>input_sequence_86123
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----------------------------------------ATGGACGTTACCTTTGAGGCGAAGAACGGCTCGTTCACCC
TAGAGGTGTGGTACTTCGCGACCGTGAAGCAGATGAAGGAGATGATCCACAAGCGCTACCGCCACCTCCCGGTGAAGGCC
CAGCGGCTTTTCTTCAATGGCAAGGAGCTTGACGACGACCGCAATACCGAGCACTACGGTATCATACAGGGGTCAAGCAT
CCGCCTTGAACTGCTGGCAAGCTTGACCATGTTACCTTTGTGA-------------------------------------
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>chr3B_1_TraesCS3B01G611900
TATCTATTTTCTGCAAAATATTTTCTTTCGCATCCAAACAAATAGGGAACTCTAGAAGCTTCGTTGAGTTTCAAATTTCT
TTTCAGCAATTGTTTCGGCGGGATTAGTTGAGAAACAATCCCAGCCCTTCATGTTTTTTCTCTCTGCCGAAAACCCTAGA
CCCTACCCAGCCGACCCTCTTGGCCTATATAAACTCACTCTTCATCTATTGCCCATGCACCCCCCTCCACGACCAAGAGA
CCAA-GGAAGAATACCCTGCCATGGCGCAGGACTAGAAGGAAGCTTGTTCGTTTACTTCATCTTCATTATTAAGCTGAAC
CTCGACCTGTCTGCACCAAGCTTGACTATCTTCACCTTCACGGCTAGGTAGGTAACCATA----CAAGAAGGCAAGCTAG
AGGAACTCACCTTGTTGCAATCTATCAGGGCCGAAACGTTTATTTTTATCTTTTGATATT-GGTCATG---------TGC
CTCTGTAGTTTATCCATGATGGAGCTACCTAGGTTTTCTAATCTGGCCTCCACTTATTTAGTA----TTGACGACCATAT
ATTCTTGGCTTCCATCTAAT-----TTAGGCGCCACATGGCGATGTCTGGTTAATTCTTCCACTCTTTTGA-TTTTGGGC
CTACCTTTGTCATTCTTTGTCATC---GGCACCTCCGATAGAGGTTGATATCAATCTCTCCAGGATAGGTCGATCAGATG
GGTTATTTTTACTCGAAT-----------ACGTTAGGATGCTCATTCTCTTGATCATGGAATAGATTGCATTTTGTTGGT
TGAATAAGTCGTGTCTTGCAC--ATAGTAGTTTTTATCTGCACCA--TGTAGTCGTTTTTATTGCGTGAGCTTTATTCAT
ATTTATCAGTTGGCATTCCTACACATGCATGATAATGATTTCAACATAAATTAGAAATTTACATAATTGCATTCCC----
----------------------AC---TATTTTGTAAGTGGAATTTATGACCTATAGGAATATC--------GGTCTACA
GGTAGAGAAGAGACGAGTTAGAGACGGAAGGGCGGCCACCATGGACGTTACCTTTGAGGCGAAGAACGGCTCGTTCACCC
TAGAGGTGTGGTACTTCGCGACCGTGAAGCAGATGAAGGAGATGATCCACAAGCGCTACCGCCACCTCCCGGTGAAGGCC
CAGCGGCTTTTCTTCAATGGCAAGGAGCTTGACGACGACCGCAATACCGAGCACTACGGTATCATACAGGGGTCAAGCAT
CCGCCTTGAACTGCTGGCAAGCTTGACCATGTTACCTTTGTGATTTGTGCGT----TTCGTGTTGTCG----ACAAGGAG
GAAGCAACGGATAGGAATAATAACTTCACCAC-------TTCTCTATTTTACGCATGCATGCACTGTACTATACTGCTCC
AAGTATGTACGGAATAAATCAGA-----GTCTTCGCCTCAGCCAGCTGCGACGCCC-------CTTGCCGCTATTGAGTC
TGTATGCT----------CAGGTTACGTGCGTGCATGCATGCACACATGCATCATCGAGTAATTCCTTGCATTTCTTCTT
TTGTTTTGACGATGCTTGCTCGTCTACCAAAATTTTCTTCCTAAGCTCCAATGCGGCCTTCCCCTGCTGCTCCAATGGAC
ACAGCGGACCGAAGATGCAGGCCCTTCTTCGTCGTGGCAGCCACTGGCCATGTCCCGTCTTGCCGCTGCTCACCGGAATC
AAGTGTAATTTAGTGAATTGACACAGGGAAAGGGGCAACAGGTAGAAGAAGACTCAGGTCACGAGCTACCATGTTTCCTT
TTATTCACTCAAATAGAAAATGGCAAAAACCAGAGAAATGGGATTGGATCCAATAGTCACGCCGCCATGCATCCCACGAT
TAAC--CACGCTGCCGTTTCCTTTATACCGATATTCATGCGCCATCCCAAAGCTGACGTTTCCTTTTATTCAGTCGAAGA
GAAAACAGAAGGAAACTCCAATTCCTGCGTAAATATGTACGTGCCATTTTATGTGGATTGTAACTGCCCCACTATTTTAG
