Multiple sequence alignment - TraesCS3B01G611800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G611800 chr3B 100.000 3174 0 0 1 3174 829290213 829287040 0.000000e+00 5862.0
1 TraesCS3B01G611800 chr3B 91.859 995 48 13 972 1949 829273403 829274381 0.000000e+00 1358.0
2 TraesCS3B01G611800 chr3B 84.892 278 19 11 662 929 829273141 829273405 3.140000e-65 259.0
3 TraesCS3B01G611800 chr3A 85.145 1582 107 63 513 2026 746350878 746352399 0.000000e+00 1502.0
4 TraesCS3B01G611800 chr3A 84.681 1175 70 56 706 1791 746364418 746363265 0.000000e+00 1072.0
5 TraesCS3B01G611800 chr3A 91.399 779 38 10 1034 1791 746313174 746313944 0.000000e+00 1040.0
6 TraesCS3B01G611800 chr3A 92.244 361 17 6 2054 2406 746352397 746352754 4.730000e-138 501.0
7 TraesCS3B01G611800 chr3A 95.668 277 12 0 2898 3174 746353386 746353662 2.250000e-121 446.0
8 TraesCS3B01G611800 chr3A 87.164 335 38 3 2409 2738 746352863 746353197 2.990000e-100 375.0
9 TraesCS3B01G611800 chr3A 92.893 197 14 0 1285 1481 315281077 315281273 1.440000e-73 287.0
10 TraesCS3B01G611800 chr3A 90.404 198 18 1 1285 1481 314776782 314776979 3.140000e-65 259.0
11 TraesCS3B01G611800 chr3D 87.453 1331 95 32 1241 2549 611568263 611566983 0.000000e+00 1467.0
12 TraesCS3B01G611800 chr3D 92.453 583 19 13 1241 1807 611558763 611559336 0.000000e+00 809.0
13 TraesCS3B01G611800 chr3D 96.751 277 9 0 2898 3174 611566661 611566385 2.230000e-126 462.0
14 TraesCS3B01G611800 chr3D 77.110 782 68 54 521 1242 611569079 611568349 1.810000e-92 350.0
15 TraesCS3B01G611800 chr3D 88.285 239 16 9 1004 1242 611558451 611558677 3.120000e-70 276.0
16 TraesCS3B01G611800 chr3D 85.246 183 11 7 6 182 611569514 611569342 1.170000e-39 174.0
17 TraesCS3B01G611800 chr3D 82.873 181 14 11 16 191 611557770 611557938 2.550000e-31 147.0
18 TraesCS3B01G611800 chr3D 80.357 168 11 10 524 670 611553309 611553475 1.200000e-19 108.0
19 TraesCS3B01G611800 chrUn 100.000 386 0 0 1460 1845 480633103 480633488 0.000000e+00 713.0
20 TraesCS3B01G611800 chr6A 84.989 453 52 6 1035 1481 361910005 361909563 2.250000e-121 446.0
21 TraesCS3B01G611800 chr5B 86.782 174 11 7 1035 1202 676859701 676859534 1.940000e-42 183.0
22 TraesCS3B01G611800 chr5B 85.632 174 13 7 1035 1202 676707932 676707765 4.210000e-39 172.0
23 TraesCS3B01G611800 chr1B 89.516 124 10 1 1679 1802 663374746 663374626 1.520000e-33 154.0
24 TraesCS3B01G611800 chr1A 78.571 168 32 4 278 444 495135234 495135070 1.200000e-19 108.0
25 TraesCS3B01G611800 chr1A 88.462 78 7 2 1232 1308 467184852 467184928 3.370000e-15 93.5
26 TraesCS3B01G611800 chr1A 77.778 126 28 0 1478 1603 467185492 467185617 9.440000e-11 78.7
27 TraesCS3B01G611800 chr2B 94.203 69 3 1 1735 1802 680916011 680915943 1.560000e-18 104.0
28 TraesCS3B01G611800 chr1D 88.462 78 7 2 1232 1308 367848036 367848112 3.370000e-15 93.5
29 TraesCS3B01G611800 chr1D 77.778 126 28 0 1478 1603 367848615 367848740 9.440000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G611800 chr3B 829287040 829290213 3173 True 5862.000000 5862 100.000000 1 3174 1 chr3B.!!$R1 3173
1 TraesCS3B01G611800 chr3B 829273141 829274381 1240 False 808.500000 1358 88.375500 662 1949 2 chr3B.!!$F1 1287
2 TraesCS3B01G611800 chr3A 746363265 746364418 1153 True 1072.000000 1072 84.681000 706 1791 1 chr3A.!!$R1 1085
3 TraesCS3B01G611800 chr3A 746313174 746313944 770 False 1040.000000 1040 91.399000 1034 1791 1 chr3A.!!$F3 757
4 TraesCS3B01G611800 chr3A 746350878 746353662 2784 False 706.000000 1502 90.055250 513 3174 4 chr3A.!!$F4 2661
5 TraesCS3B01G611800 chr3D 611566385 611569514 3129 True 613.250000 1467 86.640000 6 3174 4 chr3D.!!$R1 3168
6 TraesCS3B01G611800 chr3D 611557770 611559336 1566 False 410.666667 809 87.870333 16 1807 3 chr3D.!!$F2 1791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 479 0.035820 TAAATCCGTGCCTCCACACC 60.036 55.0 0.0 0.0 42.17 4.16 F
341 499 0.039165 CGCGTATCTCATAGCTGGCA 60.039 55.0 0.0 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2397 0.603569 ATGGCGTCACCGGATCTATC 59.396 55.0 9.46 0.0 43.94 2.08 R
2321 2774 0.037326 GACTGACATTGGTGAGGCGA 60.037 55.0 0.00 0.0 31.91 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 56 4.041740 CATACGCCAGTAGTATGTGTGT 57.958 45.455 7.87 0.00 43.71 3.72
59 68 5.468540 AGTATGTGTGTATGATACGCCAT 57.531 39.130 13.06 15.87 38.38 4.40
60 69 5.230182 AGTATGTGTGTATGATACGCCATG 58.770 41.667 20.43 0.00 38.38 3.66
109 123 1.145819 GATGCTCTGCTCTGGGGTC 59.854 63.158 0.00 0.00 0.00 4.46
162 177 7.769272 TCAACAAGTTTGATTTGGTTGATTC 57.231 32.000 0.00 0.00 0.00 2.52
173 188 1.134068 TGGTTGATTCAACACGGACCA 60.134 47.619 26.27 14.88 45.11 4.02
191 206 4.036971 GGACCATGCTGACAGTACTAGTAG 59.963 50.000 1.87 0.00 0.00 2.57
192 207 4.856509 ACCATGCTGACAGTACTAGTAGA 58.143 43.478 1.87 0.00 0.00 2.59
193 208 5.450453 ACCATGCTGACAGTACTAGTAGAT 58.550 41.667 1.87 0.00 0.00 1.98
194 209 6.602278 ACCATGCTGACAGTACTAGTAGATA 58.398 40.000 1.87 0.00 0.00 1.98
195 210 6.487331 ACCATGCTGACAGTACTAGTAGATAC 59.513 42.308 1.87 3.33 0.00 2.24
196 211 6.347806 CCATGCTGACAGTACTAGTAGATACG 60.348 46.154 1.87 3.23 0.00 3.06
197 212 5.668471 TGCTGACAGTACTAGTAGATACGT 58.332 41.667 1.87 0.00 0.00 3.57
198 213 5.522824 TGCTGACAGTACTAGTAGATACGTG 59.477 44.000 1.87 6.16 0.00 4.49
200 215 4.505556 TGACAGTACTAGTAGATACGTGCG 59.494 45.833 1.87 0.00 0.00 5.34
201 216 4.437239 ACAGTACTAGTAGATACGTGCGT 58.563 43.478 1.87 2.05 0.00 5.24
202 217 5.592054 ACAGTACTAGTAGATACGTGCGTA 58.408 41.667 1.87 6.91 34.87 4.42
204 219 5.460091 CAGTACTAGTAGATACGTGCGTACA 59.540 44.000 1.87 0.00 33.01 2.90
205 220 6.145209 CAGTACTAGTAGATACGTGCGTACAT 59.855 42.308 1.87 0.00 33.01 2.29
206 221 5.998454 ACTAGTAGATACGTGCGTACATT 57.002 39.130 3.59 0.00 33.01 2.71
207 222 7.867909 AGTACTAGTAGATACGTGCGTACATTA 59.132 37.037 1.87 0.00 33.01 1.90
211 369 6.732154 AGTAGATACGTGCGTACATTAACAT 58.268 36.000 6.59 0.00 33.01 2.71
214 372 7.385668 AGATACGTGCGTACATTAACATTAC 57.614 36.000 6.59 0.00 33.01 1.89
218 376 6.301108 ACGTGCGTACATTAACATTACAAAG 58.699 36.000 4.09 0.00 0.00 2.77
240 398 9.994432 CAAAGAATGTGAGTAATACAGAAATCC 57.006 33.333 0.00 0.00 0.00 3.01
241 399 9.739276 AAAGAATGTGAGTAATACAGAAATCCA 57.261 29.630 0.00 0.00 0.00 3.41
242 400 9.739276 AAGAATGTGAGTAATACAGAAATCCAA 57.261 29.630 0.00 0.00 0.00 3.53
243 401 9.167311 AGAATGTGAGTAATACAGAAATCCAAC 57.833 33.333 0.00 0.00 0.00 3.77
244 402 7.865706 ATGTGAGTAATACAGAAATCCAACC 57.134 36.000 0.00 0.00 0.00 3.77
246 404 5.589050 GTGAGTAATACAGAAATCCAACCCC 59.411 44.000 0.00 0.00 0.00 4.95
247 405 5.491078 TGAGTAATACAGAAATCCAACCCCT 59.509 40.000 0.00 0.00 0.00 4.79
248 406 6.002653 AGTAATACAGAAATCCAACCCCTC 57.997 41.667 0.00 0.00 0.00 4.30
249 407 4.946160 AATACAGAAATCCAACCCCTCA 57.054 40.909 0.00 0.00 0.00 3.86
251 409 3.611025 ACAGAAATCCAACCCCTCAAA 57.389 42.857 0.00 0.00 0.00 2.69
252 410 3.230976 ACAGAAATCCAACCCCTCAAAC 58.769 45.455 0.00 0.00 0.00 2.93
253 411 3.230134 CAGAAATCCAACCCCTCAAACA 58.770 45.455 0.00 0.00 0.00 2.83
254 412 3.005791 CAGAAATCCAACCCCTCAAACAC 59.994 47.826 0.00 0.00 0.00 3.32
256 414 1.158007 ATCCAACCCCTCAAACACCT 58.842 50.000 0.00 0.00 0.00 4.00
