Multiple sequence alignment - TraesCS3B01G611900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G611900 chr3B 100.000 2243 0 0 1 2243 829350919 829348677 0.000000e+00 4143.0
1 TraesCS3B01G611900 chr3D 86.088 1567 128 32 1 1513 611659219 611657689 0.000000e+00 1604.0
2 TraesCS3B01G611900 chr3D 88.259 247 12 4 1747 1991 611657691 611657460 1.700000e-71 279.0
3 TraesCS3B01G611900 chr3A 89.754 1259 82 14 1 1232 746408166 746406928 0.000000e+00 1567.0
4 TraesCS3B01G611900 chr3A 93.056 144 9 1 2101 2243 297379627 297379484 2.260000e-50 209.0
5 TraesCS3B01G611900 chr7B 81.988 483 38 24 711 1171 23246522 23246977 4.550000e-97 364.0
6 TraesCS3B01G611900 chr7B 80.479 292 19 19 339 610 23246173 23246446 2.940000e-44 189.0
7 TraesCS3B01G611900 chr7B 98.305 59 1 0 1439 1497 23247197 23247255 1.100000e-18 104.0
8 TraesCS3B01G611900 chr7B 89.189 74 3 4 1976 2045 748418828 748418756 1.100000e-13 87.9
9 TraesCS3B01G611900 chr7A 96.104 154 6 0 217 370 519563949 519564102 3.700000e-63 252.0
10 TraesCS3B01G611900 chr2A 96.377 138 5 0 229 366 656239007 656238870 6.230000e-56 228.0
11 TraesCS3B01G611900 chr7D 80.612 294 20 15 339 612 590672999 590672723 2.270000e-45 193.0
12 TraesCS3B01G611900 chr2B 90.278 144 13 1 2101 2243 225848995 225849138 1.060000e-43 187.0
13 TraesCS3B01G611900 chr2B 91.429 70 5 1 1977 2045 403101716 403101647 6.590000e-16 95.3
14 TraesCS3B01G611900 chr6A 88.194 144 10 6 2101 2243 32892781 32892644 4.960000e-37 165.0
15 TraesCS3B01G611900 chr1A 96.629 89 3 0 282 370 534024123 534024035 4.990000e-32 148.0
16 TraesCS3B01G611900 chr4D 91.429 70 2 3 1979 2045 64547740 64547672 2.370000e-15 93.5
17 TraesCS3B01G611900 chr4B 92.424 66 4 1 1981 2045 538218852 538218787 2.370000e-15 93.5
18 TraesCS3B01G611900 chr4B 91.176 68 5 1 1979 2045 373996319 373996252 8.530000e-15 91.6
19 TraesCS3B01G611900 chr1B 93.750 64 1 2 1985 2045 393748500 393748437 2.370000e-15 93.5
20 TraesCS3B01G611900 chr1B 92.308 65 4 1 1982 2045 645360940 645361004 8.530000e-15 91.6
21 TraesCS3B01G611900 chr5B 90.141 71 6 1 1976 2045 370044300 370044230 8.530000e-15 91.6
22 TraesCS3B01G611900 chr1D 92.308 65 4 1 1982 2045 188761760 188761824 8.530000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G611900 chr3B 829348677 829350919 2242 True 4143.0 4143 100.0000 1 2243 1 chr3B.!!$R1 2242
1 TraesCS3B01G611900 chr3D 611657460 611659219 1759 True 941.5 1604 87.1735 1 1991 2 chr3D.!!$R1 1990
2 TraesCS3B01G611900 chr3A 746406928 746408166 1238 True 1567.0 1567 89.7540 1 1232 1 chr3A.!!$R2 1231
3 TraesCS3B01G611900 chr7B 23246173 23247255 1082 False 219.0 364 86.9240 339 1497 3 chr7B.!!$F1 1158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 373 0.040794 ACCTTCACGGCTAGGTAGGT 59.959 55.0 3.15 0.0 42.87 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2165 0.035056 AATTCTTGGAGACGGCCCTG 60.035 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.438744 CGCATCCAAACAAATAGGGAACTC 60.439 45.833 0.00 0.00 43.67 3.01
73 74 5.597806 TCTAGAAGCTTCGTTGAGTTTCAA 58.402 37.500 20.43 0.00 38.76 2.69
85 86 8.393395 TCGTTGAGTTTCAAATTTCTTTTCAG 57.607 30.769 0.00 0.00 38.22 3.02
106 107 2.794631 GCAATTGTTTCGGCGGGATTAG 60.795 50.000 7.21 0.00 0.00 1.73
135 136 2.181975 CAATCCCAGCCCTTCATGTTT 58.818 47.619 0.00 0.00 0.00 2.83
286 288 2.027653 GCAGGACTAGAAGGAAGCTTGT 60.028 50.000 2.10 0.00 0.00 3.16
305 307 6.428159 AGCTTGTTCGTTTACTTCATCTTCAT 59.572 34.615 0.00 0.00 0.00 2.57
370 372 0.460311 CACCTTCACGGCTAGGTAGG 59.540 60.000 4.57 0.00 42.81 3.18
371 373 0.040794 ACCTTCACGGCTAGGTAGGT 59.959 55.000 3.15 0.00 42.87 3.08
372 374 1.285962 ACCTTCACGGCTAGGTAGGTA 59.714 52.381 3.15 0.00 42.87 3.08
373 375 2.291800 ACCTTCACGGCTAGGTAGGTAA 60.292 50.000 3.15 0.00 42.87 2.85
422 428 4.940046 ACTCACCTTGTTGCAATCTATCAG 59.060 41.667 0.59 0.00 0.00 2.90
438 444 2.188062 TCAGGGCCGAAACGTTTATT 57.812 45.000 14.65 0.00 0.00 1.40
484 500 5.130975 TGTGCCTCTGTAGTTTATCCATGAT 59.869 40.000 0.00 0.00 0.00 2.45
485 501 5.468072 GTGCCTCTGTAGTTTATCCATGATG 59.532 44.000 0.00 0.00 0.00 3.07
486 502 4.999950 GCCTCTGTAGTTTATCCATGATGG 59.000 45.833 4.74 4.74 39.43 3.51
527 543 6.824958 AATCTGGCCTCCACTTATTTAGTA 57.175 37.500 3.32 0.00 34.56 1.82
638 664 6.623767 GCCTACCTTTGTCATTCTTTGTCATC 60.624 42.308 0.00 0.00 0.00 2.92
680 709 7.364585 GGTTGATATCAATCTCTCCAGGATAGG 60.365 44.444 20.65 0.00 38.24 2.57
705 734 7.041984 GGTCGATCAGATGGGTTATTTTTACTC 60.042 40.741 0.00 0.00 0.00 2.59
721 761 6.817270 TTTTACTCGAATACGTTAGGATGC 57.183 37.500 0.00 0.00 40.69 3.91
739 779 4.456222 GGATGCTCATTCTCTTGATCATGG 59.544 45.833 8.60 0.00 33.77 3.66
823 867 4.453136 ACCATGTAGTCGTTTTTATTGCGT 59.547 37.500 0.00 0.00 0.00 5.24
978 1059 4.023726 ACAGGTAGAGAAGAGACGAGTT 57.976 45.455 0.00 0.00 0.00 3.01
984 1065 5.521372 GGTAGAGAAGAGACGAGTTAGAGAC 59.479 48.000 0.00 0.00 0.00 3.36
989 1070 3.264104 AGAGACGAGTTAGAGACGGAAG 58.736 50.000 0.00 0.00 0.00 3.46
1011 1092 1.747745 GGCCACCATGGACGTTACC 60.748 63.158 21.47 6.98 40.96 2.85
1022 1103 1.606224 GGACGTTACCTTTGAGGCGAA 60.606 52.381 0.00 0.00 39.63 4.70
1195 1276 2.754465 ACGGTATCATACAGGGGTCAA 58.246 47.619 0.00 0.00 0.00 3.18
1206 1287 2.044946 GGGTCAAGCATCCGCCTT 60.045 61.111 0.00 0.00 39.83 4.35
1209 1290 0.960364 GGTCAAGCATCCGCCTTGAA 60.960 55.000 5.51 0.00 37.17 2.69
1214 1295 2.042831 GCATCCGCCTTGAACTGCT 61.043 57.895 0.00 0.00 0.00 4.24
1215 1296 1.798735 CATCCGCCTTGAACTGCTG 59.201 57.895 0.00 0.00 0.00 4.41
1233 1314 2.161855 CTGGCAAGCTTGACCATGTTA 58.838 47.619 30.17 13.62 34.48 2.41
1264 1353 1.077089 TGTGCGTTTCGTGTTGTCGA 61.077 50.000 0.00 0.00 38.08 4.20
1278 1367 0.756294 TGTCGACAAGGAGGAAGCAA 59.244 50.000 17.62 0.00 0.00 3.91
1296 1385 6.935208 GGAAGCAACGGATAGGAATAATAACT 59.065 38.462 0.00 0.00 0.00 2.24
1298 1387 7.964604 AGCAACGGATAGGAATAATAACTTC 57.035 36.000 0.00 0.00 0.00 3.01
1300 1389 7.441458 AGCAACGGATAGGAATAATAACTTCAC 59.559 37.037 0.00 0.00 0.00 3.18
1301 1390 7.307811 GCAACGGATAGGAATAATAACTTCACC 60.308 40.741 0.00 0.00 0.00 4.02
1302 1391 7.369551 ACGGATAGGAATAATAACTTCACCA 57.630 36.000 0.00 0.00 0.00 4.17
1303 1392 7.215085 ACGGATAGGAATAATAACTTCACCAC 58.785 38.462 0.00 0.00 0.00 4.16
1354 1450 8.162878 TGTACTATACTGCTCCAAGTATGTAC 57.837 38.462 18.12 18.12 42.15 2.90
1355 1451 6.315091 ACTATACTGCTCCAAGTATGTACG 57.685 41.667 7.04 0.00 42.15 3.67
1356 1452 2.961526 ACTGCTCCAAGTATGTACGG 57.038 50.000 0.00 0.00 0.00 4.02
1357 1453 2.453521 ACTGCTCCAAGTATGTACGGA 58.546 47.619 0.00 0.00 0.00 4.69
1372 1473 8.915036 AGTATGTACGGAATAAATCAGAGTCTT 58.085 33.333 0.00 0.00 0.00 3.01
1483 1601 7.174946 TCGAGTAATTCCTTGCATTTCTTCTTT 59.825 33.333 0.00 0.00 0.00 2.52
1502 1620 3.435105 TTTGTTTTGACGATGCTTGCT 57.565 38.095 0.00 0.00 0.00 3.91
1510 1628 0.179134 ACGATGCTTGCTCGTCTACC 60.179 55.000 11.92 0.00 45.63 3.18
1511 1629 0.179137 CGATGCTTGCTCGTCTACCA 60.179 55.000 0.00 0.00 0.00 3.25
1512 1630 1.735700 CGATGCTTGCTCGTCTACCAA 60.736 52.381 0.00 0.00 0.00 3.67
1513 1631 2.346803 GATGCTTGCTCGTCTACCAAA 58.653 47.619 0.00 0.00 0.00 3.28
1514 1632 2.248280 TGCTTGCTCGTCTACCAAAA 57.752 45.000 0.00 0.00 0.00 2.44
1515 1633 2.778299 TGCTTGCTCGTCTACCAAAAT 58.222 42.857 0.00 0.00 0.00 1.82
1516 1634 3.146066 TGCTTGCTCGTCTACCAAAATT 58.854 40.909 0.00 0.00 0.00 1.82
1517 1635 3.568007 TGCTTGCTCGTCTACCAAAATTT 59.432 39.130 0.00 0.00 0.00 1.82
1518 1636 4.037446 TGCTTGCTCGTCTACCAAAATTTT 59.963 37.500 0.00 0.00 0.00 1.82
1519 1637 4.617223 GCTTGCTCGTCTACCAAAATTTTC 59.383 41.667 0.00 0.00 0.00 2.29
1520 1638 5.562890 GCTTGCTCGTCTACCAAAATTTTCT 60.563 40.000 0.00 0.00 0.00 2.52
1521 1639 6.385649 TTGCTCGTCTACCAAAATTTTCTT 57.614 33.333 0.00 0.00 0.00 2.52
1522 1640 5.997385 TGCTCGTCTACCAAAATTTTCTTC 58.003 37.500 0.00 0.00 0.00 2.87
1523 1641 5.048991 TGCTCGTCTACCAAAATTTTCTTCC 60.049 40.000 0.00 0.00 0.00 3.46
1524 1642 5.181433 GCTCGTCTACCAAAATTTTCTTCCT 59.819 40.000 0.00 0.00 0.00 3.36
1525 1643 6.370718 GCTCGTCTACCAAAATTTTCTTCCTA 59.629 38.462 0.00 0.00 0.00 2.94
1526 1644 7.094933 GCTCGTCTACCAAAATTTTCTTCCTAA 60.095 37.037 0.00 0.00 0.00 2.69
1527 1645 8.319143 TCGTCTACCAAAATTTTCTTCCTAAG 57.681 34.615 0.00 0.00 0.00 2.18
1528 1646 7.021790 CGTCTACCAAAATTTTCTTCCTAAGC 58.978 38.462 0.00 0.00 0.00 3.09
1529 1647 7.094762 CGTCTACCAAAATTTTCTTCCTAAGCT 60.095 37.037 0.00 0.00 0.00 3.74
1530 1648 8.237949 GTCTACCAAAATTTTCTTCCTAAGCTC 58.762 37.037 0.00 0.00 0.00 4.09
