60.442 57.895 0.00 0.00 0.00 2.67
303 304 2.642700 GTTGCCGCCGTTGACAAT 59.357 55.556 0.00 0.00 0.00 2.71
304 305 3.943034 CGTTGCCGCCGTTGACAA 61.943 61.111 0.00 0.00 0.00 3.18
305 306 4.893601 TCGTTGCCGCCGTTGACA 62.894 61.111 0.00 0.00 0.00 3.58
306 307 4.072088 CTCGTTGCCGCCGTTGAC 62.072 66.667 0.00 0.00 0.00 3.18
313 314 4.090057 GTCTTGCCTCGTTGCCGC 62.090 66.667 0.00 0.00 0.00 6.53
314 315 3.777925 CGTCTTGCCTCGTTGCCG 61.778 66.667 0.00 0.00 0.00 5.69
315 316 2.357034 TCGTCTTGCCTCGTTGCC 60.357 61.111 0.00 0.00 0.00 4.52
316 317 1.618640 GAGTCGTCTTGCCTCGTTGC 61.619 60.000 0.00 0.00 0.00 4.17
317 318 1.009389 GGAGTCGTCTTGCCTCGTTG 61.009 60.000 0.00 0.00 0.00 4.10
318 319 1.179814 AGGAGTCGTCTTGCCTCGTT 61.180 55.000 0.00 0.00 0.00 3.85
319 320 1.179814 AAGGAGTCGTCTTGCCTCGT 61.180 55.000 0.00 0.00 0.00 4.18
320 321 0.734253 CAAGGAGTCGTCTTGCCTCG 60.734 60.000 0.00 0.00 35.77 4.63
321 322 0.603569 TCAAGGAGTCGTCTTGCCTC 59.396 55.000 4.70 0.00 40.82 4.70
322 323 1.205893 GATCAAGGAGTCGTCTTGCCT 59.794 52.381 4.70 0.00 40.82 4.75
323 324 1.066858 TGATCAAGGAGTCGTCTTGCC 60.067 52.381 0.00 0.00 40.82 4.52
324 325 2.370281 TGATCAAGGAGTCGTCTTGC 57.630 50.000 0.00 0.00 40.82 4.01
325 326 3.193263 CCATGATCAAGGAGTCGTCTTG 58.807 50.000 11.68 3.45 41.99 3.02
326 327 2.419297 GCCATGATCAAGGAGTCGTCTT 60.419 50.000 21.00 0.00 0.00 3.01
327 328 1.137872 GCCATGATCAAGGAGTCGTCT 59.862 52.381 21.00 0.00 0.00 4.18
328 329 1.576356 GCCATGATCAAGGAGTCGTC 58.424 55.000 21.00 0.00 0.00 4.20
329 330 0.179100 CGCCATGATCAAGGAGTCGT 60.179 55.000 21.00 0.00 0.00 4.34
330 331 0.877649 CCGCCATGATCAAGGAGTCG 60.878 60.000 21.00 13.75 0.00 4.18
331 332 0.465705 TCCGCCATGATCAAGGAGTC 59.534 55.000 21.00 2.22 0.00 3.36
332 333 0.911769 TTCCGCCATGATCAAGGAGT 59.088 50.000 21.00 0.00 32.03 3.85
333 334 1.590932 CTTCCGCCATGATCAAGGAG 58.409 55.000 21.00 16.92 32.03 3.69
334 335 0.464373 GCTTCCGCCATGATCAAGGA 60.464 55.000 21.00 13.70 0.00 3.36
335 336 1.779025 CGCTTCCGCCATGATCAAGG 61.779 60.000 12.75 12.75 0.00 3.61
336 337 1.645455 CGCTTCCGCCATGATCAAG 59.355 57.895 0.00 0.00 0.00 3.02
337 338 1.819208 CCGCTTCCGCCATGATCAA 60.819 57.895 0.00 0.00 0.00 2.57
338 339 2.203056 CCGCTTCCGCCATGATCA 60.203 61.111 0.00 0.00 0.00 2.92
339 340 2.974698 CCCGCTTCCGCCATGATC 60.975 66.667 0.00 0.00 0.00 2.92
347 348 4.697756 TGTCTTGGCCCGCTTCCG 62.698 66.667 0.00 0.00 0.00 4.30
348 349 2.747855 CTGTCTTGGCCCGCTTCC 60.748 66.667 0.00 0.00 0.00 3.46
349 350 2.032681 ACTGTCTTGGCCCGCTTC 59.967 61.111 0.00 0.00 0.00 3.86
350 351 2.032681 GACTGTCTTGGCCCGCTT 59.967 61.111 0.00 0.00 0.00 4.68
351 352 2.596851 ATGACTGTCTTGGCCCGCT 61.597 57.895 9.51 0.00 0.00 5.52
352 353 2.045926 ATGACTGTCTTGGCCCGC 60.046 61.111 9.51 0.00 0.00 6.13
353 354 1.003355 ACATGACTGTCTTGGCCCG 60.003 57.895 22.66 0.00 0.00 6.13
354 355 2.859992 GACATGACTGTCTTGGCCC 58.140 57.895 22.66 11.07 46.84 5.80
362 363 0.108615 GCCGCTAGTGACATGACTGT 60.109 55.000 4.44 0.00 38.67 3.55
363 364 0.807667 GGCCGCTAGTGACATGACTG 60.808 60.000 4.44 0.00 0.00 3.51
364 365 1.517832 GGCCGCTAGTGACATGACT 59.482 57.895 4.44 0.00 0.00 3.41
365 366 1.878522 CGGCCGCTAGTGACATGAC 60.879 63.158 14.67 0.00 0.00 3.06
366 367 1.600511 TTCGGCCGCTAGTGACATGA 61.601 55.000 23.51 0.00 0.00 3.07