257 415 0.184933 TCCAACCCCTCAAACACCTG 59.815 55.000 0.00 0.00 0.00 4.00
258 416 1.463553 CCAACCCCTCAAACACCTGC 61.464 60.000 0.00 0.00 0.00 4.85
259 417 1.528309 AACCCCTCAAACACCTGCG 60.528 57.895 0.00 0.00 0.00 5.18
260 418 2.672996 CCCCTCAAACACCTGCGG 60.673 66.667 0.00 0.00 0.00 5.69
261 419 2.429930 CCCTCAAACACCTGCGGA 59.570 61.111 0.00 0.00 0.00 5.54
262 420 1.966451 CCCTCAAACACCTGCGGAC 60.966 63.158 0.00 0.00 0.00 4.79
263 421 2.317609 CCTCAAACACCTGCGGACG 61.318 63.158 0.00 0.00 0.00 4.79
264 422 2.954753 CTCAAACACCTGCGGACGC 61.955 63.158 10.13 10.13 42.35 5.19
265 423 4.368808 CAAACACCTGCGGACGCG 62.369 66.667 3.53 3.53 45.51 6.01
296 454 4.314440 GCGGACACTGACCAGGCA 62.314 66.667 1.82 0.00 0.00 4.75
297 455 2.357517 CGGACACTGACCAGGCAC 60.358 66.667 1.82 0.00 0.00 5.01
298 456 2.872388 CGGACACTGACCAGGCACT 61.872 63.158 1.82 0.00 43.88 4.40
299 457 1.451936 GGACACTGACCAGGCACTT 59.548 57.895 1.82 0.00 34.60 3.16
300 458 0.603975 GGACACTGACCAGGCACTTC 60.604 60.000 1.82 0.00 34.60 3.01
301 459 0.603975 GACACTGACCAGGCACTTCC 60.604 60.000 1.82 0.00 34.60 3.46
303 461 0.976641 CACTGACCAGGCACTTCCTA 59.023 55.000 1.82 0.00 45.52 2.94
304 462 1.347707 CACTGACCAGGCACTTCCTAA 59.652 52.381 1.82 0.00 45.52 2.69
305 463 2.054799 ACTGACCAGGCACTTCCTAAA 58.945 47.619 1.82 0.00 45.52 1.85
307 465 3.274288 CTGACCAGGCACTTCCTAAATC 58.726 50.000 0.00 0.00 45.52 2.17
309 467 1.065418 ACCAGGCACTTCCTAAATCCG 60.065 52.381 0.00 0.00 45.52 4.18
310 468 1.065418 CCAGGCACTTCCTAAATCCGT 60.065 52.381 0.00 0.00 45.52 4.69
313 471 0.733150 GCACTTCCTAAATCCGTGCC 59.267 55.000 0.00 0.00 43.68 5.01
314 472 1.679032 GCACTTCCTAAATCCGTGCCT 60.679 52.381 0.00 0.00 43.68 4.75
315 473 2.280628 CACTTCCTAAATCCGTGCCTC 58.719 52.381 0.00 0.00 0.00 4.70
316 474 1.209747 ACTTCCTAAATCCGTGCCTCC 59.790 52.381 0.00 0.00 0.00 4.30
317 475 1.209504 CTTCCTAAATCCGTGCCTCCA 59.790 52.381 0.00 0.00 0.00 3.86
318 476 0.539986 TCCTAAATCCGTGCCTCCAC 59.460 55.000 0.00 0.00 38.62 4.02
319 477 0.251916 CCTAAATCCGTGCCTCCACA 59.748 55.000 0.00 0.00 42.17 4.17
320 478 1.369625 CTAAATCCGTGCCTCCACAC 58.630 55.000 0.00 0.00 42.17 3.82
321 479 0.035820 TAAATCCGTGCCTCCACACC 60.036 55.000 0.00 0.00 42.17 4.16
322 480 2.764637 AAATCCGTGCCTCCACACCC 62.765 60.000 0.00 0.00 42.17 4.61
328 486 4.157120 GCCTCCACACCCGCGTAT 62.157 66.667 4.92 0.00 0.00 3.06
329 487 2.106332 CCTCCACACCCGCGTATC 59.894 66.667 4.92 0.00 0.00 2.24
330 488 2.423898 CCTCCACACCCGCGTATCT 61.424 63.158 4.92 0.00 0.00 1.98
331 489 1.065928 CTCCACACCCGCGTATCTC 59.934 63.158 4.92 0.00 0.00 2.75
332 490 1.663379 CTCCACACCCGCGTATCTCA 61.663 60.000 4.92 0.00 0.00 3.27
333 491 1.040893 TCCACACCCGCGTATCTCAT 61.041 55.000 4.92 0.00 0.00 2.90
334 492 0.671796 CCACACCCGCGTATCTCATA 59.328 55.000 4.92 0.00 0.00 2.15
335 493 1.335964 CCACACCCGCGTATCTCATAG 60.336 57.143 4.92 0.00 0.00 2.23
336 494 0.314302 ACACCCGCGTATCTCATAGC 59.686 55.000 4.92 0.00 0.00 2.97
337 495 0.598562 CACCCGCGTATCTCATAGCT 59.401 55.000 4.92 0.00 0.00 3.32
338 496 0.598562 ACCCGCGTATCTCATAGCTG 59.401 55.000 4.92 0.00 0.00 4.24
339 497 0.109086 CCCGCGTATCTCATAGCTGG 60.109 60.000 4.92 0.00 0.00 4.85
340 498 0.734253 CCGCGTATCTCATAGCTGGC 60.734 60.000 4.92 0.00 0.00 4.85
341 499 0.039165 CGCGTATCTCATAGCTGGCA 60.039 55.000 0.00 0.00 0.00 4.92
342 500 1.423395 GCGTATCTCATAGCTGGCAC 58.577 55.000 0.00 0.00 0.00 5.01
343 501 1.937108 GCGTATCTCATAGCTGGCACC 60.937 57.143 0.00 0.00 0.00 5.01
344 502 1.341209 CGTATCTCATAGCTGGCACCA 59.659 52.381 0.00 0.00 0.00 4.17
345 503 2.028658 CGTATCTCATAGCTGGCACCAT 60.029 50.000 0.00 0.00 0.00 3.55
346 504 3.193479 CGTATCTCATAGCTGGCACCATA 59.807 47.826 0.00 0.00 0.00 2.74
347 505 4.142071 CGTATCTCATAGCTGGCACCATAT 60.142 45.833 0.00 0.00 0.00 1.78
348 506 3.690475 TCTCATAGCTGGCACCATATG 57.310 47.619 0.00 0.00 0.00 1.78
349 507 2.974794 TCTCATAGCTGGCACCATATGT 59.025 45.455 0.00 0.00 0.00 2.29
350 508 3.007290 TCTCATAGCTGGCACCATATGTC 59.993 47.826 0.00 0.00 0.00 3.06
351 509 2.038952 TCATAGCTGGCACCATATGTCC 59.961 50.000 0.00 0.76 28.68 4.02
352 510 1.506025 TAGCTGGCACCATATGTCCA 58.494 50.000 0.00 5.34 34.54 4.02
353 511 0.848735 AGCTGGCACCATATGTCCAT 59.151 50.000 1.24 0.00 35.01 3.41
354 512 2.057140 AGCTGGCACCATATGTCCATA 58.943 47.619 1.24 0.00 35.01 2.74
355 513 2.646297 AGCTGGCACCATATGTCCATAT 59.354 45.455 1.24 0.00 35.01 1.78
356 514 2.751259 GCTGGCACCATATGTCCATATG 59.249 50.000 16.82 16.82 46.31 1.78
369 527 5.172460 TGTCCATATGAATTCATGCAACG 57.828 39.130 27.59 12.52 37.15 4.10
370 528 4.639755 TGTCCATATGAATTCATGCAACGT 59.360 37.500 27.59 5.99 37.15 3.99
371 529 4.971830 GTCCATATGAATTCATGCAACGTG 59.028 41.667 27.59 16.01 37.15 4.49
372 530 4.036616 TCCATATGAATTCATGCAACGTGG 59.963 41.667 27.59 22.05 37.15 4.94
373 531 4.202040 CCATATGAATTCATGCAACGTGGT 60.202 41.667 27.59 3.84 37.15 4.16
374 532 5.008514 CCATATGAATTCATGCAACGTGGTA 59.991 40.000 27.59 6.90 37.15 3.25
375 533 3.822594 TGAATTCATGCAACGTGGTAC 57.177 42.857 3.38 0.00 0.00 3.34
376 534 3.181511 ATGAATTCATGCAACGTGGTACG 60.182 43.478 20.11 0.00 40.50 3.67
377 535 5.628075 ATGAATTCATGCAACGTGGTACGT 61.628 41.667 20.11 0.56 45.69 3.57
378 536 6.364545 ATGAATTCATGCAACGTGGTACGTA 61.365 40.000 20.11 0.00 44.15 3.57
379 537 8.091237 ATGAATTCATGCAACGTGGTACGTAG 62.091 42.308 20.11 0.00 44.15 3.51
387 545 2.925578 CGTGGTACGTAGATGACCAA 57.074 50.000 8.68 0.00 44.66 3.67
388 546 3.220507 CGTGGTACGTAGATGACCAAA 57.779 47.619 8.68 0.00 44.66 3.28
389 547 2.919229 CGTGGTACGTAGATGACCAAAC 59.081 50.000 8.68 0.00 44.66 2.93
390 548 3.366679 CGTGGTACGTAGATGACCAAACT 60.367 47.826 8.68 0.00 44.66 2.66
391 549 4.142622 CGTGGTACGTAGATGACCAAACTA 60.143 45.833 8.68 0.00 44.66 2.24
392 550 5.449588 CGTGGTACGTAGATGACCAAACTAT 60.450 44.000 8.68 0.00 44.66 2.12
393 551 6.335777 GTGGTACGTAGATGACCAAACTATT 58.664 40.000 8.68 0.00 44.66 1.73
394 552 7.483307 GTGGTACGTAGATGACCAAACTATTA 58.517 38.462 8.68 0.00 44.66 0.98
395 553 7.975616 GTGGTACGTAGATGACCAAACTATTAA 59.024 37.037 8.68 0.00 44.66 1.40
396 554 8.530311 TGGTACGTAGATGACCAAACTATTAAA 58.470 33.333 4.65 0.00 40.29 1.52
397 555 9.369904 GGTACGTAGATGACCAAACTATTAAAA 57.630 33.333 0.00 0.00 33.16 1.52
400 558 8.814235 ACGTAGATGACCAAACTATTAAAATCG 58.186 33.333 0.00 0.00 0.00 3.34
401 559 9.027129 CGTAGATGACCAAACTATTAAAATCGA 57.973 33.333 0.00 0.00 0.00 3.59
403 561 8.786826 AGATGACCAAACTATTAAAATCGACA 57.213 30.769 0.00 0.00 0.00 4.35
404 562 8.883731 AGATGACCAAACTATTAAAATCGACAG 58.116 33.333 0.00 0.00 0.00 3.51
405 563 8.786826 ATGACCAAACTATTAAAATCGACAGA 57.213 30.769 0.00 0.00 0.00 3.41
406 564 8.610248 TGACCAAACTATTAAAATCGACAGAA 57.390 30.769 0.00 0.00 0.00 3.02
407 565 9.058174 TGACCAAACTATTAAAATCGACAGAAA 57.942 29.630 0.00 0.00 0.00 2.52
408 566 9.887406 GACCAAACTATTAAAATCGACAGAAAA 57.113 29.630 0.00 0.00 0.00 2.29
422 580 8.764524 ATCGACAGAAAATAGACATATAAGCC 57.235 34.615 0.00 0.00 0.00 4.35
423 581 6.861572 TCGACAGAAAATAGACATATAAGCCG 59.138 38.462 0.00 0.00 0.00 5.52
424 582 6.861572 CGACAGAAAATAGACATATAAGCCGA 59.138 38.462 0.00 0.00 0.00 5.54
425 583 7.542477 CGACAGAAAATAGACATATAAGCCGAT 59.458 37.037 0.00 0.00 0.00 4.18
