Multiple sequence alignment - TraesCS3B01G611600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G611600 chr3B 100.000 2913 0 0 1 2913 829272469 829275381 0.000000e+00 5380.0
1 TraesCS3B01G611600 chr3B 93.548 930 31 10 997 1913 829289178 829288265 0.000000e+00 1358.0
2 TraesCS3B01G611600 chr3B 81.912 387 45 11 2375 2759 19994196 19993833 1.310000e-78 303.0
3 TraesCS3B01G611600 chr3B 84.892 278 19 11 673 937 829289552 829289285 2.880000e-65 259.0
4 TraesCS3B01G611600 chr3B 87.500 104 9 1 347 450 644507740 644507839 1.830000e-22 117.0
5 TraesCS3B01G611600 chr3A 88.129 1331 96 41 1023 2305 746364021 746362705 0.000000e+00 1526.0
6 TraesCS3B01G611600 chr3A 89.133 911 58 26 1023 1913 746351438 746352327 0.000000e+00 1096.0
7 TraesCS3B01G611600 chr3A 87.539 963 82 21 1061 1995 746313237 746314189 0.000000e+00 1079.0
8 TraesCS3B01G611600 chr3A 92.386 197 15 0 1261 1457 315281077 315281273 6.150000e-72 281.0
9 TraesCS3B01G611600 chr3A 89.899 198 19 1 1261 1457 314776782 314776979 1.340000e-63 254.0
10 TraesCS3B01G611600 chr3A 80.054 371 39 12 2376 2743 600818913 600819251 2.900000e-60 243.0
11 TraesCS3B01G611600 chr3A 79.730 370 41 13 2376 2743 600782807 600783144 1.350000e-58 237.0
12 TraesCS3B01G611600 chr3A 93.464 153 5 5 2762 2913 746362670 746362522 3.780000e-54 222.0
13 TraesCS3B01G611600 chr3A 77.305 423 53 24 539 937 746350883 746351286 2.940000e-50 209.0
14 TraesCS3B01G611600 chr3A 87.611 113 10 2 347 459 434850110 434850218 8.470000e-26 128.0
15 TraesCS3B01G611600 chr3A 86.957 115 10 4 348 461 739801354 739801244 1.100000e-24 124.0
16 TraesCS3B01G611600 chr3D 89.112 1194 60 30 1217 2375 611558763 611559921 0.000000e+00 1421.0
17 TraesCS3B01G611600 chr3D 88.579 718 49 19 1217 1913 611568263 611567558 0.000000e+00 841.0
18 TraesCS3B01G611600 chr3D 78.629 744 83 38 540 1218 611569081 611568349 9.650000e-115 424.0
19 TraesCS3B01G611600 chr3D 94.079 152 8 1 2762 2913 611559915 611560065 2.260000e-56 230.0
20 TraesCS3B01G611600 chr3D 90.541 148 14 0 1071 1218 611558530 611558677 2.290000e-46 196.0
21 TraesCS3B01G611600 chr3D 87.349 166 8 6 103 261 611569343 611569184 8.300000e-41 178.0
22 TraesCS3B01G611600 chr3D 78.761 113 13 6 545 649 611553309 611553418 6.740000e-07 65.8
23 TraesCS3B01G611600 chrUn 100.000 386 0 0 1436 1821 480633103 480633488 0.000000e+00 713.0
24 TraesCS3B01G611600 chrUn 85.345 116 12 2 347 461 81495685 81495574 6.600000e-22 115.0
25 TraesCS3B01G611600 chrUn 86.364 66 9 0 273 338 101253428 101253493 4.030000e-09 73.1
26 TraesCS3B01G611600 chr1B 88.550 393 37 5 2374 2761 539141294 539141683 1.220000e-128 470.0
27 TraesCS3B01G611600 chr1B 84.635 384 42 9 2376 2757 171104446 171104814 1.650000e-97 366.0
28 TraesCS3B01G611600 chr1B 89.516 124 10 1 1655 1778 663374746 663374626 1.400000e-33 154.0
29 TraesCS3B01G611600 chr1B 90.426 94 9 0 366 459 57618240 57618333 1.100000e-24 124.0
30 TraesCS3B01G611600 chr6A 86.757 370 48 1 1088 1457 361909931 361909563 7.510000e-111 411.0
31 TraesCS3B01G611600 chr6A 79.646 113 15 5 285 397 45409125 45409021 1.120000e-09 75.0
32 TraesCS3B01G611600 chr6A 91.489 47 3 1 280 326 541418162 541418207 2.420000e-06 63.9
33 TraesCS3B01G611600 chr7B 87.059 340 28 9 2376 2701 2229418 2229081 1.280000e-98 370.0
34 TraesCS3B01G611600 chr7B 83.117 385 37 11 2376 2758 215003079 215003437 2.800000e-85 326.0
35 TraesCS3B01G611600 chr7B 80.941 404 42 19 2376 2759 610817150 610817538 1.320000e-73 287.0
36 TraesCS3B01G611600 chr7B 87.931 116 9 2 347 461 372327741 372327630 6.550000e-27 132.0
37 TraesCS3B01G611600 chr2D 83.668 398 40 8 2376 2760 168964784 168964399 4.620000e-93 351.0
38 TraesCS3B01G611600 chr7A 81.726 394 56 6 2377 2760 66423844 66424231 6.060000e-82 315.0
39 TraesCS3B01G611600 chr7A 87.069 116 10 2 347 461 130229654 130229543 3.050000e-25 126.0
40 TraesCS3B01G611600 chr7A 85.345 116 12 2 347 461 1575452 1575341 6.600000e-22 115.0
41 TraesCS3B01G611600 chr7D 81.750 400 47 13 2386 2764 550840099 550839705 7.840000e-81 311.0
42 TraesCS3B01G611600 chr1D 84.314 306 36 8 2468 2772 355693681 355693975 3.670000e-74 289.0
43 TraesCS3B01G611600 chr1D 87.611 113 10 1 347 459 37884070 37884178 8.470000e-26 128.0
44 TraesCS3B01G611600 chr1D 77.778 126 28 0 1454 1579 367848615 367848740 8.650000e-11 78.7
45 TraesCS3B01G611600 chr2B 94.203 69 3 1 1711 1778 680916011 680915943 1.430000e-18 104.0
46 TraesCS3B01G611600 chr1A 77.778 126 28 0 1454 1579 467185492 467185617 8.650000e-11 78.7
47 TraesCS3B01G611600 chr4B 86.441 59 7 1 280 338 618538124 618538181 2.420000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G611600 chr3B 829272469 829275381 2912 False 5380.000000 5380 100.000000 1 2913 1 chr3B.!!$F2 2912
1 TraesCS3B01G611600 chr3B 829288265 829289552 1287 True 808.500000 1358 89.220000 673 1913 2 chr3B.!!$R2 1240
2 TraesCS3B01G611600 chr3A 746313237 746314189 952 False 1079.000000 1079 87.539000 1061 1995 1 chr3A.!!$F6 934
3 TraesCS3B01G611600 chr3A 746362522 746364021 1499 True 874.000000 1526 90.796500 1023 2913 2 chr3A.!!$R2 1890
4 TraesCS3B01G611600 chr3A 746350883 746352327 1444 False 652.500000 1096 83.219000 539 1913 2 chr3A.!!$F7 1374
5 TraesCS3B01G611600 chr3D 611558530 611560065 1535 False 615.666667 1421 91.244000 1071 2913 3 chr3D.!!$F2 1842
6 TraesCS3B01G611600 chr3D 611567558 611569343 1785 True 481.000000 841 84.852333 103 1913 3 chr3D.!!$R1 1810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 729 0.318107 CAACACGCAGCAAAGGGAAG 60.318 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2920 0.181587 TTTTGTGAGGGCTCCACGAA 59.818 50.0 4.31 4.31 37.34 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.025401 GGTGGTTGGCGTTCGCTG 62.025 66.667 16.40 0.00 0.00 5.18
18 19 4.025401 GTGGTTGGCGTTCGCTGG 62.025 66.667 16.40 0.00 0.00 4.85
21 22 4.090057 GTTGGCGTTCGCTGGCTC 62.090 66.667 16.40 0.73 0.00 4.70
22 23 4.617520 TTGGCGTTCGCTGGCTCA 62.618 61.111 16.40 3.35 0.00 4.26
30 31 4.012895 CGCTGGCTCACGCGTTTT 62.013 61.111 10.22 0.00 44.01 2.43
31 32 2.331451 GCTGGCTCACGCGTTTTT 59.669 55.556 10.22 0.00 36.88 1.94
57 58 9.844257 TTTTTCCAATAGGTTTGATTGTTGATT 57.156 25.926 0.00 0.00 33.27 2.57
58 59 9.487790 TTTTCCAATAGGTTTGATTGTTGATTC 57.512 29.630 0.00 0.00 33.27 2.52
59 60 7.773489 TCCAATAGGTTTGATTGTTGATTCA 57.227 32.000 0.00 0.00 33.27 2.57
60 61 8.187913 TCCAATAGGTTTGATTGTTGATTCAA 57.812 30.769 0.00 0.00 33.27 2.69
61 62 8.814931 TCCAATAGGTTTGATTGTTGATTCAAT 58.185 29.630 1.78 0.00 37.17 2.57
86 87 8.973835 TCAATTTAAATTAAATCACACGGACC 57.026 30.769 12.98 0.00 37.39 4.46
87 88 7.751348 TCAATTTAAATTAAATCACACGGACCG 59.249 33.333 13.61 13.61 37.39 4.79
88 89 6.557291 TTTAAATTAAATCACACGGACCGT 57.443 33.333 15.37 15.37 42.36 4.83
89 90 7.024768 ATTTAAATTAAATCACACGGACCGTG 58.975 34.615 38.68 38.68 46.82 4.94
90 91 8.308950 ATTTAAATTAAATCACACGGACCGTGC 61.309 37.037 39.86 0.00 46.13 5.34
97 98 3.224324 ACGGACCGTGCTGACAGT 61.224 61.111 21.02 0.00 39.18 3.55
