>input_sequence_58545
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-------------------------------------------------------------------CCG----------
----CAGATCAGATCGAGCGCTA--------------GGCTGTCAGAT---------CCATCCATGGCCCCCTCCCAAGA
AGTCG------------CCGCCGCCACCAAGGAGCCGTCCACCAACGGCAACGGGACACA---------------GGCCG
CCGCCGCCCCGAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGGTCGGTGGCGGCGCAC
CCGTGGCACGACCTGGAGATCGGCCCGGACGCGCCCACAATCTTCAACTGC-----------------------------
----------------------------------------------------------GTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCCGGGTGCTTCCTCCGGGCCAAGGCCATCGGCCTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCGCCGAGATC
AGAAGATTCTTCGAGGACTGTGAGTCATTGATGCCTCTGATCAGATCAGGTTAATTCGTCACAAGAGAATGTGTTCCTGA
T---------------------ATGTGTTTCTTTGATTTTGATTGATT-----GGGGAATTCATCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGTCCCCA
TTCCCCGGTTTTCGATCCTCGATTCATGTCGAAACGCGATCAATTAGCAAACCATTCAAAGTGATATATGCATCCAACTG
ATGATGAACTTGCATAA-TTTTCCTTTTCAGGGATCTCTATGCCACCTACATCTGCGAGGGCCTGAGAAGGTAGATGATA
GATCCGGTGACGCCATGCCGCTTGCTGCAGGATCGATGTTGACGAAAAATTACTCGTGTCGAGAGCGTTACCTAGCTCAT
ACAAGTCATAAACATACATACATACATTCTTGTTTTGTGTTACCTACCTGCATACACAA--ATACACATACTAGTATATG
ATCTGATCGCCCAAAGCCTTGCATTAAGGCAGTAGCAGCCAGATAAACAGGGCATTCTTTC-------------------
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>chr3B_1_TraesCS3B01G611800
GTGGTAGTGGTTCGCATGCATGTATGCATACGCCAGTAGTATG--------TGTGTATGATACGCCATGCGTAGGCACGA
CGAAAGCGCGTTCGCGTTTGAT-----GCTCTGCTCTGGGGTCGTTGGCGTTCGCTGGATCACGCG-TTTTTTCAACAAG
TTTGATTTGGTTGATTCAACACGGACCATGCTGACAGTACTAGTAGATACGTGCGTACATTA------------------
--------------------------------------------------------------------------------
---------------------------------------------ACATTACAAAGAATGTGAGTAATACAGAAATCCAA
CCCCTCAAACACCTGCGGACGCGTCCAGGCGCGTCGGCGGACACTGACCAGGCACTTCCTAAATCCGTGCCTCCACACCC
GCGTATCTCATAGCTGGCACCATATGTCCATATGAATTCATGCAACGTGGTACGTAGATGACCAAACTATTAAAATCGAC
AGAAAATAGACATATAAGCCGATACCAAGCGGGGCAATAATAATGTAAAAACATGAGCAAAAAGGTCATTCATGGTGAGC
CCGGAGATGGTCCAAGGCTAAGGATAGAGGCGTGTGGTGGCGTTGACGTGGCCTGGCCATCAC-----GGCAGCATCCCC
------------CCCACGTGGAGGCACGGCATGCATAGTCAGACAGATTTTAATTCACGCCGGCAACATATCCCGTAGGA
AACCCAAGGCCAAGTCAGCACCGCCGATCTTTTCCA-TCTTCTTCTTCCTC-----CTCCTCTGCCCTCCCTGCACCGGC
AGCCCGCAGGCAGTCGGTGGAGG--CTATAAGAAGGGACGCAGATCCTCCTCTCCTCTCATCAC-------CACAA----
--ACAGCTGATCTGAGTCCACAGCAG-----AGCAC----------CATTCTTCTCTTCCATTCTACTCAACGCAAAGTC
TC----CCGCTGGTACGTTTGCTTCCTTGCATTGCGTTGCGTTCGT-----CTC----CTCCTCCTCTTCCCCCTCATAC
TCTGCTCCGCCCAGATCTCCTCCACGCCGCCGGGAGGGAGGTGGGGAGATCGCCCCAATATTCACTGCCAGGCCCCG---
-----------------------------------------ACTAACATACTGTGCACTTCCATTTTCCG----------
----CAGATCAGATCGAGCGCTA--------------GGCTGTCAGAT---------CCATCCATGGCCCCCTCCCAAGA
AGTCG------------CCGCCGCCACCAAGGAGCCGTCCACCAACGGCAACGGGACACA---------------GGCCG
CCGCCGCCCCGAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGGTCGGTGGCGGCGCAC
CCGTGGCACGACCTGGAGATCGGCCCGGACGCGCCCACAATCTTCAACTGC-----------------------------