1531 1649 6.346477 ACCAAAATTTTCTTCCTAAGCTCC 57.654 37.500 0.00 0.00 0.00 4.70
1532 1650 5.838521 ACCAAAATTTTCTTCCTAAGCTCCA 59.161 36.000 0.00 0.00 0.00 3.86
1533 1651 6.326323 ACCAAAATTTTCTTCCTAAGCTCCAA 59.674 34.615 0.00 0.00 0.00 3.53
1534 1652 7.016563 ACCAAAATTTTCTTCCTAAGCTCCAAT 59.983 33.333 0.00 0.00 0.00 3.16
1535 1653 7.332678 CCAAAATTTTCTTCCTAAGCTCCAATG 59.667 37.037 0.00 0.00 0.00 2.82
1536 1654 5.588958 ATTTTCTTCCTAAGCTCCAATGC 57.411 39.130 0.00 0.00 0.00 3.56
1537 1655 2.315925 TCTTCCTAAGCTCCAATGCG 57.684 50.000 0.00 0.00 38.13 4.73
1538 1656 1.134401 TCTTCCTAAGCTCCAATGCGG 60.134 52.381 0.00 0.00 38.13 5.69
1539 1657 0.748005 TTCCTAAGCTCCAATGCGGC 60.748 55.000 0.00 0.00 38.13 6.53
1540 1658 2.189499 CCTAAGCTCCAATGCGGCC 61.189 63.158 0.00 0.00 38.13 6.13
1541 1659 1.153086 CTAAGCTCCAATGCGGCCT 60.153 57.895 0.00 0.00 38.13 5.19
1542 1660 0.749454 CTAAGCTCCAATGCGGCCTT 60.749 55.000 0.00 0.00 38.13 4.35
1543 1661 0.748005 TAAGCTCCAATGCGGCCTTC 60.748 55.000 0.00 0.00 38.13 3.46
1544 1662 3.521796 GCTCCAATGCGGCCTTCC 61.522 66.667 0.00 0.00 33.14 3.46
1545 1663 2.830370 CTCCAATGCGGCCTTCCC 60.830 66.667 0.00 0.00 33.14 3.97
1546 1664 4.440829 TCCAATGCGGCCTTCCCC 62.441 66.667 0.00 0.00 33.14 4.81
1547 1665 4.447342 CCAATGCGGCCTTCCCCT 62.447 66.667 0.00 0.00 0.00 4.79
1548 1666 3.142838 CAATGCGGCCTTCCCCTG 61.143 66.667 0.00 0.00 0.00 4.45
1554 1672 4.811364 GGCCTTCCCCTGCTGCTC 62.811 72.222 0.00 0.00 0.00 4.26
1555 1673 4.811364 GCCTTCCCCTGCTGCTCC 62.811 72.222 0.00 0.00 0.00 4.70
1556 1674 3.333219 CCTTCCCCTGCTGCTCCA 61.333 66.667 0.00 0.00 0.00 3.86
1557 1675 2.759114 CTTCCCCTGCTGCTCCAA 59.241 61.111 0.00 0.00 0.00 3.53
1558 1676 1.305623 CTTCCCCTGCTGCTCCAAT 59.694 57.895 0.00 0.00 0.00 3.16
1559 1677 1.000521 TTCCCCTGCTGCTCCAATG 60.001 57.895 0.00 0.00 0.00 2.82
1560 1678 2.441532 CCCCTGCTGCTCCAATGG 60.442 66.667 0.00 0.00 0.00 3.16
1561 1679 2.679092 CCCTGCTGCTCCAATGGA 59.321 61.111 0.48 0.48 0.00 3.41
1562 1680 1.751927 CCCTGCTGCTCCAATGGAC 60.752 63.158 0.00 0.00 0.00 4.02
1563 1681 1.001764 CCTGCTGCTCCAATGGACA 60.002 57.895 0.00 1.02 0.00 4.02
1564 1682 1.310933 CCTGCTGCTCCAATGGACAC 61.311 60.000 0.00 0.00 0.00 3.67
1565 1683 0.607217 CTGCTGCTCCAATGGACACA 60.607 55.000 0.00 0.00 0.00 3.72
1566 1684 0.607217 TGCTGCTCCAATGGACACAG 60.607 55.000 18.48 18.48 35.25 3.66
1567 1685 1.930908 GCTGCTCCAATGGACACAGC 61.931 60.000 26.85 26.85 44.21 4.40
1568 1686 1.642037 CTGCTCCAATGGACACAGCG 61.642 60.000 12.88 0.00 28.39 5.18
1569 1687 2.401766 GCTCCAATGGACACAGCGG 61.402 63.158 0.00 0.00 0.00 5.52
1570 1688 1.296392 CTCCAATGGACACAGCGGA 59.704 57.895 0.00 0.00 31.95 5.54
1571 1689 1.003839 TCCAATGGACACAGCGGAC 60.004 57.895 0.00 0.00 0.00 4.79
1572 1690 2.040544 CCAATGGACACAGCGGACC 61.041 63.158 0.00 0.00 0.00 4.46
1573 1691 2.047274 AATGGACACAGCGGACCG 60.047 61.111 10.29 10.29 0.00 4.79
1574 1692 2.579657 AATGGACACAGCGGACCGA 61.580 57.895 20.50 0.00 0.00 4.69
1575 1693 2.107041 AATGGACACAGCGGACCGAA 62.107 55.000 20.50 0.00 0.00 4.30
1576 1694 2.432628 GGACACAGCGGACCGAAG 60.433 66.667 20.50 11.43 0.00 3.79
1577 1695 2.649034 GACACAGCGGACCGAAGA 59.351 61.111 20.50 0.00 0.00 2.87
1578 1696 1.215647 GACACAGCGGACCGAAGAT 59.784 57.895 20.50 2.78 0.00 2.40
1579 1697 1.078759 GACACAGCGGACCGAAGATG 61.079 60.000 20.50 12.32 0.00 2.90
1580 1698 2.125512 ACAGCGGACCGAAGATGC 60.126 61.111 20.50 0.00 0.00 3.91
1581 1699 2.125552 CAGCGGACCGAAGATGCA 60.126 61.111 20.50 0.00 0.00 3.96
1582 1700 2.169789 CAGCGGACCGAAGATGCAG 61.170 63.158 20.50 0.00 0.00 4.41
1583 1701 2.892425 GCGGACCGAAGATGCAGG 60.892 66.667 20.50 0.00 0.00 4.85
1584 1702 2.892425 CGGACCGAAGATGCAGGC 60.892 66.667 8.64 0.00 0.00 4.85
1585 1703 2.514824 GGACCGAAGATGCAGGCC 60.515 66.667 0.00 0.00 0.00 5.19
1586 1704 2.514824 GACCGAAGATGCAGGCCC 60.515 66.667 0.00 0.00 0.00 5.80
1587 1705 3.011517 ACCGAAGATGCAGGCCCT 61.012 61.111 0.00 0.00 0.00 5.19
1588 1706 2.273449 CCGAAGATGCAGGCCCTT 59.727 61.111 0.00 0.00 0.00 3.95
1589 1707 1.821332 CCGAAGATGCAGGCCCTTC 60.821 63.158 0.00 3.62 34.52 3.46
1590 1708 1.222936 CGAAGATGCAGGCCCTTCT 59.777 57.895 14.39 4.77 35.42 2.85
1591 1709 0.393537 CGAAGATGCAGGCCCTTCTT 60.394 55.000 14.39 11.80 35.42 2.52
1592 1710 1.387539 GAAGATGCAGGCCCTTCTTC 58.612 55.000 16.54 16.54 38.21 2.87
1593 1711 0.393537 AAGATGCAGGCCCTTCTTCG 60.394 55.000 0.00 0.00 0.00 3.79
1594 1712 1.078143 GATGCAGGCCCTTCTTCGT 60.078 57.895 0.00 0.00 0.00 3.85
1595 1713 1.078143 ATGCAGGCCCTTCTTCGTC 60.078 57.895 0.00 0.00 0.00 4.20
1596 1714 2.815647 GCAGGCCCTTCTTCGTCG 60.816 66.667 0.00 0.00 0.00 5.12
1597 1715 2.657237 CAGGCCCTTCTTCGTCGT 59.343 61.111 0.00 0.00 0.00 4.34
1598 1716 1.738099 CAGGCCCTTCTTCGTCGTG 60.738 63.158 0.00 0.00 0.00 4.35
1599 1717 2.434359 GGCCCTTCTTCGTCGTGG 60.434 66.667 0.00 0.00 0.00 4.94
1600 1718 3.119096 GCCCTTCTTCGTCGTGGC 61.119 66.667 0.00 0.00 0.00 5.01
1601 1719 2.342279 CCCTTCTTCGTCGTGGCA 59.658 61.111 0.00 0.00 0.00 4.92
1602 1720 1.738099 CCCTTCTTCGTCGTGGCAG 60.738 63.158 0.00 0.00 0.00 4.85
1603 1721 2.383527 CCTTCTTCGTCGTGGCAGC 61.384 63.158 0.00 0.00 0.00 5.25
1604 1722 2.357034 TTCTTCGTCGTGGCAGCC 60.357 61.111 3.66 3.66 0.00 4.85
1605 1723 3.158537 TTCTTCGTCGTGGCAGCCA 62.159 57.895 11.22 11.22 0.00 4.75
1620 1738 4.033776 CCACTGGCCATGTCCCGT 62.034 66.667 5.51 0.00 0.00 5.28
1621 1739 2.436646 CACTGGCCATGTCCCGTC 60.437 66.667 5.51 0.00 0.00 4.79
1622 1740 2.607750 ACTGGCCATGTCCCGTCT 60.608 61.111 5.51 0.00 0.00 4.18
1623 1741 2.224159 ACTGGCCATGTCCCGTCTT 61.224 57.895 5.51 0.00 0.00 3.01
1624 1742 1.746615 CTGGCCATGTCCCGTCTTG 60.747 63.158 5.51 0.00 0.00 3.02
1625 1743 3.134127 GGCCATGTCCCGTCTTGC 61.134 66.667 0.00 0.00 0.00 4.01
1626 1744 3.134127 GCCATGTCCCGTCTTGCC 61.134 66.667 0.00 0.00 0.00 4.52
1627 1745 2.819595 CCATGTCCCGTCTTGCCG 60.820 66.667 0.00 0.00 0.00 5.69
1628 1746 3.499737 CATGTCCCGTCTTGCCGC 61.500 66.667 0.00 0.00 0.00 6.53
1629 1747 3.706373 ATGTCCCGTCTTGCCGCT 61.706 61.111 0.00 0.00 0.00 5.52
1630 1748 3.958147 ATGTCCCGTCTTGCCGCTG 62.958 63.158 0.00 0.00 0.00 5.18
1635 1753 3.782244 CGTCTTGCCGCTGCTCAC 61.782 66.667 0.70 0.00 38.71 3.51
1636 1754 3.426568 GTCTTGCCGCTGCTCACC 61.427 66.667 0.70 0.00 38.71 4.02
1643 1761 2.125552 CGCTGCTCACCGGAATCA 60.126 61.111 9.46 0.00 0.00 2.57
1644 1762 1.741401 CGCTGCTCACCGGAATCAA 60.741 57.895 9.46 0.00 0.00 2.57
1645 1763 1.699656 CGCTGCTCACCGGAATCAAG 61.700 60.000 9.46 0.54 0.00 3.02
1646 1764 0.674895 GCTGCTCACCGGAATCAAGT 60.675 55.000 9.46 0.00 0.00 3.16
1647 1765 1.081892 CTGCTCACCGGAATCAAGTG 58.918 55.000 9.46 0.00 0.00 3.16
1648 1766 0.396435 TGCTCACCGGAATCAAGTGT 59.604 50.000 9.46 0.00 33.21 3.55
1649 1767 1.621317 TGCTCACCGGAATCAAGTGTA 59.379 47.619 9.46 0.00 33.21 2.90
1650 1768 2.037902 TGCTCACCGGAATCAAGTGTAA 59.962 45.455 9.46 0.00 33.21 2.41
1651 1769 3.270877 GCTCACCGGAATCAAGTGTAAT 58.729 45.455 9.46 0.00 33.21 1.89
1652 1770 3.689649 GCTCACCGGAATCAAGTGTAATT 59.310 43.478 9.46 0.00 33.21 1.40
1653 1771 4.156008 GCTCACCGGAATCAAGTGTAATTT 59.844 41.667 9.46 0.00 33.21 1.82
1654 1772 5.353123 GCTCACCGGAATCAAGTGTAATTTA 59.647 40.000 9.46 0.00 33.21 1.40
1655 1773 6.456988 GCTCACCGGAATCAAGTGTAATTTAG 60.457 42.308 9.46 0.00 33.21 1.85
1656 1774 6.469410 TCACCGGAATCAAGTGTAATTTAGT 58.531 36.000 9.46 0.00 33.21 2.24
1657 1775 6.370442 TCACCGGAATCAAGTGTAATTTAGTG 59.630 38.462 9.46 0.00 33.21 2.74
1658 1776 6.370442 CACCGGAATCAAGTGTAATTTAGTGA 59.630 38.462 9.46 0.00 0.00 3.41
1659 1777 6.938030 ACCGGAATCAAGTGTAATTTAGTGAA 59.062 34.615 9.46 0.00 0.00 3.18
1660 1778 7.610305 ACCGGAATCAAGTGTAATTTAGTGAAT 59.390 33.333 9.46 0.00 0.00 2.57
1661 1779 8.458843 CCGGAATCAAGTGTAATTTAGTGAATT 58.541 33.333 0.00 0.00 40.88 2.17
1662 1780 9.277565 CGGAATCAAGTGTAATTTAGTGAATTG 57.722 33.333 3.25 0.00 38.40 2.32
1667 1785 9.114952 TCAAGTGTAATTTAGTGAATTGACACA 57.885 29.630 21.24 10.68 40.26 3.72
1668 1786 9.385902 CAAGTGTAATTTAGTGAATTGACACAG 57.614 33.333 21.24 14.95 40.26 3.66
1669 1787 8.099364 AGTGTAATTTAGTGAATTGACACAGG 57.901 34.615 21.24 0.00 40.26 4.00
1670 1788 7.174946 AGTGTAATTTAGTGAATTGACACAGGG 59.825 37.037 21.24 0.00 40.26 4.45
1671 1789 7.174253 GTGTAATTTAGTGAATTGACACAGGGA 59.826 37.037 17.90 0.00 42.45 4.20
1672 1790 7.721842 TGTAATTTAGTGAATTGACACAGGGAA 59.278 33.333 3.25 0.00 42.45 3.97
1673 1791 7.595819 AATTTAGTGAATTGACACAGGGAAA 57.404 32.000 0.00 0.00 42.45 3.13
1674 1792 6.633500 TTTAGTGAATTGACACAGGGAAAG 57.367 37.500 0.00 0.00 42.45 2.62