426 584 9.856488 GACAGAAAATAGACATATAAGCCGATA 57.144 33.333 0.00 0.00 0.00 2.92
427 585 9.640963 ACAGAAAATAGACATATAAGCCGATAC 57.359 33.333 0.00 0.00 0.00 2.24
428 586 9.088512 CAGAAAATAGACATATAAGCCGATACC 57.911 37.037 0.00 0.00 0.00 2.73
429 587 8.812972 AGAAAATAGACATATAAGCCGATACCA 58.187 33.333 0.00 0.00 0.00 3.25
430 588 9.431887 GAAAATAGACATATAAGCCGATACCAA 57.568 33.333 0.00 0.00 0.00 3.67
431 589 9.436957 AAAATAGACATATAAGCCGATACCAAG 57.563 33.333 0.00 0.00 0.00 3.61
432 590 4.822026 AGACATATAAGCCGATACCAAGC 58.178 43.478 0.00 0.00 0.00 4.01
433 591 3.585862 ACATATAAGCCGATACCAAGCG 58.414 45.455 0.00 0.00 0.00 4.68
439 597 2.124901 CGATACCAAGCGGGGCAA 60.125 61.111 2.46 0.00 42.91 4.52
440 598 1.525995 CGATACCAAGCGGGGCAAT 60.526 57.895 2.46 0.00 42.91 3.56
441 599 0.250124 CGATACCAAGCGGGGCAATA 60.250 55.000 2.46 0.00 42.91 1.90
442 600 1.812324 CGATACCAAGCGGGGCAATAA 60.812 52.381 2.46 0.00 42.91 1.40
443 601 2.514803 GATACCAAGCGGGGCAATAAT 58.485 47.619 2.46 0.00 42.91 1.28
444 602 3.681593 GATACCAAGCGGGGCAATAATA 58.318 45.455 2.46 0.00 42.91 0.98
445 603 2.445682 ACCAAGCGGGGCAATAATAA 57.554 45.000 2.46 0.00 42.91 1.40
446 604 2.957474 ACCAAGCGGGGCAATAATAAT 58.043 42.857 2.46 0.00 42.91 1.28
447 605 2.627699 ACCAAGCGGGGCAATAATAATG 59.372 45.455 2.46 0.00 42.91 1.90
448 606 2.627699 CCAAGCGGGGCAATAATAATGT 59.372 45.455 0.00 0.00 0.00 2.71
449 607 3.823873 CCAAGCGGGGCAATAATAATGTA 59.176 43.478 0.00 0.00 0.00 2.29
450 608 4.279671 CCAAGCGGGGCAATAATAATGTAA 59.720 41.667 0.00 0.00 0.00 2.41
451 609 5.221342 CCAAGCGGGGCAATAATAATGTAAA 60.221 40.000 0.00 0.00 0.00 2.01
452 610 6.276847 CAAGCGGGGCAATAATAATGTAAAA 58.723 36.000 0.00 0.00 0.00 1.52
453 611 6.472686 AGCGGGGCAATAATAATGTAAAAA 57.527 33.333 0.00 0.00 0.00 1.94
454 612 6.277605 AGCGGGGCAATAATAATGTAAAAAC 58.722 36.000 0.00 0.00 0.00 2.43
455 613 6.043411 GCGGGGCAATAATAATGTAAAAACA 58.957 36.000 0.00 0.00 0.00 2.83
456 614 6.704050 GCGGGGCAATAATAATGTAAAAACAT 59.296 34.615 0.00 0.00 0.00 2.71
457 615 7.307101 GCGGGGCAATAATAATGTAAAAACATG 60.307 37.037 0.00 0.00 0.00 3.21
458 616 7.923344 CGGGGCAATAATAATGTAAAAACATGA 59.077 33.333 0.00 0.00 0.00 3.07
459 617 9.260002 GGGGCAATAATAATGTAAAAACATGAG 57.740 33.333 0.00 0.00 0.00 2.90
460 618 8.764287 GGGCAATAATAATGTAAAAACATGAGC 58.236 33.333 0.00 0.00 0.00 4.26
461 619 9.311916 GGCAATAATAATGTAAAAACATGAGCA 57.688 29.630 0.00 0.00 0.00 4.26
468 626 9.777297 ATAATGTAAAAACATGAGCAAAAAGGT 57.223 25.926 0.00 0.00 0.00 3.50
469 627 7.713764 ATGTAAAAACATGAGCAAAAAGGTC 57.286 32.000 0.00 0.00 44.96 3.85
478 636 4.525912 GAGCAAAAAGGTCATTCATGGT 57.474 40.909 0.00 0.00 44.14 3.55
479 637 4.240096 GAGCAAAAAGGTCATTCATGGTG 58.760 43.478 0.00 0.00 44.14 4.17
480 638 3.896888 AGCAAAAAGGTCATTCATGGTGA 59.103 39.130 0.00 0.00 0.00 4.02
481 639 4.021719 AGCAAAAAGGTCATTCATGGTGAG 60.022 41.667 0.00 0.00 0.00 3.51
482 640 4.240096 CAAAAAGGTCATTCATGGTGAGC 58.760 43.478 17.78 17.78 42.73 4.26
483 641 2.134789 AAGGTCATTCATGGTGAGCC 57.865 50.000 20.24 14.82 43.25 4.70
484 642 0.257039 AGGTCATTCATGGTGAGCCC 59.743 55.000 20.24 11.59 43.25 5.19
485 643 1.097547 GGTCATTCATGGTGAGCCCG 61.098 60.000 15.78 0.00 37.96 6.13
486 644 1.097547 GTCATTCATGGTGAGCCCGG 61.098 60.000 0.00 0.00 35.15 5.73
487 645 1.224315 CATTCATGGTGAGCCCGGA 59.776 57.895 0.73 0.00 35.15 5.14
488 646 0.816825 CATTCATGGTGAGCCCGGAG 60.817 60.000 0.73 0.00 35.15 4.63
489 647 0.982852 ATTCATGGTGAGCCCGGAGA 60.983 55.000 0.73 0.00 35.15 3.71
490 648 0.982852 TTCATGGTGAGCCCGGAGAT 60.983 55.000 0.73 0.00 35.15 2.75
491 649 1.227764 CATGGTGAGCCCGGAGATG 60.228 63.158 0.73 0.00 35.15 2.90
492 650 2.446848 ATGGTGAGCCCGGAGATGG 61.447 63.158 0.73 0.00 35.15 3.51
493 651 3.083997 GGTGAGCCCGGAGATGGT 61.084 66.667 0.73 0.00 0.00 3.55
494 652 2.501610 GTGAGCCCGGAGATGGTC 59.498 66.667 0.73 1.03 0.00 4.02
495 653 2.764128 TGAGCCCGGAGATGGTCC 60.764 66.667 0.73 0.00 42.85 4.46
504 662 2.629336 GGAGATGGTCCAAGGCTAAG 57.371 55.000 0.00 0.00 46.10 2.18
505 663 1.141858 GGAGATGGTCCAAGGCTAAGG 59.858 57.143 0.00 0.00 46.10 2.69
507 665 2.708325 GAGATGGTCCAAGGCTAAGGAT 59.292 50.000 11.27 0.00 36.11 3.24
511 669 3.309296 TGGTCCAAGGCTAAGGATAGAG 58.691 50.000 11.27 0.00 36.11 2.43
557 720 2.903855 CATCACGGCAGCATCCCC 60.904 66.667 0.00 0.00 0.00 4.81
588 763 3.367678 CACGGCATGCATAGTCAGA 57.632 52.632 21.36 0.00 0.00 3.27
590 765 0.536724 ACGGCATGCATAGTCAGACA 59.463 50.000 21.36 0.00 0.00 3.41
618 793 1.092921 TTCACGCCGGCAACATATCC 61.093 55.000 28.98 0.00 0.00 2.59
621 796 2.203153 GCCGGCAACATATCCCGT 60.203 61.111 24.80 0.00 40.38 5.28
646 821 2.270986 CCCAAGGCCAAGTCAGCAC 61.271 63.158 5.01 0.00 0.00 4.40
647 822 2.270986 CCAAGGCCAAGTCAGCACC 61.271 63.158 5.01 0.00 0.00 5.01
648 823 2.281761 AAGGCCAAGTCAGCACCG 60.282 61.111 5.01 0.00 0.00 4.94
652 827 4.680237 CCAAGTCAGCACCGCCGA 62.680 66.667 0.00 0.00 0.00 5.54
653 828 2.434884 CAAGTCAGCACCGCCGAT 60.435 61.111 0.00 0.00 0.00 4.18
655 830 2.650116 AAGTCAGCACCGCCGATCT 61.650 57.895 0.00 0.00 0.00 2.75
656 831 2.125512 GTCAGCACCGCCGATCTT 60.126 61.111 0.00 0.00 0.00 2.40
657 832 1.741770 GTCAGCACCGCCGATCTTT 60.742 57.895 0.00 0.00 0.00 2.52
658 833 1.003839 TCAGCACCGCCGATCTTTT 60.004 52.632 0.00 0.00 0.00 2.27
660 835 1.745489 AGCACCGCCGATCTTTTCC 60.745 57.895 0.00 0.00 0.00 3.13
661 836 2.038269 GCACCGCCGATCTTTTCCA 61.038 57.895 0.00 0.00 0.00 3.53
664 840 0.541863 ACCGCCGATCTTTTCCATCT 59.458 50.000 0.00 0.00 0.00 2.90
673 849 5.295540 CCGATCTTTTCCATCTTCTTCTTCC 59.704 44.000 0.00 0.00 0.00 3.46
736 919 2.369203 GGTGGAGGCTATAAGAAGGGAC 59.631 54.545 0.00 0.00 0.00 4.46
742 925 2.300437 GGCTATAAGAAGGGACGCAGAT 59.700 50.000 0.00 0.00 0.00 2.90
834 1049 0.600255 ACTCAACGCAAAGTCTCCCG 60.600 55.000 0.00 0.00 0.00 5.14
836 1051 1.961277 CAACGCAAAGTCTCCCGCT 60.961 57.895 0.00 0.00 0.00 5.52
856 1071 0.948678 GGTACGTTTGCTTCCTTGCA 59.051 50.000 0.00 0.00 41.65 4.08
922 1146 2.818132 GCCCAGATCTCCTCCACG 59.182 66.667 0.00 0.00 0.00 4.94
927 1151 4.593864 GATCTCCTCCACGCCGCC 62.594 72.222 0.00 0.00 0.00 6.13
986 1254 0.828677 GGCCCCGACTAACATACTGT 59.171 55.000 0.00 0.00 0.00 3.55
987 1255 1.472728 GGCCCCGACTAACATACTGTG 60.473 57.143 0.00 0.00 0.00 3.66
1001 1269 4.218417 ACATACTGTGCACTTCCATTTTCC 59.782 41.667 19.41 0.00 0.00 3.13
1002 1270 1.608590 ACTGTGCACTTCCATTTTCCG 59.391 47.619 19.41 0.00 0.00 4.30
1010 1292 3.012518 ACTTCCATTTTCCGCAGATCAG 58.987 45.455 0.00 0.00 0.00 2.90
1891 2336 5.499313 TCCAACTGATGATGAACTTGCATA 58.501 37.500 0.00 0.00 0.00 3.14
1927 2373 3.196685 GGGATCTCTATGCCACCTACATC 59.803 52.174 0.00 0.00 42.96 3.06
1951 2397 1.691434 GAGGGCCTGAGAAGGTAGATG 59.309 57.143 12.95 0.00 0.00 2.90
1965 2411 4.337145 AGGTAGATGATAGATCCGGTGAC 58.663 47.826 0.00 0.00 0.00 3.67
1985 2431 4.492160 CATGCCGCTTGCTGCAGG 62.492 66.667 17.12 12.54 41.46 4.85
1986 2432 4.728110 ATGCCGCTTGCTGCAGGA 62.728 61.111 17.12 10.66 41.46 3.86
1987 2433 4.728110 TGCCGCTTGCTGCAGGAT 62.728 61.111 17.12 0.00 43.06 3.24
1988 2434 3.885521 GCCGCTTGCTGCAGGATC 61.886 66.667 17.12 6.88 43.06 3.36