GTAAATGCAATCAAATTCAACTTTTAGTACCCCCGTCCCAAAATAAGTGTCTTGAGCTTACTACAAATTTGTACTAGAGC
TAGTCAGGGCCGTCTCCAAGAATTTGGGGCCCCGGCCGAACTTTAAAATGGGCCCTAGAAACGCATACTATCACTTCATT
ATATAATTTTGAATATTTGTTATCTTACACAACATTTAGAATTATGCATGACGACTTGAGAGCTGGCCAGTTGTGCAAGT
ACATAAAAGATGAACATAGAAAACTAATATAATTATTCAGTA
>chr3D_1
TATCTATTTTCTGGAAAATATTTTCTTTCGTATCCAAACAAATAGGGAACTGTAGAAGCTTCGTTGAGTTTCACATTTCT
TTTCAACAATTGTTTCGGCGGGATTAATTGAGAAA-AATCCCAGCCCTTCATGTTATTTCTCTCTGCGGAAAACCCTAGA
CCCTACCCAGCCGACCCTCTTGGCCTATATAAACCCACTCTTCATCTATTGCCCATGCACCCCTCTCCACGACCAAGAGA
CCAAAGGAAGAATACCCTGCCATGGCTCAGGACTAGAAGGAAGCTTGGTCGTTTACTTCATCTTCAGTATTAAGCTGAAC
CTCGACCTGTCTGCACCAAGCTTGACTATCTTCACCTTCAAGGCTAGGTAA----TCATC----CAAGAACGCAAGCTAG
AGGAACTCACTTTGTTGCAGTCTATCATGGCCGAAATGTTTATCTTTATCTTTTGATATTGGGTCATG---------TGC
CTCTGTAGTTTATCCATGAATAAGCTACCTAGGTTTTCTAATCTG-CCCCCAGTTATCTAGTT----TTGAGGACTATAT
ATTATTGGCCTCCATCTAAT-----TTAGGCGCCACATGGGAATGTCTGGTTAATTCTTTCACTCATTTGATTTTTGGGC
CTACCTTTGTCATTCTTTGTCATTGTTGGCACCTCCGATAGAGGTTTGTATCAATCTCTCTCTAATAGATCGATCAGATG
TGTTATTTTTACTGCCATGGATCAACCCCAC--------GTTCATTCTCTTGATCATGTAATAGATTGCATTTTGTTGGT
TGAATAAGTCGTGTCTTGCAGATATAGTAGTTTTTATCTGCACCA--TGTAGTCGTTTTTATTGCGCGAGCTTTATTCAT
ATTTATCATTTGGCATTCCTACACATGCATGATAATGATTTCAACATAAATTAGAAATTTTAATAATTATGCTTCACTCT
ACTGTTTATATTTAGTATTCCAAC---TATTTTGTAAGTGGAATTTATGACCTATAGGAATAT--------TGGTCTACA
GGTAGAGAAGAGACGAGTCAGATAGGGAACGGTCGCCGGCATGGATGTTACTTTTGAGGCGAGGAACGGCT--TTCACCC
TAGAGGTGTGGTACTTCGCGACCGTGAGGCAGA---------TGAACCACAAGCGCTACACCCATTTCCCGGTGAAGGCA
CAGCGGCTTTTCTTCCAGGGCGAGGAGCTTGACGACGACCGCAATACCGAGCACTACGGTATCATCCAGGGGTCACGCGT
CCGCCTCGACCTGCCTGCAATCTTGACCACGTTTCCTTTGTTATTTTTGCGT----TCCATGCTGTCG----GCAAGGAG
GAAGCACCAGATAGGAATAATAACCTAAGTGTAGGATTTTTG-------------------------------CTGCTCC
AAGTATGTAAATCAGAGTCTCCACTTGCGTCTCCGCCTCAGCCAGCTGCGACGCCCCTTCCCGCTTGCCGCTATTGAGTC
TGTATGCTGTTACGTTAACAGGTTACGTGCGTGCATGCATGCACGCTTGCATCATTGAGGAATTCCTTGCATTTCTTCTT
CTGTTTTGACGATGCTTGCCCGTCTAC-----------------------------------------------------
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-----------------------CAAGAACGAGAGAAATGGGATTAGATCC-ATAGTCACGGCGCCATGCATCTCACGAT
TAACTCCACGCTGCCGTTTCCTTTATTCCGATAATCACGCGCCATCCC-AAGCTGCCGTTTCCTTTTATTCTGTCAAAGA
GAAAACAGAAGGAAACTCCAATTCCTGCGTAAATATGTACGTGCCATT-------------AACTGCCCCACGATTTTAG
GTAAATGCAATCAAATTCAACTTTTAGTAC--------------------------------------------------
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>chr3A_1
TATCTATTTTCTGGAAAATATTTTCTTTCGTATCCAAACAAATAGGGAACTGTAGAAGCTTCGTTGAGTTTCACATTTCT