----------------------------------------------------------GTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCCGGGTGCTTCCTCCGGGCCAAGGCCATCGGCCTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCGCCGAGATC
AGAAGATTCTTCGAGGACTGTGAGTCATTGATGCCTCTGATCAGATCAGGTTAATTCGTCACAAGAGAATGTGTTCCTGA
T---------------------ATGTGTTTCTTTGATTTTGATTGATT-----GGGGAATTCATCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGTCCCCA
TTCCCCGGTTTTCGATCCTCGATTCATGTCGAAACGCGATCAATTAGCAAACCATTCAAAGTGATATATGCATCCAACTG
ATGATGAACTTGCATAA-TTTTCCTTTTCAGGGATCTCTATGCCACCTACATCTGCGAGGGCCTGAGAAGGTAGATGATA
GATCCGGTGACGCCATGCCGCTTGCTGCAGGATCGATGTTGACGAAAAATTACTCGTGTCGAGAGCGTTACCTAGCTCAT
ACAAGTCATAAACATACATACATACATTCTTGTTTTGTGTTACCTACCTGCATACACAA--ATACACATACTAGTATATG
ATCTGATCGCCCAAAGCCTTGCATTAAGGCAGTAGCAGCCAGATAAACAGGGCATTCTTTCCCCAGCTACCTTATGTAAT
ACGATTTCCTGGCTGAATGAATATGAGATGTTGGTATACTTTTTCCCTA-----TTTTTGCAAATCTCTGCTGAATCGTT
TATTTTGTCGCAACTTGACTGAACTGCTGAGTACCGTGAGGATTTTCTGCAAATCG--------CCTCACCAATGTCAGT
CAGTTAAGGGCATGCTTGTGCCAACACCAAGGAAGAAAGCAGTGGTGTTTCAATCCCCTCATCAACGG------------
--------------------------------------------------------------------------------
--------------TGATAAATGGATTTTGTTATTCACATCAACAGAAAGTGCCTTCATCAACAGTAATTTAAGAATGGC
ACTGAAATGCAGAAAGGCGCGTCATATATCATCTTCAAAACAGTTTCTT--AAAATTGGAAAGGAGAAGGACGCGTTGCT
AACCGAACTAGTAACAGGCATTGCTCATTTCACCTTTCAT---GCAGGAAAATAAATAGATCATCCTCTTGCCATAGCTG
GTCAGCGAAACAATGTGAACTCAAGAAATGATTTCATGCCATCAAGTCGTACATCTTTGCAGATCTCTGATCCATTCATG
CCCTGCTCTGCTCTGCTCTTGACCACAGGT----------GCAGATGTGTCCCTGGGTATC------------TATCAAC
ATAGAAAATGCTATCAGTGGCTCATCATCGTCGCTATCTTCATCATCATCTCTTTCATCTTCTGTGATGATCGATCGACT
GTCAAACAACCGATAAGCATCACCACATATTTCATCTCTTTCATCCTGTG------------------------------
---------AATTTGGTGAATTATTTCATCACCATCTTCATCAGCGGTACAACAAACTTACAAGACAAATCCATTTGTCA
GATATATGATGTTAGCAATTAGCATCAACGAGCGGATCACTACGAGACCACACGAAATATCTCGGATAATCATTTTCACC
CACAATACACATCCACTTGTCAGATGCGAAAAGCTGCCAGGCAGCAAAGATGATTCCAAAGCATAATAATCATAAGATTG
ATCTAGGGTGTGCATTGGTTTGTGCCCAAATCATTCAAACAAAACT
>chr3D_6
-----AGTGGTTCGCATGCATGTATGCATACGCCAGTACTATG--------T----ATGATACGCCGCAC----GAACGA
CGAAAGCGCGTTCGCGTTTGATCCTCTGCTCTGCTCTGGGGTGGTTGGCGTTGGCTGGATCACGCGGTTTTTTTAATAAG
TTTGATTGA--TGATTAAACACGGACCGTGCT--------------TACAACAGAAGGGAAGGGAAGGCCACCGACACGC
AAAAAGGGCAGGCGACAGTTGTAGAGCTACCAAATTCAGGCATTCAGTGATGCACAACTCACTCTCAGCGACGAATGGCG
TGAAATACAGAGGTACAGAACCACATCAAGCAGCCATACATACATACAGTAAAAAAAATGTGAGCACTCTACAGAAAAGT
AACGCACATGCACACGCAGTCACTTCTGATCCAGTCTCCTCTCATCTCCAGGGTAGGAGCGTGTGCTGGC----------
--------------------------------------------------------------------------------
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-----------------------------------GTTGGCGTTGACGTGGCCTGGCCATCAG-----GGCAACATGCCT
GCCTGACCTTATCCCACGTGGAGGCACGTCATTCATGGTCAGCCTGATTTTAATTCACGCCGGCCCGG------------
AA-----GGCCAAGTCAGCAGTTCAGCACCGCCGTTCTCATCTTCATCTTC-----TTCCTCTGCCCTCCCTGCACCGGC
AGGCA----GGCAGGTAGTCGAGGCCTATAAGACGGGAGGCAGGGTCTCTTCTCCTCTCATCAC-------CACAACACA
GCACAGCCG--CTGAGTCCACAGCAG-----AGCAGAGCAGAGCAGCATTCTTCTCTTCCATTCTACTCAACGCAAAGTC