367 368 1.153647 TTCGGCCGCTAGTGACATG 60.154 57.895 23.51 0.00 0.00 3.21
368 369 1.153628 GTTCGGCCGCTAGTGACAT 60.154 57.895 23.51 0.00 0.00 3.06
369 370 2.260434 GTTCGGCCGCTAGTGACA 59.740 61.111 23.51 0.00 0.00 3.58
370 371 2.508663 GGTTCGGCCGCTAGTGAC 60.509 66.667 23.51 11.29 0.00 3.67
371 372 2.678934 AGGTTCGGCCGCTAGTGA 60.679 61.111 23.51 0.00 43.70 3.41
372 373 2.509336 CAGGTTCGGCCGCTAGTG 60.509 66.667 23.51 11.71 43.70 2.74
373 374 4.452733 GCAGGTTCGGCCGCTAGT 62.453 66.667 23.51 1.43 43.70 2.57
374 375 2.782222 TAGCAGGTTCGGCCGCTAG 61.782 63.158 23.51 9.43 43.30 3.42
375 376 2.756691 TAGCAGGTTCGGCCGCTA 60.757 61.111 23.51 12.29 43.30 4.26
376 377 4.452733 GTAGCAGGTTCGGCCGCT 62.453 66.667 23.51 13.47 44.73 5.52
377 378 3.952628 AAGTAGCAGGTTCGGCCGC 62.953 63.158 23.51 7.37 43.70 6.53
378 379 2.100631 CAAGTAGCAGGTTCGGCCG 61.101 63.158 22.12 22.12 43.70 6.13
379 380 0.605589 AACAAGTAGCAGGTTCGGCC 60.606 55.000 0.00 0.00 37.58 6.13
380 381 0.517316 CAACAAGTAGCAGGTTCGGC 59.483 55.000 0.00 0.00 0.00 5.54
381 382 2.163818 TCAACAAGTAGCAGGTTCGG 57.836 50.000 0.00 0.00 0.00 4.30
382 383 2.159653 GCATCAACAAGTAGCAGGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
383 384 3.077359 AGCATCAACAAGTAGCAGGTTC 58.923 45.455 0.00 0.00 0.00 3.62
384 385 2.816087 CAGCATCAACAAGTAGCAGGTT 59.184 45.455 0.00 0.00 0.00 3.50
385 386 2.430465 CAGCATCAACAAGTAGCAGGT 58.570 47.619 0.00 0.00 0.00 4.00
386 387 1.741706 CCAGCATCAACAAGTAGCAGG 59.258 52.381 0.00 0.00 0.00 4.85
387 388 1.131883 GCCAGCATCAACAAGTAGCAG 59.868 52.381 0.00 0.00 0.00 4.24
388 389 1.167851 GCCAGCATCAACAAGTAGCA 58.832 50.000 0.00 0.00 0.00 3.49
389 390 1.457346 AGCCAGCATCAACAAGTAGC 58.543 50.000 0.00 0.00 0.00 3.58
390 391 3.829948 CAAAGCCAGCATCAACAAGTAG 58.170 45.455 0.00 0.00 0.00 2.57
391 392 2.030007 GCAAAGCCAGCATCAACAAGTA 60.030 45.455 0.00 0.00 0.00 2.24
392 393 1.269936 GCAAAGCCAGCATCAACAAGT 60.270 47.619 0.00 0.00 0.00 3.16
393 394 1.425412 GCAAAGCCAGCATCAACAAG 58.575 50.000 0.00 0.00 0.00 3.16
394 395 0.318869 CGCAAAGCCAGCATCAACAA 60.319 50.000 0.00 0.00 0.00 2.83
395 396 1.286570 CGCAAAGCCAGCATCAACA 59.713 52.632 0.00 0.00 0.00 3.33
396 397 2.090524 GCGCAAAGCCAGCATCAAC 61.091 57.895 0.30 0.00 40.81 3.18
397 398 2.259204 GCGCAAAGCCAGCATCAA 59.741 55.556 0.30 0.00 40.81 2.57
407 408 1.425428 GATCGGTCTTGGCGCAAAG 59.575 57.895 18.94 18.94 0.00 2.77
408 409 2.387445 CGATCGGTCTTGGCGCAAA 61.387 57.895 10.83 2.19 0.00 3.68
409 410 2.813474 CGATCGGTCTTGGCGCAA 60.813 61.111 10.83 0.00 0.00 4.85
410 411 4.812476 CCGATCGGTCTTGGCGCA 62.812 66.667 26.35 0.00 0.00 6.09
413 414 2.792947 TAGCCCGATCGGTCTTGGC 61.793 63.158 31.22 25.49 39.12 4.52
414 415 1.067582 GTAGCCCGATCGGTCTTGG 59.932 63.158 31.22 17.27 0.00 3.61
415 416 0.030908 GAGTAGCCCGATCGGTCTTG 59.969 60.000 31.22 17.64 0.00 3.02
416 417 1.108132 GGAGTAGCCCGATCGGTCTT 61.108 60.000 31.22 18.48 0.00 3.01
417 418 1.528776 GGAGTAGCCCGATCGGTCT 60.529 63.158 31.22 27.15 0.00 3.85
418 419 1.179814 ATGGAGTAGCCCGATCGGTC 61.180 60.000 31.22 21.04 34.97 4.79
419 420 1.152525 ATGGAGTAGCCCGATCGGT 60.153 57.895 31.22 17.43 34.97 4.69
420 421 1.290324 CATGGAGTAGCCCGATCGG 59.710 63.158 27.65 27.65 34.97 4.18
421 422 1.290324 CCATGGAGTAGCCCGATCG 59.710 63.158 5.56 8.51 34.97 3.69