98 99 1.900016 ACGGACCGTGCTGACAGTA 60.900 57.895 21.02 0.00 39.18 2.74
99 100 1.154016 CGGACCGTGCTGACAGTAG 60.154 63.158 5.48 0.00 0.00 2.57
100 101 1.863662 CGGACCGTGCTGACAGTAGT 61.864 60.000 5.48 0.00 0.00 2.73
101 102 0.388649 GGACCGTGCTGACAGTAGTG 60.389 60.000 3.99 0.00 0.00 2.74
111 112 3.800261 GCTGACAGTAGTGCAACAGAAGA 60.800 47.826 18.03 0.00 41.43 2.87
135 136 4.988598 AAGGCCACCGACACGCAG 62.989 66.667 5.01 0.00 0.00 5.18
139 140 2.325082 GCCACCGACACGCAGAAAT 61.325 57.895 0.00 0.00 0.00 2.17
140 141 1.497278 CCACCGACACGCAGAAATG 59.503 57.895 0.00 0.00 0.00 2.32
141 142 1.497278 CACCGACACGCAGAAATGG 59.503 57.895 0.00 0.00 0.00 3.16
142 143 2.325082 ACCGACACGCAGAAATGGC 61.325 57.895 0.00 0.00 0.00 4.40
143 144 2.324330 CCGACACGCAGAAATGGCA 61.324 57.895 0.00 0.00 0.00 4.92
144 145 1.133253 CGACACGCAGAAATGGCAG 59.867 57.895 0.00 0.00 0.00 4.85
145 146 1.291184 CGACACGCAGAAATGGCAGA 61.291 55.000 0.00 0.00 0.00 4.26
159 160 2.433838 CAGAGGCAGGCGACAGTG 60.434 66.667 0.00 0.00 0.00 3.66
199 203 2.618442 TCAGTGATGCACAACTCACA 57.382 45.000 17.90 0.00 43.35 3.58
204 212 2.810274 GTGATGCACAACTCACACTGAT 59.190 45.455 12.25 0.00 41.13 2.90
226 234 1.668419 ATGGCGTGAAATACAGAGGC 58.332 50.000 0.00 0.00 34.96 4.70
242 250 1.537202 GAGGCACAGAACCACATCAAC 59.463 52.381 0.00 0.00 0.00 3.18
245 253 1.680735 GCACAGAACCACATCAACCAA 59.319 47.619 0.00 0.00 0.00 3.67
247 255 2.951642 CACAGAACCACATCAACCAACT 59.048 45.455 0.00 0.00 0.00 3.16
248 256 4.133820 CACAGAACCACATCAACCAACTA 58.866 43.478 0.00 0.00 0.00 2.24
249 257 4.761739 CACAGAACCACATCAACCAACTAT 59.238 41.667 0.00 0.00 0.00 2.12
250 258 5.937540 CACAGAACCACATCAACCAACTATA 59.062 40.000 0.00 0.00 0.00 1.31
287 295 8.582657 ACATACATACTCATACATACTCCCTC 57.417 38.462 0.00 0.00 0.00 4.30
288 296 8.394822 ACATACATACTCATACATACTCCCTCT 58.605 37.037 0.00 0.00 0.00 3.69
289 297 8.681806 CATACATACTCATACATACTCCCTCTG 58.318 40.741 0.00 0.00 0.00 3.35
290 298 6.615617 ACATACTCATACATACTCCCTCTGT 58.384 40.000 0.00 0.00 0.00 3.41
291 299 7.069986 ACATACTCATACATACTCCCTCTGTT 58.930 38.462 0.00 0.00 0.00 3.16
292 300 8.225416 ACATACTCATACATACTCCCTCTGTTA 58.775 37.037 0.00 0.00 0.00 2.41
293 301 6.963083 ACTCATACATACTCCCTCTGTTAC 57.037 41.667 0.00 0.00 0.00 2.50
294 302 5.834204 ACTCATACATACTCCCTCTGTTACC 59.166 44.000 0.00 0.00 0.00 2.85
295 303 6.027025 TCATACATACTCCCTCTGTTACCT 57.973 41.667 0.00 0.00 0.00 3.08
296 304 7.147177 ACTCATACATACTCCCTCTGTTACCTA 60.147 40.741 0.00 0.00 0.00 3.08
297 305 7.589081 TCATACATACTCCCTCTGTTACCTAA 58.411 38.462 0.00 0.00 0.00 2.69
298 306 8.232412 TCATACATACTCCCTCTGTTACCTAAT 58.768 37.037 0.00 0.00 0.00 1.73
299 307 9.529823 CATACATACTCCCTCTGTTACCTAATA 57.470 37.037 0.00 0.00 0.00 0.98
305 313 8.709272 ACTCCCTCTGTTACCTAATATAAGAC 57.291 38.462 0.00 0.00 0.00 3.01
306 314 8.287350 ACTCCCTCTGTTACCTAATATAAGACA 58.713 37.037 0.00 0.00 0.00 3.41
307 315 9.315363 CTCCCTCTGTTACCTAATATAAGACAT 57.685 37.037 0.00 0.00 0.00 3.06
308 316 9.670442 TCCCTCTGTTACCTAATATAAGACATT 57.330 33.333 0.00 0.00 0.00 2.71
401 409 9.944376 AGTGAGTGAACATACATACTAAAATGT 57.056 29.630 0.00 0.00 42.62 2.71
402 410 9.973246 GTGAGTGAACATACATACTAAAATGTG 57.027 33.333 0.00 0.00 40.29 3.21
403 411 9.719355 TGAGTGAACATACATACTAAAATGTGT 57.281 29.630 0.00 0.00 40.29 3.72
405 413 9.944376 AGTGAACATACATACTAAAATGTGTCT 57.056 29.630 0.00 0.00 40.29 3.41
440 448 8.786898 ACGTATTAAGGAAAAACTAAAAGGTCC 58.213 33.333 0.00 0.00 0.00 4.46
441 449 9.006839 CGTATTAAGGAAAAACTAAAAGGTCCT 57.993 33.333 0.00 0.00 37.08 3.85
463 471 6.585695 CTATATTAGGAAACGTAGGAGGCA 57.414 41.667 0.00 0.00 0.00 4.75
464 472 3.538634 ATTAGGAAACGTAGGAGGCAC 57.461 47.619 0.00 0.00 0.00 5.01
465 473 1.927487 TAGGAAACGTAGGAGGCACA 58.073 50.000 0.00 0.00 0.00 4.57
466 474 1.276622 AGGAAACGTAGGAGGCACAT 58.723 50.000 0.00 0.00 0.00 3.21
467 475 2.463752 AGGAAACGTAGGAGGCACATA 58.536 47.619 0.00 0.00 0.00 2.29
468 476 2.167900 AGGAAACGTAGGAGGCACATAC 59.832 50.000 0.00 0.00 33.17 2.39
469 477 2.093869 GGAAACGTAGGAGGCACATACA 60.094 50.000 7.47 0.00 35.79 2.29
470 478 3.431766 GGAAACGTAGGAGGCACATACAT 60.432 47.826 7.47 0.00 35.79 2.29
471 479 4.202182 GGAAACGTAGGAGGCACATACATA 60.202 45.833 7.47 0.00 35.79 2.29
472 480 4.317671 AACGTAGGAGGCACATACATAC 57.682 45.455 7.47 0.00 35.79 2.39
473 481 3.293337 ACGTAGGAGGCACATACATACA 58.707 45.455 7.47 0.00 35.79 2.29
474 482 3.895656 ACGTAGGAGGCACATACATACAT 59.104 43.478 7.47 0.00 35.79 2.29
475 483 5.074804 ACGTAGGAGGCACATACATACATA 58.925 41.667 7.47 0.00 35.79 2.29
476 484 5.048224 ACGTAGGAGGCACATACATACATAC 60.048 44.000 7.47 0.00 35.79 2.39
477 485 5.048294 CGTAGGAGGCACATACATACATACA 60.048 44.000 7.47 0.00 35.79 2.29
478 486 6.350194 CGTAGGAGGCACATACATACATACAT 60.350 42.308 7.47 0.00 35.79 2.29
479 487 7.148137 CGTAGGAGGCACATACATACATACATA 60.148 40.741 7.47 0.00 35.79 2.29
480 488 6.936279 AGGAGGCACATACATACATACATAC 58.064 40.000 0.00 0.00 0.00 2.39
481 489 6.496911 AGGAGGCACATACATACATACATACA 59.503 38.462 0.00 0.00 0.00 2.29
482 490 7.180946 AGGAGGCACATACATACATACATACAT 59.819 37.037 0.00 0.00 0.00 2.29
483 491 8.474831 GGAGGCACATACATACATACATACATA 58.525 37.037 0.00 0.00 0.00 2.29
484 492 9.302345 GAGGCACATACATACATACATACATAC 57.698 37.037 0.00 0.00 0.00 2.39
485 493 7.973944 AGGCACATACATACATACATACATACG 59.026 37.037 0.00 0.00 0.00 3.06
486 494 7.758076 GGCACATACATACATACATACATACGT 59.242 37.037 0.00 0.00 0.00 3.57
487 495 9.777575 GCACATACATACATACATACATACGTA 57.222 33.333 0.00 0.00 0.00 3.57
529 537 6.515678 CGAGTACTATACAGAAATCTAACGCG 59.484 42.308 3.53 3.53 0.00 6.01
536 544 1.942657 AGAAATCTAACGCGCATGCAT 59.057 42.857 19.57 0.00 42.97 3.96
537 545 2.355756 AGAAATCTAACGCGCATGCATT 59.644 40.909 19.57 11.06 42.97 3.56
609 675 4.402192 CGTGGAGGCACGTCATAG 57.598 61.111 0.00 0.00 42.91 2.23
611 677 0.525668 CGTGGAGGCACGTCATAGAC 60.526 60.000 0.00 0.00 42.91 2.59
612 678 0.530744 GTGGAGGCACGTCATAGACA 59.469 55.000 0.00 0.00 32.09 3.41
617 683 1.202582 AGGCACGTCATAGACAGTCAC 59.797 52.381 2.66 0.00 32.09 3.67
618 684 1.067846 GGCACGTCATAGACAGTCACA 60.068 52.381 2.66 0.00 32.09 3.58
620 686 2.607038 GCACGTCATAGACAGTCACACA 60.607 50.000 2.66 0.00 32.09 3.72
624 690 4.101235 CGTCATAGACAGTCACACAGATG 58.899 47.826 2.66 0.00 32.09 2.90
626 692 5.163754 CGTCATAGACAGTCACACAGATGTA 60.164 44.000 2.66 0.00 32.73 2.29
631 697 6.791887 AGACAGTCACACAGATGTAAATTG 57.208 37.500 2.66 0.00 36.72 2.32
660 726 2.355009 GCAACACGCAGCAAAGGG 60.355 61.111 0.00 0.00 41.79 3.95
661 727 2.844451 GCAACACGCAGCAAAGGGA 61.844 57.895 0.00 0.00 41.79 4.20
663 729 0.318107 CAACACGCAGCAAAGGGAAG 60.318 55.000 0.00 0.00 0.00 3.46
665 731 2.985847 ACGCAGCAAAGGGAAGGC 60.986 61.111 0.00 0.00 0.00 4.35
668 734 2.935740 GCAGCAAAGGGAAGGCCAC 61.936 63.158 5.01 0.00 35.15 5.01
669 735 1.531365 CAGCAAAGGGAAGGCCACA 60.531 57.895 5.01 0.00 35.15 4.17
670 736 1.531602 AGCAAAGGGAAGGCCACAC 60.532 57.895 5.01 0.00 35.15 3.82
672 738 1.228124 CAAAGGGAAGGCCACACGA 60.228 57.895 5.01 0.00 35.15 4.35