TCTCTATCTCAGGTACGTTTGCTTCGTTGCGTTGCGTCGTCTCC-------CTC----CTCCTGCTCTTCCCCCTCATAC
TCTGCTCCGCCCACATCTCCTCCA----------------------------CCCCAAGATCGACTGCCAGGCCCCG---
-----------------------------------------ACTAACATACCGCACACCTCCATTTTCGCAGATCAGATC
AGATCAGATC-----GAGCGCTA--------------GGCTGTAAGAT---------CCAACCATGGCCCCCTCACAGGA
AGTCGCGGCCCCCGCCGCCACCGCCACCAAGGAGCCATCCGCCAACGGCAACGGGACCAA---------CGGCACGCCCG
CAGCCGCCCCCAAGACCAAGGCCCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCGCCGCCCAC
CCGTGGCACGACCTGGAGATCGGCCCGGACGCTCCCACAATCTTCAACTGCGTAAGCACGCAACCTTCTTCTTCCTCCTC
CCGCCACCACCAATTCCGGCCGCCACGCAAACTAAATCATCTCCGCAACTCCGTGCAGGTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCCGGATGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGATCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCGCCGAGATC
AGGCGATTCTTCGAGGACTGTGAGTCATACTACTGCTACTTGTCATGTTTTTACTACTGACCGACTGCAA----------
-------------TGTTTTAGACTGATGCTGACTGACA--ATTTTATT-----GGGGAATTCATCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCGGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGTCCCCA
TTCCCCGGTTTTCGATTCTCGATTCATGTCGAAACACGAGCAATTAGCAAACCATTCAAAGTGATATATGCATCCAACTG
ATGATGACGTTTCATGATTTTTCCTTTACAGGGATCTCTATGCCACCTACATTTGCGAGGGCCTGAGAAGATAGATA---
GATCCGGTGATGCCGCCCCGCTTGCTGGAG----GATGTTGATGAAAAATTACTCGTGTCGAGAGCGA------------
---------------ACATACATACATTCTTGTTTTCAGTTACCTACCTGCATACATATACATACACATACTAGTATATG
ATATGATCGCCCAAAGCCTTGCGTTAAGGCAGTAGCAGCCAGATAAACAGGGCATTCTTTTCCCAACTACCTTATGTAAT
ACGATTTCCTGGCTGAATGAATATGAGATGTTGGTATATCTTTTTTCCCCCTATTTTTTGCAAATCTCTGCTGAGTCGTT
TATTTTGAATAACAAATCTAC-------GAGTGTTGTCTGGATACTCTGGAATGCCTAGAATCACTTCACCAAAGTCAGT
CCGTTAAGGGCATGCTTGTGCCAACA-CAAGGAAGAAAGCAGTGGTGTTTCAATCCTTTCATCAACAG------------
--------------------------------------------------------------------------------
--------------TGATAAGTTGATTTTGTTATTCACATCAACAGAAAGTACCTTCATCAACAGTATTTTGAGAATTGT
GCTGAAATACAGAAAGACGCGTCATATACCATCTTCCAAACAGTTTCTTATAAAATCAGAAAAGAGAAAG----------
----------------------GCGCATTTCACCTTTCAT---GCAGTAAAATAGATAAATCATCCTCTCGCCGTAGCTG
GTCA---AAACAATGTGAATTCAAGAACAGATTTCATGCCATCAAGTCATAGATCGTTGCAGATCTCAGATCAAGTCATG
CCCTGCTATGCTCTGCTCTTGACCACAGGT----------GTGTACAAATGGAACATCAGA------------TATCAAC
ATAGAAAATGCTATCAGCGGCTCATCGTC------------------ATCTCTTTTGTCCTCTGCGATGATTGATCGTCA
A-------------AAGAATCACAACATATTTCATCTCTTTCGTCCTGTGAATTTCATGAGTGGCAGGCCATGTTTGCCA
TGTTCTGCAAATTTGGTGAATTATTTCATCACCATCTTCATCAGCGGTACAACAAACTTACAAGACAAATCCATTTGTCA
GATATACGATGTTAGTAATTAGCATCAGCGAGCGGATCACTACGAGACCACACAAAATGTCTCAGATAATCATTTTCACC
CACAACACACATCCACTTGTCAGATGCGAAAAGCTGCCAGGCAGCAAGGATGATTCCAAAGCATAATAAACATAAGATTG
ATCTAGGGTGTGCATTGGTTTGTGCCCAAATCATTCAAACAAAACT
>chr3D_16
---------------ATGTATGTATGCATACGACGCCAGGACGTACTATGTT----ATGATACGCCACAC----GCACGA
CGAAAGCGCGTTCGCGTTTGATCCTCTGCTCTGCTCTGGGGTGGTTGGATCACGC-----------GTTTTTTCAATAAG
TTTGATTGA--TGATTGAACACGGACAGTGCTGACAGTACTAGTACTACAACACAAGCGAACGGAAGGCCACCGACACGC
GAAAAAGGCAGAGGCATATGACATTACAG-CAAATTCAGACATTCAGTGGTGGGCGACTCTGTTTTACTTTGTCTACAAA