1997 2443 0.654683 GCTGCAGGATCGATGTTGAC 59.345 55.000 17.12 0.00 0.00 3.18
2026 2472 1.499056 TCGTGTCGAGAGCGTTACC 59.501 57.895 0.00 0.00 38.98 2.85
2027 2473 0.952497 TCGTGTCGAGAGCGTTACCT 60.952 55.000 0.00 0.00 38.98 3.08
2028 2474 0.723414 CGTGTCGAGAGCGTTACCTA 59.277 55.000 0.00 0.00 38.98 3.08
2029 2475 1.267433 CGTGTCGAGAGCGTTACCTAG 60.267 57.143 0.00 0.00 38.98 3.02
2030 2476 0.731417 TGTCGAGAGCGTTACCTAGC 59.269 55.000 0.00 0.00 38.98 3.42
2039 2485 4.308899 AGCGTTACCTAGCTCATACAAG 57.691 45.455 0.00 0.00 39.98 3.16
2040 2486 3.700038 AGCGTTACCTAGCTCATACAAGT 59.300 43.478 0.00 0.00 39.98 3.16
2041 2487 4.043073 GCGTTACCTAGCTCATACAAGTC 58.957 47.826 0.00 0.00 0.00 3.01
2042 2488 4.439700 GCGTTACCTAGCTCATACAAGTCA 60.440 45.833 0.00 0.00 0.00 3.41
2043 2489 5.736492 GCGTTACCTAGCTCATACAAGTCAT 60.736 44.000 0.00 0.00 0.00 3.06
2044 2490 6.514541 GCGTTACCTAGCTCATACAAGTCATA 60.515 42.308 0.00 0.00 0.00 2.15
2045 2491 7.423199 CGTTACCTAGCTCATACAAGTCATAA 58.577 38.462 0.00 0.00 0.00 1.90
2046 2492 7.919091 CGTTACCTAGCTCATACAAGTCATAAA 59.081 37.037 0.00 0.00 0.00 1.40
2047 2493 9.032420 GTTACCTAGCTCATACAAGTCATAAAC 57.968 37.037 0.00 0.00 0.00 2.01
2048 2494 7.182817 ACCTAGCTCATACAAGTCATAAACA 57.817 36.000 0.00 0.00 0.00 2.83
2049 2495 7.796054 ACCTAGCTCATACAAGTCATAAACAT 58.204 34.615 0.00 0.00 0.00 2.71
2173 2621 4.440663 GCCAGATAAACAGGGCATTCTTTC 60.441 45.833 0.00 0.00 45.70 2.62
2178 2626 0.040204 ACAGGGCATTCTTTCCCCAG 59.960 55.000 0.00 0.00 43.67 4.45
2240 2688 7.027874 TGAGATGTTGGTATACTTTTTCCCT 57.972 36.000 2.25 0.00 0.00 4.20
2241 2689 8.153221 TGAGATGTTGGTATACTTTTTCCCTA 57.847 34.615 2.25 0.00 0.00 3.53
2283 2736 6.202937 TGAATCGTTTATTTTGTCGCAACTT 58.797 32.000 0.00 0.00 0.00 2.66
2300 2753 4.371786 CAACTTGACTGAACTGCTGAGTA 58.628 43.478 0.00 0.00 0.00 2.59
2302 2755 3.243907 ACTTGACTGAACTGCTGAGTACC 60.244 47.826 0.00 0.00 0.00 3.34
2306 2759 1.269723 CTGAACTGCTGAGTACCGTGA 59.730 52.381 0.00 0.00 0.00 4.35
2333 2794 0.813184 CTGCAAATCGCCTCACCAAT 59.187 50.000 0.00 0.00 41.33 3.16
2397 2858 0.603065 GCAGTGGTGTTTCAATCCCC 59.397 55.000 0.00 0.00 0.00 4.81
2406 2867 3.081061 TGTTTCAATCCCCTCATCAACG 58.919 45.455 0.00 0.00 0.00 4.10
2414 2981 2.841266 TCCCCTCATCAACGGTGATAAA 59.159 45.455 17.16 6.58 42.88 1.40
2471 3038 9.294030 GCCTTCATCAACAGTAATTTAAGAATG 57.706 33.333 0.00 0.00 0.00 2.67
2482 3049 9.079833 CAGTAATTTAAGAATGGCACTGAAATG 57.920 33.333 2.16 0.00 35.00 2.32
2556 3125 1.952266 GAAGGACGCGTTGCTAACCG 61.952 60.000 15.53 0.00 0.00 4.44
2558 3127 2.023223 GGACGCGTTGCTAACCGAA 61.023 57.895 15.53 0.00 0.00 4.30
2560 3129 1.280206 GACGCGTTGCTAACCGAACT 61.280 55.000 15.53 0.00 0.00 3.01
2564 3133 2.728846 CGCGTTGCTAACCGAACTAGTA 60.729 50.000 0.00 0.00 0.00 1.82
2596 3168 3.675228 GCTCATTTCACCTTTCATGCAGG 60.675 47.826 8.80 8.80 37.45 4.85
2607 3179 8.469200 TCACCTTTCATGCAGGAAAATAAATAG 58.531 33.333 24.91 12.75 36.42 1.73
2618 3190 9.294614 GCAGGAAAATAAATAGATCATCCTCTT 57.705 33.333 0.00 0.00 33.91 2.85
2622 3194 9.071276 GAAAATAAATAGATCATCCTCTTGCCA 57.929 33.333 0.00 0.00 0.00 4.92
2648 3220 2.032799 TGGTCAGCGAAACAATGTGAAC 59.967 45.455 0.00 0.00 0.00 3.18
2656 3228 5.034152 GCGAAACAATGTGAACTCAAGAAA 58.966 37.500 0.00 0.00 0.00 2.52
2657 3229 5.687285 GCGAAACAATGTGAACTCAAGAAAT 59.313 36.000 0.00 0.00 0.00 2.17
2677 3249 4.563337 ATGATTTCATGCCATCAAGTCG 57.437 40.909 9.83 0.00 34.83 4.18
2680 3252 4.332543 TGATTTCATGCCATCAAGTCGTAC 59.667 41.667 4.60 0.00 0.00 3.67
2684 3256 3.132824 TCATGCCATCAAGTCGTACATCT 59.867 43.478 0.00 0.00 0.00 2.90
2696 3268 4.400884 AGTCGTACATCTTTGCAGATCTCT 59.599 41.667 0.00 0.00 37.71 3.10
2701 3273 4.706035 ACATCTTTGCAGATCTCTGATCC 58.294 43.478 11.34 0.00 46.59 3.36
2703 3275 5.163184 ACATCTTTGCAGATCTCTGATCCAT 60.163 40.000 11.34 0.00 46.59 3.41
2716 3288 1.245732 GATCCATTCATGCCCTGCTC 58.754 55.000 0.00 0.00 0.00 4.26
2740 3322 1.227943 TGCTCTTGACCACAGGTGC 60.228 57.895 0.00 0.00 40.97 5.01
2741 3323 1.227943 GCTCTTGACCACAGGTGCA 60.228 57.895 0.00 0.00 40.53 4.57
2742 3324 1.233285 GCTCTTGACCACAGGTGCAG 61.233 60.000 0.00 0.00 40.53 4.41
2744 3326 1.002888 CTCTTGACCACAGGTGCAGAT 59.997 52.381 0.00 0.00 35.25 2.90
2745 3327 1.162698 CTTGACCACAGGTGCAGATG 58.837 55.000 0.00 0.00 35.25 2.90
2746 3328 0.473755 TTGACCACAGGTGCAGATGT 59.526 50.000 0.00 0.00 35.25 3.06
2747 3329 0.250424 TGACCACAGGTGCAGATGTG 60.250 55.000 19.65 19.65 45.10 3.21
2749 3331 0.250467 ACCACAGGTGCAGATGTGTC 60.250 55.000 22.92 0.00 44.24 3.67
2750 3332 0.957395 CCACAGGTGCAGATGTGTCC 60.957 60.000 22.92 5.01 44.24 4.02
2751 3333 0.957395 CACAGGTGCAGATGTGTCCC 60.957 60.000 18.74 0.77 41.49 4.46
2752 3334 1.130054 ACAGGTGCAGATGTGTCCCT 61.130 55.000 3.00 0.00 0.00 4.20
2754 3336 1.377725 GGTGCAGATGTGTCCCTGG 60.378 63.158 0.00 0.00 0.00 4.45
2755 3337 1.377725 GTGCAGATGTGTCCCTGGG 60.378 63.158 6.33 6.33 0.00 4.45
2756 3338 1.847506 TGCAGATGTGTCCCTGGGT 60.848 57.895 13.56 0.00 0.00 4.51
2758 3340 0.839946 GCAGATGTGTCCCTGGGTAT 59.160 55.000 13.56 3.54 0.00 2.73
2759 3341 1.202698 GCAGATGTGTCCCTGGGTATC 60.203 57.143 13.56 12.18 0.00 2.24
2796 3390 2.288640 TGCTATCAGTGGCTCATCATCG 60.289 50.000 0.00 0.00 32.28 3.84
2797 3391 2.288702 GCTATCAGTGGCTCATCATCGT 60.289 50.000 0.00 0.00 0.00 3.73
2798 3392 2.522836 ATCAGTGGCTCATCATCGTC 57.477 50.000 0.00 0.00 0.00 4.20
2799 3393 0.101219 TCAGTGGCTCATCATCGTCG 59.899 55.000 0.00 0.00 0.00 5.12
2800 3394 1.227089 AGTGGCTCATCATCGTCGC 60.227 57.895 0.00 0.00 0.00 5.19
2801 3395 1.227089 GTGGCTCATCATCGTCGCT 60.227 57.895 0.00 0.00 0.00 4.93
2802 3396 0.030773 GTGGCTCATCATCGTCGCTA 59.969 55.000 0.00 0.00 0.00 4.26
2803 3397 0.961753 TGGCTCATCATCGTCGCTAT 59.038 50.000 0.00 0.00 0.00 2.97
2804 3398 1.068264 TGGCTCATCATCGTCGCTATC 60.068 52.381 0.00 0.00 0.00 2.08
2805 3399 1.201181 GGCTCATCATCGTCGCTATCT 59.799 52.381 0.00 0.00 0.00 1.98
2806 3400 2.352225 GGCTCATCATCGTCGCTATCTT 60.352 50.000 0.00 0.00 0.00 2.40
2807 3401 2.914214 GCTCATCATCGTCGCTATCTTC 59.086 50.000 0.00 0.00 0.00 2.87
2808 3402 3.610349 GCTCATCATCGTCGCTATCTTCA 60.610 47.826 0.00 0.00 0.00 3.02
2809 3403 4.731720 CTCATCATCGTCGCTATCTTCAT 58.268 43.478 0.00 0.00 0.00 2.57
2810 3404 4.727475 TCATCATCGTCGCTATCTTCATC 58.273 43.478 0.00 0.00 0.00 2.92
2811 3405 4.216257 TCATCATCGTCGCTATCTTCATCA 59.784 41.667 0.00 0.00 0.00 3.07
2812 3406 4.773323 TCATCGTCGCTATCTTCATCAT 57.227 40.909 0.00 0.00 0.00 2.45
2813 3407 4.727475 TCATCGTCGCTATCTTCATCATC 58.273 43.478 0.00 0.00 0.00 2.92
2822 3416 7.062138 GTCGCTATCTTCATCATCATCTCTTTC 59.938 40.741 0.00 0.00 0.00 2.62
2823 3417 6.867293 CGCTATCTTCATCATCATCTCTTTCA 59.133 38.462 0.00 0.00 0.00 2.69
2831 3425 7.793036 TCATCATCATCTCTTTCATCTTCTGT 58.207 34.615 0.00 0.00 0.00 3.41
2844 3438 4.516698 TCATCTTCTGTGATGATCGATCGA 59.483 41.667 21.86 21.86 45.29 3.59
2846 3440 3.879892 TCTTCTGTGATGATCGATCGACT 59.120 43.478 22.06 9.86 33.17 4.18
2847 3441 3.615849 TCTGTGATGATCGATCGACTG 57.384 47.619 22.06 17.79 33.17 3.51
2848 3442 2.945668 TCTGTGATGATCGATCGACTGT 59.054 45.455 22.06 8.87 33.17 3.55
2849 3443 3.002759 TCTGTGATGATCGATCGACTGTC 59.997 47.826 22.06 17.58 33.17 3.51