1675 1793 3.490348 AGTGAATTGACACAGGGAAAGG 58.510 45.455 0.00 0.00 42.45 3.11
1676 1794 2.558359 GTGAATTGACACAGGGAAAGGG 59.442 50.000 0.00 0.00 40.11 3.95
1677 1795 2.171003 GAATTGACACAGGGAAAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
1678 1796 0.251787 ATTGACACAGGGAAAGGGGC 60.252 55.000 0.00 0.00 0.00 5.80
1679 1797 1.650242 TTGACACAGGGAAAGGGGCA 61.650 55.000 0.00 0.00 0.00 5.36
1680 1798 1.152830 GACACAGGGAAAGGGGCAA 59.847 57.895 0.00 0.00 0.00 4.52
1681 1799 1.152546 ACACAGGGAAAGGGGCAAC 60.153 57.895 0.00 0.00 0.00 4.17
1682 1800 1.152567 CACAGGGAAAGGGGCAACA 60.153 57.895 0.00 0.00 39.74 3.33
1683 1801 1.153756 ACAGGGAAAGGGGCAACAG 59.846 57.895 0.00 0.00 39.74 3.16
1684 1802 1.607467 CAGGGAAAGGGGCAACAGG 60.607 63.158 0.00 0.00 39.74 4.00
1685 1803 2.091283 AGGGAAAGGGGCAACAGGT 61.091 57.895 0.00 0.00 39.74 4.00
1686 1804 0.774491 AGGGAAAGGGGCAACAGGTA 60.774 55.000 0.00 0.00 39.74 3.08
1687 1805 0.323451 GGGAAAGGGGCAACAGGTAG 60.323 60.000 0.00 0.00 39.74 3.18
1688 1806 0.696501 GGAAAGGGGCAACAGGTAGA 59.303 55.000 0.00 0.00 39.74 2.59
1689 1807 1.074889 GGAAAGGGGCAACAGGTAGAA 59.925 52.381 0.00 0.00 39.74 2.10
1690 1808 2.437413 GAAAGGGGCAACAGGTAGAAG 58.563 52.381 0.00 0.00 39.74 2.85
1691 1809 1.742308 AAGGGGCAACAGGTAGAAGA 58.258 50.000 0.00 0.00 39.74 2.87
1692 1810 1.742308 AGGGGCAACAGGTAGAAGAA 58.258 50.000 0.00 0.00 39.74 2.52
1693 1811 1.630878 AGGGGCAACAGGTAGAAGAAG 59.369 52.381 0.00 0.00 39.74 2.85
1694 1812 1.628846 GGGGCAACAGGTAGAAGAAGA 59.371 52.381 0.00 0.00 39.74 2.87
1695 1813 2.615747 GGGGCAACAGGTAGAAGAAGAC 60.616 54.545 0.00 0.00 39.74 3.01
1696 1814 2.303311 GGGCAACAGGTAGAAGAAGACT 59.697 50.000 0.00 0.00 39.74 3.24
1697 1815 3.591023 GGCAACAGGTAGAAGAAGACTC 58.409 50.000 0.00 0.00 0.00 3.36
1698 1816 3.006967 GGCAACAGGTAGAAGAAGACTCA 59.993 47.826 0.00 0.00 0.00 3.41
1699 1817 4.241681 GCAACAGGTAGAAGAAGACTCAG 58.758 47.826 0.00 0.00 0.00 3.35
1700 1818 4.815269 CAACAGGTAGAAGAAGACTCAGG 58.185 47.826 0.00 0.00 0.00 3.86
1701 1819 4.120946 ACAGGTAGAAGAAGACTCAGGT 57.879 45.455 0.00 0.00 0.00 4.00
1702 1820 4.083565 ACAGGTAGAAGAAGACTCAGGTC 58.916 47.826 0.00 0.00 42.41 3.85
1703 1821 4.082845 CAGGTAGAAGAAGACTCAGGTCA 58.917 47.826 0.00 0.00 44.36 4.02
1704 1822 4.082463 CAGGTAGAAGAAGACTCAGGTCAC 60.082 50.000 0.00 0.00 44.36 3.67
1705 1823 3.119779 GGTAGAAGAAGACTCAGGTCACG 60.120 52.174 0.00 0.00 44.36 4.35
1706 1824 2.865079 AGAAGAAGACTCAGGTCACGA 58.135 47.619 0.00 0.00 44.36 4.35
1707 1825 2.817258 AGAAGAAGACTCAGGTCACGAG 59.183 50.000 0.00 0.00 44.36 4.18
1708 1826 0.885196 AGAAGACTCAGGTCACGAGC 59.115 55.000 0.00 0.00 44.36 5.03
1709 1827 0.885196 GAAGACTCAGGTCACGAGCT 59.115 55.000 0.00 0.00 44.36 4.09
1710 1828 2.085320 GAAGACTCAGGTCACGAGCTA 58.915 52.381 0.00 0.00 44.36 3.32
1711 1829 1.455248 AGACTCAGGTCACGAGCTAC 58.545 55.000 0.00 0.00 44.36 3.58
1712 1830 0.452585 GACTCAGGTCACGAGCTACC 59.547 60.000 0.00 0.00 41.75 3.18
1713 1831 0.251209 ACTCAGGTCACGAGCTACCA 60.251 55.000 6.18 0.00 38.30 3.25
1714 1832 1.107114 CTCAGGTCACGAGCTACCAT 58.893 55.000 6.18 0.00 38.30 3.55
1715 1833 0.817654 TCAGGTCACGAGCTACCATG 59.182 55.000 6.18 2.27 38.30 3.66
1716 1834 0.532573 CAGGTCACGAGCTACCATGT 59.467 55.000 6.18 0.00 38.30 3.21
1717 1835 1.066858 CAGGTCACGAGCTACCATGTT 60.067 52.381 6.18 0.00 38.30 2.71
1718 1836 1.623811 AGGTCACGAGCTACCATGTTT 59.376 47.619 6.18 0.00 38.30 2.83
1719 1837 2.000447 GGTCACGAGCTACCATGTTTC 59.000 52.381 0.00 0.00 35.73 2.78
1720 1838 2.000447 GTCACGAGCTACCATGTTTCC 59.000 52.381 0.00 0.00 0.00 3.13
1721 1839 1.899814 TCACGAGCTACCATGTTTCCT 59.100 47.619 0.00 0.00 0.00 3.36
1722 1840 2.301870 TCACGAGCTACCATGTTTCCTT 59.698 45.455 0.00 0.00 0.00 3.36
1723 1841 3.074412 CACGAGCTACCATGTTTCCTTT 58.926 45.455 0.00 0.00 0.00 3.11
1724 1842 3.502211 CACGAGCTACCATGTTTCCTTTT 59.498 43.478 0.00 0.00 0.00 2.27
1725 1843 4.693566 CACGAGCTACCATGTTTCCTTTTA 59.306 41.667 0.00 0.00 0.00 1.52
1726 1844 5.354234 CACGAGCTACCATGTTTCCTTTTAT 59.646 40.000 0.00 0.00 0.00 1.40
1727 1845 5.944007 ACGAGCTACCATGTTTCCTTTTATT 59.056 36.000 0.00 0.00 0.00 1.40
1728 1846 6.093633 ACGAGCTACCATGTTTCCTTTTATTC 59.906 38.462 0.00 0.00 0.00 1.75
1729 1847 6.093495 CGAGCTACCATGTTTCCTTTTATTCA 59.907 38.462 0.00 0.00 0.00 2.57
1730 1848 7.158099 AGCTACCATGTTTCCTTTTATTCAC 57.842 36.000 0.00 0.00 0.00 3.18
1731 1849 6.948309 AGCTACCATGTTTCCTTTTATTCACT 59.052 34.615 0.00 0.00 0.00 3.41
1732 1850 7.121315 AGCTACCATGTTTCCTTTTATTCACTC 59.879 37.037 0.00 0.00 0.00 3.51
1733 1851 7.094377 GCTACCATGTTTCCTTTTATTCACTCA 60.094 37.037 0.00 0.00 0.00 3.41
1734 1852 7.595819 ACCATGTTTCCTTTTATTCACTCAA 57.404 32.000 0.00 0.00 0.00 3.02
1735 1853 8.017418 ACCATGTTTCCTTTTATTCACTCAAA 57.983 30.769 0.00 0.00 0.00 2.69
1736 1854 8.650490 ACCATGTTTCCTTTTATTCACTCAAAT 58.350 29.630 0.00 0.00 0.00 2.32
1753 1871 7.440856 TCACTCAAATAGAAAATGGCAAAAACC 59.559 33.333 0.00 0.00 0.00 3.27
1768 1886 4.692155 GCAAAAACCAGAGAAATGGGATTG 59.308 41.667 0.00 1.38 45.25 2.67
1834 1954 5.217978 TGCCGTTTCCTTTATACCGATAT 57.782 39.130 0.00 0.00 0.00 1.63
1838 1958 6.370718 GCCGTTTCCTTTATACCGATATTCAT 59.629 38.462 0.00 0.00 0.00 2.57
1849 1969 1.825090 GATATTCATGCGCCATCCCA 58.175 50.000 4.18 0.00 0.00 4.37
1856 1976 2.751436 GCGCCATCCCAAAGCTGA 60.751 61.111 0.00 0.00 0.00 4.26
1872 1992 6.205784 CAAAGCTGACGTTTCCTTTTATTCA 58.794 36.000 0.00 0.00 0.00 2.57
1876 1996 5.585500 TGACGTTTCCTTTTATTCAGTCG 57.415 39.130 0.00 0.00 0.00 4.18
1929 2049 4.333095 TGCGTAAATATGTACGTGCCATTT 59.667 37.500 23.06 14.51 46.74 2.32
1930 2050 5.163744 TGCGTAAATATGTACGTGCCATTTT 60.164 36.000 23.06 12.83 46.74 1.82
1931 2051 6.036844 TGCGTAAATATGTACGTGCCATTTTA 59.963 34.615 23.06 12.17 46.74 1.52
1932 2052 7.073265 GCGTAAATATGTACGTGCCATTTTAT 58.927 34.615 23.06 0.00 46.74 1.40
1933 2053 7.059033 GCGTAAATATGTACGTGCCATTTTATG 59.941 37.037 23.06 16.83 46.74 1.90
1934 2054 8.065407 CGTAAATATGTACGTGCCATTTTATGT 58.935 33.333 15.98 1.06 41.51 2.29
1935 2055 9.165014 GTAAATATGTACGTGCCATTTTATGTG 57.835 33.333 15.06 0.00 0.00 3.21
1936 2056 4.630894 ATGTACGTGCCATTTTATGTGG 57.369 40.909 0.00 0.00 39.80 4.17
1937 2057 3.676093 TGTACGTGCCATTTTATGTGGA 58.324 40.909 0.00 0.00 39.12 4.02
1938 2058 4.265893 TGTACGTGCCATTTTATGTGGAT 58.734 39.130 0.00 0.00 39.12 3.41
1939 2059 4.702612 TGTACGTGCCATTTTATGTGGATT 59.297 37.500 0.00 0.00 39.12 3.01
1940 2060 4.108699 ACGTGCCATTTTATGTGGATTG 57.891 40.909 0.00 0.00 39.12 2.67
1941 2061 3.509575 ACGTGCCATTTTATGTGGATTGT 59.490 39.130 0.00 0.00 39.12 2.71
1953 2073 1.072266 TGGATTGTAACTGCCCCACT 58.928 50.000 0.00 0.00 0.00 4.00
1991 2111 8.810652 TGCAATCAAATTCAACTTTTAGTACC 57.189 30.769 0.00 0.00 0.00 3.34
1992 2112 7.870445 TGCAATCAAATTCAACTTTTAGTACCC 59.130 33.333 0.00 0.00 0.00 3.69
1993 2113 7.330946 GCAATCAAATTCAACTTTTAGTACCCC 59.669 37.037 0.00 0.00 0.00 4.95
1994 2114 6.904463 TCAAATTCAACTTTTAGTACCCCC 57.096 37.500 0.00 0.00 0.00 5.40
1995 2115 5.474189 TCAAATTCAACTTTTAGTACCCCCG 59.526 40.000 0.00 0.00 0.00 5.73
1996 2116 4.645863 ATTCAACTTTTAGTACCCCCGT 57.354 40.909 0.00 0.00 0.00 5.28
1997 2117 3.683365 TCAACTTTTAGTACCCCCGTC 57.317 47.619 0.00 0.00 0.00 4.79
1998 2118 2.302733 TCAACTTTTAGTACCCCCGTCC 59.697 50.000 0.00 0.00 0.00 4.79
1999 2119 1.279496 ACTTTTAGTACCCCCGTCCC 58.721 55.000 0.00 0.00 0.00 4.46
2000 2120 1.278537 CTTTTAGTACCCCCGTCCCA 58.721 55.000 0.00 0.00 0.00 4.37
2001 2121 1.629861 CTTTTAGTACCCCCGTCCCAA 59.370 52.381 0.00 0.00 0.00 4.12
2002 2122 1.739750 TTTAGTACCCCCGTCCCAAA 58.260 50.000 0.00 0.00 0.00 3.28
2003 2123 1.739750 TTAGTACCCCCGTCCCAAAA 58.260 50.000 0.00 0.00 0.00 2.44
2004 2124 1.969713 TAGTACCCCCGTCCCAAAAT 58.030 50.000 0.00 0.00 0.00 1.82
2005 2125 1.969713 AGTACCCCCGTCCCAAAATA 58.030 50.000 0.00 0.00 0.00 1.40
2006 2126 2.277317 AGTACCCCCGTCCCAAAATAA 58.723 47.619 0.00 0.00 0.00 1.40
2007 2127 2.240414 AGTACCCCCGTCCCAAAATAAG 59.760 50.000 0.00 0.00 0.00 1.73
2008 2128 1.078115 ACCCCCGTCCCAAAATAAGT 58.922 50.000 0.00 0.00 0.00 2.24
2009 2129 1.272258 ACCCCCGTCCCAAAATAAGTG 60.272 52.381 0.00 0.00 0.00 3.16
2010 2130 1.272258 CCCCCGTCCCAAAATAAGTGT 60.272 52.381 0.00 0.00 0.00 3.55
2011 2131 2.089201 CCCCGTCCCAAAATAAGTGTC 58.911 52.381 0.00 0.00 0.00 3.67
2012 2132 2.290705 CCCCGTCCCAAAATAAGTGTCT 60.291 50.000 0.00 0.00 0.00 3.41
2013 2133 3.418047 CCCGTCCCAAAATAAGTGTCTT 58.582 45.455 0.00 0.00 0.00 3.01