675 741 1.201429 AAGGGAAGGCCACACGATCT 61.201 55.000 5.01 0.00 35.15 2.75
676 742 1.153349 GGGAAGGCCACACGATCTC 60.153 63.158 5.01 0.00 35.15 2.75
677 743 1.596934 GGAAGGCCACACGATCTCA 59.403 57.895 5.01 0.00 0.00 3.27
765 860 3.723681 AGAGTCTCCTCTCCTCTCATCAT 59.276 47.826 0.00 0.00 45.08 2.45
770 865 3.295093 TCCTCTCCTCTCATCATCACAC 58.705 50.000 0.00 0.00 0.00 3.82
777 872 1.904537 TCTCATCATCACACCACAGCT 59.095 47.619 0.00 0.00 0.00 4.24
798 893 2.071688 CTGAGTCCACAGCACAGTAC 57.928 55.000 0.00 0.00 0.00 2.73
842 948 0.600255 ACTCAACGCAAAGTCCCTCG 60.600 55.000 0.00 0.00 0.00 4.63
870 976 1.725973 GCTTCCTTGCGTTGCGTTC 60.726 57.895 0.00 0.00 0.00 3.95
871 977 1.438710 CTTCCTTGCGTTGCGTTCG 60.439 57.895 0.00 0.00 0.00 3.95
872 978 2.101209 CTTCCTTGCGTTGCGTTCGT 62.101 55.000 0.00 0.00 0.00 3.85
873 979 2.096481 TTCCTTGCGTTGCGTTCGTC 62.096 55.000 0.00 0.00 0.00 4.20
878 984 4.675029 CGTTGCGTTCGTCCCCCT 62.675 66.667 0.00 0.00 0.00 4.79
879 985 2.741211 GTTGCGTTCGTCCCCCTC 60.741 66.667 0.00 0.00 0.00 4.30
880 986 3.235481 TTGCGTTCGTCCCCCTCA 61.235 61.111 0.00 0.00 0.00 3.86
882 988 1.259142 TTGCGTTCGTCCCCCTCATA 61.259 55.000 0.00 0.00 0.00 2.15
900 1006 0.637195 TACTCCTCCTCTTCCCCCTG 59.363 60.000 0.00 0.00 0.00 4.45
964 1133 1.955778 CACTGCACACCTCCATTTTCA 59.044 47.619 0.00 0.00 0.00 2.69
972 1141 4.074970 ACACCTCCATTTTCACAGATCAC 58.925 43.478 0.00 0.00 0.00 3.06
976 1145 5.191426 CCTCCATTTTCACAGATCACATCT 58.809 41.667 0.00 0.00 41.15 2.90
977 1146 5.296283 CCTCCATTTTCACAGATCACATCTC 59.704 44.000 0.00 0.00 37.58 2.75
979 1148 5.645067 TCCATTTTCACAGATCACATCTCAC 59.355 40.000 0.00 0.00 37.58 3.51
980 1149 5.646793 CCATTTTCACAGATCACATCTCACT 59.353 40.000 0.00 0.00 37.58 3.41
981 1150 6.150641 CCATTTTCACAGATCACATCTCACTT 59.849 38.462 0.00 0.00 37.58 3.16
982 1151 7.309012 CCATTTTCACAGATCACATCTCACTTT 60.309 37.037 0.00 0.00 37.58 2.66
983 1152 6.549912 TTTCACAGATCACATCTCACTTTG 57.450 37.500 0.00 0.00 37.58 2.77
984 1153 3.999001 TCACAGATCACATCTCACTTTGC 59.001 43.478 0.00 0.00 37.58 3.68
986 1155 3.008813 ACAGATCACATCTCACTTTGCCT 59.991 43.478 0.00 0.00 37.58 4.75
987 1156 4.008330 CAGATCACATCTCACTTTGCCTT 58.992 43.478 0.00 0.00 37.58 4.35
990 1159 1.884579 CACATCTCACTTTGCCTTGCT 59.115 47.619 0.00 0.00 0.00 3.91
991 1160 1.884579 ACATCTCACTTTGCCTTGCTG 59.115 47.619 0.00 0.00 0.00 4.41
992 1161 0.886563 ATCTCACTTTGCCTTGCTGC 59.113 50.000 0.00 0.00 0.00 5.25
1005 1194 0.323999 TTGCTGCAAGATCCATGGCT 60.324 50.000 11.69 0.00 34.07 4.75
1021 1210 1.194781 GGCTCCCTCACAGGAAGTCA 61.195 60.000 0.00 0.00 37.67 3.41
1068 1272 4.629523 GGCAACGGGACCAACGGA 62.630 66.667 0.00 0.00 35.23 4.69
1069 1273 2.592287 GCAACGGGACCAACGGAA 60.592 61.111 0.00 0.00 35.23 4.30
1113 1317 4.699522 AAGACCAAGACGCCGGCC 62.700 66.667 23.46 7.92 0.00 6.13
1358 1649 3.733960 CACCCTCTGCGACGACGA 61.734 66.667 12.29 0.00 42.66 4.20
1862 2223 1.580439 CTGATGTTGCGTCGTTTTCG 58.420 50.000 0.00 0.00 45.64 3.46
1876 2237 4.687483 GTCGTTTTCGTTTTCAGGGATCTA 59.313 41.667 0.00 0.00 44.46 1.98
1923 2287 2.091055 TGAGAAGGTAGGAGGAGGATGG 60.091 54.545 0.00 0.00 0.00 3.51
1949 2313 0.184451 ATGGATGGTGATCTGGTGCC 59.816 55.000 0.00 0.00 0.00 5.01
1968 2332 2.337532 CCTTGCCACTTGCTGCAC 59.662 61.111 0.00 0.00 42.00 4.57
1969 2333 2.337532 CTTGCCACTTGCTGCACC 59.662 61.111 0.00 0.00 42.00 5.01
1978 2343 0.110056 CTTGCTGCACCAACGATGTC 60.110 55.000 0.00 0.00 0.00 3.06
1984 2349 1.674611 GCACCAACGATGTCGACGAG 61.675 60.000 11.62 7.12 43.02 4.18
1987 2352 1.201647 ACCAACGATGTCGACGAGAAT 59.798 47.619 11.62 0.00 43.02 2.40
2062 2440 3.827008 TCAATGGAGCTACACCTCATC 57.173 47.619 0.00 0.00 33.47 2.92
2063 2441 3.378512 TCAATGGAGCTACACCTCATCT 58.621 45.455 0.00 0.00 33.47 2.90
2065 2443 4.962362 TCAATGGAGCTACACCTCATCTAA 59.038 41.667 0.00 0.00 33.47 2.10
2067 2445 5.957771 ATGGAGCTACACCTCATCTAAAA 57.042 39.130 0.00 0.00 33.47 1.52
2069 2447 4.530553 TGGAGCTACACCTCATCTAAAACA 59.469 41.667 0.00 0.00 33.47 2.83
2070 2448 5.112686 GGAGCTACACCTCATCTAAAACAG 58.887 45.833 0.00 0.00 33.47 3.16
2071 2449 5.091261 AGCTACACCTCATCTAAAACAGG 57.909 43.478 0.00 0.00 0.00 4.00
2094 2472 4.202070 GGATCAAGTCAGTAGTAGCCAGAC 60.202 50.000 0.00 0.00 0.00 3.51
2118 2497 4.293662 AGAAGTCACTCCTTTTCCATCC 57.706 45.455 0.00 0.00 0.00 3.51
2157 2536 3.413846 TCCTGGCTGAATATGAGATGC 57.586 47.619 0.00 0.00 0.00 3.91
2161 2540 1.811359 GGCTGAATATGAGATGCTGGC 59.189 52.381 0.00 0.00 0.00 4.85
2164 2543 3.506455 GCTGAATATGAGATGCTGGCATT 59.494 43.478 9.52 0.46 36.70 3.56
2165 2544 4.698780 GCTGAATATGAGATGCTGGCATTA 59.301 41.667 9.52 0.00 36.70 1.90
2166 2545 5.391736 GCTGAATATGAGATGCTGGCATTAC 60.392 44.000 9.52 7.53 36.70 1.89
2167 2546 5.872963 TGAATATGAGATGCTGGCATTACT 58.127 37.500 9.52 3.24 36.70 2.24
2168 2547 5.704053 TGAATATGAGATGCTGGCATTACTG 59.296 40.000 9.52 0.00 36.70 2.74
2169 2548 3.572632 ATGAGATGCTGGCATTACTGT 57.427 42.857 9.52 0.00 36.70 3.55
2170 2549 4.694760 ATGAGATGCTGGCATTACTGTA 57.305 40.909 9.52 0.00 36.70 2.74
2211 2591 9.884465 GCTAATATCTGCTGAATCGTTTATTTT 57.116 29.630 0.00 0.00 0.00 1.82
2224 2605 3.789224 CGTTTATTTTGTCGCATAAGCCC 59.211 43.478 0.00 0.00 37.52 5.19
2240 2621 1.021968 GCCCGGCACTAAATACTTGG 58.978 55.000 3.91 0.00 0.00 3.61
2251 2632 3.512219 AAATACTTGGGACCAACCGAA 57.488 42.857 0.00 0.00 40.11 4.30
2322 2703 7.420184 CAAAAATAAAAGTTTGCCCTACCAG 57.580 36.000 0.00 0.00 0.00 4.00
2323 2704 6.987403 AAAATAAAAGTTTGCCCTACCAGA 57.013 33.333 0.00 0.00 0.00 3.86
2324 2705 7.553504 AAAATAAAAGTTTGCCCTACCAGAT 57.446 32.000 0.00 0.00 0.00 2.90
2325 2706 8.658840 AAAATAAAAGTTTGCCCTACCAGATA 57.341 30.769 0.00 0.00 0.00 1.98
2326 2707 8.658840 AAATAAAAGTTTGCCCTACCAGATAA 57.341 30.769 0.00 0.00 0.00 1.75
2327 2708 7.881775 ATAAAAGTTTGCCCTACCAGATAAG 57.118 36.000 0.00 0.00 0.00 1.73
2328 2709 3.933861 AGTTTGCCCTACCAGATAAGG 57.066 47.619 0.00 0.00 0.00 2.69
2329 2710 3.190439 AGTTTGCCCTACCAGATAAGGT 58.810 45.455 0.00 0.00 45.72 3.50
2330 2711 4.368067 AGTTTGCCCTACCAGATAAGGTA 58.632 43.478 0.00 0.00 43.08 3.08
2331 2712 4.786454 AGTTTGCCCTACCAGATAAGGTAA 59.214 41.667 0.00 0.00 43.24 2.85
2332 2713 5.104485 AGTTTGCCCTACCAGATAAGGTAAG 60.104 44.000 0.00 0.00 43.24 2.34
2359 2771 3.145286 GCTCAGTGCTCTTTCCTTTTCT 58.855 45.455 0.00 0.00 38.95 2.52
2360 2772 3.567585 GCTCAGTGCTCTTTCCTTTTCTT 59.432 43.478 0.00 0.00 38.95 2.52
2370 2782 6.693113 GCTCTTTCCTTTTCTTGTTGTAAGTG 59.307 38.462 0.00 0.00 0.00 3.16
2371 2783 6.560711 TCTTTCCTTTTCTTGTTGTAAGTGC 58.439 36.000 0.00 0.00 0.00 4.40
2372 2784 5.906113 TTCCTTTTCTTGTTGTAAGTGCA 57.094 34.783 0.00 0.00 0.00 4.57
2373 2785 5.906113 TCCTTTTCTTGTTGTAAGTGCAA 57.094 34.783 0.00 0.00 0.00 4.08
2374 2786 6.274157 TCCTTTTCTTGTTGTAAGTGCAAA 57.726 33.333 0.00 0.00 0.00 3.68
2375 2787 6.329496 TCCTTTTCTTGTTGTAAGTGCAAAG 58.671 36.000 0.00 0.00 0.00 2.77
2376 2788 6.151985 TCCTTTTCTTGTTGTAAGTGCAAAGA 59.848 34.615 0.00 0.00 0.00 2.52
2377 2789 6.473455 CCTTTTCTTGTTGTAAGTGCAAAGAG 59.527 38.462 0.00 0.00 0.00 2.85