2850 3444 2.682856 TGTGATGATCGATCGACTGTCA 59.317 45.455 22.06 20.30 33.17 3.58
2851 3445 3.128589 TGTGATGATCGATCGACTGTCAA 59.871 43.478 22.06 11.55 33.17 3.18
2852 3446 4.105486 GTGATGATCGATCGACTGTCAAA 58.895 43.478 22.06 10.38 33.17 2.69
2853 3447 4.027295 GTGATGATCGATCGACTGTCAAAC 60.027 45.833 22.06 17.43 33.17 2.93
2854 3448 3.569250 TGATCGATCGACTGTCAAACA 57.431 42.857 22.06 7.79 0.00 2.83
2855 3449 3.908213 TGATCGATCGACTGTCAAACAA 58.092 40.909 22.06 0.00 0.00 2.83
2856 3450 3.673338 TGATCGATCGACTGTCAAACAAC 59.327 43.478 22.06 0.00 0.00 3.32
2857 3451 2.400399 TCGATCGACTGTCAAACAACC 58.600 47.619 15.15 0.00 0.00 3.77
2858 3452 1.124297 CGATCGACTGTCAAACAACCG 59.876 52.381 10.26 0.00 0.00 4.44
2859 3453 2.400399 GATCGACTGTCAAACAACCGA 58.600 47.619 8.73 0.00 36.78 4.69
2860 3454 2.519377 TCGACTGTCAAACAACCGAT 57.481 45.000 8.73 0.00 30.76 4.18
2864 3458 3.423123 CGACTGTCAAACAACCGATAAGC 60.423 47.826 8.73 0.00 0.00 3.09
2870 3464 3.438781 TCAAACAACCGATAAGCATCACC 59.561 43.478 0.00 0.00 0.00 4.02
2889 3483 7.201758 GCATCACCACATATTTCATCTCTTTCA 60.202 37.037 0.00 0.00 0.00 2.69
2983 3616 9.440773 TCCATTTGTCAGATATATGATGTTAGC 57.559 33.333 2.87 0.00 0.00 3.09
3117 3750 9.485206 GCAAAGATGATTCCAAAGCATAATAAT 57.515 29.630 0.00 0.00 37.69 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.953471 TGCATGCGAACCACTACCAC 60.953 55.000 14.09 0.00 0.00 4.16
2 3 0.378257 CATGCATGCGAACCACTACC 59.622 55.000 14.93 0.00 0.00 3.18
3 4 1.086696 ACATGCATGCGAACCACTAC 58.913 50.000 26.53 0.00 0.00 2.73
4 5 2.682155 TACATGCATGCGAACCACTA 57.318 45.000 26.53 5.96 0.00 2.74
62 71 3.067846 GCGCTTTCGTCGTGCCTAC 62.068 63.158 0.00 0.00 38.14 3.18
63 72 2.807895 GCGCTTTCGTCGTGCCTA 60.808 61.111 0.00 0.00 38.14 3.93
142 157 7.401080 GTGTTGAATCAACCAAATCAAACTTG 58.599 34.615 21.75 0.00 42.96 3.16
153 168 1.134068 TGGTCCGTGTTGAATCAACCA 60.134 47.619 21.75 10.55 42.96 3.67
154 169 1.600023 TGGTCCGTGTTGAATCAACC 58.400 50.000 21.75 12.70 42.96 3.77
155 170 2.668279 GCATGGTCCGTGTTGAATCAAC 60.668 50.000 18.42 18.42 43.78 3.18
156 171 1.539388 GCATGGTCCGTGTTGAATCAA 59.461 47.619 12.77 0.00 0.00 2.57
162 177 0.884259 TGTCAGCATGGTCCGTGTTG 60.884 55.000 19.18 19.18 36.16 3.33
173 188 6.203145 CACGTATCTACTAGTACTGTCAGCAT 59.797 42.308 5.39 0.00 0.00 3.79
191 206 7.152290 TGTAATGTTAATGTACGCACGTATC 57.848 36.000 6.15 1.65 32.82 2.24
192 207 7.522901 TTGTAATGTTAATGTACGCACGTAT 57.477 32.000 6.15 0.00 32.82 3.06
193 208 6.941218 TTGTAATGTTAATGTACGCACGTA 57.059 33.333 0.00 0.00 0.00 3.57
194 209 5.842619 TTGTAATGTTAATGTACGCACGT 57.157 34.783 0.00 0.00 0.00 4.49
195 210 6.527089 TCTTTGTAATGTTAATGTACGCACG 58.473 36.000 0.00 0.00 0.00 5.34
196 211 8.785101 CATTCTTTGTAATGTTAATGTACGCAC 58.215 33.333 0.00 0.00 33.11 5.34
197 212 8.508062 ACATTCTTTGTAATGTTAATGTACGCA 58.492 29.630 0.00 0.00 45.54 5.24
198 213 8.785101 CACATTCTTTGTAATGTTAATGTACGC 58.215 33.333 0.00 0.00 45.54 4.42
214 372 9.994432 GGATTTCTGTATTACTCACATTCTTTG 57.006 33.333 0.00 0.00 0.00 2.77
218 376 8.398665 GGTTGGATTTCTGTATTACTCACATTC 58.601 37.037 0.00 0.00 0.00 2.67
227 385 6.395780 TTGAGGGGTTGGATTTCTGTATTA 57.604 37.500 0.00 0.00 0.00 0.98
229 387 4.946160 TTGAGGGGTTGGATTTCTGTAT 57.054 40.909 0.00 0.00 0.00 2.29
231 389 3.230976 GTTTGAGGGGTTGGATTTCTGT 58.769 45.455 0.00 0.00 0.00 3.41
232 390 3.005791 GTGTTTGAGGGGTTGGATTTCTG 59.994 47.826 0.00 0.00 0.00 3.02
234 392 2.299013 GGTGTTTGAGGGGTTGGATTTC 59.701 50.000 0.00 0.00 0.00 2.17
236 394 1.503347 AGGTGTTTGAGGGGTTGGATT 59.497 47.619 0.00 0.00 0.00 3.01
238 396 0.184933 CAGGTGTTTGAGGGGTTGGA 59.815 55.000 0.00 0.00 0.00 3.53
239 397 1.463553 GCAGGTGTTTGAGGGGTTGG 61.464 60.000 0.00 0.00 0.00 3.77
240 398 1.795170 CGCAGGTGTTTGAGGGGTTG 61.795 60.000 0.00 0.00 0.00 3.77
241 399 1.528309 CGCAGGTGTTTGAGGGGTT 60.528 57.895 0.00 0.00 0.00 4.11
242 400 2.113139 CGCAGGTGTTTGAGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
275 433 3.916392 CTGGTCAGTGTCCGCCGAC 62.916 68.421 1.86 0.00 39.66 4.79
276 434 3.680786 CTGGTCAGTGTCCGCCGA 61.681 66.667 1.86 0.00 0.00 5.54
277 435 4.742201 CCTGGTCAGTGTCCGCCG 62.742 72.222 1.86 0.00 0.00 6.46
279 437 4.314440 TGCCTGGTCAGTGTCCGC 62.314 66.667 1.86 1.13 0.00 5.54
281 439 0.603975 GAAGTGCCTGGTCAGTGTCC 60.604 60.000 0.00 0.00 0.00 4.02
282 440 0.603975 GGAAGTGCCTGGTCAGTGTC 60.604 60.000 0.00 0.00 0.00 3.67
283 441 1.451936 GGAAGTGCCTGGTCAGTGT 59.548 57.895 0.00 0.00 0.00 3.55
284 442 4.386413 GGAAGTGCCTGGTCAGTG 57.614 61.111 0.00 0.00 0.00 3.66
295 453 2.280628 GAGGCACGGATTTAGGAAGTG 58.719 52.381 0.00 0.00 36.05 3.16
296 454 1.209747 GGAGGCACGGATTTAGGAAGT 59.790 52.381 0.00 0.00 0.00 3.01
297 455 1.209504 TGGAGGCACGGATTTAGGAAG 59.790 52.381 0.00 0.00 0.00 3.46
298 456 1.065709 GTGGAGGCACGGATTTAGGAA 60.066 52.381 0.00 0.00 0.00 3.36
299 457 0.539986 GTGGAGGCACGGATTTAGGA 59.460 55.000 0.00 0.00 0.00 2.94
300 458 0.251916 TGTGGAGGCACGGATTTAGG 59.748 55.000 0.00 0.00 0.00 2.69
301 459 1.369625 GTGTGGAGGCACGGATTTAG 58.630 55.000 0.00 0.00 0.00 1.85
302 460 0.035820 GGTGTGGAGGCACGGATTTA 60.036 55.000 0.00 0.00 40.08 1.40
303 461 1.303317 GGTGTGGAGGCACGGATTT 60.303 57.895 0.00 0.00 40.08 2.17
304 462 2.351276 GGTGTGGAGGCACGGATT 59.649 61.111 0.00 0.00 40.08 3.01
305 463 3.717294 GGGTGTGGAGGCACGGAT 61.717 66.667 0.00 0.00 40.08 4.18
313 471 1.065928 GAGATACGCGGGTGTGGAG 59.934 63.158 16.34 0.00 0.00 3.86
314 472 1.040893 ATGAGATACGCGGGTGTGGA 61.041 55.000 16.34 0.00 0.00 4.02
315 473 0.671796 TATGAGATACGCGGGTGTGG 59.328 55.000 16.34 0.00 0.00 4.17
316 474 1.930817 GCTATGAGATACGCGGGTGTG 60.931 57.143 16.34 0.00 0.00 3.82
317 475 0.314302 GCTATGAGATACGCGGGTGT 59.686 55.000 16.34 8.80 0.00 4.16
318 476 0.598562 AGCTATGAGATACGCGGGTG 59.401 55.000 16.34 0.00 0.00 4.61
319 477 0.598562 CAGCTATGAGATACGCGGGT 59.401 55.000 12.47 10.91 0.00 5.28
320 478 0.109086 CCAGCTATGAGATACGCGGG 60.109 60.000 12.47 0.00 0.00 6.13
321 479 0.734253 GCCAGCTATGAGATACGCGG 60.734 60.000 12.47 0.00 0.00 6.46
322 480 0.039165 TGCCAGCTATGAGATACGCG 60.039 55.000 3.53 3.53 0.00 6.01
323 481 1.423395 GTGCCAGCTATGAGATACGC 58.577 55.000 0.00 0.00 0.00 4.42
324 482 1.341209 TGGTGCCAGCTATGAGATACG 59.659 52.381 0.00 0.00 0.00 3.06
325 483 3.692257 ATGGTGCCAGCTATGAGATAC 57.308 47.619 0.00 0.00 0.00 2.24
326 484 4.779489 ACATATGGTGCCAGCTATGAGATA 59.221 41.667 15.06 0.00 0.00 1.98
327 485 3.586174 ACATATGGTGCCAGCTATGAGAT 59.414 43.478 15.06 0.00 0.00 2.75
328 486 2.974794 ACATATGGTGCCAGCTATGAGA 59.025 45.455 15.06 0.00 0.00 3.27
329 487 3.332919 GACATATGGTGCCAGCTATGAG 58.667 50.000 15.06 0.00 0.00 2.90
330 488 2.038952 GGACATATGGTGCCAGCTATGA 59.961 50.000 15.06 0.00 0.00 2.15
331 489 2.224597 TGGACATATGGTGCCAGCTATG 60.225 50.000 7.80 9.21 36.96 2.23
332 490 2.057140 TGGACATATGGTGCCAGCTAT 58.943 47.619 7.80 0.00 36.96 2.97
333 491 1.506025 TGGACATATGGTGCCAGCTA 58.494 50.000 7.80 0.00 36.96 3.32
334 492 0.848735 ATGGACATATGGTGCCAGCT 59.151 50.000 16.12 2.50 37.41 4.24
335 493 2.566833 TATGGACATATGGTGCCAGC 57.433 50.000 16.12 0.00 37.41 4.85
336 494 4.290711 TCATATGGACATATGGTGCCAG 57.709 45.455 24.41 5.28 46.56 4.85