2014 2134 3.190535 CCCGTCCCAAAATAAGTGTCTTG 59.809 47.826 0.00 0.00 0.00 3.02
2015 2135 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2016 2136 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2017 2137 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2018 2138 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2019 2139 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2020 2140 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2021 2141 6.430000 TCCCAAAATAAGTGTCTTGAGCTTAC 59.570 38.462 0.00 0.00 0.00 2.34
2022 2142 6.431234 CCCAAAATAAGTGTCTTGAGCTTACT 59.569 38.462 0.00 0.00 0.00 2.24
2023 2143 7.606456 CCCAAAATAAGTGTCTTGAGCTTACTA 59.394 37.037 0.00 0.00 0.00 1.82
2024 2144 8.443937 CCAAAATAAGTGTCTTGAGCTTACTAC 58.556 37.037 0.00 0.00 0.00 2.73
2025 2145 8.988934 CAAAATAAGTGTCTTGAGCTTACTACA 58.011 33.333 0.00 0.00 0.00 2.74
2026 2146 9.555727 AAAATAAGTGTCTTGAGCTTACTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2027 2147 9.555727 AAATAAGTGTCTTGAGCTTACTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2028 2148 9.726438 AATAAGTGTCTTGAGCTTACTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2029 2149 9.726438 ATAAGTGTCTTGAGCTTACTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2030 2150 8.451908 AAGTGTCTTGAGCTTACTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2031 2151 7.865707 AGTGTCTTGAGCTTACTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
2032 2152 7.499232 AGTGTCTTGAGCTTACTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
2033 2153 8.770828 GTGTCTTGAGCTTACTACAAATTTGTA 58.229 33.333 25.48 25.48 42.35 2.41
2034 2154 8.770828 TGTCTTGAGCTTACTACAAATTTGTAC 58.229 33.333 23.91 15.11 42.35 2.90
2035 2155 8.989980 GTCTTGAGCTTACTACAAATTTGTACT 58.010 33.333 23.91 18.93 42.35 2.73
2039 2159 9.856488 TGAGCTTACTACAAATTTGTACTAGAG 57.144 33.333 23.91 18.55 42.35 2.43
2040 2160 8.705048 AGCTTACTACAAATTTGTACTAGAGC 57.295 34.615 23.91 24.86 42.35 4.09
2041 2161 8.532819 AGCTTACTACAAATTTGTACTAGAGCT 58.467 33.333 27.47 27.47 42.35 4.09
2042 2162 9.798994 GCTTACTACAAATTTGTACTAGAGCTA 57.201 33.333 23.91 10.15 42.35 3.32
2046 2166 9.021807 ACTACAAATTTGTACTAGAGCTAGTCA 57.978 33.333 23.91 8.92 44.58 3.41
2047 2167 9.509855 CTACAAATTTGTACTAGAGCTAGTCAG 57.490 37.037 23.91 9.62 44.58 3.51
2048 2168 7.324178 ACAAATTTGTACTAGAGCTAGTCAGG 58.676 38.462 22.10 0.69 44.58 3.86
2049 2169 6.472686 AATTTGTACTAGAGCTAGTCAGGG 57.527 41.667 13.08 0.00 44.58 4.45
2050 2170 2.933573 TGTACTAGAGCTAGTCAGGGC 58.066 52.381 13.08 2.52 44.58 5.19
2051 2171 2.232399 GTACTAGAGCTAGTCAGGGCC 58.768 57.143 13.08 0.00 44.58 5.80
2052 2172 0.466555 ACTAGAGCTAGTCAGGGCCG 60.467 60.000 4.38 0.00 42.30 6.13
2053 2173 0.466555 CTAGAGCTAGTCAGGGCCGT 60.467 60.000 0.00 0.00 0.00 5.68
2054 2174 0.465824 TAGAGCTAGTCAGGGCCGTC 60.466 60.000 0.00 0.00 0.00 4.79
2055 2175 1.755008 GAGCTAGTCAGGGCCGTCT 60.755 63.158 0.00 0.26 0.00 4.18
2056 2176 1.730451 GAGCTAGTCAGGGCCGTCTC 61.730 65.000 0.00 0.00 0.00 3.36
2057 2177 2.787567 GCTAGTCAGGGCCGTCTCC 61.788 68.421 0.00 0.00 0.00 3.71
2058 2178 1.379977 CTAGTCAGGGCCGTCTCCA 60.380 63.158 0.00 0.00 0.00 3.86
2059 2179 0.970937 CTAGTCAGGGCCGTCTCCAA 60.971 60.000 0.00 0.00 0.00 3.53
2060 2180 0.970937 TAGTCAGGGCCGTCTCCAAG 60.971 60.000 0.00 0.00 0.00 3.61
2061 2181 2.119611 TCAGGGCCGTCTCCAAGA 59.880 61.111 0.00 0.00 0.00 3.02
2062 2182 1.535444 TCAGGGCCGTCTCCAAGAA 60.535 57.895 0.00 0.00 0.00 2.52
2063 2183 0.909610 TCAGGGCCGTCTCCAAGAAT 60.910 55.000 0.00 0.00 0.00 2.40
2064 2184 0.035056 CAGGGCCGTCTCCAAGAATT 60.035 55.000 0.00 0.00 0.00 2.17
2065 2185 0.698818 AGGGCCGTCTCCAAGAATTT 59.301 50.000 0.00 0.00 0.00 1.82
2066 2186 0.811281 GGGCCGTCTCCAAGAATTTG 59.189 55.000 0.00 0.00 0.00 2.32
2074 2194 3.297904 CAAGAATTTGGGGCCCCG 58.702 61.111 36.00 15.31 39.42 5.73
2075 2195 2.038813 AAGAATTTGGGGCCCCGG 59.961 61.111 36.00 0.00 39.42 5.73
2076 2196 4.777854 AGAATTTGGGGCCCCGGC 62.778 66.667 36.00 21.51 39.42 6.13
2086 2206 2.360225 GCCCCGGCCGAACTTTAA 60.360 61.111 30.73 0.00 34.56 1.52
2087 2207 1.972752 GCCCCGGCCGAACTTTAAA 60.973 57.895 30.73 0.00 34.56 1.52
2088 2208 1.525718 GCCCCGGCCGAACTTTAAAA 61.526 55.000 30.73 0.00 34.56 1.52
2089 2209 1.179152 CCCCGGCCGAACTTTAAAAT 58.821 50.000 30.73 0.00 0.00 1.82
2090 2210 1.135228 CCCCGGCCGAACTTTAAAATG 60.135 52.381 30.73 4.42 0.00 2.32
2091 2211 1.135228 CCCGGCCGAACTTTAAAATGG 60.135 52.381 30.73 10.85 0.00 3.16
2092 2212 1.135228 CCGGCCGAACTTTAAAATGGG 60.135 52.381 30.73 0.00 0.00 4.00
2093 2213 1.734377 CGGCCGAACTTTAAAATGGGC 60.734 52.381 24.07 14.60 38.56 5.36
2094 2214 2.004583 GCCGAACTTTAAAATGGGCC 57.995 50.000 12.85 0.00 33.06 5.80
2095 2215 1.404986 GCCGAACTTTAAAATGGGCCC 60.405 52.381 17.59 17.59 33.06 5.80
2096 2216 2.176045 CCGAACTTTAAAATGGGCCCT 58.824 47.619 25.70 4.56 0.00 5.19
2097 2217 3.358118 CCGAACTTTAAAATGGGCCCTA 58.642 45.455 25.70 10.18 0.00 3.53
2098 2218 3.380320 CCGAACTTTAAAATGGGCCCTAG 59.620 47.826 25.70 10.79 0.00 3.02
2099 2219 4.266714 CGAACTTTAAAATGGGCCCTAGA 58.733 43.478 25.70 2.00 0.00 2.43
2100 2220 4.703093 CGAACTTTAAAATGGGCCCTAGAA 59.297 41.667 25.70 1.52 0.00 2.10
2101 2221 5.184287 CGAACTTTAAAATGGGCCCTAGAAA 59.816 40.000 25.70 14.43 0.00 2.52
2102 2222 5.995565 ACTTTAAAATGGGCCCTAGAAAC 57.004 39.130 25.70 0.00 0.00 2.78
2103 2223 4.461431 ACTTTAAAATGGGCCCTAGAAACG 59.539 41.667 25.70 10.85 0.00 3.60
2104 2224 1.182667 AAAATGGGCCCTAGAAACGC 58.817 50.000 25.70 0.00 0.00 4.84
2105 2225 0.039035 AAATGGGCCCTAGAAACGCA 59.961 50.000 25.70 0.00 0.00 5.24
2106 2226 0.258774 AATGGGCCCTAGAAACGCAT 59.741 50.000 25.70 0.54 38.46 4.73
2107 2227 1.136828 ATGGGCCCTAGAAACGCATA 58.863 50.000 25.70 0.00 35.48 3.14
2108 2228 0.179468 TGGGCCCTAGAAACGCATAC 59.821 55.000 25.70 0.00 0.00 2.39
2109 2229 0.468648 GGGCCCTAGAAACGCATACT 59.531 55.000 17.04 0.00 0.00 2.12
2110 2230 1.690352 GGGCCCTAGAAACGCATACTA 59.310 52.381 17.04 0.00 0.00 1.82
2111 2231 2.302157 GGGCCCTAGAAACGCATACTAT 59.698 50.000 17.04 0.00 0.00 2.12
2112 2232 3.586892 GGCCCTAGAAACGCATACTATC 58.413 50.000 0.00 0.00 0.00 2.08
2113 2233 3.006537 GGCCCTAGAAACGCATACTATCA 59.993 47.826 0.00 0.00 0.00 2.15
2114 2234 3.988517 GCCCTAGAAACGCATACTATCAC 59.011 47.826 0.00 0.00 0.00 3.06
2115 2235 4.262079 GCCCTAGAAACGCATACTATCACT 60.262 45.833 0.00 0.00 0.00 3.41
2116 2236 5.739358 GCCCTAGAAACGCATACTATCACTT 60.739 44.000 0.00 0.00 0.00 3.16
2117 2237 5.921408 CCCTAGAAACGCATACTATCACTTC 59.079 44.000 0.00 0.00 0.00 3.01
2118 2238 6.461092 CCCTAGAAACGCATACTATCACTTCA 60.461 42.308 0.00 0.00 0.00 3.02
2119 2239 7.148641 CCTAGAAACGCATACTATCACTTCAT 58.851 38.462 0.00 0.00 0.00 2.57
2120 2240 7.653713 CCTAGAAACGCATACTATCACTTCATT 59.346 37.037 0.00 0.00 0.00 2.57
2121 2241 9.678941 CTAGAAACGCATACTATCACTTCATTA 57.321 33.333 0.00 0.00 0.00 1.90
2172 2292 8.915871 ACACAACATTTAGAATTATGCATGAC 57.084 30.769 10.16 0.00 0.00 3.06
2173 2293 7.697710 ACACAACATTTAGAATTATGCATGACG 59.302 33.333 10.16 0.00 0.00 4.35
2174 2294 7.909641 CACAACATTTAGAATTATGCATGACGA 59.090 33.333 10.16 0.00 0.00 4.20
2175 2295 7.910162 ACAACATTTAGAATTATGCATGACGAC 59.090 33.333 10.16 0.00 0.00 4.34
2176 2296 7.792374 ACATTTAGAATTATGCATGACGACT 57.208 32.000 10.16 4.47 0.00 4.18
2177 2297 8.213518 ACATTTAGAATTATGCATGACGACTT 57.786 30.769 10.16 0.00 0.00 3.01
2178 2298 8.124823 ACATTTAGAATTATGCATGACGACTTG 58.875 33.333 10.16 0.00 0.00 3.16
2179 2299 7.841915 TTTAGAATTATGCATGACGACTTGA 57.158 32.000 10.16 0.00 0.00 3.02
2180 2300 5.980698 AGAATTATGCATGACGACTTGAG 57.019 39.130 10.16 0.00 0.00 3.02
2181 2301 5.664457 AGAATTATGCATGACGACTTGAGA 58.336 37.500 10.16 0.00 0.00 3.27
2182 2302 5.752472 AGAATTATGCATGACGACTTGAGAG 59.248 40.000 10.16 0.00 0.00 3.20
2183 2303 1.649664 ATGCATGACGACTTGAGAGC 58.350 50.000 0.00 0.00 0.00 4.09
2184 2304 0.605083 TGCATGACGACTTGAGAGCT 59.395 50.000 0.00 0.00 0.00 4.09
2185 2305 0.997932 GCATGACGACTTGAGAGCTG 59.002 55.000 0.00 0.00 0.00 4.24
2186 2306 1.638133 CATGACGACTTGAGAGCTGG 58.362 55.000 0.00 0.00 0.00 4.85
2187 2307 0.108424 ATGACGACTTGAGAGCTGGC 60.108 55.000 0.00 0.00 0.00 4.85
2188 2308 1.446966 GACGACTTGAGAGCTGGCC 60.447 63.158 0.00 0.00 0.00 5.36
2189 2309 2.159819 GACGACTTGAGAGCTGGCCA 62.160 60.000 4.71 4.71 0.00 5.36
2190 2310 1.447489 CGACTTGAGAGCTGGCCAG 60.447 63.158 29.34 29.34 0.00 4.85
2191 2311 1.676384 GACTTGAGAGCTGGCCAGT 59.324 57.895 32.81 19.96 0.00 4.00