422 423 0.034059 CACCATGGAGTAGCCCGATC 59.966 60.000 21.47 0.00 34.97 3.69
423 424 2.044806 GCACCATGGAGTAGCCCGAT 62.045 60.000 21.47 0.00 34.97 4.18
424 425 2.731571 GCACCATGGAGTAGCCCGA 61.732 63.158 21.47 0.00 34.97 5.14
425 426 2.203070 GCACCATGGAGTAGCCCG 60.203 66.667 21.47 0.00 34.97 6.13
426 427 2.193248 GGCACCATGGAGTAGCCC 59.807 66.667 21.47 3.00 39.42 5.19
427 428 2.203070 CGGCACCATGGAGTAGCC 60.203 66.667 21.47 22.57 41.86 3.93
428 429 2.897350 GCGGCACCATGGAGTAGC 60.897 66.667 21.47 16.21 0.00 3.58
429 430 1.522355 CTGCGGCACCATGGAGTAG 60.522 63.158 21.47 11.34 0.00 2.57
430 431 1.836999 AACTGCGGCACCATGGAGTA 61.837 55.000 21.47 5.38 35.59 2.59
431 432 2.697147 AAACTGCGGCACCATGGAGT 62.697 55.000 21.47 7.28 38.50 3.85
432 433 0.676466 TAAACTGCGGCACCATGGAG 60.676 55.000 21.47 12.70 0.00 3.86
433 434 0.250945 TTAAACTGCGGCACCATGGA 60.251 50.000 21.47 0.00 0.00 3.41
434 435 0.817013 ATTAAACTGCGGCACCATGG 59.183 50.000 11.19 11.19 0.00 3.66
435 436 2.529151 GAATTAAACTGCGGCACCATG 58.471 47.619 0.00 0.00 0.00 3.66
436 437 1.476488 GGAATTAAACTGCGGCACCAT 59.524 47.619 0.00 0.00 0.00 3.55
437 438 0.885196 GGAATTAAACTGCGGCACCA 59.115 50.000 0.00 0.00 0.00 4.17
438 439 0.885196 TGGAATTAAACTGCGGCACC 59.115 50.000 0.00 0.00 0.00 5.01
439 440 2.791158 CGATGGAATTAAACTGCGGCAC 60.791 50.000 0.00 0.00 0.00 5.01
440 441 1.400142 CGATGGAATTAAACTGCGGCA 59.600 47.619 1.29 1.29 0.00 5.69
441 442 1.268539 CCGATGGAATTAAACTGCGGC 60.269 52.381 0.00 0.00 0.00 6.53
442 443 2.014128 ACCGATGGAATTAAACTGCGG 58.986 47.619 0.00 0.00 42.85 5.69
443 444 3.051606 CACCGATGGAATTAAACTGCG 57.948 47.619 0.00 0.00 0.00 5.18
456 457 0.039617 GCTCTCTCGATCCACCGATG 60.040 60.000 0.00 0.00 37.96 3.84
457 458 0.466372 TGCTCTCTCGATCCACCGAT 60.466 55.000 0.00 0.00 37.96 4.18
458 459 0.679960 TTGCTCTCTCGATCCACCGA 60.680 55.000 0.00 0.00 37.03 4.69
459 460 0.173481 TTTGCTCTCTCGATCCACCG 59.827 55.000 0.00 0.00 0.00 4.94
460 461 2.386661 TTTTGCTCTCTCGATCCACC 57.613 50.000 0.00 0.00 0.00 4.61
477 478 3.324268 TGGTGATGGTGTGATGCATTTTT 59.676 39.130 0.00 0.00 0.00 1.94
478 479 2.898612 TGGTGATGGTGTGATGCATTTT 59.101 40.909 0.00 0.00 0.00 1.82
479 480 2.494471 CTGGTGATGGTGTGATGCATTT 59.506 45.455 0.00 0.00 0.00 2.32
480 481 2.097036 CTGGTGATGGTGTGATGCATT 58.903 47.619 0.00 0.00 0.00 3.56
481 482 1.758936 CTGGTGATGGTGTGATGCAT 58.241 50.000 0.00 0.00 0.00 3.96
482 483 0.961857 GCTGGTGATGGTGTGATGCA 60.962 55.000 0.00 0.00 0.00 3.96
483 484 0.679002 AGCTGGTGATGGTGTGATGC 60.679 55.000 0.00 0.00 0.00 3.91
484 485 1.092348 CAGCTGGTGATGGTGTGATG 58.908 55.000 5.57 0.00 0.00 3.07
485 486 0.034767 CCAGCTGGTGATGGTGTGAT 60.035 55.000 25.53 0.00 44.20 3.06
486 487 1.376086 CCAGCTGGTGATGGTGTGA 59.624 57.895 25.53 0.00 44.20 3.58
487 488 3.991999 CCAGCTGGTGATGGTGTG 58.008 61.111 25.53 0.00 44.20 3.82
492 493 1.742880 CGTGTCCCAGCTGGTGATG 60.743 63.158 30.63 15.82 34.77 3.07
493 494 1.267574 ATCGTGTCCCAGCTGGTGAT 61.268 55.000 30.63 20.40 34.77 3.06
494 495 1.913262 ATCGTGTCCCAGCTGGTGA 60.913 57.895 30.63 23.29 34.77 4.02
495 496 1.742880 CATCGTGTCCCAGCTGGTG 60.743 63.158 30.63 21.43 34.77 4.17
496 497 2.665000 CATCGTGTCCCAGCTGGT 59.335 61.111 30.63 8.06 34.77 4.00
497 498 2.821366 GCATCGTGTCCCAGCTGG 60.821 66.667 26.87 26.87 0.00 4.85