CAAAAGAGGGAAAA------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------ATGGGTAAAAAAAGAAGCCTATGGCGGCTTTGTGAAATGTGAGGATGAATGGCCCGGCAACGTAC--
--------------------------------------------------------------------TATCACGCAGGA
AA-----GGCCACCCAT----------------CTTCTCATCTTCTTCTTCCTCCTCTCCTCTGCCCTCCCTGCAC----
------------------GCAGT--CTATAAGAAGGGAGGCACAGCATCCTCTCCTCTCATCAC-------C-----ACA
ACACAGCCG--CTGAGTCCACAGCAC-----------------------TCTTCTCTTCCATTCAACTCCACGCAAAGTC
TCTCTCCCTCAGCTACGTTTGCTTCGTTGCCTTGTGTCGCGTTCGT-----CTCATCCCTCCTCGTCTTCCTTCTGACAC
TCTCATCTCCTCCATA---------------------------------------CCAGATTCATTGCCAGGCCCCG---
-----------------------------------------ACTGAT-------ACACTTCCAATTTCGCACATCACATC
AGATCAGATCAAATCGAGCGCTA--------------GGCTGTAAGAT---------CCATCCATGGCTCCTTCACAGCA
AGT---------------CGCCGCCACCAAGGAGCCATCCGCCAACGGCA------------------------CGGCCG
CACCAGCCCCCAAGACCAAGACCCCGGCGCTGAACGAGCGGATCCTCTCCTCGATCACGCGCCGGTCGGTGGCGGCGCAC
CCGTGGCACGACCTGGAGATCGGCCCGGACGCTCCCACAATCTTCAACTGCGTAAGCACGCAACCTTCTTCTTCCTCCTC
CCGCCACCACCAATTCCGGCCGCCACGCAAACTAAATCATCTCCGCAACTCCGTGCAGGTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGGGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCCGGATGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGACCTCCCTCCCCACCGCCTCGCAGAGATC
AGGCGATTCTTCGAGGACTGTAAGTCATTGATGACTCTGATCAG-----GTTAATTCGTCAGAAGACAATGTGCTCCTGA
ATGTGTTTTCCTCTGTTTCTGAATGTGTTTCTTTGATT------GATT-----TGGGGTT---TCAGACAAGAAGAACGA
GAACAAGGAGGTTGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGTCCCCA
TTCCCCGGTTT---------------------------------------------------------------------
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>chr3A_513
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-----------------------------GCGTGTGTTGGCGTTGACGTGGCCTCGCCATCCCATCACGGCAACATGCTT
GACA---------CCACGTGGAGGCACGTCATTCATGGTCAGCCTGATTTTAATTCACGCCGGCAACATATCTCGCAGCA
AA-----GGCCGAGTCAGCAATTCAGCACCACCCTTCTCATCTTCATCTTC-----TTCCTCTGCCCT----GCGCCGGC
AGGCA----GCAGATGGTGGAGG--CTATAAAAAGGGAGGCAGAGTATCCTCTCATC-----AC-------C-----ACA
CCACAGCTGATCTCAGTCCACAGCACAGCAGAGAAG----------CAT-----TCTTCCATTCTACTCAACGCAAAGTC
C--CTCCCTCCGGTACGTTTGCTTCGTTGCGTTGCGTCGTCGAC-------CTC----CTCCTGCTCTTCCCCCCCATAC
TCTGCTCCGGCCAGATCTCCTCAACACCG---------------------------------------------CCGGAA
GGGAGTGGTGAGCTCGCCCCAAGATCGACTGCCAGGCCCCGACTAACACACTGCACACTTCCATTTCCGCAGATCAGATC
---------------GAGCGCTA--------------GCCTCGCCGCAACATCCATCCCATCCATGGCCCCCTCCCAAGA
AGTCGCGCCCCCTGCCGCCGCCATCACCAAGGACCCATCCACCAACGGCAACGGCAACGGCAACGGCAACGGCACAGCCG
CACCCGCCCCCAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCGCCGCCCAC
CCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACAATCTTCAACTGC-----------------------------
----------------------------------------------------------GTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCGGGGTGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTCCCGCCCCACCGCCTCGCCGAGATC
AGGCGCTTCTTCGAGGACTGTAAGTCATTGATGCCTCTGAACTCTGA--------TCCTCAGAAGAGAATGTGCTCCTGA