337 495 4.720775 TTCATATGGACATATGGTGCCA 57.279 40.909 24.41 14.15 46.56 4.92
338 496 5.711506 TGAATTCATATGGACATATGGTGCC 59.288 40.000 24.41 15.29 46.56 5.01
339 497 6.822667 TGAATTCATATGGACATATGGTGC 57.177 37.500 24.41 15.93 46.56 5.01
340 498 7.094118 TGCATGAATTCATATGGACATATGGTG 60.094 37.037 24.41 16.43 46.56 4.17
341 499 6.949463 TGCATGAATTCATATGGACATATGGT 59.051 34.615 24.41 14.86 46.56 3.55
342 500 7.399245 TGCATGAATTCATATGGACATATGG 57.601 36.000 24.41 12.51 46.56 2.74
344 502 7.175467 ACGTTGCATGAATTCATATGGACATAT 59.825 33.333 20.32 0.00 34.26 1.78
345 503 6.486320 ACGTTGCATGAATTCATATGGACATA 59.514 34.615 20.32 0.00 34.26 2.29
346 504 5.300034 ACGTTGCATGAATTCATATGGACAT 59.700 36.000 20.32 3.83 34.26 3.06
347 505 4.639755 ACGTTGCATGAATTCATATGGACA 59.360 37.500 20.32 10.91 34.26 4.02
348 506 4.971830 CACGTTGCATGAATTCATATGGAC 59.028 41.667 20.32 14.52 34.26 4.02
349 507 4.036616 CCACGTTGCATGAATTCATATGGA 59.963 41.667 20.32 9.75 34.26 3.41
350 508 4.202040 ACCACGTTGCATGAATTCATATGG 60.202 41.667 20.32 19.66 34.26 2.74
351 509 4.923893 ACCACGTTGCATGAATTCATATG 58.076 39.130 20.32 12.21 34.26 1.78
352 510 5.277297 CGTACCACGTTGCATGAATTCATAT 60.277 40.000 20.32 0.00 36.74 1.78
353 511 4.033472 CGTACCACGTTGCATGAATTCATA 59.967 41.667 20.32 3.66 36.74 2.15
354 512 3.181511 CGTACCACGTTGCATGAATTCAT 60.182 43.478 15.36 15.36 36.74 2.57
355 513 2.158645 CGTACCACGTTGCATGAATTCA 59.841 45.455 11.26 11.26 36.74 2.57
356 514 2.769376 CGTACCACGTTGCATGAATTC 58.231 47.619 0.00 0.00 36.74 2.17
357 515 2.892373 CGTACCACGTTGCATGAATT 57.108 45.000 0.00 0.00 36.74 2.17
369 527 4.184079 AGTTTGGTCATCTACGTACCAC 57.816 45.455 6.64 0.00 42.84 4.16
370 528 6.534475 AATAGTTTGGTCATCTACGTACCA 57.466 37.500 2.96 2.96 41.47 3.25
371 529 8.931385 TTTAATAGTTTGGTCATCTACGTACC 57.069 34.615 0.00 0.00 0.00 3.34
374 532 8.814235 CGATTTTAATAGTTTGGTCATCTACGT 58.186 33.333 0.00 0.00 0.00 3.57
375 533 9.027129 TCGATTTTAATAGTTTGGTCATCTACG 57.973 33.333 0.00 0.00 0.00 3.51
377 535 9.878667 TGTCGATTTTAATAGTTTGGTCATCTA 57.121 29.630 0.00 0.00 0.00 1.98
378 536 8.786826 TGTCGATTTTAATAGTTTGGTCATCT 57.213 30.769 0.00 0.00 0.00 2.90
379 537 8.879759 TCTGTCGATTTTAATAGTTTGGTCATC 58.120 33.333 0.00 0.00 0.00 2.92
380 538 8.786826 TCTGTCGATTTTAATAGTTTGGTCAT 57.213 30.769 0.00 0.00 0.00 3.06
381 539 8.610248 TTCTGTCGATTTTAATAGTTTGGTCA 57.390 30.769 0.00 0.00 0.00 4.02
382 540 9.887406 TTTTCTGTCGATTTTAATAGTTTGGTC 57.113 29.630 0.00 0.00 0.00 4.02
396 554 9.209175 GGCTTATATGTCTATTTTCTGTCGATT 57.791 33.333 0.00 0.00 0.00 3.34
397 555 7.542477 CGGCTTATATGTCTATTTTCTGTCGAT 59.458 37.037 0.00 0.00 0.00 3.59
398 556 6.861572 CGGCTTATATGTCTATTTTCTGTCGA 59.138 38.462 0.00 0.00 0.00 4.20
399 557 6.861572 TCGGCTTATATGTCTATTTTCTGTCG 59.138 38.462 0.00 0.00 0.00 4.35
400 558 8.764524 ATCGGCTTATATGTCTATTTTCTGTC 57.235 34.615 0.00 0.00 0.00 3.51
401 559 9.640963 GTATCGGCTTATATGTCTATTTTCTGT 57.359 33.333 0.00 0.00 0.00 3.41
402 560 9.088512 GGTATCGGCTTATATGTCTATTTTCTG 57.911 37.037 0.00 0.00 0.00 3.02
403 561 8.812972 TGGTATCGGCTTATATGTCTATTTTCT 58.187 33.333 0.00 0.00 0.00 2.52
404 562 8.997621 TGGTATCGGCTTATATGTCTATTTTC 57.002 34.615 0.00 0.00 0.00 2.29
405 563 9.436957 CTTGGTATCGGCTTATATGTCTATTTT 57.563 33.333 0.00 0.00 0.00 1.82
406 564 7.549488 GCTTGGTATCGGCTTATATGTCTATTT 59.451 37.037 0.00 0.00 0.00 1.40
407 565 7.042335 GCTTGGTATCGGCTTATATGTCTATT 58.958 38.462 0.00 0.00 0.00 1.73
408 566 6.574350 GCTTGGTATCGGCTTATATGTCTAT 58.426 40.000 0.00 0.00 0.00 1.98
409 567 5.392703 CGCTTGGTATCGGCTTATATGTCTA 60.393 44.000 0.00 0.00 0.00 2.59
410 568 4.618460 CGCTTGGTATCGGCTTATATGTCT 60.618 45.833 0.00 0.00 0.00 3.41
411 569 3.612860 CGCTTGGTATCGGCTTATATGTC 59.387 47.826 0.00 0.00 0.00 3.06
412 570 3.585862 CGCTTGGTATCGGCTTATATGT 58.414 45.455 0.00 0.00 0.00 2.29
413 571 2.930040 CCGCTTGGTATCGGCTTATATG 59.070 50.000 0.00 0.00 39.14 1.78
414 572 2.093658 CCCGCTTGGTATCGGCTTATAT 60.094 50.000 0.00 0.00 44.01 0.86
415 573 1.274167 CCCGCTTGGTATCGGCTTATA 59.726 52.381 0.00 0.00 44.01 0.98
416 574 0.034896 CCCGCTTGGTATCGGCTTAT 59.965 55.000 0.00 0.00 44.01 1.73
417 575 1.444250 CCCGCTTGGTATCGGCTTA 59.556 57.895 0.00 0.00 44.01 3.09
418 576 2.189521 CCCGCTTGGTATCGGCTT 59.810 61.111 0.00 0.00 44.01 4.35
419 577 3.861797 CCCCGCTTGGTATCGGCT 61.862 66.667 0.00 0.00 44.01 5.52
421 579 2.958578 ATTGCCCCGCTTGGTATCGG 62.959 60.000 0.00 0.00 44.89 4.18
422 580 0.250124 TATTGCCCCGCTTGGTATCG 60.250 55.000 0.00 0.00 0.00 2.92
423 581 1.975660 TTATTGCCCCGCTTGGTATC 58.024 50.000 0.00 0.00 0.00 2.24
424 582 2.675658 ATTATTGCCCCGCTTGGTAT 57.324 45.000 0.00 0.00 0.00 2.73
425 583 3.579534 TTATTATTGCCCCGCTTGGTA 57.420 42.857 0.00 0.00 0.00 3.25
426 584 2.445682 TTATTATTGCCCCGCTTGGT 57.554 45.000 0.00 0.00 0.00 3.67
427 585 2.627699 ACATTATTATTGCCCCGCTTGG 59.372 45.455 0.00 0.00 0.00 3.61
428 586 5.446143 TTACATTATTATTGCCCCGCTTG 57.554 39.130 0.00 0.00 0.00 4.01
429 587 6.472686 TTTTACATTATTATTGCCCCGCTT 57.527 33.333 0.00 0.00 0.00 4.68
430 588 6.127310 TGTTTTTACATTATTATTGCCCCGCT 60.127 34.615 0.00 0.00 0.00 5.52
431 589 6.043411 TGTTTTTACATTATTATTGCCCCGC 58.957 36.000 0.00 0.00 0.00 6.13
432 590 7.923344 TCATGTTTTTACATTATTATTGCCCCG 59.077 33.333 0.00 0.00 0.00 5.73
433 591 9.260002 CTCATGTTTTTACATTATTATTGCCCC 57.740 33.333 0.00 0.00 0.00 5.80
434 592 8.764287 GCTCATGTTTTTACATTATTATTGCCC 58.236 33.333 0.00 0.00 0.00 5.36
435 593 9.311916 TGCTCATGTTTTTACATTATTATTGCC 57.688 29.630 0.00 0.00 0.00 4.52
442 600 9.777297 ACCTTTTTGCTCATGTTTTTACATTAT 57.223 25.926 0.00 0.00 0.00 1.28
443 601 9.255304 GACCTTTTTGCTCATGTTTTTACATTA 57.745 29.630 0.00 0.00 0.00 1.90
444 602 7.768120 TGACCTTTTTGCTCATGTTTTTACATT 59.232 29.630 0.00 0.00 0.00 2.71
445 603 7.271511 TGACCTTTTTGCTCATGTTTTTACAT 58.728 30.769 0.00 0.00 0.00 2.29
446 604 6.634805 TGACCTTTTTGCTCATGTTTTTACA 58.365 32.000 0.00 0.00 0.00 2.41
447 605 7.713764 ATGACCTTTTTGCTCATGTTTTTAC 57.286 32.000 0.00 0.00 0.00 2.01
448 606 7.984050 TGAATGACCTTTTTGCTCATGTTTTTA 59.016 29.630 0.00 0.00 0.00 1.52
449 607 6.822676 TGAATGACCTTTTTGCTCATGTTTTT 59.177 30.769 0.00 0.00 0.00 1.94
450 608 6.347696 TGAATGACCTTTTTGCTCATGTTTT 58.652 32.000 0.00 0.00 0.00 2.43
451 609 5.916318 TGAATGACCTTTTTGCTCATGTTT 58.084 33.333 0.00 0.00 0.00 2.83
452 610 5.534207 TGAATGACCTTTTTGCTCATGTT 57.466 34.783 0.00 0.00 0.00 2.71
453 611 5.475719 CATGAATGACCTTTTTGCTCATGT 58.524 37.500 0.00 0.00 35.87 3.21
454 612 4.868171 CCATGAATGACCTTTTTGCTCATG 59.132 41.667 0.00 0.00 38.80 3.07
455 613 4.529377 ACCATGAATGACCTTTTTGCTCAT 59.471 37.500 0.00 0.00 0.00 2.90
456 614 3.896888 ACCATGAATGACCTTTTTGCTCA 59.103 39.130 0.00 0.00 0.00 4.26
457 615 4.022068 TCACCATGAATGACCTTTTTGCTC 60.022 41.667 0.00 0.00 0.00 4.26
458 616 3.896888 TCACCATGAATGACCTTTTTGCT 59.103 39.130 0.00 0.00 0.00 3.91
459 617 4.240096 CTCACCATGAATGACCTTTTTGC 58.760 43.478 0.00 0.00 0.00 3.68
460 618 4.240096 GCTCACCATGAATGACCTTTTTG 58.760 43.478 0.00 0.00 0.00 2.44
461 619 3.259123 GGCTCACCATGAATGACCTTTTT 59.741 43.478 0.00 0.00 35.26 1.94
462 620 2.827921 GGCTCACCATGAATGACCTTTT 59.172 45.455 0.00 0.00 35.26 2.27