498 499 2.821366 GGCATCGTGTCCCAGCTG 60.821 66.667 6.78 6.78 0.00 4.24
499 500 3.321648 TGGCATCGTGTCCCAGCT 61.322 61.111 0.00 0.00 0.00 4.24
500 501 3.127533 GTGGCATCGTGTCCCAGC 61.128 66.667 0.00 0.00 0.00 4.85
501 502 1.742880 CAGTGGCATCGTGTCCCAG 60.743 63.158 0.00 0.00 0.00 4.45
502 503 2.347114 CAGTGGCATCGTGTCCCA 59.653 61.111 0.00 0.00 0.00 4.37
503 504 1.741770 GACAGTGGCATCGTGTCCC 60.742 63.158 13.66 0.00 35.54 4.46
504 505 2.094659 CGACAGTGGCATCGTGTCC 61.095 63.158 17.02 5.20 37.85 4.02
505 506 0.666274 TTCGACAGTGGCATCGTGTC 60.666 55.000 14.31 14.31 39.38 3.67
506 507 0.037326 ATTCGACAGTGGCATCGTGT 60.037 50.000 8.63 4.54 39.38 4.49
507 508 1.078709 AATTCGACAGTGGCATCGTG 58.921 50.000 8.63 1.39 39.38 4.35
508 509 1.732259 GAAATTCGACAGTGGCATCGT 59.268 47.619 8.63 0.21 39.38 3.73
509 510 1.731709 TGAAATTCGACAGTGGCATCG 59.268 47.619 0.00 2.67 39.72 3.84
510 511 3.374988 TGATGAAATTCGACAGTGGCATC 59.625 43.478 0.00 0.00 33.41 3.91
511 512 3.346315 TGATGAAATTCGACAGTGGCAT 58.654 40.909 0.00 0.00 0.00 4.40
512 513 2.777094 TGATGAAATTCGACAGTGGCA 58.223 42.857 0.00 0.00 0.00 4.92
513 514 3.829886 TTGATGAAATTCGACAGTGGC 57.170 42.857 0.00 0.00 0.00 5.01
514 515 5.611796 TCTTTGATGAAATTCGACAGTGG 57.388 39.130 0.00 0.00 0.00 4.00
515 516 5.084722 GCTCTTTGATGAAATTCGACAGTG 58.915 41.667 0.00 0.00 0.00 3.66
516 517 4.143030 CGCTCTTTGATGAAATTCGACAGT 60.143 41.667 0.00 0.00 0.00 3.55
517 518 4.143030 ACGCTCTTTGATGAAATTCGACAG 60.143 41.667 0.00 0.00 0.00 3.51
518 519 3.745975 ACGCTCTTTGATGAAATTCGACA 59.254 39.130 0.00 0.00 0.00 4.35
519 520 4.084507 CACGCTCTTTGATGAAATTCGAC 58.915 43.478 0.00 0.00 0.00 4.20
520 521 3.424829 GCACGCTCTTTGATGAAATTCGA 60.425 43.478 0.00 0.00 0.00 3.71
521 522 2.842485 GCACGCTCTTTGATGAAATTCG 59.158 45.455 0.00 0.00 0.00 3.34
522 523 3.605486 GTGCACGCTCTTTGATGAAATTC 59.395 43.478 0.00 0.00 0.00 2.17
523 524 3.568538 GTGCACGCTCTTTGATGAAATT 58.431 40.909 0.00 0.00 0.00 1.82
524 525 2.095059 GGTGCACGCTCTTTGATGAAAT 60.095 45.455 11.45 0.00 0.00 2.17
525 526 1.266718 GGTGCACGCTCTTTGATGAAA 59.733 47.619 11.45 0.00 0.00 2.69
526 527 0.874390 GGTGCACGCTCTTTGATGAA 59.126 50.000 11.45 0.00 0.00 2.57
527 528 0.250252 TGGTGCACGCTCTTTGATGA 60.250 50.000 11.45 0.00 0.00 2.92
528 529 0.806868 ATGGTGCACGCTCTTTGATG 59.193 50.000 11.45 0.00 0.00 3.07
529 530 0.806868 CATGGTGCACGCTCTTTGAT 59.193 50.000 11.45 0.00 0.00 2.57
530 531 1.855213 GCATGGTGCACGCTCTTTGA 61.855 55.000 11.45 0.00 44.26 2.69
531 532 1.443194 GCATGGTGCACGCTCTTTG 60.443 57.895 11.45 3.12 44.26 2.77
532 533 2.956987 GCATGGTGCACGCTCTTT 59.043 55.556 11.45 0.00 44.26 2.52
541 542 2.477845 AGAATTTTTGGGCATGGTGC 57.522 45.000 0.00 0.00 44.08 5.01
542 543 6.874288 TTTTTAGAATTTTTGGGCATGGTG 57.126 33.333 0.00 0.00 0.00 4.17
543 544 9.752228 ATTATTTTTAGAATTTTTGGGCATGGT 57.248 25.926 0.00 0.00 0.00 3.55
593 594 9.856488 TTCCATATCGTTTATCACTTCTATAGC 57.144 33.333 0.00 0.00 0.00 2.97
693 694 6.667558 ATTACTAAAGAAGGGGATAGACGG 57.332 41.667 0.00 0.00 0.00 4.79
695 696 8.724113 AGGTATTACTAAAGAAGGGGATAGAC 57.276 38.462 0.00 0.00 0.00 2.59
741 743 3.006859 CACATCTATATGCCGGTTCTCCA 59.993 47.826 1.90 0.00 36.50 3.86
790 792 8.925700 TCTTTCTGCAAAAAGAAAAGAAACTTC 58.074 29.630 12.79 0.00 43.67 3.01