2378 2790 6.751514 TTTCTTGTTGTAAGTGCAAAGAGA 57.248 33.333 0.00 0.00 0.00 3.10
2379 2791 6.751514 TTCTTGTTGTAAGTGCAAAGAGAA 57.248 33.333 0.00 5.12 33.32 2.87
2380 2792 6.751514 TCTTGTTGTAAGTGCAAAGAGAAA 57.248 33.333 0.00 0.00 0.00 2.52
2381 2793 6.785191 TCTTGTTGTAAGTGCAAAGAGAAAG 58.215 36.000 0.00 0.00 0.00 2.62
2382 2794 5.499139 TGTTGTAAGTGCAAAGAGAAAGG 57.501 39.130 0.00 0.00 0.00 3.11
2383 2795 4.947388 TGTTGTAAGTGCAAAGAGAAAGGT 59.053 37.500 0.00 0.00 0.00 3.50
2384 2796 5.163663 TGTTGTAAGTGCAAAGAGAAAGGTG 60.164 40.000 0.00 0.00 0.00 4.00
2385 2797 4.523083 TGTAAGTGCAAAGAGAAAGGTGT 58.477 39.130 0.00 0.00 0.00 4.16
2386 2798 5.676552 TGTAAGTGCAAAGAGAAAGGTGTA 58.323 37.500 0.00 0.00 0.00 2.90
2387 2799 6.116806 TGTAAGTGCAAAGAGAAAGGTGTAA 58.883 36.000 0.00 0.00 0.00 2.41
2388 2800 5.500645 AAGTGCAAAGAGAAAGGTGTAAC 57.499 39.130 0.00 0.00 0.00 2.50
2389 2801 4.523083 AGTGCAAAGAGAAAGGTGTAACA 58.477 39.130 0.00 0.00 39.98 2.41
2390 2802 4.576463 AGTGCAAAGAGAAAGGTGTAACAG 59.424 41.667 0.00 0.00 39.98 3.16
2391 2803 3.315191 TGCAAAGAGAAAGGTGTAACAGC 59.685 43.478 0.00 0.00 39.98 4.40
2392 2804 3.315191 GCAAAGAGAAAGGTGTAACAGCA 59.685 43.478 0.00 0.00 39.98 4.41
2393 2805 4.789802 GCAAAGAGAAAGGTGTAACAGCAC 60.790 45.833 0.00 0.00 39.98 4.40
2399 2811 2.428622 GTGTAACAGCACCCGGGT 59.571 61.111 24.16 24.16 36.32 5.28
2408 2820 3.000819 CACCCGGGTGCCTCTACA 61.001 66.667 39.44 0.00 39.39 2.74
2409 2821 3.001406 ACCCGGGTGCCTCTACAC 61.001 66.667 29.69 0.00 39.94 2.90
2418 2830 3.906720 GTGCCTCTACACCCTCATAAA 57.093 47.619 0.00 0.00 34.35 1.40
2419 2831 3.532542 GTGCCTCTACACCCTCATAAAC 58.467 50.000 0.00 0.00 34.35 2.01
2420 2832 3.055385 GTGCCTCTACACCCTCATAAACA 60.055 47.826 0.00 0.00 34.35 2.83
2421 2833 3.197766 TGCCTCTACACCCTCATAAACAG 59.802 47.826 0.00 0.00 0.00 3.16
2422 2834 3.197983 GCCTCTACACCCTCATAAACAGT 59.802 47.826 0.00 0.00 0.00 3.55
2423 2835 4.404715 GCCTCTACACCCTCATAAACAGTA 59.595 45.833 0.00 0.00 0.00 2.74
2424 2836 5.681695 GCCTCTACACCCTCATAAACAGTAC 60.682 48.000 0.00 0.00 0.00 2.73
2425 2837 5.421056 CCTCTACACCCTCATAAACAGTACA 59.579 44.000 0.00 0.00 0.00 2.90
2426 2838 6.098409 CCTCTACACCCTCATAAACAGTACAT 59.902 42.308 0.00 0.00 0.00 2.29
2427 2839 7.364762 CCTCTACACCCTCATAAACAGTACATT 60.365 40.741 0.00 0.00 0.00 2.71
2428 2840 7.553334 TCTACACCCTCATAAACAGTACATTC 58.447 38.462 0.00 0.00 0.00 2.67
2429 2841 5.175859 ACACCCTCATAAACAGTACATTCG 58.824 41.667 0.00 0.00 0.00 3.34
2430 2842 5.175859 CACCCTCATAAACAGTACATTCGT 58.824 41.667 0.00 0.00 0.00 3.85
2431 2843 5.063438 CACCCTCATAAACAGTACATTCGTG 59.937 44.000 0.00 0.00 0.00 4.35
2432 2844 5.046878 ACCCTCATAAACAGTACATTCGTGA 60.047 40.000 0.00 0.00 0.00 4.35
2433 2845 5.872617 CCCTCATAAACAGTACATTCGTGAA 59.127 40.000 0.00 0.00 0.00 3.18
2434 2846 6.370442 CCCTCATAAACAGTACATTCGTGAAA 59.630 38.462 0.00 0.00 0.00 2.69
2435 2847 7.094975 CCCTCATAAACAGTACATTCGTGAAAA 60.095 37.037 0.00 0.00 0.00 2.29
2436 2848 8.286800 CCTCATAAACAGTACATTCGTGAAAAA 58.713 33.333 0.00 0.00 0.00 1.94
2437 2849 9.825972 CTCATAAACAGTACATTCGTGAAAAAT 57.174 29.630 0.00 0.00 0.00 1.82
2441 2853 8.918961 AAACAGTACATTCGTGAAAAATTGAA 57.081 26.923 0.00 0.00 0.00 2.69
2442 2854 8.918961 AACAGTACATTCGTGAAAAATTGAAA 57.081 26.923 0.00 0.00 0.00 2.69
2443 2855 8.918961 ACAGTACATTCGTGAAAAATTGAAAA 57.081 26.923 0.00 0.00 0.00 2.29
2444 2856 9.360093 ACAGTACATTCGTGAAAAATTGAAAAA 57.640 25.926 0.00 0.00 0.00 1.94
2475 2887 8.506140 TGAAACTTTCAGCGATAAAAGATTTG 57.494 30.769 2.70 0.00 34.08 2.32
2476 2888 8.349245 TGAAACTTTCAGCGATAAAAGATTTGA 58.651 29.630 2.70 0.00 34.08 2.69
2477 2889 9.346725 GAAACTTTCAGCGATAAAAGATTTGAT 57.653 29.630 2.70 0.00 0.00 2.57
2478 2890 8.679288 AACTTTCAGCGATAAAAGATTTGATG 57.321 30.769 2.70 0.00 0.00 3.07
2479 2891 7.820648 ACTTTCAGCGATAAAAGATTTGATGT 58.179 30.769 2.70 0.00 0.00 3.06
2480 2892 8.299570 ACTTTCAGCGATAAAAGATTTGATGTT 58.700 29.630 2.70 0.00 0.00 2.71
2481 2893 8.673626 TTTCAGCGATAAAAGATTTGATGTTC 57.326 30.769 0.00 0.00 0.00 3.18
2482 2894 7.615582 TCAGCGATAAAAGATTTGATGTTCT 57.384 32.000 0.00 0.00 0.00 3.01
2483 2895 8.044060 TCAGCGATAAAAGATTTGATGTTCTT 57.956 30.769 0.00 0.00 33.69 2.52
2484 2896 7.964559 TCAGCGATAAAAGATTTGATGTTCTTG 59.035 33.333 0.00 0.00 32.65 3.02
2485 2897 6.749118 AGCGATAAAAGATTTGATGTTCTTGC 59.251 34.615 0.00 0.00 32.65 4.01
2486 2898 6.527722 GCGATAAAAGATTTGATGTTCTTGCA 59.472 34.615 0.00 0.00 32.65 4.08
2487 2899 7.062138 GCGATAAAAGATTTGATGTTCTTGCAA 59.938 33.333 0.00 0.00 32.65 4.08
2488 2900 8.914654 CGATAAAAGATTTGATGTTCTTGCAAA 58.085 29.630 0.00 0.00 36.15 3.68
2490 2902 9.768662 ATAAAAGATTTGATGTTCTTGCAAAGT 57.231 25.926 0.00 0.00 46.34 2.66
2491 2903 8.496707 AAAAGATTTGATGTTCTTGCAAAGTT 57.503 26.923 0.00 0.00 46.34 2.66
2492 2904 8.496707 AAAGATTTGATGTTCTTGCAAAGTTT 57.503 26.923 0.00 0.00 46.34 2.66
2493 2905 7.704789 AGATTTGATGTTCTTGCAAAGTTTC 57.295 32.000 0.00 0.00 46.34 2.78
2494 2906 7.267128 AGATTTGATGTTCTTGCAAAGTTTCA 58.733 30.769 0.00 0.00 46.34 2.69
2495 2907 6.890663 TTTGATGTTCTTGCAAAGTTTCAG 57.109 33.333 0.00 0.00 46.34 3.02
2496 2908 4.935702 TGATGTTCTTGCAAAGTTTCAGG 58.064 39.130 0.00 0.00 46.34 3.86
2497 2909 4.644234 TGATGTTCTTGCAAAGTTTCAGGA 59.356 37.500 0.00 0.00 46.34 3.86
2498 2910 5.126869 TGATGTTCTTGCAAAGTTTCAGGAA 59.873 36.000 0.00 0.00 46.34 3.36
2499 2911 4.743493 TGTTCTTGCAAAGTTTCAGGAAC 58.257 39.130 22.01 22.01 46.34 3.62
2500 2912 4.743493 GTTCTTGCAAAGTTTCAGGAACA 58.257 39.130 22.90 4.28 46.34 3.18
2501 2913 5.167845 GTTCTTGCAAAGTTTCAGGAACAA 58.832 37.500 22.90 8.28 46.34 2.83
2502 2914 5.398603 TCTTGCAAAGTTTCAGGAACAAA 57.601 34.783 0.00 0.00 46.34 2.83
2503 2915 5.976458 TCTTGCAAAGTTTCAGGAACAAAT 58.024 33.333 0.00 0.00 46.34 2.32
2504 2916 7.106439 TCTTGCAAAGTTTCAGGAACAAATA 57.894 32.000 0.00 0.00 46.34 1.40
2505 2917 7.551585 TCTTGCAAAGTTTCAGGAACAAATAA 58.448 30.769 0.00 0.00 46.34 1.40
2506 2918 7.491048 TCTTGCAAAGTTTCAGGAACAAATAAC 59.509 33.333 0.00 0.00 46.34 1.89
2507 2919 6.045955 TGCAAAGTTTCAGGAACAAATAACC 58.954 36.000 0.00 0.00 40.84 2.85
2508 2920 6.127196 TGCAAAGTTTCAGGAACAAATAACCT 60.127 34.615 0.00 0.00 40.84 3.50
2509 2921 6.761242 GCAAAGTTTCAGGAACAAATAACCTT 59.239 34.615 0.00 0.00 40.84 3.50
2510 2922 7.042725 GCAAAGTTTCAGGAACAAATAACCTTC 60.043 37.037 0.00 0.00 40.84 3.46
2511 2923 6.313744 AGTTTCAGGAACAAATAACCTTCG 57.686 37.500 0.00 0.00 40.84 3.79
2512 2924 5.826208 AGTTTCAGGAACAAATAACCTTCGT 59.174 36.000 0.00 0.00 40.84 3.85
2513 2925 5.682943 TTCAGGAACAAATAACCTTCGTG 57.317 39.130 0.00 0.00 33.20 4.35
2514 2926 4.069304 TCAGGAACAAATAACCTTCGTGG 58.931 43.478 0.00 0.00 42.93 4.94
2515 2927 4.069304 CAGGAACAAATAACCTTCGTGGA 58.931 43.478 4.38 0.00 39.71 4.02
2516 2928 4.154195 CAGGAACAAATAACCTTCGTGGAG 59.846 45.833 4.38 0.00 39.71 3.86
2517 2929 3.119955 GGAACAAATAACCTTCGTGGAGC 60.120 47.826 4.38 0.00 39.71 4.70
2518 2930 2.433436 ACAAATAACCTTCGTGGAGCC 58.567 47.619 4.38 0.00 39.71 4.70