2192 2312 0.036022 GACTTGAGAGCTGGCCAGTT 59.964 55.000 32.81 28.59 0.00 3.16
2193 2313 0.250640 ACTTGAGAGCTGGCCAGTTG 60.251 55.000 32.81 17.43 0.00 3.16
2194 2314 0.250640 CTTGAGAGCTGGCCAGTTGT 60.251 55.000 32.81 26.57 0.00 3.32
2195 2315 0.535780 TTGAGAGCTGGCCAGTTGTG 60.536 55.000 32.81 9.78 0.00 3.33
2196 2316 2.282040 AGAGCTGGCCAGTTGTGC 60.282 61.111 32.81 19.82 0.00 4.57
2197 2317 2.595463 GAGCTGGCCAGTTGTGCA 60.595 61.111 32.81 0.00 0.00 4.57
2198 2318 2.123769 AGCTGGCCAGTTGTGCAA 60.124 55.556 32.81 0.00 0.00 4.08
2199 2319 2.138656 GAGCTGGCCAGTTGTGCAAG 62.139 60.000 32.81 6.54 32.66 4.01
2200 2320 2.492773 GCTGGCCAGTTGTGCAAGT 61.493 57.895 32.81 0.00 32.09 3.16
2201 2321 1.172180 GCTGGCCAGTTGTGCAAGTA 61.172 55.000 32.81 0.00 32.09 2.24
2202 2322 0.593128 CTGGCCAGTTGTGCAAGTAC 59.407 55.000 25.53 0.00 0.00 2.73
2203 2323 0.106967 TGGCCAGTTGTGCAAGTACA 60.107 50.000 0.00 0.00 0.00 2.90
2204 2324 1.247567 GGCCAGTTGTGCAAGTACAT 58.752 50.000 0.00 0.00 0.00 2.29
2205 2325 2.224646 TGGCCAGTTGTGCAAGTACATA 60.225 45.455 0.00 0.00 0.00 2.29
2206 2326 2.817258 GGCCAGTTGTGCAAGTACATAA 59.183 45.455 0.00 0.00 0.00 1.90
2207 2327 3.254657 GGCCAGTTGTGCAAGTACATAAA 59.745 43.478 0.00 0.00 0.00 1.40
2208 2328 4.261825 GGCCAGTTGTGCAAGTACATAAAA 60.262 41.667 0.00 0.00 0.00 1.52
2209 2329 4.917415 GCCAGTTGTGCAAGTACATAAAAG 59.083 41.667 0.00 0.00 0.00 2.27
2210 2330 5.278266 GCCAGTTGTGCAAGTACATAAAAGA 60.278 40.000 0.00 0.00 0.00 2.52
2211 2331 6.570378 GCCAGTTGTGCAAGTACATAAAAGAT 60.570 38.462 0.00 0.00 0.00 2.40
2212 2332 6.803320 CCAGTTGTGCAAGTACATAAAAGATG 59.197 38.462 0.00 0.00 0.00 2.90
2213 2333 7.308529 CCAGTTGTGCAAGTACATAAAAGATGA 60.309 37.037 0.00 0.00 0.00 2.92
2214 2334 8.075574 CAGTTGTGCAAGTACATAAAAGATGAA 58.924 33.333 0.00 0.00 0.00 2.57
2215 2335 8.076178 AGTTGTGCAAGTACATAAAAGATGAAC 58.924 33.333 0.00 0.00 0.00 3.18
2216 2336 7.503521 TGTGCAAGTACATAAAAGATGAACA 57.496 32.000 0.00 0.00 0.00 3.18
2217 2337 8.109705 TGTGCAAGTACATAAAAGATGAACAT 57.890 30.769 0.00 0.00 0.00 2.71
2218 2338 9.225436 TGTGCAAGTACATAAAAGATGAACATA 57.775 29.630 0.00 0.00 0.00 2.29
2219 2339 9.708222 GTGCAAGTACATAAAAGATGAACATAG 57.292 33.333 0.00 0.00 0.00 2.23
2220 2340 9.665719 TGCAAGTACATAAAAGATGAACATAGA 57.334 29.630 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.494347 TGTTTGGATGCGAAAGAAAATATTTTG 58.506 29.630 17.98 4.69 0.00 2.44
30 31 7.338710 TCTAGAGTTCCCTATTTGTTTGGATG 58.661 38.462 0.00 0.00 0.00 3.51
51 52 5.907197 TTGAAACTCAACGAAGCTTCTAG 57.093 39.130 23.50 16.46 30.26 2.43
73 74 6.511605 GCCGAAACAATTGCTGAAAAGAAATT 60.512 34.615 5.05 0.00 0.00 1.82
85 86 0.108851 AATCCCGCCGAAACAATTGC 60.109 50.000 5.05 0.00 0.00 3.56
106 107 1.546029 GGGCTGGGATTGTTTCTCAAC 59.454 52.381 0.00 0.00 38.97 3.18
135 136 2.158667 AGGGTTTTCGGCAGAGAGAAAA 60.159 45.455 0.00 0.00 42.06 2.29
223 224 1.185618 TGGTCTCTTGGTCGTGGAGG 61.186 60.000 0.00 0.00 0.00 4.30
305 307 4.222145 ACAGGTCGAGGTTCAGCTTAATAA 59.778 41.667 0.00 0.00 0.00 1.40
370 372 4.010349 AGCTTGCCTTCTTGTATGGTTAC 58.990 43.478 0.00 0.00 0.00 2.50
371 373 4.301072 AGCTTGCCTTCTTGTATGGTTA 57.699 40.909 0.00 0.00 0.00 2.85
372 374 3.160679 AGCTTGCCTTCTTGTATGGTT 57.839 42.857 0.00 0.00 0.00 3.67
373 375 2.887151 AGCTTGCCTTCTTGTATGGT 57.113 45.000 0.00 0.00 0.00 3.55
378 380 2.260822 TCCTCTAGCTTGCCTTCTTGT 58.739 47.619 0.00 0.00 0.00 3.16
385 391 1.406205 GGTGAGTTCCTCTAGCTTGCC 60.406 57.143 0.00 0.00 0.00 4.52
405 411 2.360165 GGCCCTGATAGATTGCAACAAG 59.640 50.000 0.00 0.00 0.00 3.16
422 428 5.643664 AGATAAAAATAAACGTTTCGGCCC 58.356 37.500 18.42 1.10 0.00 5.80
438 444 9.585099 GCACATGACCAATATCAAAAGATAAAA 57.415 29.630 0.00 0.00 30.82 1.52
484 500 6.098409 CAGATTAGAAAACCTAGGTAGCTCCA 59.902 42.308 16.67 4.18 39.02 3.86
485 501 6.463190 CCAGATTAGAAAACCTAGGTAGCTCC 60.463 46.154 16.67 3.31 0.00 4.70
486 502 6.517605 CCAGATTAGAAAACCTAGGTAGCTC 58.482 44.000 16.67 11.93 0.00 4.09
527 543 5.869579 AGCCAAGAATATATGGTCGTCAAT 58.130 37.500 4.57 0.00 39.00 2.57
577 602 6.410540 AGAGTGGAAGAATTAACCAGACATC 58.589 40.000 0.00 0.00 34.21 3.06
659 688 5.890985 CGACCTATCCTGGAGAGATTGATAT 59.109 44.000 19.59 0.00 0.00 1.63
672 701 2.495270 CCCATCTGATCGACCTATCCTG 59.505 54.545 0.00 0.00 0.00 3.86
680 709 7.306632 CGAGTAAAAATAACCCATCTGATCGAC 60.307 40.741 0.00 0.00 0.00 4.20
705 734 5.223382 AGAATGAGCATCCTAACGTATTCG 58.777 41.667 0.00 0.00 43.34 3.34
721 761 9.727859 AATCTATTCCATGATCAAGAGAATGAG 57.272 33.333 20.23 15.16 31.76 2.90
739 779 7.887996 TCAACCAACAAAATGCAATCTATTC 57.112 32.000 0.00 0.00 0.00 1.75
897 941 7.850193 ACAAAATAGTGGGAATGCAATTATGT 58.150 30.769 0.00 0.00 36.07 2.29
898 942 9.814899 TTACAAAATAGTGGGAATGCAATTATG 57.185 29.630 0.00 0.00 36.07 1.90
951 1024 3.872771 GTCTCTTCTCTACCTGTAGACCG 59.127 52.174 2.91 0.00 37.28 4.79
978 1059 3.145551 GCCGCCCTTCCGTCTCTA 61.146 66.667 0.00 0.00 0.00 2.43
997 1078 2.290071 CCTCAAAGGTAACGTCCATGGT 60.290 50.000 12.58 0.00 46.39 3.55
998 1079 2.356135 CCTCAAAGGTAACGTCCATGG 58.644 52.381 4.97 4.97 46.39 3.66
1011 1092 0.951040 AGCCGTTCTTCGCCTCAAAG 60.951 55.000 0.00 0.00 38.35 2.77
1119 1200 1.403249 CCATTGAAGAAAAGCCGCTGG 60.403 52.381 0.00 0.00 0.00 4.85
1195 1276 2.042831 GCAGTTCAAGGCGGATGCT 61.043 57.895 0.00 0.00 42.25 3.79
1214 1295 1.885887 GTAACATGGTCAAGCTTGCCA 59.114 47.619 31.28 31.28 38.23 4.92
1215 1296 1.202348 GGTAACATGGTCAAGCTTGCC 59.798 52.381 21.99 23.51 0.00 4.52
1233 1314 3.443976 GAAACGCACAAATCACAAAGGT 58.556 40.909 0.00 0.00 0.00 3.50
1264 1353 0.693049 ATCCGTTGCTTCCTCCTTGT 59.307 50.000 0.00 0.00 0.00 3.16
1278 1367 7.070821 AGTGGTGAAGTTATTATTCCTATCCGT 59.929 37.037 0.00 0.00 0.00 4.69
1296 1385 5.543714 TGCGTAAAATAGAGAAGTGGTGAA 58.456 37.500 0.00 0.00 0.00 3.18
1298 1387 5.727791 GCATGCGTAAAATAGAGAAGTGGTG 60.728 44.000 0.00 0.00 0.00 4.17
1300 1389 4.332543 TGCATGCGTAAAATAGAGAAGTGG 59.667 41.667 14.09 0.00 0.00 4.00
1301 1390 5.469373 TGCATGCGTAAAATAGAGAAGTG 57.531 39.130 14.09 0.00 0.00 3.16
1302 1391 5.504665 GCATGCATGCGTAAAATAGAGAAGT 60.505 40.000 33.99 0.00 44.67 3.01
1303 1392 4.908156 GCATGCATGCGTAAAATAGAGAAG 59.092 41.667 33.99 0.00 44.67 2.85
1328 1424 7.278461 ACATACTTGGAGCAGTATAGTACAG 57.722 40.000 0.00 0.00 37.81 2.74
1329 1425 7.041576 CGTACATACTTGGAGCAGTATAGTACA 60.042 40.741 19.81 0.00 39.90 2.90
1330 1426 7.296660 CGTACATACTTGGAGCAGTATAGTAC 58.703 42.308 15.40 15.40 37.81 2.73
1331 1427 6.429078 CCGTACATACTTGGAGCAGTATAGTA 59.571 42.308 0.00 0.00 37.81 1.82
1332 1428 5.241064 CCGTACATACTTGGAGCAGTATAGT 59.759 44.000 0.00 0.00 37.81 2.12
1333 1429 5.472478 TCCGTACATACTTGGAGCAGTATAG 59.528 44.000 0.00 0.00 37.81 1.31
1334 1430 5.379187 TCCGTACATACTTGGAGCAGTATA 58.621 41.667 0.00 0.00 37.81 1.47
1335 1431 4.212716 TCCGTACATACTTGGAGCAGTAT 58.787 43.478 0.00 0.00 40.08 2.12
1336 1432 3.623703 TCCGTACATACTTGGAGCAGTA 58.376 45.455 0.00 0.00 33.70 2.74
1337 1433 2.453521 TCCGTACATACTTGGAGCAGT 58.546 47.619 0.00 0.00 0.00 4.40
1354 1450 3.491267 GGCGAAGACTCTGATTTATTCCG 59.509 47.826 0.00 0.00 0.00 4.30
1483 1601 2.601979 CGAGCAAGCATCGTCAAAACAA 60.602 45.455 0.00 0.00 35.48 2.83
1502 1620 7.094933 GCTTAGGAAGAAAATTTTGGTAGACGA 60.095 37.037 8.47 0.00 0.00 4.20
1510 1628 7.148523 GCATTGGAGCTTAGGAAGAAAATTTTG 60.149 37.037 8.47 0.00 0.00 2.44
1511 1629 6.875726 GCATTGGAGCTTAGGAAGAAAATTTT 59.124 34.615 2.28 2.28 0.00 1.82
1512 1630 6.401394 GCATTGGAGCTTAGGAAGAAAATTT 58.599 36.000 0.00 0.00 0.00 1.82
1513 1631 5.393461 CGCATTGGAGCTTAGGAAGAAAATT 60.393 40.000 0.00 0.00 0.00 1.82
1514 1632 4.096984 CGCATTGGAGCTTAGGAAGAAAAT 59.903 41.667 0.00 0.00 0.00 1.82
1515 1633 3.440173 CGCATTGGAGCTTAGGAAGAAAA 59.560 43.478 0.00 0.00 0.00 2.29
1516 1634 3.009723 CGCATTGGAGCTTAGGAAGAAA 58.990 45.455 0.00 0.00 0.00 2.52
1517 1635 2.632377 CGCATTGGAGCTTAGGAAGAA 58.368 47.619 0.00 0.00 0.00 2.52
1518 1636 1.134401 CCGCATTGGAGCTTAGGAAGA 60.134 52.381 0.00 0.00 42.00 2.87
1519 1637 1.303309 CCGCATTGGAGCTTAGGAAG 58.697 55.000 0.00 0.00 42.00 3.46
1520 1638 0.748005 GCCGCATTGGAGCTTAGGAA 60.748 55.000 0.00 0.00 42.00 3.36
1521 1639 1.153168 GCCGCATTGGAGCTTAGGA 60.153 57.895 0.00 0.00 42.00 2.94
1522 1640 2.189499 GGCCGCATTGGAGCTTAGG 61.189 63.158 0.00 0.00 42.00 2.69
1523 1641 0.749454 AAGGCCGCATTGGAGCTTAG 60.749 55.000 0.00 0.00 42.00 2.18
1524 1642 0.748005 GAAGGCCGCATTGGAGCTTA 60.748 55.000 0.00 0.00 42.00 3.09
1525 1643 2.036256 AAGGCCGCATTGGAGCTT 59.964 55.556 0.00 0.00 42.00 3.74
1526 1644 2.439156 GAAGGCCGCATTGGAGCT 60.439 61.111 0.00 0.00 42.00 4.09