809 811 1.284313 AGGGAAGGCCTCTCTTTCTG 58.716 55.000 5.23 0.00 25.83 3.02
913 917 7.484959 GGTTATTGCTATTTTTGTCGAAGAAGG 59.515 37.037 0.00 0.00 39.69 3.46
920 924 5.317733 TGGGGTTATTGCTATTTTTGTCG 57.682 39.130 0.00 0.00 0.00 4.35
1020 1024 2.735772 GGCGAGGAGGAGGATTGCA 61.736 63.158 0.00 0.00 0.00 4.08
1257 1261 3.118408 TGGGGTCGAAATACTTGATGAGG 60.118 47.826 0.00 0.00 0.00 3.86
1338 1342 1.595311 TGGTGCCCATGTCCTTATCT 58.405 50.000 0.00 0.00 0.00 1.98
1536 1540 3.744155 CCCTTCCCCTTGGGCCTC 61.744 72.222 4.53 0.00 43.94 4.70
1543 1547 2.947217 GCCCTTCCCCTTCCCCTT 60.947 66.667 0.00 0.00 0.00 3.95
1544 1548 3.848200 TTGCCCTTCCCCTTCCCCT 62.848 63.158 0.00 0.00 0.00 4.79
1545 1549 3.272847 TTGCCCTTCCCCTTCCCC 61.273 66.667 0.00 0.00 0.00 4.81
1546 1550 2.360585 CTTGCCCTTCCCCTTCCC 59.639 66.667 0.00 0.00 0.00 3.97
1547 1551 2.360585 CCTTGCCCTTCCCCTTCC 59.639 66.667 0.00 0.00 0.00 3.46
1548 1552 2.360585 CCCTTGCCCTTCCCCTTC 59.639 66.667 0.00 0.00 0.00 3.46
1614 1618 2.159043 TCAATTCTCAGATCAGGCCGTC 60.159 50.000 0.00 0.00 0.00 4.79
1617 1621 3.557228 ACTCAATTCTCAGATCAGGCC 57.443 47.619 0.00 0.00 0.00 5.19
1665 1669 1.081242 CTTGTGCACGCATGGTTCC 60.081 57.895 13.13 0.00 0.00 3.62
1699 1703 8.696043 AAGATGTATGAAGCCTTTGCATAATA 57.304 30.769 0.00 0.00 41.13 0.98
1700 1704 7.504911 AGAAGATGTATGAAGCCTTTGCATAAT 59.495 33.333 0.00 0.00 41.13 1.28
1701 1705 6.830324 AGAAGATGTATGAAGCCTTTGCATAA 59.170 34.615 0.00 0.00 41.13 1.90
1702 1706 6.359804 AGAAGATGTATGAAGCCTTTGCATA 58.640 36.000 0.00 0.00 41.13 3.14
1848 2349 2.005451 CTTCCTCGATTGACTGCCTTG 58.995 52.381 0.00 0.00 0.00 3.61
1909 2410 1.942677 TCGCGAGGTTGTCTCAAAAA 58.057 45.000 3.71 0.00 42.55 1.94
1910 2411 1.864711 CTTCGCGAGGTTGTCTCAAAA 59.135 47.619 9.59 0.00 42.55 2.44
1911 2412 1.497991 CTTCGCGAGGTTGTCTCAAA 58.502 50.000 9.59 0.00 42.55 2.69
1912 2413 0.944311 GCTTCGCGAGGTTGTCTCAA 60.944 55.000 19.98 0.00 42.55 3.02
1913 2414 1.372997 GCTTCGCGAGGTTGTCTCA 60.373 57.895 19.98 0.00 42.55 3.27
1914 2415 0.667792 AAGCTTCGCGAGGTTGTCTC 60.668 55.000 19.98 1.57 44.07 3.36
1915 2416 0.249911 AAAGCTTCGCGAGGTTGTCT 60.250 50.000 19.98 5.19 44.94 3.41
1916 2417 0.586802 AAAAGCTTCGCGAGGTTGTC 59.413 50.000 19.98 2.72 44.94 3.18
1917 2418 1.021968 AAAAAGCTTCGCGAGGTTGT 58.978 45.000 19.98 12.71 44.94 3.32
1918 2419 2.961522 TAAAAAGCTTCGCGAGGTTG 57.038 45.000 19.98 7.98 44.94 3.77
1920 2421 5.616488 TTTAATAAAAAGCTTCGCGAGGT 57.384 34.783 19.98 11.81 37.82 3.85
1921 2422 4.495828 GCTTTAATAAAAAGCTTCGCGAGG 59.504 41.667 14.69 14.69 46.64 4.63
1922 2423 5.591202 GCTTTAATAAAAAGCTTCGCGAG 57.409 39.130 9.59 4.97 46.64 5.03
1930 2431 7.333288 ACATTGTGACGCTTTAATAAAAAGC 57.667 32.000 11.50 11.50 46.68 3.51
1933 2434 9.731819 TGTAAACATTGTGACGCTTTAATAAAA 57.268 25.926 0.00 0.00 0.00 1.52
1934 2435 9.388346 CTGTAAACATTGTGACGCTTTAATAAA 57.612 29.630 0.00 0.00 0.00 1.40
1935 2436 8.018520 CCTGTAAACATTGTGACGCTTTAATAA 58.981 33.333 0.00 0.00 0.00 1.40
1936 2437 7.388224 TCCTGTAAACATTGTGACGCTTTAATA 59.612 33.333 0.00 0.00 0.00 0.98
1937 2438 6.205853 TCCTGTAAACATTGTGACGCTTTAAT 59.794 34.615 0.00 0.00 0.00 1.40
1938 2439 5.527951 TCCTGTAAACATTGTGACGCTTTAA 59.472 36.000 0.00 0.00 0.00 1.52
1939 2440 5.057819 TCCTGTAAACATTGTGACGCTTTA 58.942 37.500 0.00 0.00 0.00 1.85