TTTCAACAATTGTTTCGGCGGGATTAATTGAGAAACAATCCCAGCCCTTAATGTTATTTCTCTCTGCCAAAAACCCTAGA
---------------CCTCTTGGCCTATATAAACTCACTCTTCATCTACTGCCCATGCACCCCTCTCCACGACCAAGAGA
CCAA-GGAAGAATACCCTGCCATGGCGCAGGACTAGAAGGAAGATTGGTCGTTTTCTTCATCTTCACTATTAAGCTGAAC
CTCGACCTGTCTGCACCAAGCTTGAATATCTTCACCTTCACGGCTAGGTAG----CCATC----CAAGAACGCAAGCTAG
AGGAACTCACATTGTTGCAATCTATCATGGCCGGAATGTTTATCTTTATCTTTTGATATT-GGTCATG---------TGC
CTCTGTAGTTTATCAATGAATAAGCTACCTAGGTTTTCTAATCTGGCATCCACTTATTTAGTT----TTGACGACCATAT
ATTCTTGGCTTCCATCTAAT-----TTAGGCGCCACATGGGAAGGTCTGGTTAATTCTTCCACTCTTTTGA-TTTTGGGC
CTACCTTTGCCATACTTTGTCATTGGCACCTTG---GATAGAGGTTGGTATCAATCTCTCTAGGATAGATCGATCA-ATG
GGTTATTTTTACTGGAAT-----------ACGTTAGGATGTTCATTCTCTTAATCATGTAATAAATTGCATTTTGTTGGT
TGAATAAGTCGTGTCTTGCACATAGTAGT-TTTTTATCTGCACCG--TGTAGTGGTTTTTATTGTGCGAGCTTTATTCAT
ATTTATCAGTTGGCATTCCTACACATGCATGATAATGTTTTCAACATAACTTAGAAATTTTGATAATTATGTTCAAGTCC
ACTGTTTATATTTAGCATTTCAAC---TATTTTGTAAGTCCAATTTATGACCTATAGGAATAT--------TGGTGTACA
GGTAGAGAAGAGGTGAGTCAGAGAGGGAACGGCGGCCGGCTTGGACGTTACTTTTGAGGCAAGGAATGGCTCGTTCACCC
TAGAAGTGTGGTACTTTGCGACCGTGAAGCAGATGAAGGAGATGATCCACAAGCGCTACCGCCACCTCCCGGTGAAGGCG
CAGCGGCTTTTCCTCAATGGCAAGGAGCTTGACGACGACCGCAATACCGAGCACTACGGTATCATATAGGGTTCATGCAT
CCGCCTCGACCTGCCTGCAAGCGTGGCCATGT------------------------------------------------
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>chr7B_339
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-------------------GCTTGACTATCTTCACCTTCACGGCAAGGTAA----CCATGCATGCAAGAACCCAAGCTAG
ACCTC--------GTTGCAATCTATCATGGCCGAAACGTTTATATTTATCTTTTGATAGGAGTATTTGTCATGTGCATGC
CTCTGTAGCTTATCCATGAATAAGC---------TTTCTAATCTGGCCTCCACTTATTTAGTTAACTTTGACGACCATAT
ATTCTTGGCCTCAATCTAATCTAATTTAGGCGCCACATGGCAATGCCTGGTTAATTCGTCCACTCATCTGATTTCG----
------TTGTCATTCTCTGTCATTGGCA------------------------------TCTAGTATAGATCGATCAGATG
GGTTATTTTTAATGGAACAGATGAACCCCACGTTAGGATGTTCATTCTCTTGATCATGTAATAGATTGCATTTTGTTGGT
TGAATAAGCCGTTTCTTGCACATACTAGTA--TTTATCTGCACCACATGTAGTGGTT--------------TTTATTCAT
ATTTATCAATTGGCATTCCTACACATGCATGATAATGTTTTCAACATAAATGAGTATAGATTTTG---------------
ACTGTTTGTACTTAGCATTCCAACTAGTATTTTGTAAGTCCAATTTTTGACCTAATAGCTAGGGATATTGGTGGTCTACA
GGTAGAGAATAGACGAGAGTGAGAG---------------ATGGACGTTACTTTTGAGGCTCGGAACGGCTCCTTCACCC
TAGAGGTGTGGTACTTTGCGATGGTGAAGCAGATGAAGGAGATGATCTACAAGCGCTACCGCCACTTCCCGGTGAGGGCA
CAGCGGCTTGTCTTCCAGGGCAAGGAGCTTGAAGACGACCGCAATACCGAG------------------GGGTCACGCAT
CCGTCTCGACCTGCCTGAAAGCTTGACCATGTATCCTTTGTGATTTGTGCGTGCGTTTCGTCTTGTCGGCAAGCAAGGAG
GAAGCACCGGATCGATACAGGGGAATAGAATTTAATAATTTCTCTATTTTACGCATGCATGCAAGTATG-----------
--------------TAAATCAGA-----GT---------------------------------CTTGCCGCTATCGAGTC