1527 1645 3.521796 GGAAGGCCGCATTGGAGC 61.522 66.667 0.00 0.00 42.00 4.70
1528 1646 2.830370 GGGAAGGCCGCATTGGAG 60.830 66.667 0.00 0.00 42.00 3.86
1529 1647 4.440829 GGGGAAGGCCGCATTGGA 62.441 66.667 0.00 0.00 45.89 3.53
1537 1655 4.811364 GAGCAGCAGGGGAAGGCC 62.811 72.222 0.00 0.00 0.00 5.19
1538 1656 4.811364 GGAGCAGCAGGGGAAGGC 62.811 72.222 0.00 0.00 0.00 4.35
1539 1657 2.220786 ATTGGAGCAGCAGGGGAAGG 62.221 60.000 0.00 0.00 0.00 3.46
1540 1658 1.035932 CATTGGAGCAGCAGGGGAAG 61.036 60.000 0.00 0.00 0.00 3.46
1541 1659 1.000521 CATTGGAGCAGCAGGGGAA 60.001 57.895 0.00 0.00 0.00 3.97
1542 1660 2.679092 CATTGGAGCAGCAGGGGA 59.321 61.111 0.00 0.00 0.00 4.81
1543 1661 2.441532 CCATTGGAGCAGCAGGGG 60.442 66.667 0.00 0.00 0.00 4.79
1544 1662 1.751927 GTCCATTGGAGCAGCAGGG 60.752 63.158 5.39 0.00 29.39 4.45
1545 1663 1.001764 TGTCCATTGGAGCAGCAGG 60.002 57.895 5.39 0.00 29.39 4.85
1546 1664 0.607217 TGTGTCCATTGGAGCAGCAG 60.607 55.000 5.39 0.00 29.39 4.24
1547 1665 0.607217 CTGTGTCCATTGGAGCAGCA 60.607 55.000 18.58 6.88 32.27 4.41
1548 1666 1.930908 GCTGTGTCCATTGGAGCAGC 61.931 60.000 30.21 30.21 46.39 5.25
1549 1667 1.642037 CGCTGTGTCCATTGGAGCAG 61.642 60.000 23.07 23.07 38.26 4.24
1550 1668 1.672030 CGCTGTGTCCATTGGAGCA 60.672 57.895 5.39 7.61 29.39 4.26
1551 1669 2.401766 CCGCTGTGTCCATTGGAGC 61.402 63.158 5.39 5.10 29.39 4.70
1552 1670 1.021390 GTCCGCTGTGTCCATTGGAG 61.021 60.000 5.39 0.00 29.39 3.86
1553 1671 1.003839 GTCCGCTGTGTCCATTGGA 60.004 57.895 0.00 0.00 0.00 3.53
1554 1672 2.040544 GGTCCGCTGTGTCCATTGG 61.041 63.158 0.00 0.00 0.00 3.16
1555 1673 2.390599 CGGTCCGCTGTGTCCATTG 61.391 63.158 0.00 0.00 0.00 2.82
1556 1674 2.047274 CGGTCCGCTGTGTCCATT 60.047 61.111 0.00 0.00 0.00 3.16
1557 1675 2.507110 CTTCGGTCCGCTGTGTCCAT 62.507 60.000 6.34 0.00 0.00 3.41
1558 1676 3.220999 CTTCGGTCCGCTGTGTCCA 62.221 63.158 6.34 0.00 0.00 4.02
1559 1677 2.227089 ATCTTCGGTCCGCTGTGTCC 62.227 60.000 6.34 0.00 0.00 4.02
1560 1678 1.078759 CATCTTCGGTCCGCTGTGTC 61.079 60.000 6.34 0.00 0.00 3.67
1561 1679 1.079819 CATCTTCGGTCCGCTGTGT 60.080 57.895 6.34 0.00 0.00 3.72
1562 1680 2.456119 GCATCTTCGGTCCGCTGTG 61.456 63.158 6.34 4.02 0.00 3.66
1563 1681 2.125512 GCATCTTCGGTCCGCTGT 60.126 61.111 6.34 0.00 0.00 4.40
1564 1682 2.125552 TGCATCTTCGGTCCGCTG 60.126 61.111 6.34 1.42 0.00 5.18
1565 1683 2.185350 CTGCATCTTCGGTCCGCT 59.815 61.111 6.34 0.00 0.00 5.52
1566 1684 2.892425 CCTGCATCTTCGGTCCGC 60.892 66.667 6.34 0.00 0.00 5.54
1567 1685 2.892425 GCCTGCATCTTCGGTCCG 60.892 66.667 4.39 4.39 0.00 4.79
1568 1686 2.514824 GGCCTGCATCTTCGGTCC 60.515 66.667 0.00 0.00 0.00 4.46
1569 1687 2.514824 GGGCCTGCATCTTCGGTC 60.515 66.667 0.84 0.00 0.00 4.79
1570 1688 2.543067 GAAGGGCCTGCATCTTCGGT 62.543 60.000 6.92 0.00 0.00 4.69
1571 1689 1.821332 GAAGGGCCTGCATCTTCGG 60.821 63.158 6.92 0.00 0.00 4.30
1572 1690 0.393537 AAGAAGGGCCTGCATCTTCG 60.394 55.000 15.67 0.00 41.07 3.79
1573 1691 1.387539 GAAGAAGGGCCTGCATCTTC 58.612 55.000 23.70 23.70 40.50 2.87
1574 1692 0.393537 CGAAGAAGGGCCTGCATCTT 60.394 55.000 15.67 16.39 34.96 2.40
1575 1693 1.222936 CGAAGAAGGGCCTGCATCT 59.777 57.895 15.67 7.43 0.00 2.90
1576 1694 1.078143 ACGAAGAAGGGCCTGCATC 60.078 57.895 15.67 10.94 0.00 3.91
1577 1695 1.078143 GACGAAGAAGGGCCTGCAT 60.078 57.895 15.67 0.00 0.00 3.96
1578 1696 2.347490 GACGAAGAAGGGCCTGCA 59.653 61.111 15.67 0.00 0.00 4.41
1579 1697 2.815647 CGACGAAGAAGGGCCTGC 60.816 66.667 6.92 4.43 0.00 4.85
1580 1698 1.738099 CACGACGAAGAAGGGCCTG 60.738 63.158 6.92 0.00 0.00 4.85
1581 1699 2.657237 CACGACGAAGAAGGGCCT 59.343 61.111 0.00 0.00 0.00 5.19
1582 1700 2.434359 CCACGACGAAGAAGGGCC 60.434 66.667 0.00 0.00 0.00 5.80
1583 1701 3.119096 GCCACGACGAAGAAGGGC 61.119 66.667 0.00 0.78 0.00 5.19
1584 1702 1.738099 CTGCCACGACGAAGAAGGG 60.738 63.158 0.00 0.00 0.00 3.95
1585 1703 2.383527 GCTGCCACGACGAAGAAGG 61.384 63.158 0.00 0.00 0.00 3.46
1586 1704 2.383527 GGCTGCCACGACGAAGAAG 61.384 63.158 15.17 0.00 0.00 2.85
1587 1705 2.357034 GGCTGCCACGACGAAGAA 60.357 61.111 15.17 0.00 0.00 2.52
1588 1706 3.611674 TGGCTGCCACGACGAAGA 61.612 61.111 19.30 0.00 0.00 2.87
1589 1707 3.414700 GTGGCTGCCACGACGAAG 61.415 66.667 33.53 0.00 44.95 3.79
1603 1721 3.976701 GACGGGACATGGCCAGTGG 62.977 68.421 29.38 11.83 36.46 4.00
1604 1722 2.436646 GACGGGACATGGCCAGTG 60.437 66.667 29.38 15.17 36.46 3.66
1605 1723 2.224159 AAGACGGGACATGGCCAGT 61.224 57.895 24.65 24.65 39.10 4.00
1606 1724 1.746615 CAAGACGGGACATGGCCAG 60.747 63.158 22.13 19.57 0.00 4.85
1607 1725 2.350895 CAAGACGGGACATGGCCA 59.649 61.111 22.13 8.56 0.00 5.36
1608 1726 3.134127 GCAAGACGGGACATGGCC 61.134 66.667 10.00 10.00 0.00 5.36
1609 1727 3.134127 GGCAAGACGGGACATGGC 61.134 66.667 0.00 0.00 0.00 4.40
1610 1728 2.819595 CGGCAAGACGGGACATGG 60.820 66.667 0.00 0.00 0.00 3.66
1611 1729 3.499737 GCGGCAAGACGGGACATG 61.500 66.667 0.00 0.00 0.00 3.21
1612 1730 3.706373 AGCGGCAAGACGGGACAT 61.706 61.111 1.45 0.00 0.00 3.06
1613 1731 4.680237 CAGCGGCAAGACGGGACA 62.680 66.667 1.45 0.00 0.00 4.02
1618 1736 3.782244 GTGAGCAGCGGCAAGACG 61.782 66.667 12.44 0.00 44.61 4.18
1619 1737 3.426568 GGTGAGCAGCGGCAAGAC 61.427 66.667 12.44 4.00 44.61 3.01
1627 1745 0.674895 ACTTGATTCCGGTGAGCAGC 60.675 55.000 0.00 0.00 0.00 5.25
1628 1746 1.081892 CACTTGATTCCGGTGAGCAG 58.918 55.000 0.00 0.00 33.32 4.24
1629 1747 0.396435 ACACTTGATTCCGGTGAGCA 59.604 50.000 0.00 0.00 35.28 4.26
1630 1748 2.380084 TACACTTGATTCCGGTGAGC 57.620 50.000 0.00 0.00 35.28 4.26
1631 1749 5.880054 AAATTACACTTGATTCCGGTGAG 57.120 39.130 0.00 0.00 35.28 3.51
1632 1750 6.370442 CACTAAATTACACTTGATTCCGGTGA 59.630 38.462 0.00 0.00 35.28 4.02
1633 1751 6.370442 TCACTAAATTACACTTGATTCCGGTG 59.630 38.462 0.00 0.00 37.05 4.94
1634 1752 6.469410 TCACTAAATTACACTTGATTCCGGT 58.531 36.000 0.00 0.00 0.00 5.28
1635 1753 6.978343 TCACTAAATTACACTTGATTCCGG 57.022 37.500 0.00 0.00 0.00 5.14
1636 1754 9.277565 CAATTCACTAAATTACACTTGATTCCG 57.722 33.333 0.00 0.00 35.77 4.30
1641 1759 9.114952 TGTGTCAATTCACTAAATTACACTTGA 57.885 29.630 0.00 0.00 39.46 3.02
1642 1760 9.385902 CTGTGTCAATTCACTAAATTACACTTG 57.614 33.333 0.00 0.00 39.46 3.16
1643 1761 8.567948 CCTGTGTCAATTCACTAAATTACACTT 58.432 33.333 0.00 0.00 39.46 3.16
1644 1762 7.174946 CCCTGTGTCAATTCACTAAATTACACT 59.825 37.037 0.00 0.00 39.46 3.55
1645 1763 7.174253 TCCCTGTGTCAATTCACTAAATTACAC 59.826 37.037 0.00 0.00 39.34 2.90
1646 1764 7.227873 TCCCTGTGTCAATTCACTAAATTACA 58.772 34.615 0.00 0.00 35.77 2.41
1647 1765 7.681939 TCCCTGTGTCAATTCACTAAATTAC 57.318 36.000 0.00 0.00 35.77 1.89
1648 1766 8.698973 TTTCCCTGTGTCAATTCACTAAATTA 57.301 30.769 0.00 0.00 35.77 1.40
1649 1767 7.255942 CCTTTCCCTGTGTCAATTCACTAAATT 60.256 37.037 0.00 0.00 38.11 1.82
1650 1768 6.209391 CCTTTCCCTGTGTCAATTCACTAAAT 59.791 38.462 0.00 0.00 38.90 1.40
1651 1769 5.534654 CCTTTCCCTGTGTCAATTCACTAAA 59.465 40.000 0.00 0.00 38.90 1.85
1652 1770 5.070001 CCTTTCCCTGTGTCAATTCACTAA 58.930 41.667 0.00 0.00 38.90 2.24
1653 1771 4.506625 CCCTTTCCCTGTGTCAATTCACTA 60.507 45.833 0.00 0.00 38.90 2.74
1654 1772 3.490348 CCTTTCCCTGTGTCAATTCACT 58.510 45.455 0.00 0.00 38.90 3.41
1655 1773 2.558359 CCCTTTCCCTGTGTCAATTCAC 59.442 50.000 0.00 0.00 38.63 3.18
1656 1774 2.490718 CCCCTTTCCCTGTGTCAATTCA 60.491 50.000 0.00 0.00 0.00 2.57
1657 1775 2.171003 CCCCTTTCCCTGTGTCAATTC 58.829 52.381 0.00 0.00 0.00 2.17
1658 1776 1.827245 GCCCCTTTCCCTGTGTCAATT 60.827 52.381 0.00 0.00 0.00 2.32
1659 1777 0.251787 GCCCCTTTCCCTGTGTCAAT 60.252 55.000 0.00 0.00 0.00 2.57
1660 1778 1.152830 GCCCCTTTCCCTGTGTCAA 59.847 57.895 0.00 0.00 0.00 3.18
1661 1779 1.650242 TTGCCCCTTTCCCTGTGTCA 61.650 55.000 0.00 0.00 0.00 3.58
1662 1780 1.152830 TTGCCCCTTTCCCTGTGTC 59.847 57.895 0.00 0.00 0.00 3.67
1663 1781 1.152546 GTTGCCCCTTTCCCTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
1664 1782 1.152567 TGTTGCCCCTTTCCCTGTG 60.153 57.895 0.00 0.00 0.00 3.66
1665 1783 1.153756 CTGTTGCCCCTTTCCCTGT 59.846 57.895 0.00 0.00 0.00 4.00
1666 1784 1.607467 CCTGTTGCCCCTTTCCCTG 60.607 63.158 0.00 0.00 0.00 4.45
1667 1785 0.774491 TACCTGTTGCCCCTTTCCCT 60.774 55.000 0.00 0.00 0.00 4.20
1668 1786 0.323451 CTACCTGTTGCCCCTTTCCC 60.323 60.000 0.00 0.00 0.00 3.97
1669 1787 0.696501 TCTACCTGTTGCCCCTTTCC 59.303 55.000 0.00 0.00 0.00 3.13
1670 1788 2.039879 TCTTCTACCTGTTGCCCCTTTC 59.960 50.000 0.00 0.00 0.00 2.62
1671 1789 2.062636 TCTTCTACCTGTTGCCCCTTT 58.937 47.619 0.00 0.00 0.00 3.11