1940 2441 3.880490 TCCTGTAAACATTGTGACGCTTT 59.120 39.130 0.00 0.00 0.00 3.51
1941 2442 3.472652 TCCTGTAAACATTGTGACGCTT 58.527 40.909 0.00 0.00 0.00 4.68
1942 2443 3.120321 TCCTGTAAACATTGTGACGCT 57.880 42.857 0.00 0.00 0.00 5.07
1943 2444 3.551551 GTTCCTGTAAACATTGTGACGC 58.448 45.455 0.00 0.00 0.00 5.19
1944 2445 3.491639 TCGTTCCTGTAAACATTGTGACG 59.508 43.478 0.00 0.00 0.00 4.35
1945 2446 5.412526 TTCGTTCCTGTAAACATTGTGAC 57.587 39.130 0.00 0.00 0.00 3.67
1946 2447 5.818336 TCTTTCGTTCCTGTAAACATTGTGA 59.182 36.000 0.00 0.00 0.00 3.58
1947 2448 6.055231 TCTTTCGTTCCTGTAAACATTGTG 57.945 37.500 0.00 0.00 0.00 3.33
1948 2449 6.687081 TTCTTTCGTTCCTGTAAACATTGT 57.313 33.333 0.00 0.00 0.00 2.71
1949 2450 7.414436 TCTTTCTTTCGTTCCTGTAAACATTG 58.586 34.615 0.00 0.00 0.00 2.82
1950 2451 7.562454 TCTTTCTTTCGTTCCTGTAAACATT 57.438 32.000 0.00 0.00 0.00 2.71
1951 2452 7.661847 AGATCTTTCTTTCGTTCCTGTAAACAT 59.338 33.333 0.00 0.00 0.00 2.71
1952 2453 6.990349 AGATCTTTCTTTCGTTCCTGTAAACA 59.010 34.615 0.00 0.00 0.00 2.83
1953 2454 7.422878 AGATCTTTCTTTCGTTCCTGTAAAC 57.577 36.000 0.00 0.00 0.00 2.01
1954 2455 7.095774 CGAAGATCTTTCTTTCGTTCCTGTAAA 60.096 37.037 9.87 0.00 42.34 2.01
1955 2456 6.365247 CGAAGATCTTTCTTTCGTTCCTGTAA 59.635 38.462 9.87 0.00 42.34 2.41
1956 2457 5.862323 CGAAGATCTTTCTTTCGTTCCTGTA 59.138 40.000 9.87 0.00 42.34 2.74
1957 2458 4.686554 CGAAGATCTTTCTTTCGTTCCTGT 59.313 41.667 9.87 0.00 42.34 4.00
1958 2459 4.092091 CCGAAGATCTTTCTTTCGTTCCTG 59.908 45.833 9.87 0.00 42.34 3.86
1959 2460 4.246458 CCGAAGATCTTTCTTTCGTTCCT 58.754 43.478 9.87 0.00 42.34 3.36
1960 2461 3.371285 CCCGAAGATCTTTCTTTCGTTCC 59.629 47.826 9.87 0.00 42.34 3.62
1961 2462 4.243270 TCCCGAAGATCTTTCTTTCGTTC 58.757 43.478 9.87 0.00 42.34 3.95
1962 2463 4.267349 TCCCGAAGATCTTTCTTTCGTT 57.733 40.909 9.87 0.00 42.34 3.85
1963 2464 3.955650 TCCCGAAGATCTTTCTTTCGT 57.044 42.857 9.87 0.00 42.34 3.85
1964 2465 4.268884 GTCATCCCGAAGATCTTTCTTTCG 59.731 45.833 9.87 8.08 42.34 3.46
1965 2466 4.572795 GGTCATCCCGAAGATCTTTCTTTC 59.427 45.833 9.87 0.00 42.34 2.62
1966 2467 4.226168 AGGTCATCCCGAAGATCTTTCTTT 59.774 41.667 9.87 0.00 42.34 2.52
1967 2468 3.777522 AGGTCATCCCGAAGATCTTTCTT 59.222 43.478 9.87 0.00 44.99 2.52
1968 2469 3.379452 AGGTCATCCCGAAGATCTTTCT 58.621 45.455 9.87 0.00 38.74 2.52
1969 2470 3.828875 AGGTCATCCCGAAGATCTTTC 57.171 47.619 9.87 2.35 38.74 2.62
1970 2471 4.141688 GGTTAGGTCATCCCGAAGATCTTT 60.142 45.833 9.87 0.00 38.74 2.52
1971 2472 3.388350 GGTTAGGTCATCCCGAAGATCTT 59.612 47.826 7.95 7.95 38.74 2.40
1972 2473 2.966516 GGTTAGGTCATCCCGAAGATCT 59.033 50.000 0.00 0.00 38.74 2.75
1973 2474 2.698797 TGGTTAGGTCATCCCGAAGATC 59.301 50.000 0.00 0.00 38.74 2.75
1974 2475 2.759355 TGGTTAGGTCATCCCGAAGAT 58.241 47.619 0.00 0.00 38.74 2.40
1975 2476 2.241281 TGGTTAGGTCATCCCGAAGA 57.759 50.000 0.00 0.00 38.74 2.87
1976 2477 3.007635 GTTTGGTTAGGTCATCCCGAAG 58.992 50.000 0.00 0.00 38.74 3.79
1977 2478 2.372504 TGTTTGGTTAGGTCATCCCGAA 59.627 45.455 0.00 0.00 38.74 4.30
1978 2479 1.979308 TGTTTGGTTAGGTCATCCCGA 59.021 47.619 0.00 0.00 38.74 5.14
1979 2480 2.483014 TGTTTGGTTAGGTCATCCCG 57.517 50.000 0.00 0.00 38.74 5.14
1980 2481 3.023832 CCATGTTTGGTTAGGTCATCCC 58.976 50.000 0.00 0.00 38.30 3.85
1981 2482 2.427095 GCCATGTTTGGTTAGGTCATCC 59.573 50.000 0.00 0.00 45.57 3.51