2519 2931 1.743394 CAAATAACCTTCGTGGAGCCC 59.257 52.381 4.38 0.00 39.71 5.19
2520 2932 1.286248 AATAACCTTCGTGGAGCCCT 58.714 50.000 4.38 0.00 39.71 5.19
2521 2933 0.831307 ATAACCTTCGTGGAGCCCTC 59.169 55.000 4.38 0.00 39.71 4.30
2522 2934 0.543410 TAACCTTCGTGGAGCCCTCA 60.543 55.000 4.38 0.00 39.71 3.86
2523 2935 2.113243 AACCTTCGTGGAGCCCTCAC 62.113 60.000 4.38 0.00 39.71 3.51
2524 2936 2.583441 CCTTCGTGGAGCCCTCACA 61.583 63.158 0.00 0.00 38.35 3.58
2525 2937 1.371183 CTTCGTGGAGCCCTCACAA 59.629 57.895 0.00 0.00 35.03 3.33
2526 2938 0.250295 CTTCGTGGAGCCCTCACAAA 60.250 55.000 0.00 0.00 35.03 2.83
2527 2939 0.181587 TTCGTGGAGCCCTCACAAAA 59.818 50.000 0.00 0.00 35.03 2.44
2528 2940 0.181587 TCGTGGAGCCCTCACAAAAA 59.818 50.000 0.00 0.00 35.03 1.94
2552 2964 7.671495 AAAAACAAATTCACTGCTCAAAAGT 57.329 28.000 0.00 0.00 0.00 2.66
2553 2965 6.651755 AAACAAATTCACTGCTCAAAAGTG 57.348 33.333 0.00 0.00 45.26 3.16
2554 2966 5.329035 ACAAATTCACTGCTCAAAAGTGT 57.671 34.783 3.70 0.00 44.42 3.55
2555 2967 6.449635 ACAAATTCACTGCTCAAAAGTGTA 57.550 33.333 3.70 0.00 44.42 2.90
2556 2968 6.265577 ACAAATTCACTGCTCAAAAGTGTAC 58.734 36.000 3.70 0.00 44.42 2.90
2557 2969 6.127758 ACAAATTCACTGCTCAAAAGTGTACA 60.128 34.615 0.00 0.00 44.42 2.90
2558 2970 6.639632 AATTCACTGCTCAAAAGTGTACAT 57.360 33.333 0.00 0.00 44.42 2.29
2559 2971 7.744087 AATTCACTGCTCAAAAGTGTACATA 57.256 32.000 0.00 0.00 44.42 2.29
2560 2972 7.744087 ATTCACTGCTCAAAAGTGTACATAA 57.256 32.000 0.00 0.00 44.42 1.90
2561 2973 7.561021 TTCACTGCTCAAAAGTGTACATAAA 57.439 32.000 0.00 0.00 44.42 1.40
2562 2974 6.954944 TCACTGCTCAAAAGTGTACATAAAC 58.045 36.000 0.00 0.00 44.42 2.01
2563 2975 6.765989 TCACTGCTCAAAAGTGTACATAAACT 59.234 34.615 0.00 0.00 44.42 2.66
2564 2976 7.282224 TCACTGCTCAAAAGTGTACATAAACTT 59.718 33.333 0.00 0.00 44.42 2.66
2565 2977 7.915397 CACTGCTCAAAAGTGTACATAAACTTT 59.085 33.333 0.00 0.80 46.03 2.66
2566 2978 7.915397 ACTGCTCAAAAGTGTACATAAACTTTG 59.085 33.333 7.78 9.56 43.92 2.77
2567 2979 7.990917 TGCTCAAAAGTGTACATAAACTTTGA 58.009 30.769 7.78 12.35 43.92 2.69
2568 2980 8.462811 TGCTCAAAAGTGTACATAAACTTTGAA 58.537 29.630 7.78 0.42 43.92 2.69
2569 2981 9.463443 GCTCAAAAGTGTACATAAACTTTGAAT 57.537 29.630 7.78 0.00 43.92 2.57
2590 3002 9.995003 TTGAATATTGATTTTGCTTGTTTAGGT 57.005 25.926 0.00 0.00 0.00 3.08
2591 3003 9.421806 TGAATATTGATTTTGCTTGTTTAGGTG 57.578 29.630 0.00 0.00 0.00 4.00
2592 3004 9.638239 GAATATTGATTTTGCTTGTTTAGGTGA 57.362 29.630 0.00 0.00 0.00 4.02
2593 3005 9.643693 AATATTGATTTTGCTTGTTTAGGTGAG 57.356 29.630 0.00 0.00 0.00 3.51
2594 3006 5.452078 TGATTTTGCTTGTTTAGGTGAGG 57.548 39.130 0.00 0.00 0.00 3.86
2595 3007 4.280677 TGATTTTGCTTGTTTAGGTGAGGG 59.719 41.667 0.00 0.00 0.00 4.30
2596 3008 1.616159 TTGCTTGTTTAGGTGAGGGC 58.384 50.000 0.00 0.00 0.00 5.19
2597 3009 0.771127 TGCTTGTTTAGGTGAGGGCT 59.229 50.000 0.00 0.00 0.00 5.19
2598 3010 1.271379 TGCTTGTTTAGGTGAGGGCTC 60.271 52.381 0.00 0.00 0.00 4.70
2599 3011 1.950954 GCTTGTTTAGGTGAGGGCTCC 60.951 57.143 0.00 0.00 0.00 4.70
2600 3012 0.696501 TTGTTTAGGTGAGGGCTCCC 59.303 55.000 0.00 0.00 0.00 4.30
2601 3013 1.205460 TGTTTAGGTGAGGGCTCCCC 61.205 60.000 0.32 0.00 45.90 4.81
2614 3026 4.568072 GGGCTCCCCATTTGTTATTTTT 57.432 40.909 0.00 0.00 44.65 1.94
2615 3027 5.685520 GGGCTCCCCATTTGTTATTTTTA 57.314 39.130 0.00 0.00 44.65 1.52
2616 3028 6.056090 GGGCTCCCCATTTGTTATTTTTAA 57.944 37.500 0.00 0.00 44.65 1.52
2617 3029 5.878116 GGGCTCCCCATTTGTTATTTTTAAC 59.122 40.000 0.00 0.00 44.65 2.01
2618 3030 6.296202 GGGCTCCCCATTTGTTATTTTTAACT 60.296 38.462 0.00 0.00 44.65 2.24
2619 3031 6.593770 GGCTCCCCATTTGTTATTTTTAACTG 59.406 38.462 0.00 0.00 0.00 3.16
2620 3032 7.382898 GCTCCCCATTTGTTATTTTTAACTGA 58.617 34.615 0.00 0.00 0.00 3.41
2621 3033 7.875554 GCTCCCCATTTGTTATTTTTAACTGAA 59.124 33.333 0.00 0.00 0.00 3.02
2622 3034 9.771534 CTCCCCATTTGTTATTTTTAACTGAAA 57.228 29.630 0.00 0.00 0.00 2.69
2623 3035 9.549078 TCCCCATTTGTTATTTTTAACTGAAAC 57.451 29.630 0.00 0.00 0.00 2.78
2624 3036 9.554395 CCCCATTTGTTATTTTTAACTGAAACT 57.446 29.630 0.00 0.00 0.00 2.66
2635 3047 8.994429 TTTTTAACTGAAACTTTGCAAGATCA 57.006 26.923 0.00 2.57 0.00 2.92
2636 3048 9.598517 TTTTTAACTGAAACTTTGCAAGATCAT 57.401 25.926 0.00 0.00 31.31 2.45
2637 3049 8.801715 TTTAACTGAAACTTTGCAAGATCATC 57.198 30.769 0.00 0.00 31.31 2.92
2638 3050 5.039480 ACTGAAACTTTGCAAGATCATCG 57.961 39.130 0.00 0.00 31.31 3.84
2639 3051 4.756642 ACTGAAACTTTGCAAGATCATCGA 59.243 37.500 0.00 0.00 31.31 3.59
2640 3052 5.239306 ACTGAAACTTTGCAAGATCATCGAA 59.761 36.000 0.00 0.00 31.31 3.71
2641 3053 6.070897 TGAAACTTTGCAAGATCATCGAAA 57.929 33.333 0.00 0.00 0.00 3.46
2642 3054 6.144854 TGAAACTTTGCAAGATCATCGAAAG 58.855 36.000 0.00 0.94 0.00 2.62
2643 3055 5.695851 AACTTTGCAAGATCATCGAAAGT 57.304 34.783 0.00 1.56 35.65 2.66
2644 3056 5.695851 ACTTTGCAAGATCATCGAAAGTT 57.304 34.783 0.00 0.00 31.26 2.66
2645 3057 6.076981 ACTTTGCAAGATCATCGAAAGTTT 57.923 33.333 0.00 0.00 31.26 2.66
2646 3058 5.916883 ACTTTGCAAGATCATCGAAAGTTTG 59.083 36.000 0.00 0.00 31.26 2.93
2647 3059 5.687770 TTGCAAGATCATCGAAAGTTTGA 57.312 34.783 0.00 0.00 0.00 2.69
2648 3060 5.885230 TGCAAGATCATCGAAAGTTTGAT 57.115 34.783 0.00 0.00 37.60 2.57
2649 3061 5.872635 TGCAAGATCATCGAAAGTTTGATC 58.127 37.500 15.14 15.14 44.47 2.92
2656 3068 8.154868 GATCATCGAAAGTTTGATCTTGTTTG 57.845 34.615 15.51 0.00 42.73 2.93
2657 3069 7.258022 TCATCGAAAGTTTGATCTTGTTTGA 57.742 32.000 0.00 0.00 0.00 2.69
2658 3070 7.874940 TCATCGAAAGTTTGATCTTGTTTGAT 58.125 30.769 0.00 0.00 0.00 2.57
2659 3071 7.804600 TCATCGAAAGTTTGATCTTGTTTGATG 59.195 33.333 0.00 13.54 31.54 3.07
2660 3072 7.026631 TCGAAAGTTTGATCTTGTTTGATGT 57.973 32.000 0.00 0.00 0.00 3.06
2661 3073 7.132213 TCGAAAGTTTGATCTTGTTTGATGTC 58.868 34.615 0.00 0.00 0.00 3.06
2662 3074 6.360681 CGAAAGTTTGATCTTGTTTGATGTCC 59.639 38.462 0.00 0.00 0.00 4.02
2663 3075 5.362556 AGTTTGATCTTGTTTGATGTCCG 57.637 39.130 0.00 0.00 0.00 4.79
2664 3076 5.063204 AGTTTGATCTTGTTTGATGTCCGA 58.937 37.500 0.00 0.00 0.00 4.55
2665 3077 5.530915 AGTTTGATCTTGTTTGATGTCCGAA 59.469 36.000 0.00 0.00 0.00 4.30
2666 3078 6.039270 AGTTTGATCTTGTTTGATGTCCGAAA 59.961 34.615 0.00 0.00 0.00 3.46
2667 3079 5.611796 TGATCTTGTTTGATGTCCGAAAG 57.388 39.130 0.00 0.00 0.00 2.62
2668 3080 5.063204 TGATCTTGTTTGATGTCCGAAAGT 58.937 37.500 0.00 0.00 0.00 2.66
2669 3081 5.530915 TGATCTTGTTTGATGTCCGAAAGTT 59.469 36.000 0.00 0.00 0.00 2.66
2670 3082 5.828299 TCTTGTTTGATGTCCGAAAGTTT 57.172 34.783 0.00 0.00 0.00 2.66
2671 3083 5.816919 TCTTGTTTGATGTCCGAAAGTTTC 58.183 37.500 5.47 5.47 0.00 2.78
2730 3142 9.930693 GAATTTACTATTCATAGAGGGTGTAGG 57.069 37.037 0.63 0.00 34.50 3.18
2731 3143 7.850935 TTTACTATTCATAGAGGGTGTAGGG 57.149 40.000 0.63 0.00 34.50 3.53
2732 3144 4.753186 ACTATTCATAGAGGGTGTAGGGG 58.247 47.826 0.63 0.00 34.50 4.79
2733 3145 1.802553 TTCATAGAGGGTGTAGGGGC 58.197 55.000 0.00 0.00 0.00 5.80
2734 3146 0.639943 TCATAGAGGGTGTAGGGGCA 59.360 55.000 0.00 0.00 0.00 5.36
2735 3147 0.759346 CATAGAGGGTGTAGGGGCAC 59.241 60.000 0.00 0.00 38.56 5.01