TGTATGCTGTTACACTAGCAGGTTAATTACG----TGCATGCACACATGCATCATCGAGTAATTCCTTGCATTTCTTCTT
CTGTTTTGACGATG------------------------------------------------------------------
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>SNPs
-------------S----------------S--------------------S---------------------S------
-----S--------------------S----------------------------S------------------------
---------------------------------------------------------------S----------------
-----------------------------------------------S------------------S-------------
---------------------------------------------------SSSS----S----------S---------
----------S----------------S---------------S------------------------------------
-------------------SSS----------------------------------------S-----------------
-----------------------------------------S--------------------------------------
-----------------------S-----------------------S------------S-------S-----------
-------------S--------------------------S-----------------S---------------------
------------------------------------------------------------------S-------------
------------------------------------------------------------SS------SSS----S----
---------------------------------------------------------------S----------------
------------------S-----S----S-------SS------------S----------S-----------------
-------------------------------------------------------------------------------S
---------------------------------------------------------------------------S----
------S--S----SS-----------------S--------------------------------------S-------
------S-----------------S-S-SSSS-------------------------------SSSSSSSSSS-------
---------SSSS-------------------S-----------------------------------------------
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S------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---S---S--------------S-----S---------S-----------S------
--------------------------S------S---S----------S------S---------------S---S----
------------------------------------------------SSSSSSSSSSSSS-----------S-------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_373
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---------------------------------ACCTTCACGGCTAGGTAGGT---------------------------
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>reverse_2165
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----CAGGGCCGTCTCCAAGAATT--------------------------------------------------------
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