ATGTGTTTTCTTCTGTTCCTGAATGTGTTTCTCTGATT------GATTGATTGGGGAATTTCATCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGTTCTCC
-TCCCCGGTTTTCGATTCTCGATTCATGTTGAAACATGAGAAATTGAACTGATGA-------------------------
ATGATGATGTTGCATGATTTTTCCTTTTCAGGGATCTCTATGCCACCTACATTTGCGAGGGCCTGAGAAGGTAGATAATA
GACCCGGTGATGCCATGCCGCTTGCTGGAG----GATGTTGATGAAAAATTATTCGTGTCGAAACGT-------------
------------------TACATACATTCTTGTTTTGTGTTACCTACCTGCATACACAA--ATACACATACTAGTATATG
ATATGATCGCCCAAAGCCTTGCATTAAGGCAGTAGCAGCCAGATAAGCAGGGCATTCTTTTCCCAACTACCTTATGTAAT
ACAATTTCCTGGCTGAATGAATATGAGATGTTGGTATACTTTTCCCCACA-------TTGCAAATCTCTGCTGAATCGTT
TATTTTGTCGCAACTGGACTGAACTGCTGAGTGCTGTGTGGATTTTCTGGAAGGCCTAGAATCACCTCACCAAAGTCAGT
CAGTTAAGGGCATGCTTGTGCCAACA-CAAGGAAGAAAGCAGTGGTGTTTCAGTCCCTTAATCAACTACTCCCTCTGTTC
ACTTTTATAAGGCTTTGTAGATGTTTCAGACATTGTGCAAAATAGCTCAATTTCACTTGTCTGAAACGACTTATAAAAGT
GAACGGGGGGAGTATGATAAGTGTATTTTGTTATTCTCATCAACAGAAAGTGCCTTCATCAACAGTAATTTAAGAATTGC
ACTGAAATACAGAAAGACACATCATATGTCATATTCAAAACAGTTTCTTATAAAAACAGAAAAGAGAAGGACGCGTTGCT
AACCTATCGAGTTACAGGCATTGCTCATTTCACCTTTCATCATGCAGTAAAATAAATGAACCGTCCCCTCGCCGTAGCTG
GTCAGCGAAACAATGTGAATTCAAGAAGAAATTTCATGCCATCAAGTCATAGATCGTTGCAGATCTCAGATCAAGTCATG
CCCTGCTATGGTCTGCTCTTGACCACAGGACAGGCAGGGGGTGTACAAATGGAAGATCAGATATGCCCACTGGTATCAAC
ATAGAAAATGCTATCAGCGGCTCATCATC------------------ATCTCTTTTGTCCTCTGCGA-GATTGATCGTCA
A-------------AAGAATCACAACATATTTCATCTCTTTCGTCCTGTGAATTTCATGAGTGGCAGGCCATGTTTGCCA
TGTTTTGCAAATTTGGTGAATTATTTCATCACCATCTTCATCAGCGGTACAACAAACTTACAAGACAAATCCATTTGTCA
GATATATGATGTTAGTAATTAGCATCAGCGAGCAGATCACTACGACGCCGCACGAAATATCTCGGATAATCTTTTTCACC
CACATTAAACATCCACTTGTCAGATGCGAAAAGCTGCCAGGCAGCAAGGATGATTCCAAAGCATAATAAACATAAGATTG
ATCTAGGGTGAGCATTGGTTTGTGCCCAAATCATTCAAACAAAACT
>chr3B_662
ATCTCA--------------------------------------------------------------------------
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-------------------------------------------TCTTCTTC-----CTCCTCTGCCCTCCCTGCACCGGC
AGTCA----GTCAG----TCGAGGCCTATAAAAAGGGAGGCAGAGTCTCCTCTCCTCTCATCA-------TC-----ACA
CCACAGCTG--CTGAGTCCACAGCACAGTACAGCAC----------CATTCTTCTCTTCCATTCTACTCAACGCAAAGTC
C--CTCG----GGTACGTTTGCTTCCTTGCGTTGCGTTCGTCCCCCTCA---TA----CTCCTCCTCTTCCCCCTGATAC
TCTGCTCCGGCCAGATCTCCTCCACACCG---------------------------------------------CCG---
-----------------------------------------ACTAACACACTGCACACCTCCATTTTCACAGATCACATC
T------------------------------CACTTTGCCTTGCTGCAAG---------ATCCATGGCTCCCTCACAGGA
AGTCA------------CCGCCGCCACCAAGGAGCCGTCCACCAACGGCAACGGGACCAACGGAACCAACGGCACGGCCG
CCGCCGCCCCGAAGACCAAGACGCCGGCCCTCAACGAGCGGATCCTCTCCTCCATCACGCGCCGCTCGGTCGCCGCGCAC
CCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACCATCTTCAACTGC-----------------------------
----------------------------------------------------------GTGATCGAGATCCCCAAGGGGA
GCAAGATCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGGGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACGACGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCCGGGTGCTTCCTCCGGGCAAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCGCCGAGATC
AGAAGATTCTTCGAGGACTGTGAGTCATTGATGCCTCTGATCAGATCAGGTTAATTCGTCACAAGAGAATGTGTTCCTGA