2751 3163 3.116091 CACCAGGGTGCTGAAAACT 57.884 52.632 5.38 0.00 39.39 2.66
2752 3164 0.954452 CACCAGGGTGCTGAAAACTC 59.046 55.000 5.38 0.00 39.39 3.01
2753 3165 0.846693 ACCAGGGTGCTGAAAACTCT 59.153 50.000 0.00 0.00 0.00 3.24
2754 3166 1.242076 CCAGGGTGCTGAAAACTCTG 58.758 55.000 0.00 0.00 44.35 3.35
2755 3167 1.477558 CCAGGGTGCTGAAAACTCTGT 60.478 52.381 2.99 0.00 43.42 3.41
2756 3168 1.876156 CAGGGTGCTGAAAACTCTGTC 59.124 52.381 0.00 0.00 40.61 3.51
2757 3169 1.771255 AGGGTGCTGAAAACTCTGTCT 59.229 47.619 0.00 0.00 0.00 3.41
2758 3170 2.147150 GGGTGCTGAAAACTCTGTCTC 58.853 52.381 0.00 0.00 0.00 3.36
2759 3171 2.485479 GGGTGCTGAAAACTCTGTCTCA 60.485 50.000 0.00 0.00 0.00 3.27
2760 3172 3.206150 GGTGCTGAAAACTCTGTCTCAA 58.794 45.455 0.00 0.00 0.00 3.02
2818 3230 5.409643 AGCGAAGTAACATACATCAATGC 57.590 39.130 0.00 0.00 0.00 3.56
2853 3265 4.248859 GCTATCTGTTGAGTGATGTGTGT 58.751 43.478 0.00 0.00 0.00 3.72
2860 3272 6.095300 TCTGTTGAGTGATGTGTGTCATTTTT 59.905 34.615 0.00 0.00 36.83 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.025401 CAGCGAACGCCAACCACC 62.025 66.667 15.44 0.00 43.17 4.61
1 2 4.025401 CCAGCGAACGCCAACCAC 62.025 66.667 15.44 0.00 43.17 4.16
4 5 4.090057 GAGCCAGCGAACGCCAAC 62.090 66.667 15.44 5.34 43.17 3.77
5 6 4.617520 TGAGCCAGCGAACGCCAA 62.618 61.111 15.44 0.00 43.17 4.52
31 32 9.844257 AATCAACAATCAAACCTATTGGAAAAA 57.156 25.926 0.00 0.00 38.41 1.94
32 33 9.487790 GAATCAACAATCAAACCTATTGGAAAA 57.512 29.630 0.00 0.00 38.41 2.29
33 34 8.646004 TGAATCAACAATCAAACCTATTGGAAA 58.354 29.630 0.00 0.00 38.41 3.13
34 35 8.187913 TGAATCAACAATCAAACCTATTGGAA 57.812 30.769 0.00 0.00 38.41 3.53
35 36 7.773489 TGAATCAACAATCAAACCTATTGGA 57.227 32.000 0.00 0.00 38.41 3.53
60 61 9.581099 GGTCCGTGTGATTTAATTTAAATTGAT 57.419 29.630 21.19 14.97 38.42 2.57
61 62 7.751348 CGGTCCGTGTGATTTAATTTAAATTGA 59.249 33.333 21.19 11.94 38.42 2.57
62 63 7.539366 ACGGTCCGTGTGATTTAATTTAAATTG 59.461 33.333 18.08 3.49 39.18 2.32
63 64 7.595604 ACGGTCCGTGTGATTTAATTTAAATT 58.404 30.769 18.08 17.18 39.18 1.82
64 65 7.148355 ACGGTCCGTGTGATTTAATTTAAAT 57.852 32.000 18.08 12.99 39.18 1.40
65 66 6.557291 ACGGTCCGTGTGATTTAATTTAAA 57.443 33.333 18.08 4.16 39.18 1.52
80 81 1.863662 CTACTGTCAGCACGGTCCGT 61.864 60.000 12.23 12.23 41.59 4.69
81 82 1.154016 CTACTGTCAGCACGGTCCG 60.154 63.158 10.48 10.48 41.59 4.79
82 83 0.388649 CACTACTGTCAGCACGGTCC 60.389 60.000 0.00 0.00 41.59 4.46
83 84 1.009389 GCACTACTGTCAGCACGGTC 61.009 60.000 0.00 0.00 41.59 4.79
84 85 1.006102 GCACTACTGTCAGCACGGT 60.006 57.895 0.00 0.00 44.84 4.83
85 86 0.599991 TTGCACTACTGTCAGCACGG 60.600 55.000 0.00 0.00 36.62 4.94
86 87 0.508641 GTTGCACTACTGTCAGCACG 59.491 55.000 0.00 0.00 36.62 5.34
87 88 1.528586 CTGTTGCACTACTGTCAGCAC 59.471 52.381 0.00 0.31 36.62 4.40
88 89 1.412343 TCTGTTGCACTACTGTCAGCA 59.588 47.619 0.00 0.00 34.79 4.41
89 90 2.154854 TCTGTTGCACTACTGTCAGC 57.845 50.000 0.00 0.00 0.00 4.26
90 91 3.982475 TCTTCTGTTGCACTACTGTCAG 58.018 45.455 0.00 0.00 0.00 3.51
91 92 3.636764 TCTCTTCTGTTGCACTACTGTCA 59.363 43.478 0.00 0.00 0.00 3.58
92 93 4.244425 TCTCTTCTGTTGCACTACTGTC 57.756 45.455 0.00 0.00 0.00 3.51
93 94 4.502259 CCTTCTCTTCTGTTGCACTACTGT 60.502 45.833 0.00 0.00 0.00 3.55
94 95 3.993081 CCTTCTCTTCTGTTGCACTACTG 59.007 47.826 0.00 0.00 0.00 2.74
95 96 3.007398 CCCTTCTCTTCTGTTGCACTACT 59.993 47.826 0.00 0.00 0.00 2.57
96 97 3.006967 TCCCTTCTCTTCTGTTGCACTAC 59.993 47.826 0.00 0.00 0.00 2.73
97 98 3.239449 TCCCTTCTCTTCTGTTGCACTA 58.761 45.455 0.00 0.00 0.00 2.74
98 99 2.050144 TCCCTTCTCTTCTGTTGCACT 58.950 47.619 0.00 0.00 0.00 4.40
99 100 2.550830 TCCCTTCTCTTCTGTTGCAC 57.449 50.000 0.00 0.00 0.00 4.57
100 101 2.224621 CCTTCCCTTCTCTTCTGTTGCA 60.225 50.000 0.00 0.00 0.00 4.08
101 102 2.431454 CCTTCCCTTCTCTTCTGTTGC 58.569 52.381 0.00 0.00 0.00 4.17
111 112 2.203938 TCGGTGGCCTTCCCTTCT 60.204 61.111 3.32 0.00 0.00 2.85
135 136 2.768492 CGCCTGCCTCTGCCATTTC 61.768 63.158 0.00 0.00 36.33 2.17
141 142 4.385405 ACTGTCGCCTGCCTCTGC 62.385 66.667 0.00 0.00 38.26 4.26
142 143 2.433838 CACTGTCGCCTGCCTCTG 60.434 66.667 0.00 0.00 0.00 3.35
143 144 3.699894 CCACTGTCGCCTGCCTCT 61.700 66.667 0.00 0.00 0.00 3.69
144 145 3.655810 CTCCACTGTCGCCTGCCTC 62.656 68.421 0.00 0.00 0.00 4.70
145 146 3.699894 CTCCACTGTCGCCTGCCT 61.700 66.667 0.00 0.00 0.00 4.75
199 203 4.260985 TGTATTTCACGCCATTCATCAGT 58.739 39.130 0.00 0.00 0.00 3.41
204 212 3.270027 CCTCTGTATTTCACGCCATTCA 58.730 45.455 0.00 0.00 0.00 2.57
226 234 2.951642 AGTTGGTTGATGTGGTTCTGTG 59.048 45.455 0.00 0.00 0.00 3.66
265 273 7.756614 ACAGAGGGAGTATGTATGAGTATGTA 58.243 38.462 0.00 0.00 0.00 2.29
266 274 6.615617 ACAGAGGGAGTATGTATGAGTATGT 58.384 40.000 0.00 0.00 0.00 2.29
267 275 7.531857 AACAGAGGGAGTATGTATGAGTATG 57.468 40.000 0.00 0.00 27.65 2.39
269 277 7.002879 GGTAACAGAGGGAGTATGTATGAGTA 58.997 42.308 0.00 0.00 27.65 2.59
270 278 5.834204 GGTAACAGAGGGAGTATGTATGAGT 59.166 44.000 0.00 0.00 27.65 3.41
271 279 6.071984 AGGTAACAGAGGGAGTATGTATGAG 58.928 44.000 0.00 0.00 41.41 2.90
272 280 6.027025 AGGTAACAGAGGGAGTATGTATGA 57.973 41.667 0.00 0.00 41.41 2.15
273 281 7.834881 TTAGGTAACAGAGGGAGTATGTATG 57.165 40.000 0.00 0.00 41.41 2.39
279 287 9.804977 GTCTTATATTAGGTAACAGAGGGAGTA 57.195 37.037 0.00 0.00 41.41 2.59
280 288 8.287350 TGTCTTATATTAGGTAACAGAGGGAGT 58.713 37.037 0.00 0.00 41.41 3.85
281 289 8.707796 TGTCTTATATTAGGTAACAGAGGGAG 57.292 38.462 0.00 0.00 41.41 4.30
282 290 9.670442 AATGTCTTATATTAGGTAACAGAGGGA 57.330 33.333 0.00 0.00 41.41 4.20
375 383 9.944376 ACATTTTAGTATGTATGTTCACTCACT 57.056 29.630 0.00 0.00 36.99 3.41
376 384 9.973246 CACATTTTAGTATGTATGTTCACTCAC 57.027 33.333 0.00 0.00 36.64 3.51
377 385 9.719355 ACACATTTTAGTATGTATGTTCACTCA 57.281 29.630 0.00 0.00 36.64 3.41
379 387 9.944376 AGACACATTTTAGTATGTATGTTCACT 57.056 29.630 0.00 0.00 36.64 3.41
414 422 8.786898 GGACCTTTTAGTTTTTCCTTAATACGT 58.213 33.333 0.00 0.00 0.00 3.57
415 423 9.006839 AGGACCTTTTAGTTTTTCCTTAATACG 57.993 33.333 0.00 0.00 28.60 3.06
440 448 6.015688 TGTGCCTCCTACGTTTCCTAATATAG 60.016 42.308 0.00 0.00 0.00 1.31
441 449 5.834742 TGTGCCTCCTACGTTTCCTAATATA 59.165 40.000 0.00 0.00 0.00 0.86
442 450 4.652421 TGTGCCTCCTACGTTTCCTAATAT 59.348 41.667 0.00 0.00 0.00 1.28
443 451 4.025360 TGTGCCTCCTACGTTTCCTAATA 58.975 43.478 0.00 0.00 0.00 0.98
444 452 2.835764 TGTGCCTCCTACGTTTCCTAAT 59.164 45.455 0.00 0.00 0.00 1.73
445 453 2.250031 TGTGCCTCCTACGTTTCCTAA 58.750 47.619 0.00 0.00 0.00 2.69
446 454 1.927487 TGTGCCTCCTACGTTTCCTA 58.073 50.000 0.00 0.00 0.00 2.94
447 455 1.276622 ATGTGCCTCCTACGTTTCCT 58.723 50.000 0.00 0.00 0.00 3.36
448 456 2.093869 TGTATGTGCCTCCTACGTTTCC 60.094 50.000 0.00 0.00 0.00 3.13
449 457 3.241067 TGTATGTGCCTCCTACGTTTC 57.759 47.619 0.00 0.00 0.00 2.78
450 458 3.906720 ATGTATGTGCCTCCTACGTTT 57.093 42.857 0.00 0.00 0.00 3.60
451 459 3.702548 TGTATGTATGTGCCTCCTACGTT 59.297 43.478 0.00 0.00 0.00 3.99
452 460 3.293337 TGTATGTATGTGCCTCCTACGT 58.707 45.455 0.00 0.00 0.00 3.57