1672 1790 1.742308 TCTTCTACCTGTTGCCCCTT 58.258 50.000 0.00 0.00 0.00 3.95
1673 1791 1.630878 CTTCTTCTACCTGTTGCCCCT 59.369 52.381 0.00 0.00 0.00 4.79
1674 1792 1.628846 TCTTCTTCTACCTGTTGCCCC 59.371 52.381 0.00 0.00 0.00 5.80
1675 1793 2.303311 AGTCTTCTTCTACCTGTTGCCC 59.697 50.000 0.00 0.00 0.00 5.36
1676 1794 3.006967 TGAGTCTTCTTCTACCTGTTGCC 59.993 47.826 0.00 0.00 0.00 4.52
1677 1795 4.241681 CTGAGTCTTCTTCTACCTGTTGC 58.758 47.826 0.00 0.00 0.00 4.17
1678 1796 4.282195 ACCTGAGTCTTCTTCTACCTGTTG 59.718 45.833 0.00 0.00 0.00 3.33
1679 1797 4.484912 ACCTGAGTCTTCTTCTACCTGTT 58.515 43.478 0.00 0.00 0.00 3.16
1680 1798 4.083565 GACCTGAGTCTTCTTCTACCTGT 58.916 47.826 0.00 0.00 40.10 4.00
1681 1799 4.082463 GTGACCTGAGTCTTCTTCTACCTG 60.082 50.000 0.00 0.00 43.91 4.00
1682 1800 4.083565 GTGACCTGAGTCTTCTTCTACCT 58.916 47.826 0.00 0.00 43.91 3.08
1683 1801 3.119779 CGTGACCTGAGTCTTCTTCTACC 60.120 52.174 0.00 0.00 43.91 3.18
1684 1802 3.752222 TCGTGACCTGAGTCTTCTTCTAC 59.248 47.826 0.00 0.00 43.91 2.59
1685 1803 4.004314 CTCGTGACCTGAGTCTTCTTCTA 58.996 47.826 0.00 0.00 43.91 2.10
1686 1804 2.817258 CTCGTGACCTGAGTCTTCTTCT 59.183 50.000 0.00 0.00 43.91 2.85
1687 1805 2.669950 GCTCGTGACCTGAGTCTTCTTC 60.670 54.545 0.00 0.00 43.91 2.87
1688 1806 1.271102 GCTCGTGACCTGAGTCTTCTT 59.729 52.381 0.00 0.00 43.91 2.52
1689 1807 0.885196 GCTCGTGACCTGAGTCTTCT 59.115 55.000 0.00 0.00 43.91 2.85
1690 1808 0.885196 AGCTCGTGACCTGAGTCTTC 59.115 55.000 0.00 0.00 43.91 2.87
1691 1809 1.813786 GTAGCTCGTGACCTGAGTCTT 59.186 52.381 0.00 0.00 43.91 3.01
1692 1810 1.455248 GTAGCTCGTGACCTGAGTCT 58.545 55.000 0.00 0.00 43.91 3.24
1693 1811 0.452585 GGTAGCTCGTGACCTGAGTC 59.547 60.000 0.00 0.00 43.83 3.36
1694 1812 0.251209 TGGTAGCTCGTGACCTGAGT 60.251 55.000 5.04 0.00 36.62 3.41
1695 1813 1.107114 ATGGTAGCTCGTGACCTGAG 58.893 55.000 5.04 0.00 36.62 3.35
1696 1814 0.817654 CATGGTAGCTCGTGACCTGA 59.182 55.000 5.04 0.00 36.62 3.86
1697 1815 0.532573 ACATGGTAGCTCGTGACCTG 59.467 55.000 5.04 3.83 36.62 4.00
1698 1816 1.267121 AACATGGTAGCTCGTGACCT 58.733 50.000 5.04 0.00 36.62 3.85
1699 1817 2.000447 GAAACATGGTAGCTCGTGACC 59.000 52.381 0.00 0.00 36.17 4.02
1700 1818 2.000447 GGAAACATGGTAGCTCGTGAC 59.000 52.381 0.00 0.00 0.00 3.67
1701 1819 1.899814 AGGAAACATGGTAGCTCGTGA 59.100 47.619 0.00 0.00 0.00 4.35
1702 1820 2.386661 AGGAAACATGGTAGCTCGTG 57.613 50.000 0.00 0.00 0.00 4.35
1703 1821 3.418684 AAAGGAAACATGGTAGCTCGT 57.581 42.857 0.00 0.00 0.00 4.18
1704 1822 6.093495 TGAATAAAAGGAAACATGGTAGCTCG 59.907 38.462 0.00 0.00 0.00 5.03
1705 1823 7.121315 AGTGAATAAAAGGAAACATGGTAGCTC 59.879 37.037 0.00 0.00 0.00 4.09
1706 1824 6.948309 AGTGAATAAAAGGAAACATGGTAGCT 59.052 34.615 0.00 0.00 0.00 3.32
1707 1825 7.094377 TGAGTGAATAAAAGGAAACATGGTAGC 60.094 37.037 0.00 0.00 0.00 3.58
1708 1826 8.335532 TGAGTGAATAAAAGGAAACATGGTAG 57.664 34.615 0.00 0.00 0.00 3.18
1709 1827 8.698973 TTGAGTGAATAAAAGGAAACATGGTA 57.301 30.769 0.00 0.00 0.00 3.25
1710 1828 7.595819 TTGAGTGAATAAAAGGAAACATGGT 57.404 32.000 0.00 0.00 0.00 3.55
1725 1843 9.558396 TTTTTGCCATTTTCTATTTGAGTGAAT 57.442 25.926 0.00 0.00 0.00 2.57
1726 1844 8.825745 GTTTTTGCCATTTTCTATTTGAGTGAA 58.174 29.630 0.00 0.00 0.00 3.18
1727 1845 7.440856 GGTTTTTGCCATTTTCTATTTGAGTGA 59.559 33.333 0.00 0.00 0.00 3.41
1728 1846 7.226325 TGGTTTTTGCCATTTTCTATTTGAGTG 59.774 33.333 0.00 0.00 32.81 3.51
1729 1847 7.278875 TGGTTTTTGCCATTTTCTATTTGAGT 58.721 30.769 0.00 0.00 32.81 3.41
1730 1848 7.656948 TCTGGTTTTTGCCATTTTCTATTTGAG 59.343 33.333 0.00 0.00 37.96 3.02
1731 1849 7.504403 TCTGGTTTTTGCCATTTTCTATTTGA 58.496 30.769 0.00 0.00 37.96 2.69
1732 1850 7.656948 TCTCTGGTTTTTGCCATTTTCTATTTG 59.343 33.333 0.00 0.00 37.96 2.32
1733 1851 7.734942 TCTCTGGTTTTTGCCATTTTCTATTT 58.265 30.769 0.00 0.00 37.96 1.40
1734 1852 7.301868 TCTCTGGTTTTTGCCATTTTCTATT 57.698 32.000 0.00 0.00 37.96 1.73
1735 1853 6.916360 TCTCTGGTTTTTGCCATTTTCTAT 57.084 33.333 0.00 0.00 37.96 1.98
1736 1854 6.723298 TTCTCTGGTTTTTGCCATTTTCTA 57.277 33.333 0.00 0.00 37.96 2.10
1737 1855 5.612725 TTCTCTGGTTTTTGCCATTTTCT 57.387 34.783 0.00 0.00 37.96 2.52
1738 1856 6.293571 CCATTTCTCTGGTTTTTGCCATTTTC 60.294 38.462 0.00 0.00 37.96 2.29
1739 1857 5.532032 CCATTTCTCTGGTTTTTGCCATTTT 59.468 36.000 0.00 0.00 37.96 1.82
1740 1858 5.065235 CCATTTCTCTGGTTTTTGCCATTT 58.935 37.500 0.00 0.00 37.96 2.32
1741 1859 4.505390 CCCATTTCTCTGGTTTTTGCCATT 60.505 41.667 0.00 0.00 37.96 3.16
1742 1860 3.008266 CCCATTTCTCTGGTTTTTGCCAT 59.992 43.478 0.00 0.00 37.96 4.40
1743 1861 2.368221 CCCATTTCTCTGGTTTTTGCCA 59.632 45.455 0.00 0.00 34.23 4.92
1744 1862 2.632512 TCCCATTTCTCTGGTTTTTGCC 59.367 45.455 0.00 0.00 34.23 4.52
1745 1863 4.541973 ATCCCATTTCTCTGGTTTTTGC 57.458 40.909 0.00 0.00 34.23 3.68
1749 1867 4.402616 TCCAATCCCATTTCTCTGGTTT 57.597 40.909 0.00 0.00 34.23 3.27
1768 1886 1.222115 GCGGCGTGACTATTGGATCC 61.222 60.000 9.37 4.20 0.00 3.36
1774 1892 2.180204 GCATGGCGGCGTGACTATT 61.180 57.895 32.91 0.00 0.00 1.73
1784 1902 4.854924 TCGTGGGATGCATGGCGG 62.855 66.667 2.46 0.00 0.00 6.13
1796 1914 1.423845 GCAGCGTGGTTAATCGTGG 59.576 57.895 0.00 0.00 0.00 4.94
1827 1947 1.442769 GATGGCGCATGAATATCGGT 58.557 50.000 10.83 0.00 0.00 4.69
1834 1954 1.947597 GCTTTGGGATGGCGCATGAA 61.948 55.000 10.83 0.00 36.79 2.57
1838 1958 3.063704 CAGCTTTGGGATGGCGCA 61.064 61.111 10.83 0.00 34.89 6.09
1849 1969 6.039382 ACTGAATAAAAGGAAACGTCAGCTTT 59.961 34.615 0.00 0.00 35.51 3.51
1856 1976 5.987347 TCTTCGACTGAATAAAAGGAAACGT 59.013 36.000 0.00 0.00 32.61 3.99
1872 1992 4.939052 TCCTTCTGTTTTCTCTTCGACT 57.061 40.909 0.00 0.00 0.00 4.18
1876 1996 5.823045 TGGAGTTTCCTTCTGTTTTCTCTTC 59.177 40.000 0.00 0.00 37.46 2.87
1929 2049 3.010696 TGGGGCAGTTACAATCCACATAA 59.989 43.478 0.00 0.00 0.00 1.90
1930 2050 2.578480 TGGGGCAGTTACAATCCACATA 59.422 45.455 0.00 0.00 0.00 2.29
1931 2051 1.357420 TGGGGCAGTTACAATCCACAT 59.643 47.619 0.00 0.00 0.00 3.21
1932 2052 0.774276 TGGGGCAGTTACAATCCACA 59.226 50.000 0.00 0.00 0.00 4.17
1933 2053 1.173913 GTGGGGCAGTTACAATCCAC 58.826 55.000 0.00 0.00 37.98 4.02
1934 2054 1.072266 AGTGGGGCAGTTACAATCCA 58.928 50.000 0.00 0.00 0.00 3.41
1935 2055 3.577805 ATAGTGGGGCAGTTACAATCC 57.422 47.619 0.00 0.00 0.00 3.01
1936 2056 5.914898 AAAATAGTGGGGCAGTTACAATC 57.085 39.130 0.00 0.00 0.00 2.67
1937 2057 5.891551 CCTAAAATAGTGGGGCAGTTACAAT 59.108 40.000 0.00 0.00 0.00 2.71
1938 2058 5.222171 ACCTAAAATAGTGGGGCAGTTACAA 60.222 40.000 0.00 0.00 0.00 2.41
1939 2059 4.290196 ACCTAAAATAGTGGGGCAGTTACA 59.710 41.667 0.00 0.00 0.00 2.41
1940 2060 4.851843 ACCTAAAATAGTGGGGCAGTTAC 58.148 43.478 0.00 0.00 0.00 2.50
1941 2061 6.639590 TTACCTAAAATAGTGGGGCAGTTA 57.360 37.500 0.00 0.00 0.00 2.24
1991 2111 2.089201 GACACTTATTTTGGGACGGGG 58.911 52.381 0.00 0.00 0.00 5.73
1992 2112 3.067684 AGACACTTATTTTGGGACGGG 57.932 47.619 0.00 0.00 0.00 5.28
1993 2113 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
1994 2114 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
1995 2115 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
1996 2116 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
1997 2117 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
1998 2118 7.440523 AGTAAGCTCAAGACACTTATTTTGG 57.559 36.000 0.00 0.00 0.00 3.28
1999 2119 8.988934 TGTAGTAAGCTCAAGACACTTATTTTG 58.011 33.333 0.00 0.00 0.00 2.44
2000 2120 9.555727 TTGTAGTAAGCTCAAGACACTTATTTT 57.444 29.630 0.00 0.00 0.00 1.82
2001 2121 9.555727 TTTGTAGTAAGCTCAAGACACTTATTT 57.444 29.630 0.00 0.00 0.00 1.40
2002 2122 9.726438 ATTTGTAGTAAGCTCAAGACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
2003 2123 9.726438 AATTTGTAGTAAGCTCAAGACACTTAT 57.274 29.630 0.00 0.00 0.00 1.73
2004 2124 9.555727 AAATTTGTAGTAAGCTCAAGACACTTA 57.444 29.630 0.00 0.00 0.00 2.24
2005 2125 8.345565 CAAATTTGTAGTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
2006 2126 7.499232 ACAAATTTGTAGTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
2007 2127 7.639945 ACAAATTTGTAGTAAGCTCAAGACAC 58.360 34.615 22.10 0.00 40.16 3.67
2008 2128 7.801716 ACAAATTTGTAGTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
2009 2129 8.989980 AGTACAAATTTGTAGTAAGCTCAAGAC 58.010 33.333 29.07 16.87 43.50 3.01
2013 2133 9.856488 CTCTAGTACAAATTTGTAGTAAGCTCA 57.144 33.333 31.34 18.94 44.49 4.26
2014 2134 8.809478 GCTCTAGTACAAATTTGTAGTAAGCTC 58.191 37.037 34.18 24.93 44.49 4.09
2015 2135 8.532819 AGCTCTAGTACAAATTTGTAGTAAGCT 58.467 33.333 35.84 35.84 44.49 3.74