1982 2483 2.097466 CGCCATGTTTGGTTAGGTCATC 59.903 50.000 0.00 0.00 45.57 2.92
1983 2484 2.091541 CGCCATGTTTGGTTAGGTCAT 58.908 47.619 0.00 0.00 45.57 3.06
1984 2485 1.529226 CGCCATGTTTGGTTAGGTCA 58.471 50.000 0.00 0.00 45.57 4.02
1985 2486 0.808755 CCGCCATGTTTGGTTAGGTC 59.191 55.000 0.00 0.00 45.57 3.85
1986 2487 1.248101 GCCGCCATGTTTGGTTAGGT 61.248 55.000 0.00 0.00 45.57 3.08
1987 2488 1.510844 GCCGCCATGTTTGGTTAGG 59.489 57.895 0.00 0.00 45.57 2.69
1988 2489 1.247419 TGGCCGCCATGTTTGGTTAG 61.247 55.000 8.43 0.00 45.57 2.34
1989 2490 1.228583 TGGCCGCCATGTTTGGTTA 60.229 52.632 8.43 0.00 45.57 2.85
1990 2491 2.522923 TGGCCGCCATGTTTGGTT 60.523 55.556 8.43 0.00 45.57 3.67
1991 2492 3.302344 GTGGCCGCCATGTTTGGT 61.302 61.111 16.96 0.00 45.57 3.67
1992 2493 4.067913 GGTGGCCGCCATGTTTGG 62.068 66.667 30.93 0.00 46.66 3.28
1993 2494 4.067913 GGGTGGCCGCCATGTTTG 62.068 66.667 35.55 0.00 35.28 2.93
2004 2505 3.319198 TTGTCTCTCGGGGGTGGC 61.319 66.667 0.00 0.00 0.00 5.01
2005 2506 1.913762 AGTTGTCTCTCGGGGGTGG 60.914 63.158 0.00 0.00 0.00 4.61
2006 2507 1.293498 CAGTTGTCTCTCGGGGGTG 59.707 63.158 0.00 0.00 0.00 4.61
2007 2508 2.584391 GCAGTTGTCTCTCGGGGGT 61.584 63.158 0.00 0.00 0.00 4.95
2008 2509 1.831652 AAGCAGTTGTCTCTCGGGGG 61.832 60.000 0.00 0.00 0.00 5.40
2009 2510 0.671781 CAAGCAGTTGTCTCTCGGGG 60.672 60.000 0.00 0.00 0.00 5.73
2010 2511 0.034059 ACAAGCAGTTGTCTCTCGGG 59.966 55.000 0.00 0.00 43.88 5.14
2011 2512 1.143305 CACAAGCAGTTGTCTCTCGG 58.857 55.000 0.00 0.00 43.88 4.63
2012 2513 2.140065 TCACAAGCAGTTGTCTCTCG 57.860 50.000 0.00 0.00 43.88 4.04
2013 2514 3.397482 ACATCACAAGCAGTTGTCTCTC 58.603 45.455 0.00 0.00 43.88 3.20
2014 2515 3.482156 ACATCACAAGCAGTTGTCTCT 57.518 42.857 0.00 0.00 43.88 3.10
2015 2516 5.673337 TTAACATCACAAGCAGTTGTCTC 57.327 39.130 0.00 0.00 43.88 3.36
2016 2517 6.639632 AATTAACATCACAAGCAGTTGTCT 57.360 33.333 0.00 0.00 43.88 3.41
2017 2518 6.917477 TCAAATTAACATCACAAGCAGTTGTC 59.083 34.615 0.00 0.00 43.88 3.18
2019 2520 7.878477 ATCAAATTAACATCACAAGCAGTTG 57.122 32.000 0.00 0.00 39.82 3.16
2020 2521 8.891671 AAATCAAATTAACATCACAAGCAGTT 57.108 26.923 0.00 0.00 0.00 3.16
2083 2584 1.568504 TTGATCGAACCTACCCAGCT 58.431 50.000 0.00 0.00 0.00 4.24
2122 2623 0.600255 CTATTAGCGAGCGTTGGGGG 60.600 60.000 0.00 0.00 0.00 5.40
2134 2635 3.124297 GGATTGATGCAGACGCTATTAGC 59.876 47.826 5.56 5.56 39.64 3.09
2142 2643 0.379669 GCCTTGGATTGATGCAGACG 59.620 55.000 0.00 0.00 0.00 4.18
2144 2645 1.758936 CAGCCTTGGATTGATGCAGA 58.241 50.000 0.00 0.00 0.00 4.26
2218 2719 1.264288 GTGCAAGAGGGACGTCTTTTG 59.736 52.381 16.46 14.62 34.38 2.44
2225 2726 2.743928 GCCAGTGCAAGAGGGACG 60.744 66.667 0.00 0.00 43.57 4.79
2246 2747 6.292221 GCAAATACGTACTAGCTTTTCCTAGC 60.292 42.308 0.00 0.00 38.68 3.42
2256 2757 4.369182 AGACATGGCAAATACGTACTAGC 58.631 43.478 0.00 1.62 0.00 3.42
2263 2764 6.040247 TCTACAGTAAGACATGGCAAATACG 58.960 40.000 0.00 1.16 0.00 3.06
2264 2765 8.438676 AATCTACAGTAAGACATGGCAAATAC 57.561 34.615 0.00 0.83 0.00 1.89
2265 2766 8.264347 TGAATCTACAGTAAGACATGGCAAATA 58.736 33.333 0.00 0.00 0.00 1.40
2266 2767 7.112122 TGAATCTACAGTAAGACATGGCAAAT 58.888 34.615 0.00 0.00 0.00 2.32
2299 2800 7.062749 TGTAGTCTCAACAGTTTTAGGATGT 57.937 36.000 0.00 0.00 0.00 3.06