T---------------------ATGTGTTTCTTTGATTTTGATTGATT-----GGGGAATTCATCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGTCCCCA
TTCCCCGGTTTTCGATCCTCGATTCATGTCGAAACGCGATCAATTAGCATTCG------AGTAATATATGCATTGAGCTG
ATGTTGCGTCG-------TTTTCGTTTTCAGGGATCTATATGCTACTTACATTGTGGAGGGCCTGAGAAGGTAG------
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>chr3A_706
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-----GCAGGCAGTCGGTGGCGG--CTATAAGAAGGGAGGCAGAGTCTCCTCTCTTCTCCACCATCACACTC-----ACA
CCACAGCTGATCTGAGTCCACAGCAGAGCAGAGCAC----------CATTCTTCTCTCCCATT-----------------
------------CTACGTTTCCTTCGTTGCGTTGCGTTCGTCTCTCTCCACCTCTCTGCTCCTCCTCTTCCCCCTCATAC
TCTGCTCCGCCCACATCTCCTCCACACCACTGGGACTTAGAGGGGTAGATCGCCCCCAGATTCATTGCGAGGCCTCC---
-----------------------------------------ACTAACATACTGCTCACCTCCATTTTCGCACATCAGATC
AGATCAGATC-----GACCGCCCGCTAGGCACACTTCGCTTTGCCGCAACATCCATCCCATCCATGGCCCCCTCCCAAGA
AGTCGCGCCCCCTGCCGCCGCCATCACCAAGGACCCATCCACCAACGGCAACGGCAACGGCAACGGCAACGGCACAGCCG
CACCCGCCCCCAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCGCCGCCCAC
CCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACAATCTTCAACTGC-----------------------------
----------------------------------------------------------GTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCGTCTACCCG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCGGGGTGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTCCCGCCCCACCGCCTCGCCGAGATC
AGGCGCTTCTTCGAGGACTGTAAGTCATTGATGCCTCTGAACTCTGA--------TCCTCAGAAGAGAATGTGCTCCTGA
ATGTGTTTTCTTCTGTTCCTGAATGTGTTTCTCTGATT------GATTGATTGGGGAATTTCATCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAGGCCATCCAGCACTCCATGTCAGT-----
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>chr3A_1034
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---------------------------------------------------------CCATCCATGGCCCCCTCCCAAGA
AGTCGCGCCCCCTGCCGCCGCCATCACCAAGGACCCATCCACCAACGGCAACGGCACA------------------GCCG
CAACAGCCCCCAAGACCAAGACGTCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCGCCGCCCAC
CCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACAATCTTCAACTGC-----------------------------
----------------------------------------------------------GTGATCGAGATCCCCAAGGGGA
GCAAGGTCAAGTAAGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCATGCTCTACTCCTCCGTCGTCTACTTG
CACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAGGAGCCCGT
CGTCCCGGGGTGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGACAAGATCA
TCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGTTGCCTCCCCACCGGCTCGCCAAAATC
AGGCGATTCTTCGAAGACTGTAAGTCATTCATACTCCTGATCAGATCAGGTTAATTCGTCACAAGAGAATGTGTT-----
-------TTCTTTTGTTTCTGAATGTGTTTCTTTGATT--GATTGATT-----GGGGGAT---TCAGACAAGAAGAACGA
GAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGTCGCCTACGAGGCCATCCAGCACTCCATGTCAGT-----
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----------------------------------------------
>SNPs
S-SSS-----------------------------------------------SSSS-----------SS-SSSS------
------------------------------------------S---------------------------------S---