463 621 2.450476 GGCTCACCATGAATGACCTTT 58.550 47.619 0.00 0.00 35.26 3.11
464 622 1.341383 GGGCTCACCATGAATGACCTT 60.341 52.381 0.00 0.00 39.85 3.50
465 623 0.257039 GGGCTCACCATGAATGACCT 59.743 55.000 0.00 0.00 39.85 3.85
466 624 1.097547 CGGGCTCACCATGAATGACC 61.098 60.000 0.00 2.69 40.22 4.02
467 625 1.097547 CCGGGCTCACCATGAATGAC 61.098 60.000 0.00 0.00 40.22 3.06
468 626 1.224315 CCGGGCTCACCATGAATGA 59.776 57.895 0.00 0.00 40.22 2.57
469 627 0.816825 CTCCGGGCTCACCATGAATG 60.817 60.000 0.00 0.00 40.22 2.67
470 628 0.982852 TCTCCGGGCTCACCATGAAT 60.983 55.000 0.00 0.00 40.22 2.57
471 629 0.982852 ATCTCCGGGCTCACCATGAA 60.983 55.000 0.00 0.00 40.22 2.57
472 630 1.383109 ATCTCCGGGCTCACCATGA 60.383 57.895 0.00 0.00 40.22 3.07
473 631 1.227764 CATCTCCGGGCTCACCATG 60.228 63.158 0.00 0.00 40.22 3.66
474 632 2.446848 CCATCTCCGGGCTCACCAT 61.447 63.158 0.00 0.00 40.22 3.55
475 633 3.083349 CCATCTCCGGGCTCACCA 61.083 66.667 0.00 0.00 40.22 4.17
476 634 3.083997 ACCATCTCCGGGCTCACC 61.084 66.667 0.00 0.00 0.00 4.02
477 635 2.501610 GACCATCTCCGGGCTCAC 59.498 66.667 0.00 0.00 0.00 3.51
478 636 2.764128 GGACCATCTCCGGGCTCA 60.764 66.667 0.00 0.00 32.93 4.26
479 637 2.317149 CTTGGACCATCTCCGGGCTC 62.317 65.000 0.00 0.00 43.03 4.70
480 638 2.285368 TTGGACCATCTCCGGGCT 60.285 61.111 0.00 0.00 43.03 5.19
481 639 2.190578 CTTGGACCATCTCCGGGC 59.809 66.667 0.00 0.00 43.03 6.13
482 640 2.911143 CCTTGGACCATCTCCGGG 59.089 66.667 0.00 0.00 43.03 5.73
483 641 1.048724 TAGCCTTGGACCATCTCCGG 61.049 60.000 0.00 0.00 43.03 5.14
484 642 0.830648 TTAGCCTTGGACCATCTCCG 59.169 55.000 0.00 0.00 43.03 4.63
485 643 1.141858 CCTTAGCCTTGGACCATCTCC 59.858 57.143 0.00 0.00 39.97 3.71
486 644 2.119495 TCCTTAGCCTTGGACCATCTC 58.881 52.381 0.00 0.00 0.00 2.75
487 645 2.270434 TCCTTAGCCTTGGACCATCT 57.730 50.000 0.00 0.00 0.00 2.90
488 646 3.904339 TCTATCCTTAGCCTTGGACCATC 59.096 47.826 0.00 0.00 34.90 3.51
489 647 3.906846 CTCTATCCTTAGCCTTGGACCAT 59.093 47.826 0.00 0.00 34.90 3.55
490 648 3.309296 CTCTATCCTTAGCCTTGGACCA 58.691 50.000 0.00 0.00 34.90 4.02
491 649 2.635427 CCTCTATCCTTAGCCTTGGACC 59.365 54.545 0.00 0.00 34.90 4.46
492 650 2.037902 GCCTCTATCCTTAGCCTTGGAC 59.962 54.545 0.00 0.00 34.90 4.02
493 651 2.330216 GCCTCTATCCTTAGCCTTGGA 58.670 52.381 0.00 0.00 36.72 3.53
494 652 1.001406 CGCCTCTATCCTTAGCCTTGG 59.999 57.143 0.00 0.00 0.00 3.61
495 653 1.689273 ACGCCTCTATCCTTAGCCTTG 59.311 52.381 0.00 0.00 0.00 3.61
497 655 1.333177 CACGCCTCTATCCTTAGCCT 58.667 55.000 0.00 0.00 0.00 4.58
500 658 2.032620 ACCACACGCCTCTATCCTTAG 58.967 52.381 0.00 0.00 0.00 2.18
504 662 1.144057 CCACCACACGCCTCTATCC 59.856 63.158 0.00 0.00 0.00 2.59
505 663 1.521681 GCCACCACACGCCTCTATC 60.522 63.158 0.00 0.00 0.00 2.08
507 665 4.063967 CGCCACCACACGCCTCTA 62.064 66.667 0.00 0.00 0.00 2.43
574 749 5.496133 AAAATCTGTCTGACTATGCATGC 57.504 39.130 11.82 11.82 0.00 4.06
578 753 7.848051 CGTGAATTAAAATCTGTCTGACTATGC 59.152 37.037 9.51 0.00 0.00 3.14
582 757 5.122396 GGCGTGAATTAAAATCTGTCTGACT 59.878 40.000 9.51 0.00 0.00 3.41
588 763 2.159435 GCCGGCGTGAATTAAAATCTGT 60.159 45.455 12.58 0.00 0.00 3.41
590 765 2.088423 TGCCGGCGTGAATTAAAATCT 58.912 42.857 23.90 0.00 0.00 2.40
618 793 1.378119 GGCCTTGGGTTTCCTACGG 60.378 63.158 0.00 0.00 0.00 4.02
621 796 1.074889 GACTTGGCCTTGGGTTTCCTA 59.925 52.381 3.32 0.00 0.00 2.94
628 803 2.115910 TGCTGACTTGGCCTTGGG 59.884 61.111 3.32 0.00 0.00 4.12
629 804 2.270986 GGTGCTGACTTGGCCTTGG 61.271 63.158 3.32 0.00 0.00 3.61
630 805 2.620112 CGGTGCTGACTTGGCCTTG 61.620 63.158 3.32 0.00 0.00 3.61
631 806 2.281761 CGGTGCTGACTTGGCCTT 60.282 61.111 3.32 0.00 0.00 4.35
646 821 1.599542 GAAGATGGAAAAGATCGGCGG 59.400 52.381 7.21 0.00 0.00 6.13
647 822 2.555199 AGAAGATGGAAAAGATCGGCG 58.445 47.619 0.00 0.00 0.00 6.46
648 823 4.195416 AGAAGAAGATGGAAAAGATCGGC 58.805 43.478 0.00 0.00 0.00 5.54
650 825 6.112058 AGGAAGAAGAAGATGGAAAAGATCG 58.888 40.000 0.00 0.00 0.00 3.69
652 827 6.217280 AGGAGGAAGAAGAAGATGGAAAAGAT 59.783 38.462 0.00 0.00 0.00 2.40
653 828 5.549619 AGGAGGAAGAAGAAGATGGAAAAGA 59.450 40.000 0.00 0.00 0.00 2.52
655 830 5.280727 GGAGGAGGAAGAAGAAGATGGAAAA 60.281 44.000 0.00 0.00 0.00 2.29
656 831 4.226168 GGAGGAGGAAGAAGAAGATGGAAA 59.774 45.833 0.00 0.00 0.00 3.13
657 832 3.777522 GGAGGAGGAAGAAGAAGATGGAA 59.222 47.826 0.00 0.00 0.00 3.53
658 833 3.013417 AGGAGGAGGAAGAAGAAGATGGA 59.987 47.826 0.00 0.00 0.00 3.41
660 835 4.099881 CAGAGGAGGAGGAAGAAGAAGATG 59.900 50.000 0.00 0.00 0.00 2.90
661 836 4.289245 CAGAGGAGGAGGAAGAAGAAGAT 58.711 47.826 0.00 0.00 0.00 2.40
664 840 2.183679 GCAGAGGAGGAGGAAGAAGAA 58.816 52.381 0.00 0.00 0.00 2.52
673 849 2.445654 GGGAGGGCAGAGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
736 919 0.178992 AGAGGAGAGGAGGATCTGCG 60.179 60.000 0.00 0.00 42.05 5.18
742 925 1.216678 GGTGATGAGAGGAGAGGAGGA 59.783 57.143 0.00 0.00 0.00 3.71
834 1049 1.069227 CAAGGAAGCAAACGTACCAGC 60.069 52.381 0.00 0.00 0.00 4.85
836 1051 0.948678 GCAAGGAAGCAAACGTACCA 59.051 50.000 0.00 0.00 0.00 3.25
856 1071 1.491563 GAGACGAACGCAACGCAAT 59.508 52.632 0.00 0.00 0.00 3.56
932 1156 3.551407 GCGATCTCCCCACCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
933 1157 3.551407 GGCGATCTCCCCACCTCC 61.551 72.222 0.00 0.00 0.00 4.30
934 1158 3.551407 GGGCGATCTCCCCACCTC 61.551 72.222 9.89 0.00 42.36 3.85
942 1166 3.070018 CAGTGAATATTGGGGCGATCTC 58.930 50.000 0.00 0.00 0.00 2.75
955 1179 3.006677 GGGGCCTGGCAGTGAATA 58.993 61.111 22.05 0.00 0.00 1.75
986 1254 0.597568 CTGCGGAAAATGGAAGTGCA 59.402 50.000 0.00 0.00 0.00 4.57
987 1255 0.881118 TCTGCGGAAAATGGAAGTGC 59.119 50.000 0.00 0.00 0.00 4.40
1001 1269 2.363555 GCGCTCGATCTGATCTGCG 61.364 63.158 31.27 31.27 45.54 5.18
1002 1270 0.239613 TAGCGCTCGATCTGATCTGC 59.760 55.000 16.34 16.21 0.00 4.26
1883 2328 6.269769 TCCCTGAAAAGGAAAATTATGCAAGT 59.730 34.615 0.00 0.00 0.00 3.16
1884 2329 6.700352 TCCCTGAAAAGGAAAATTATGCAAG 58.300 36.000 0.00 0.00 0.00 4.01
1891 2336 7.069208 GCATAGAGATCCCTGAAAAGGAAAATT 59.931 37.037 0.00 0.00 36.85 1.82
1927 2373 2.186384 CTTCTCAGGCCCTCGCAG 59.814 66.667 0.00 0.00 36.38 5.18
1951 2397 0.603569 ATGGCGTCACCGGATCTATC 59.396 55.000 9.46 0.00 43.94 2.08
1982 2428 4.661993 TTTTTCGTCAACATCGATCCTG 57.338 40.909 0.00 0.00 37.18 3.86
1985 2431 6.619854 CGAGTAATTTTTCGTCAACATCGATC 59.380 38.462 0.00 0.00 37.18 3.69
1986 2432 6.090358 ACGAGTAATTTTTCGTCAACATCGAT 59.910 34.615 10.12 0.00 46.07 3.59
1987 2433 5.403166 ACGAGTAATTTTTCGTCAACATCGA 59.597 36.000 10.12 0.00 46.07 3.59
1988 2434 5.499955 CACGAGTAATTTTTCGTCAACATCG 59.500 40.000 12.30 0.00 46.07 3.84
2022 2468 8.755028 TGTTTATGACTTGTATGAGCTAGGTAA 58.245 33.333 0.00 0.00 0.00 2.85
2023 2469 8.301252 TGTTTATGACTTGTATGAGCTAGGTA 57.699 34.615 0.00 0.00 0.00 3.08
2024 2470 7.182817 TGTTTATGACTTGTATGAGCTAGGT 57.817 36.000 0.00 0.00 0.00 3.08
2025 2471 9.197694 GTATGTTTATGACTTGTATGAGCTAGG 57.802 37.037 0.00 0.00 0.00 3.02
2026 2472 9.750125 TGTATGTTTATGACTTGTATGAGCTAG 57.250 33.333 0.00 0.00 0.00 3.42
2115 2563 1.805254 CAAGGCTTTGGGCGATCAG 59.195 57.895 0.00 0.00 42.94 2.90