453 461 4.521130 ATGTATGTATGTGCCTCCTACG 57.479 45.455 0.00 0.00 0.00 3.51
454 462 6.340962 TGTATGTATGTATGTGCCTCCTAC 57.659 41.667 0.00 0.00 0.00 3.18
455 463 7.672239 TGTATGTATGTATGTATGTGCCTCCTA 59.328 37.037 0.00 0.00 0.00 2.94
456 464 6.496911 TGTATGTATGTATGTATGTGCCTCCT 59.503 38.462 0.00 0.00 0.00 3.69
457 465 6.697395 TGTATGTATGTATGTATGTGCCTCC 58.303 40.000 0.00 0.00 0.00 4.30
458 466 9.302345 GTATGTATGTATGTATGTATGTGCCTC 57.698 37.037 0.00 0.00 0.00 4.70
459 467 7.973944 CGTATGTATGTATGTATGTATGTGCCT 59.026 37.037 0.00 0.00 0.00 4.75
460 468 7.758076 ACGTATGTATGTATGTATGTATGTGCC 59.242 37.037 0.00 0.00 0.00 5.01
461 469 8.683550 ACGTATGTATGTATGTATGTATGTGC 57.316 34.615 0.00 0.00 0.00 4.57
504 512 6.515678 CGCGTTAGATTTCTGTATAGTACTCG 59.484 42.308 0.00 0.00 0.00 4.18
508 516 6.063640 TGCGCGTTAGATTTCTGTATAGTA 57.936 37.500 8.43 0.00 0.00 1.82
512 520 3.059597 GCATGCGCGTTAGATTTCTGTAT 60.060 43.478 8.43 0.00 0.00 2.29
521 529 0.801872 ACAAATGCATGCGCGTTAGA 59.198 45.000 14.09 0.00 46.79 2.10
522 530 1.318197 CAACAAATGCATGCGCGTTAG 59.682 47.619 14.09 3.21 46.79 2.34
529 537 0.164217 CAACGCCAACAAATGCATGC 59.836 50.000 11.82 11.82 0.00 4.06
536 544 1.429825 CCACGTCAACGCCAACAAA 59.570 52.632 1.81 0.00 44.43 2.83
537 545 3.102985 CCACGTCAACGCCAACAA 58.897 55.556 1.81 0.00 44.43 2.83
608 674 6.425114 GTCAATTTACATCTGTGTGACTGTCT 59.575 38.462 9.51 0.00 39.39 3.41
609 675 6.593978 GTCAATTTACATCTGTGTGACTGTC 58.406 40.000 0.00 0.00 39.39 3.51
611 677 5.611919 CGTCAATTTACATCTGTGTGACTG 58.388 41.667 12.36 0.00 39.39 3.51
612 678 4.152402 GCGTCAATTTACATCTGTGTGACT 59.848 41.667 12.36 0.00 39.39 3.41
617 683 2.223021 CCGGCGTCAATTTACATCTGTG 60.223 50.000 6.01 0.00 0.00 3.66
618 684 2.006888 CCGGCGTCAATTTACATCTGT 58.993 47.619 6.01 0.00 0.00 3.41
620 686 1.014352 GCCGGCGTCAATTTACATCT 58.986 50.000 12.58 0.00 0.00 2.90
624 690 2.795973 GGGCCGGCGTCAATTTAC 59.204 61.111 22.54 2.12 0.00 2.01
644 710 0.318107 CTTCCCTTTGCTGCGTGTTG 60.318 55.000 0.00 0.00 0.00 3.33
646 712 1.898574 CCTTCCCTTTGCTGCGTGT 60.899 57.895 0.00 0.00 0.00 4.49
648 714 2.985847 GCCTTCCCTTTGCTGCGT 60.986 61.111 0.00 0.00 0.00 5.24
660 726 1.137872 AGATGAGATCGTGTGGCCTTC 59.862 52.381 3.32 0.00 0.00 3.46
661 727 1.198713 AGATGAGATCGTGTGGCCTT 58.801 50.000 3.32 0.00 0.00 4.35
663 729 1.137872 AGAAGATGAGATCGTGTGGCC 59.862 52.381 0.00 0.00 0.00 5.36
665 731 3.131933 AGGAAGAAGATGAGATCGTGTGG 59.868 47.826 0.00 0.00 0.00 4.17
668 734 3.636300 AGGAGGAAGAAGATGAGATCGTG 59.364 47.826 0.00 0.00 0.00 4.35
669 735 3.888930 GAGGAGGAAGAAGATGAGATCGT 59.111 47.826 0.00 0.00 0.00 3.73
670 736 4.022935 CAGAGGAGGAAGAAGATGAGATCG 60.023 50.000 0.00 0.00 0.00 3.69
672 738 3.642848 GCAGAGGAGGAAGAAGATGAGAT 59.357 47.826 0.00 0.00 0.00 2.75
675 741 2.114616 GGCAGAGGAGGAAGAAGATGA 58.885 52.381 0.00 0.00 0.00 2.92
676 742 1.140652 GGGCAGAGGAGGAAGAAGATG 59.859 57.143 0.00 0.00 0.00 2.90
677 743 1.009429 AGGGCAGAGGAGGAAGAAGAT 59.991 52.381 0.00 0.00 0.00 2.40
712 794 3.292492 TTATAGGCCTCGACTGACTGA 57.708 47.619 9.68 0.00 0.00 3.41
716 802 3.134081 CCCTTTTTATAGGCCTCGACTGA 59.866 47.826 9.68 0.00 33.73 3.41
770 865 1.670406 GTGGACTCAGCAGCTGTGG 60.670 63.158 24.71 18.97 32.61 4.17
796 891 3.582647 TGGAAGAGAAGAATGGTGCTGTA 59.417 43.478 0.00 0.00 0.00 2.74
798 893 3.063510 TGGAAGAGAAGAATGGTGCTG 57.936 47.619 0.00 0.00 0.00 4.41
842 948 0.240145 GCAAGGAAGCAAACGTACCC 59.760 55.000 0.00 0.00 0.00 3.69
870 976 0.828343 GGAGGAGTATGAGGGGGACG 60.828 65.000 0.00 0.00 0.00 4.79
871 977 0.563672 AGGAGGAGTATGAGGGGGAC 59.436 60.000 0.00 0.00 0.00 4.46
872 978 0.861155 GAGGAGGAGTATGAGGGGGA 59.139 60.000 0.00 0.00 0.00 4.81
873 979 0.863956 AGAGGAGGAGTATGAGGGGG 59.136 60.000 0.00 0.00 0.00 5.40
876 982 2.604139 GGGAAGAGGAGGAGTATGAGG 58.396 57.143 0.00 0.00 0.00 3.86
877 983 2.604139 GGGGAAGAGGAGGAGTATGAG 58.396 57.143 0.00 0.00 0.00 2.90
878 984 1.220750 GGGGGAAGAGGAGGAGTATGA 59.779 57.143 0.00 0.00 0.00 2.15
879 985 1.221781 AGGGGGAAGAGGAGGAGTATG 59.778 57.143 0.00 0.00 0.00 2.39
880 986 1.221781 CAGGGGGAAGAGGAGGAGTAT 59.778 57.143 0.00 0.00 0.00 2.12
882 988 1.156322 TCAGGGGGAAGAGGAGGAGT 61.156 60.000 0.00 0.00 0.00 3.85
900 1006 1.109920 TCTGGCCGGAGCAGAGTATC 61.110 60.000 11.27 0.00 42.56 2.24
964 1133 3.008813 AGGCAAAGTGAGATGTGATCTGT 59.991 43.478 0.00 0.00 40.38 3.41
972 1141 1.402456 GCAGCAAGGCAAAGTGAGATG 60.402 52.381 0.00 0.00 0.00 2.90
976 1145 4.256462 TGCAGCAAGGCAAAGTGA 57.744 50.000 0.00 0.00 41.65 3.41
982 1151 0.323999 ATGGATCTTGCAGCAAGGCA 60.324 50.000 30.71 16.08 41.33 4.75
983 1152 0.102481 CATGGATCTTGCAGCAAGGC 59.898 55.000 30.71 22.84 41.33 4.35
984 1153 0.744874 CCATGGATCTTGCAGCAAGG 59.255 55.000 30.71 15.74 41.33 3.61
986 1155 0.323999 AGCCATGGATCTTGCAGCAA 60.324 50.000 18.40 7.81 0.00 3.91
987 1156 0.750546 GAGCCATGGATCTTGCAGCA 60.751 55.000 22.86 0.00 0.00 4.41
990 1159 1.228228 GGGAGCCATGGATCTTGCA 59.772 57.895 28.11 0.00 0.00 4.08
991 1160 0.536915 GAGGGAGCCATGGATCTTGC 60.537 60.000 28.11 12.67 0.00 4.01
992 1161 0.841961 TGAGGGAGCCATGGATCTTG 59.158 55.000 28.11 0.00 0.00 3.02
994 1163 0.326904 TGTGAGGGAGCCATGGATCT 60.327 55.000 28.11 10.85 0.00 2.75
1005 1194 1.185618 CGGTGACTTCCTGTGAGGGA 61.186 60.000 0.00 0.00 35.59 4.20
1113 1317 1.066587 GAGGATCCGCTCGTTGAGG 59.933 63.158 8.44 0.00 36.94 3.86
1116 1320 1.066587 GGAGAGGATCCGCTCGTTG 59.933 63.158 31.49 0.00 42.50 4.10
1203 1407 2.262211 TCGATCACGCAGTTGAAGATG 58.738 47.619 0.00 0.00 41.61 2.90
1243 1534 2.826128 TCTTGTCCAGCTCGTACTTGAT 59.174 45.455 0.00 0.00 0.00 2.57
1422 1713 0.749454 GCATGAGTCCGATGGCCTTT 60.749 55.000 3.32 0.00 0.00 3.11
1862 2223 9.425577 GTAAGTAGCATATAGATCCCTGAAAAC 57.574 37.037 0.00 0.00 0.00 2.43
1876 2237 5.746065 GCCCTCCACAATGTAAGTAGCATAT 60.746 44.000 0.00 0.00 0.00 1.78
1923 2287 1.142465 AGATCACCATCCATCAGGCAC 59.858 52.381 0.00 0.00 33.74 5.01
1968 2332 1.909376 ATTCTCGTCGACATCGTTGG 58.091 50.000 17.16 0.00 40.80 3.77
1969 2333 6.665287 GCATAATATTCTCGTCGACATCGTTG 60.665 42.308 17.16 0.00 40.80 4.10
1978 2343 7.328493 TGTTTATGAGGCATAATATTCTCGTCG 59.672 37.037 0.00 0.00 36.41 5.12
2040 2405 3.548745 TGAGGTGTAGCTCCATTGATG 57.451 47.619 8.45 0.00 0.00 3.07
2042 2407 3.378512 AGATGAGGTGTAGCTCCATTGA 58.621 45.455 8.45 0.00 0.00 2.57
2043 2408 3.834489 AGATGAGGTGTAGCTCCATTG 57.166 47.619 8.45 0.00 0.00 2.82
2062 2440 6.702329 ACTACTGACTTGATCCCTGTTTTAG 58.298 40.000 0.00 0.00 0.00 1.85
2063 2441 6.681729 ACTACTGACTTGATCCCTGTTTTA 57.318 37.500 0.00 0.00 0.00 1.52
2065 2443 5.337652 GCTACTACTGACTTGATCCCTGTTT 60.338 44.000 0.00 0.00 0.00 2.83
2067 2445 3.702045 GCTACTACTGACTTGATCCCTGT 59.298 47.826 0.00 0.00 0.00 4.00
2069 2447 3.301274 GGCTACTACTGACTTGATCCCT 58.699 50.000 0.00 0.00 0.00 4.20
2070 2448 3.031736 TGGCTACTACTGACTTGATCCC 58.968 50.000 0.00 0.00 0.00 3.85
2071 2449 3.954904 TCTGGCTACTACTGACTTGATCC 59.045 47.826 0.00 0.00 0.00 3.36
2094 2472 5.048434 GGATGGAAAAGGAGTGACTTCTTTG 60.048 44.000 18.98 0.00 38.24 2.77