2389 2890 4.464008 AGATATACCACAAGGCCAATGTG 58.536 43.478 26.49 26.49 46.05 3.21
2390 2891 4.796110 AGATATACCACAAGGCCAATGT 57.204 40.909 5.01 7.00 39.06 2.71
2424 2925 8.682710 AGTACGGCAAACACATATCATATTTTT 58.317 29.630 0.00 0.00 0.00 1.94
2425 2926 8.220755 AGTACGGCAAACACATATCATATTTT 57.779 30.769 0.00 0.00 0.00 1.82
2426 2927 7.715249 AGAGTACGGCAAACACATATCATATTT 59.285 33.333 0.00 0.00 0.00 1.40
2427 2928 7.217200 AGAGTACGGCAAACACATATCATATT 58.783 34.615 0.00 0.00 0.00 1.28
2428 2929 6.759272 AGAGTACGGCAAACACATATCATAT 58.241 36.000 0.00 0.00 0.00 1.78
2429 2930 6.156748 AGAGTACGGCAAACACATATCATA 57.843 37.500 0.00 0.00 0.00 2.15
2431 2932 4.465632 AGAGTACGGCAAACACATATCA 57.534 40.909 0.00 0.00 0.00 2.15
2432 2933 5.589192 ACTAGAGTACGGCAAACACATATC 58.411 41.667 0.00 0.00 0.00 1.63
2433 2934 5.593679 ACTAGAGTACGGCAAACACATAT 57.406 39.130 0.00 0.00 0.00 1.78
2434 2935 5.395682 AACTAGAGTACGGCAAACACATA 57.604 39.130 0.00 0.00 0.00 2.29
2435 2936 3.955650 ACTAGAGTACGGCAAACACAT 57.044 42.857 0.00 0.00 0.00 3.21
2436 2937 3.738830 AACTAGAGTACGGCAAACACA 57.261 42.857 0.00 0.00 0.00 3.72
2437 2938 7.816945 TTATAAACTAGAGTACGGCAAACAC 57.183 36.000 0.00 0.00 0.00 3.32
2438 2939 8.090214 ACTTTATAAACTAGAGTACGGCAAACA 58.910 33.333 0.00 0.00 0.00 2.83
2439 2940 8.471361 ACTTTATAAACTAGAGTACGGCAAAC 57.529 34.615 0.00 0.00 0.00 2.93
2440 2941 9.492973 AAACTTTATAAACTAGAGTACGGCAAA 57.507 29.630 0.00 0.00 0.00 3.68
2441 2942 9.492973 AAAACTTTATAAACTAGAGTACGGCAA 57.507 29.630 0.00 0.00 0.00 4.52
2442 2943 9.492973 AAAAACTTTATAAACTAGAGTACGGCA 57.507 29.630 0.00 0.00 0.00 5.69
2443 2944 9.964253 GAAAAACTTTATAAACTAGAGTACGGC 57.036 33.333 0.00 0.00 0.00 5.68
2492 2993 8.915036 CCTCATACTCTAGTTTGTGGTATAAGT 58.085 37.037 11.31 0.00 36.54 2.24
2494 2995 7.343574 TGCCTCATACTCTAGTTTGTGGTATAA 59.656 37.037 17.29 4.96 40.39 0.98
2496 2997 5.661312 TGCCTCATACTCTAGTTTGTGGTAT 59.339 40.000 17.29 0.00 40.39 2.73
2497 2998 5.020795 TGCCTCATACTCTAGTTTGTGGTA 58.979 41.667 17.29 12.82 40.39 3.25
2498 2999 3.838317 TGCCTCATACTCTAGTTTGTGGT 59.162 43.478 17.29 0.00 40.39 4.16
2499 3000 4.471904 TGCCTCATACTCTAGTTTGTGG 57.528 45.455 13.87 13.87 40.85 4.17
2500 3001 4.272018 GCATGCCTCATACTCTAGTTTGTG 59.728 45.833 6.36 0.00 0.00 3.33
2501 3002 4.446371 GCATGCCTCATACTCTAGTTTGT 58.554 43.478 6.36 0.00 0.00 2.83
2502 3003 3.492383 CGCATGCCTCATACTCTAGTTTG 59.508 47.826 13.15 0.00 0.00 2.93
2503 3004 3.133003 ACGCATGCCTCATACTCTAGTTT 59.867 43.478 13.15 0.00 0.00 2.66
2505 3006 2.311463 ACGCATGCCTCATACTCTAGT 58.689 47.619 13.15 0.00 0.00 2.57
2506 3007 3.504134 AGTACGCATGCCTCATACTCTAG 59.496 47.826 13.15 0.00 0.00 2.43
2508 3009 2.294791 GAGTACGCATGCCTCATACTCT 59.705 50.000 24.73 10.64 39.01 3.24
2509 3010 2.294791 AGAGTACGCATGCCTCATACTC 59.705 50.000 24.68 24.68 41.29 2.59
2524 3625 8.560374 GTGGATTAAGATATGCCAAAAGAGTAC 58.440 37.037 0.00 0.00 0.00 2.73
2526 3627 7.118723 TGTGGATTAAGATATGCCAAAAGAGT 58.881 34.615 0.00 0.00 0.00 3.24
2527 3628 7.572523 TGTGGATTAAGATATGCCAAAAGAG 57.427 36.000 0.00 0.00 0.00 2.85
2529 3630 9.683069 GTTATGTGGATTAAGATATGCCAAAAG 57.317 33.333 0.00 0.00 0.00 2.27
2586 3692 2.004583 TCAGTACGCCACTACAATGC 57.995 50.000 0.00 0.00 34.98 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.