2016 2136 8.705048 AGCTCTAGTACAAATTTGTAGTAAGC 57.295 34.615 34.31 34.31 44.49 3.09
2020 2140 9.021807 TGACTAGCTCTAGTACAAATTTGTAGT 57.978 33.333 31.29 31.29 45.63 2.73
2021 2141 9.509855 CTGACTAGCTCTAGTACAAATTTGTAG 57.490 37.037 27.29 19.19 45.63 2.74
2022 2142 8.467598 CCTGACTAGCTCTAGTACAAATTTGTA 58.532 37.037 23.91 23.91 45.63 2.41
2023 2143 7.324178 CCTGACTAGCTCTAGTACAAATTTGT 58.676 38.462 25.99 25.99 45.63 2.83
2024 2144 6.758886 CCCTGACTAGCTCTAGTACAAATTTG 59.241 42.308 16.67 16.67 45.63 2.32
2025 2145 6.630638 GCCCTGACTAGCTCTAGTACAAATTT 60.631 42.308 9.35 0.00 45.63 1.82
2026 2146 5.163395 GCCCTGACTAGCTCTAGTACAAATT 60.163 44.000 9.35 0.00 45.63 1.82
2027 2147 4.342665 GCCCTGACTAGCTCTAGTACAAAT 59.657 45.833 9.35 0.00 45.63 2.32
2028 2148 3.700038 GCCCTGACTAGCTCTAGTACAAA 59.300 47.826 9.35 0.00 45.63 2.83
2029 2149 3.288964 GCCCTGACTAGCTCTAGTACAA 58.711 50.000 9.35 0.00 45.63 2.41
2030 2150 2.423088 GGCCCTGACTAGCTCTAGTACA 60.423 54.545 9.35 8.58 45.63 2.90
2031 2151 2.232399 GGCCCTGACTAGCTCTAGTAC 58.768 57.143 9.35 5.02 45.63 2.73
2032 2152 1.202782 CGGCCCTGACTAGCTCTAGTA 60.203 57.143 9.35 0.00 45.63 1.82
2034 2154 0.466555 ACGGCCCTGACTAGCTCTAG 60.467 60.000 0.00 2.55 39.04 2.43
2035 2155 0.465824 GACGGCCCTGACTAGCTCTA 60.466 60.000 0.00 0.00 0.00 2.43
2036 2156 1.755008 GACGGCCCTGACTAGCTCT 60.755 63.158 0.00 0.00 0.00 4.09
2037 2157 1.730451 GAGACGGCCCTGACTAGCTC 61.730 65.000 0.00 0.00 0.00 4.09
2038 2158 1.755008 GAGACGGCCCTGACTAGCT 60.755 63.158 0.00 0.00 0.00 3.32
2039 2159 2.787567 GGAGACGGCCCTGACTAGC 61.788 68.421 0.00 0.00 0.00 3.42
2040 2160 0.970937 TTGGAGACGGCCCTGACTAG 60.971 60.000 0.00 0.00 0.00 2.57
2041 2161 0.970937 CTTGGAGACGGCCCTGACTA 60.971 60.000 0.00 0.00 0.00 2.59
2042 2162 2.203788 TTGGAGACGGCCCTGACT 60.204 61.111 0.00 0.00 0.00 3.41
2043 2163 1.827399 TTCTTGGAGACGGCCCTGAC 61.827 60.000 0.00 0.00 0.00 3.51
2044 2164 0.909610 ATTCTTGGAGACGGCCCTGA 60.910 55.000 0.00 0.00 0.00 3.86
2045 2165 0.035056 AATTCTTGGAGACGGCCCTG 60.035 55.000 0.00 0.00 0.00 4.45
2046 2166 0.698818 AAATTCTTGGAGACGGCCCT 59.301 50.000 0.00 0.00 0.00 5.19
2047 2167 0.811281 CAAATTCTTGGAGACGGCCC 59.189 55.000 0.00 0.00 0.00 5.80
2057 2177 2.358372 CCGGGGCCCCAAATTCTTG 61.358 63.158 40.06 20.85 35.37 3.02
2058 2178 2.038813 CCGGGGCCCCAAATTCTT 59.961 61.111 40.06 0.00 35.37 2.52
2059 2179 4.777854 GCCGGGGCCCCAAATTCT 62.778 66.667 40.06 0.00 35.37 2.40
2069 2189 1.525718 TTTTAAAGTTCGGCCGGGGC 61.526 55.000 27.83 15.61 41.06 5.80
2070 2190 1.135228 CATTTTAAAGTTCGGCCGGGG 60.135 52.381 27.83 0.00 0.00 5.73
2071 2191 1.135228 CCATTTTAAAGTTCGGCCGGG 60.135 52.381 27.83 9.99 0.00 5.73
2072 2192 1.135228 CCCATTTTAAAGTTCGGCCGG 60.135 52.381 27.83 6.80 0.00 6.13
2073 2193 1.734377 GCCCATTTTAAAGTTCGGCCG 60.734 52.381 22.12 22.12 0.00 6.13
2074 2194 2.004583 GCCCATTTTAAAGTTCGGCC 57.995 50.000 0.00 0.00 0.00 6.13
2075 2195 1.404986 GGGCCCATTTTAAAGTTCGGC 60.405 52.381 19.95 9.12 0.00 5.54
2076 2196 2.176045 AGGGCCCATTTTAAAGTTCGG 58.824 47.619 27.56 0.00 0.00 4.30
2077 2197 4.266714 TCTAGGGCCCATTTTAAAGTTCG 58.733 43.478 27.56 0.00 0.00 3.95
2078 2198 6.395629 GTTTCTAGGGCCCATTTTAAAGTTC 58.604 40.000 27.56 1.97 0.00 3.01
2079 2199 5.047590 CGTTTCTAGGGCCCATTTTAAAGTT 60.048 40.000 27.56 0.25 0.00 2.66
2080 2200 4.461431 CGTTTCTAGGGCCCATTTTAAAGT 59.539 41.667 27.56 1.16 0.00 2.66
2081 2201 4.676986 GCGTTTCTAGGGCCCATTTTAAAG 60.677 45.833 27.56 13.97 0.00 1.85
2082 2202 3.193903 GCGTTTCTAGGGCCCATTTTAAA 59.806 43.478 27.56 13.72 0.00 1.52
2083 2203 2.756207 GCGTTTCTAGGGCCCATTTTAA 59.244 45.455 27.56 8.47 0.00 1.52
2084 2204 2.291024 TGCGTTTCTAGGGCCCATTTTA 60.291 45.455 27.56 6.40 0.00 1.52
2085 2205 1.182667 GCGTTTCTAGGGCCCATTTT 58.817 50.000 27.56 5.28 0.00 1.82
2086 2206 0.039035 TGCGTTTCTAGGGCCCATTT 59.961 50.000 27.56 5.74 0.00 2.32
2087 2207 0.258774 ATGCGTTTCTAGGGCCCATT 59.741 50.000 27.56 6.67 0.00 3.16
2088 2208 1.136828 TATGCGTTTCTAGGGCCCAT 58.863 50.000 27.56 12.06 0.00 4.00
2089 2209 0.179468 GTATGCGTTTCTAGGGCCCA 59.821 55.000 27.56 9.36 0.00 5.36
2090 2210 0.468648 AGTATGCGTTTCTAGGGCCC 59.531 55.000 16.46 16.46 0.00 5.80
2091 2211 3.006537 TGATAGTATGCGTTTCTAGGGCC 59.993 47.826 0.00 0.00 0.00 5.80
2092 2212 3.988517 GTGATAGTATGCGTTTCTAGGGC 59.011 47.826 0.00 0.00 0.00 5.19
2093 2213 5.455056 AGTGATAGTATGCGTTTCTAGGG 57.545 43.478 0.00 0.00 0.00 3.53
2094 2214 6.504398 TGAAGTGATAGTATGCGTTTCTAGG 58.496 40.000 0.00 0.00 0.00 3.02
2095 2215 8.581057 AATGAAGTGATAGTATGCGTTTCTAG 57.419 34.615 0.00 0.00 0.00 2.43
2147 2267 7.697710 CGTCATGCATAATTCTAAATGTTGTGT 59.302 33.333 0.00 0.00 0.00 3.72
2148 2268 7.909641 TCGTCATGCATAATTCTAAATGTTGTG 59.090 33.333 0.00 0.00 0.00 3.33
2149 2269 7.910162 GTCGTCATGCATAATTCTAAATGTTGT 59.090 33.333 0.00 0.00 0.00 3.32
2150 2270 8.124823 AGTCGTCATGCATAATTCTAAATGTTG 58.875 33.333 0.00 0.00 0.00 3.33
2151 2271 8.213518 AGTCGTCATGCATAATTCTAAATGTT 57.786 30.769 0.00 0.00 0.00 2.71
2152 2272 7.792374 AGTCGTCATGCATAATTCTAAATGT 57.208 32.000 0.00 0.00 0.00 2.71
2153 2273 8.337532 TCAAGTCGTCATGCATAATTCTAAATG 58.662 33.333 0.00 0.00 0.00 2.32
2154 2274 8.437360 TCAAGTCGTCATGCATAATTCTAAAT 57.563 30.769 0.00 0.00 0.00 1.40
2155 2275 7.763985 TCTCAAGTCGTCATGCATAATTCTAAA 59.236 33.333 0.00 0.00 0.00 1.85
2156 2276 7.264947 TCTCAAGTCGTCATGCATAATTCTAA 58.735 34.615 0.00 0.00 0.00 2.10
2157 2277 6.805713 TCTCAAGTCGTCATGCATAATTCTA 58.194 36.000 0.00 0.00 0.00 2.10
2158 2278 5.664457 TCTCAAGTCGTCATGCATAATTCT 58.336 37.500 0.00 0.00 0.00 2.40
2159 2279 5.557893 GCTCTCAAGTCGTCATGCATAATTC 60.558 44.000 0.00 0.00 0.00 2.17
2160 2280 4.272018 GCTCTCAAGTCGTCATGCATAATT 59.728 41.667 0.00 0.00 0.00 1.40
2161 2281 3.806521 GCTCTCAAGTCGTCATGCATAAT 59.193 43.478 0.00 0.00 0.00 1.28
2162 2282 3.118992 AGCTCTCAAGTCGTCATGCATAA 60.119 43.478 0.00 0.00 0.00 1.90
2163 2283 2.428530 AGCTCTCAAGTCGTCATGCATA 59.571 45.455 0.00 0.00 0.00 3.14
2164 2284 1.206610 AGCTCTCAAGTCGTCATGCAT 59.793 47.619 0.00 0.00 0.00 3.96
2165 2285 0.605083 AGCTCTCAAGTCGTCATGCA 59.395 50.000 0.00 0.00 0.00 3.96
2166 2286 0.997932 CAGCTCTCAAGTCGTCATGC 59.002 55.000 0.00 0.00 0.00 4.06
2167 2287 1.638133 CCAGCTCTCAAGTCGTCATG 58.362 55.000 0.00 0.00 0.00 3.07
2168 2288 0.108424 GCCAGCTCTCAAGTCGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
2169 2289 1.290324 GCCAGCTCTCAAGTCGTCA 59.710 57.895 0.00 0.00 0.00 4.35
2170 2290 1.446966 GGCCAGCTCTCAAGTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2171 2291 2.164865 CTGGCCAGCTCTCAAGTCGT 62.165 60.000 22.33 0.00 0.00 4.34
2172 2292 1.447489 CTGGCCAGCTCTCAAGTCG 60.447 63.158 22.33 0.00 0.00 4.18
2173 2293 0.036022 AACTGGCCAGCTCTCAAGTC 59.964 55.000 33.06 0.00 0.00 3.01
2174 2294 0.250640 CAACTGGCCAGCTCTCAAGT 60.251 55.000 33.06 8.59 0.00 3.16
2175 2295 0.250640 ACAACTGGCCAGCTCTCAAG 60.251 55.000 33.06 15.97 0.00 3.02
2176 2296 0.535780 CACAACTGGCCAGCTCTCAA 60.536 55.000 33.06 0.00 0.00 3.02
2177 2297 1.071987 CACAACTGGCCAGCTCTCA 59.928 57.895 33.06 0.00 0.00 3.27
2178 2298 2.331132 GCACAACTGGCCAGCTCTC 61.331 63.158 33.06 14.21 0.00 3.20
2179 2299 2.282040 GCACAACTGGCCAGCTCT 60.282 61.111 33.06 14.80 0.00 4.09
2180 2300 2.138656 CTTGCACAACTGGCCAGCTC 62.139 60.000 33.06 16.65 0.00 4.09
2181 2301 2.123769 TTGCACAACTGGCCAGCT 60.124 55.556 33.06 19.23 0.00 4.24
2182 2302 1.172180 TACTTGCACAACTGGCCAGC 61.172 55.000 33.06 19.77 0.00 4.85
2183 2303 0.593128 GTACTTGCACAACTGGCCAG 59.407 55.000 31.60 31.60 0.00 4.85
2184 2304 0.106967 TGTACTTGCACAACTGGCCA 60.107 50.000 4.71 4.71 0.00 5.36
2185 2305 1.247567 ATGTACTTGCACAACTGGCC 58.752 50.000 0.00 0.00 30.84 5.36
2186 2306 4.497473 TTTATGTACTTGCACAACTGGC 57.503 40.909 0.00 0.00 30.84 4.85
2187 2307 6.312399 TCTTTTATGTACTTGCACAACTGG 57.688 37.500 0.00 0.00 30.84 4.00
2188 2308 7.584108 TCATCTTTTATGTACTTGCACAACTG 58.416 34.615 0.00 0.00 30.84 3.16
2189 2309 7.744087 TCATCTTTTATGTACTTGCACAACT 57.256 32.000 0.00 0.00 30.84 3.16
2190 2310 7.860373 TGTTCATCTTTTATGTACTTGCACAAC 59.140 33.333 0.00 0.00 30.84 3.32
2191 2311 7.935520 TGTTCATCTTTTATGTACTTGCACAA 58.064 30.769 0.00 0.00 30.84 3.33
2192 2312 7.503521 TGTTCATCTTTTATGTACTTGCACA 57.496 32.000 0.00 0.00 0.00 4.57
2193 2313 9.708222 CTATGTTCATCTTTTATGTACTTGCAC 57.292 33.333 0.00 0.00 0.00 4.57
2194 2314 9.665719 TCTATGTTCATCTTTTATGTACTTGCA 57.334 29.630 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.