2173 2621 4.525487 TCGTATTACATAAGGTAGCTGGGG 59.475 45.833 0.00 0.00 32.49 4.96
2178 2626 7.331193 CCAGGAAATCGTATTACATAAGGTAGC 59.669 40.741 0.00 0.00 32.49 3.58
2240 2688 6.748658 CGATTCAGCAGAGATTTGCAAAAATA 59.251 34.615 17.19 0.00 46.47 1.40
2241 2689 5.575606 CGATTCAGCAGAGATTTGCAAAAAT 59.424 36.000 17.19 7.62 46.47 1.82
2283 2736 1.269723 CGGTACTCAGCAGTTCAGTCA 59.730 52.381 0.00 0.00 33.62 3.41
2300 2753 2.270352 TTGCAGAAAATCCTCACGGT 57.730 45.000 0.00 0.00 0.00 4.83
2317 2770 1.811965 TGACATTGGTGAGGCGATTTG 59.188 47.619 0.00 0.00 0.00 2.32
2320 2773 0.615331 ACTGACATTGGTGAGGCGAT 59.385 50.000 0.00 0.00 31.91 4.58
2321 2774 0.037326 GACTGACATTGGTGAGGCGA 60.037 55.000 0.00 0.00 31.91 5.54
2323 2776 1.271054 ACTGACTGACATTGGTGAGGC 60.271 52.381 0.00 0.00 36.71 4.70
2333 2794 2.875672 GCATGCCCTTAACTGACTGACA 60.876 50.000 6.36 0.00 0.00 3.58
2366 2827 1.610522 CACCACTGCTTTCTTCCTTGG 59.389 52.381 0.00 0.00 0.00 3.61
2397 2858 6.624352 AATCCATTTATCACCGTTGATGAG 57.376 37.500 5.61 0.00 42.79 2.90
2406 2867 9.868277 TGTGAATAACAAAATCCATTTATCACC 57.132 29.630 0.00 0.00 35.24 4.02
2414 2981 8.805175 TCTGTTGATGTGAATAACAAAATCCAT 58.195 29.630 0.00 0.00 43.61 3.41
2471 3038 1.670967 GCCTTTCTGCATTTCAGTGCC 60.671 52.381 0.00 0.00 44.43 5.01
2482 3049 1.497991 TATATGACGCGCCTTTCTGC 58.502 50.000 5.73 0.00 0.00 4.26
2490 3057 5.515548 TTTGAAGATGATATATGACGCGC 57.484 39.130 5.73 0.00 0.00 6.86
2528 3097 1.292223 CGCGTCCTTCTCCTTTCCA 59.708 57.895 0.00 0.00 0.00 3.53
2529 3098 0.320508 AACGCGTCCTTCTCCTTTCC 60.321 55.000 14.44 0.00 0.00 3.13
2534 3103 0.389426 TTAGCAACGCGTCCTTCTCC 60.389 55.000 14.44 0.00 0.00 3.71
2556 3125 4.253685 TGAGCAATGCCTGTTACTAGTTC 58.746 43.478 0.00 0.00 0.00 3.01
2558 3127 3.981071 TGAGCAATGCCTGTTACTAGT 57.019 42.857 0.00 0.00 0.00 2.57
2560 3129 5.123820 GTGAAATGAGCAATGCCTGTTACTA 59.876 40.000 0.00 0.00 0.00 1.82
2564 3133 2.028748 GGTGAAATGAGCAATGCCTGTT 60.029 45.455 0.00 0.00 0.00 3.16
2596 3168 9.071276 TGGCAAGAGGATGATCTATTTATTTTC 57.929 33.333 0.00 0.00 0.00 2.29
2607 3179 3.336468 CAGCTATGGCAAGAGGATGATC 58.664 50.000 3.10 0.00 41.70 2.92
2648 3220 6.569780 TGATGGCATGAAATCATTTCTTGAG 58.430 36.000 23.68 8.21 43.56 3.02
2656 3228 3.949754 ACGACTTGATGGCATGAAATCAT 59.050 39.130 3.81 0.00 36.96 2.45
2657 3229 3.346315 ACGACTTGATGGCATGAAATCA 58.654 40.909 3.81 1.35 0.00 2.57
2677 3249 5.695816 GGATCAGAGATCTGCAAAGATGTAC 59.304 44.000 0.00 0.00 43.46 2.90
2680 3252 4.704965 TGGATCAGAGATCTGCAAAGATG 58.295 43.478 0.00 0.00 43.46 2.90
2684 3256 5.106876 TGAATGGATCAGAGATCTGCAAA 57.893 39.130 0.00 0.00 43.46 3.68
2696 3268 0.554305 AGCAGGGCATGAATGGATCA 59.446 50.000 1.99 0.00 43.67 2.92
2701 3273 0.752009 AGCAGAGCAGGGCATGAATG 60.752 55.000 1.99 0.00 0.00 2.67
2703 3275 1.077930 GAGCAGAGCAGGGCATGAA 60.078 57.895 1.99 0.00 0.00 2.57
2716 3288 0.034476 TGTGGTCAAGAGCAGAGCAG 59.966 55.000 1.67 0.00 43.32 4.24
2740 3322 2.402564 AGATACCCAGGGACACATCTG 58.597 52.381 14.54 0.00 0.00 2.90
2741 3323 2.877154 AGATACCCAGGGACACATCT 57.123 50.000 14.54 11.24 0.00 2.90
2742 3324 4.160329 TGATAGATACCCAGGGACACATC 58.840 47.826 14.54 9.09 0.00 3.06
2744 3326 3.699025 TGATAGATACCCAGGGACACA 57.301 47.619 14.54 0.00 0.00 3.72
2745 3327 3.709653 TGTTGATAGATACCCAGGGACAC 59.290 47.826 14.54 2.25 0.00 3.67
2746 3328 4.002256 TGTTGATAGATACCCAGGGACA 57.998 45.455 14.54 0.00 0.00 4.02
2747 3329 6.017192 TCTATGTTGATAGATACCCAGGGAC 58.983 44.000 14.54 3.05 36.44 4.46
2749 3331 6.935240 TTCTATGTTGATAGATACCCAGGG 57.065 41.667 2.85 2.85 40.27 4.45
2750 3332 9.224267 CATTTTCTATGTTGATAGATACCCAGG 57.776 37.037 0.00 0.00 40.27 4.45
2751 3333 8.725148 GCATTTTCTATGTTGATAGATACCCAG 58.275 37.037 0.00 0.00 40.27 4.45
2752 3334 8.439971 AGCATTTTCTATGTTGATAGATACCCA 58.560 33.333 0.00 0.00 40.27 4.51
2784 3378 0.961753 ATAGCGACGATGATGAGCCA 59.038 50.000 0.00 0.00 0.00 4.75
2796 3390 5.953183 AGAGATGATGATGAAGATAGCGAC 58.047 41.667 0.00 0.00 0.00 5.19
2797 3391 6.587206 AAGAGATGATGATGAAGATAGCGA 57.413 37.500 0.00 0.00 0.00 4.93
2798 3392 6.867293 TGAAAGAGATGATGATGAAGATAGCG 59.133 38.462 0.00 0.00 0.00 4.26
2799 3393 8.780846 ATGAAAGAGATGATGATGAAGATAGC 57.219 34.615 0.00 0.00 0.00 2.97
2802 3396 9.496873 GAAGATGAAAGAGATGATGATGAAGAT 57.503 33.333 0.00 0.00 0.00 2.40
2803 3397 8.706521 AGAAGATGAAAGAGATGATGATGAAGA 58.293 33.333 0.00 0.00 0.00 2.87
2804 3398 8.769891 CAGAAGATGAAAGAGATGATGATGAAG 58.230 37.037 0.00 0.00 0.00 3.02
2805 3399 8.265764 ACAGAAGATGAAAGAGATGATGATGAA 58.734 33.333 0.00 0.00 0.00 2.57
2806 3400 7.711339 CACAGAAGATGAAAGAGATGATGATGA 59.289 37.037 0.00 0.00 0.00 2.92
2807 3401 7.711339 TCACAGAAGATGAAAGAGATGATGATG 59.289 37.037 0.00 0.00 0.00 3.07
2808 3402 7.793036 TCACAGAAGATGAAAGAGATGATGAT 58.207 34.615 0.00 0.00 0.00 2.45
2809 3403 7.179076 TCACAGAAGATGAAAGAGATGATGA 57.821 36.000 0.00 0.00 0.00 2.92
2810 3404 7.856556 CATCACAGAAGATGAAAGAGATGATG 58.143 38.462 0.00 0.00 46.51 3.07
2822 3416 4.616381 GTCGATCGATCATCACAGAAGATG 59.384 45.833 22.50 4.21 45.28 2.90
2823 3417 4.518590 AGTCGATCGATCATCACAGAAGAT 59.481 41.667 22.50 1.02 0.00 2.40
2826 3420 3.378427 ACAGTCGATCGATCATCACAGAA 59.622 43.478 22.50 0.00 0.00 3.02
2831 3425 4.105486 GTTTGACAGTCGATCGATCATCA 58.895 43.478 22.50 20.07 0.00 3.07
2838 3432 1.124297 CGGTTGTTTGACAGTCGATCG 59.876 52.381 9.36 9.36 30.76 3.69
2844 3438 3.472652 TGCTTATCGGTTGTTTGACAGT 58.527 40.909 0.00 0.00 0.00 3.55
2846 3440 4.068599 TGATGCTTATCGGTTGTTTGACA 58.931 39.130 0.00 0.00 0.00 3.58
2847 3441 4.403453 GTGATGCTTATCGGTTGTTTGAC 58.597 43.478 0.00 0.00 0.00 3.18
2848 3442 3.438781 GGTGATGCTTATCGGTTGTTTGA 59.561 43.478 0.00 0.00 0.00 2.69
2849 3443 3.190327 TGGTGATGCTTATCGGTTGTTTG 59.810 43.478 0.00 0.00 0.00 2.93
2850 3444 3.190535 GTGGTGATGCTTATCGGTTGTTT 59.809 43.478 0.00 0.00 0.00 2.83
2851 3445 2.747446 GTGGTGATGCTTATCGGTTGTT 59.253 45.455 0.00 0.00 0.00 2.83
2852 3446 2.290008 TGTGGTGATGCTTATCGGTTGT 60.290 45.455 0.00 0.00 0.00 3.32
2853 3447 2.355197 TGTGGTGATGCTTATCGGTTG 58.645 47.619 0.00 0.00 0.00 3.77
2854 3448 2.779755 TGTGGTGATGCTTATCGGTT 57.220 45.000 0.00 0.00 0.00 4.44
2855 3449 4.623932 ATATGTGGTGATGCTTATCGGT 57.376 40.909 0.00 0.00 0.00 4.69
2856 3450 5.469760 TGAAATATGTGGTGATGCTTATCGG 59.530 40.000 0.00 0.00 0.00 4.18
2857 3451 6.544038 TGAAATATGTGGTGATGCTTATCG 57.456 37.500 0.00 0.00 0.00 2.92
2858 3452 8.332996 AGATGAAATATGTGGTGATGCTTATC 57.667 34.615 0.00 0.00 0.00 1.75
2859 3453 8.162085 AGAGATGAAATATGTGGTGATGCTTAT 58.838 33.333 0.00 0.00 0.00 1.73
2860 3454 7.512130 AGAGATGAAATATGTGGTGATGCTTA 58.488 34.615 0.00 0.00 0.00 3.09
2864 3458 8.217131 TGAAAGAGATGAAATATGTGGTGATG 57.783 34.615 0.00 0.00 0.00 3.07
2870 3464 8.343366 CACAGGATGAAAGAGATGAAATATGTG 58.657 37.037 0.00 0.00 39.69 3.21
2889 3483 8.814931 TGAAATAATTCACCAAATTCACAGGAT 58.185 29.630 0.00 0.00 40.59 3.24
2983 3616 1.933181 TCCGCTCGTTGATGCTAATTG 59.067 47.619 0.00 0.00 0.00 2.32
2995 3628 0.461516 TCTCGTAGTGATCCGCTCGT 60.462 55.000 0.00 0.00 0.00 4.18
3117 3750 5.366477 TGCACACCCTAGATCAATCTTATGA 59.634 40.000 0.00 0.00 38.32 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.