-------SSSS-----S----------S-----------------SSSSSSSS-SSS-SSSS------------------
--------------------------------------------------------------------------------
------------------------------------------------S--S---S--------S-S-SS-S-S-SSSSS
SS-SSSS-SSSS-SSSSSSSSSS-S-S-SSS-SSSSS-SSSSSS-SS-----SSSSSSSSSSS-S-SS--SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-S--S---SS-S---S-------------------------------------------S---S--S
----------------------------S---S---S-----S-S---------------------------S--S----
--SSSSS-------------SSS-S-SS-SSSS-SS---S--------S-------------------------------
--S-S---------------------------------S-----S-----------------------------------
--------------------------------------------------------------------------------
--------S-S-------------------S-------------------------------------------------
-------------------------S----S----SSS--SS---S------------S---------------------
-----------------------------------------------------SS-------------SS----------
-----------S--------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------SS------S------------------------------------S-----------------------S---
----------S----------------S--SSSS--------S------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
--S---------------------------------------------------------S----S--------------
-----------------------------------------------SS-------------------------------
---------------S----------------S-S---S----------S--SS-S-----------------S------
--------------------------S------------------------------S--------S-------------
--------------------------------------------------------------------------------
--------------------S--------------------------------------------------------S--
--------S-------S---------------------------------------SS----S-----------------
----S-S-S---S----------------------------------S----------S----------S---S------
-------------------S-------SS-------------------S--S---S-----------S----S-S-----
-------S---------------------------------SSS-SSSS-SSSS-SSS-SS-------------------
-----------------S-----------SSSSSSSSSSSSSSSSSS--------SS--S----S------S-----S-S
SSSSSSSSSSSSSS---S-----S------------------S-------------------------------------
--------------------------------------------------------------------------------
---------------S-----------S----------------------------------------------------
-----------------------------------------------S---------------------S----------
----------------------------------------------
>forward_479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TAAATCCGTGCCTCCACACC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2397
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GATA
GATCCGGTGACGCCAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
GCGTATCTCATAGCTGGCA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2774
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TCGCCTCACCAATGTCAGTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