2118 2497 6.715464 CCAGGAAAACGTATTACATAAGCTG 58.285 40.000 0.00 0.00 0.00 4.24
2191 2571 6.250819 CGACAAAATAAACGATTCAGCAGAT 58.749 36.000 0.00 0.00 0.00 2.90
2211 2591 4.089239 TGCCGGGCTTATGCGACA 62.089 61.111 21.46 0.00 40.82 4.35
2224 2605 2.285977 GGTCCCAAGTATTTAGTGCCG 58.714 52.381 0.00 0.00 0.00 5.69
2240 2621 1.666872 CTCGTGGTTCGGTTGGTCC 60.667 63.158 0.00 0.00 40.32 4.46
2251 2632 6.715264 AGGAAATTCATTTTCTAACTCGTGGT 59.285 34.615 0.00 0.00 42.83 4.16
2302 2683 7.342026 CCTTATCTGGTAGGGCAAACTTTTATT 59.658 37.037 0.00 0.00 0.00 1.40
2303 2684 6.833933 CCTTATCTGGTAGGGCAAACTTTTAT 59.166 38.462 0.00 0.00 0.00 1.40
2304 2685 6.184789 CCTTATCTGGTAGGGCAAACTTTTA 58.815 40.000 0.00 0.00 0.00 1.52
2305 2686 5.016831 CCTTATCTGGTAGGGCAAACTTTT 58.983 41.667 0.00 0.00 0.00 2.27
2306 2687 4.044191 ACCTTATCTGGTAGGGCAAACTTT 59.956 41.667 0.00 0.00 38.79 2.66
2307 2688 3.591977 ACCTTATCTGGTAGGGCAAACTT 59.408 43.478 0.00 0.00 38.79 2.66
2308 2689 3.190439 ACCTTATCTGGTAGGGCAAACT 58.810 45.455 0.00 0.00 38.79 2.66
2309 2690 3.646736 ACCTTATCTGGTAGGGCAAAC 57.353 47.619 0.00 0.00 38.79 2.93
2310 2691 5.034200 TCTTACCTTATCTGGTAGGGCAAA 58.966 41.667 0.00 0.00 42.74 3.68
2311 2692 4.627015 TCTTACCTTATCTGGTAGGGCAA 58.373 43.478 0.00 0.00 42.74 4.52
2312 2693 4.274794 TCTTACCTTATCTGGTAGGGCA 57.725 45.455 0.00 0.00 42.74 5.36
2313 2694 5.071923 ACATTCTTACCTTATCTGGTAGGGC 59.928 44.000 0.00 0.00 42.74 5.19
2314 2695 6.525629 CACATTCTTACCTTATCTGGTAGGG 58.474 44.000 0.00 0.00 42.74 3.53
2315 2696 5.992217 GCACATTCTTACCTTATCTGGTAGG 59.008 44.000 0.00 0.00 42.74 3.18
2316 2697 6.821388 AGCACATTCTTACCTTATCTGGTAG 58.179 40.000 0.00 0.00 42.74 3.18
2317 2698 6.382859 TGAGCACATTCTTACCTTATCTGGTA 59.617 38.462 0.00 0.00 41.22 3.25
2318 2699 5.189736 TGAGCACATTCTTACCTTATCTGGT 59.810 40.000 0.00 0.00 43.66 4.00
2319 2700 5.674525 TGAGCACATTCTTACCTTATCTGG 58.325 41.667 0.00 0.00 0.00 3.86
2320 2701 6.257411 CACTGAGCACATTCTTACCTTATCTG 59.743 42.308 0.00 0.00 0.00 2.90
2321 2702 6.344500 CACTGAGCACATTCTTACCTTATCT 58.656 40.000 0.00 0.00 0.00 1.98
2322 2703 5.007136 GCACTGAGCACATTCTTACCTTATC 59.993 44.000 0.00 0.00 44.79 1.75
2323 2704 4.878397 GCACTGAGCACATTCTTACCTTAT 59.122 41.667 0.00 0.00 44.79 1.73
2324 2705 4.253685 GCACTGAGCACATTCTTACCTTA 58.746 43.478 0.00 0.00 44.79 2.69
2325 2706 3.077359 GCACTGAGCACATTCTTACCTT 58.923 45.455 0.00 0.00 44.79 3.50
2326 2707 2.704572 GCACTGAGCACATTCTTACCT 58.295 47.619 0.00 0.00 44.79 3.08
2359 2771 5.417580 ACCTTTCTCTTTGCACTTACAACAA 59.582 36.000 0.00 0.00 0.00 2.83
2360 2772 4.947388 ACCTTTCTCTTTGCACTTACAACA 59.053 37.500 0.00 0.00 0.00 3.33
2370 2782 3.315191 TGCTGTTACACCTTTCTCTTTGC 59.685 43.478 0.00 0.00 0.00 3.68
2371 2783 4.848757 GTGCTGTTACACCTTTCTCTTTG 58.151 43.478 0.00 0.00 34.35 2.77
2382 2794 1.964373 CACCCGGGTGCTGTTACAC 60.964 63.158 39.44 0.00 39.39 2.90
2383 2795 2.428187 CACCCGGGTGCTGTTACA 59.572 61.111 39.44 0.00 39.39 2.41
2392 2804 3.001406 GTGTAGAGGCACCCGGGT 61.001 66.667 24.16 24.16 33.53 5.28
2398 2810 3.055385 TGTTTATGAGGGTGTAGAGGCAC 60.055 47.826 0.00 0.00 38.56 5.01
2399 2811 3.178046 TGTTTATGAGGGTGTAGAGGCA 58.822 45.455 0.00 0.00 0.00 4.75
2400 2812 3.197983 ACTGTTTATGAGGGTGTAGAGGC 59.802 47.826 0.00 0.00 0.00 4.70
2401 2813 5.421056 TGTACTGTTTATGAGGGTGTAGAGG 59.579 44.000 0.00 0.00 0.00 3.69
2402 2814 6.525578 TGTACTGTTTATGAGGGTGTAGAG 57.474 41.667 0.00 0.00 0.00 2.43
2403 2815 7.490657 AATGTACTGTTTATGAGGGTGTAGA 57.509 36.000 0.00 0.00 0.00 2.59
2404 2816 6.475727 CGAATGTACTGTTTATGAGGGTGTAG 59.524 42.308 0.00 0.00 0.00 2.74
2405 2817 6.071221 ACGAATGTACTGTTTATGAGGGTGTA 60.071 38.462 0.00 0.00 0.00 2.90
2406 2818 5.175859 CGAATGTACTGTTTATGAGGGTGT 58.824 41.667 0.00 0.00 0.00 4.16
2407 2819 5.063438 CACGAATGTACTGTTTATGAGGGTG 59.937 44.000 0.00 0.00 0.00 4.61
2408 2820 5.046878 TCACGAATGTACTGTTTATGAGGGT 60.047 40.000 0.00 0.00 0.00 4.34
2409 2821 5.416083 TCACGAATGTACTGTTTATGAGGG 58.584 41.667 0.00 0.00 0.00 4.30
2410 2822 6.961359 TTCACGAATGTACTGTTTATGAGG 57.039 37.500 0.00 0.00 0.00 3.86
2411 2823 9.825972 ATTTTTCACGAATGTACTGTTTATGAG 57.174 29.630 0.00 0.00 0.00 2.90
2416 2828 8.918961 TTCAATTTTTCACGAATGTACTGTTT 57.081 26.923 0.00 0.00 0.00 2.83
2417 2829 8.918961 TTTCAATTTTTCACGAATGTACTGTT 57.081 26.923 0.00 0.00 0.00 3.16
2418 2830 8.918961 TTTTCAATTTTTCACGAATGTACTGT 57.081 26.923 0.00 0.00 0.00 3.55
2450 2862 8.349245 TCAAATCTTTTATCGCTGAAAGTTTCA 58.651 29.630 17.16 17.16 38.17 2.69
2451 2863 8.728088 TCAAATCTTTTATCGCTGAAAGTTTC 57.272 30.769 8.75 8.75 35.07 2.78
2452 2864 9.132521 CATCAAATCTTTTATCGCTGAAAGTTT 57.867 29.630 3.82 0.00 35.07 2.66
2453 2865 8.299570 ACATCAAATCTTTTATCGCTGAAAGTT 58.700 29.630 3.82 0.00 35.07 2.66
2454 2866 7.820648 ACATCAAATCTTTTATCGCTGAAAGT 58.179 30.769 3.82 0.00 35.07 2.66
2455 2867 8.679288 AACATCAAATCTTTTATCGCTGAAAG 57.321 30.769 0.00 0.00 34.87 2.62
2456 2868 8.514594 AGAACATCAAATCTTTTATCGCTGAAA 58.485 29.630 0.00 0.00 0.00 2.69
2457 2869 8.044060 AGAACATCAAATCTTTTATCGCTGAA 57.956 30.769 0.00 0.00 0.00 3.02
2458 2870 7.615582 AGAACATCAAATCTTTTATCGCTGA 57.384 32.000 0.00 0.00 0.00 4.26
2459 2871 7.253552 GCAAGAACATCAAATCTTTTATCGCTG 60.254 37.037 0.00 0.00 33.73 5.18
2460 2872 6.749118 GCAAGAACATCAAATCTTTTATCGCT 59.251 34.615 0.00 0.00 33.73 4.93
2461 2873 6.527722 TGCAAGAACATCAAATCTTTTATCGC 59.472 34.615 0.00 0.00 33.73 4.58
2462 2874 8.451687 TTGCAAGAACATCAAATCTTTTATCG 57.548 30.769 0.00 0.00 33.73 2.92
2464 2876 9.768662 ACTTTGCAAGAACATCAAATCTTTTAT 57.231 25.926 0.00 0.00 33.73 1.40
2465 2877 9.598517 AACTTTGCAAGAACATCAAATCTTTTA 57.401 25.926 0.00 0.00 33.73 1.52
2466 2878 8.496707 AACTTTGCAAGAACATCAAATCTTTT 57.503 26.923 0.00 0.00 33.73 2.27
2467 2879 8.496707 AAACTTTGCAAGAACATCAAATCTTT 57.503 26.923 0.00 0.00 33.73 2.52
2468 2880 7.765360 TGAAACTTTGCAAGAACATCAAATCTT 59.235 29.630 0.00 0.00 36.35 2.40
2469 2881 7.267128 TGAAACTTTGCAAGAACATCAAATCT 58.733 30.769 0.00 0.00 0.00 2.40
2470 2882 7.306983 CCTGAAACTTTGCAAGAACATCAAATC 60.307 37.037 0.00 0.00 0.00 2.17
2471 2883 6.480981 CCTGAAACTTTGCAAGAACATCAAAT 59.519 34.615 0.00 0.00 0.00 2.32
2472 2884 5.811613 CCTGAAACTTTGCAAGAACATCAAA 59.188 36.000 0.00 0.00 0.00 2.69
2473 2885 5.126869 TCCTGAAACTTTGCAAGAACATCAA 59.873 36.000 0.00 0.00 0.00 2.57
2474 2886 4.644234 TCCTGAAACTTTGCAAGAACATCA 59.356 37.500 0.00 1.87 0.00 3.07
2475 2887 5.186996 TCCTGAAACTTTGCAAGAACATC 57.813 39.130 0.00 0.00 0.00 3.06
2476 2888 5.105392 TGTTCCTGAAACTTTGCAAGAACAT 60.105 36.000 17.58 0.00 39.32 2.71
2477 2889 4.219507 TGTTCCTGAAACTTTGCAAGAACA 59.780 37.500 17.58 17.58 40.92 3.18
2478 2890 4.743493 TGTTCCTGAAACTTTGCAAGAAC 58.257 39.130 13.87 13.87 38.76 3.01
2479 2891 5.398603 TTGTTCCTGAAACTTTGCAAGAA 57.601 34.783 0.00 0.00 38.76 2.52
2480 2892 5.398603 TTTGTTCCTGAAACTTTGCAAGA 57.601 34.783 0.00 0.00 38.76 3.02
2481 2893 7.254421 GGTTATTTGTTCCTGAAACTTTGCAAG 60.254 37.037 0.00 0.00 38.76 4.01
2482 2894 6.536941 GGTTATTTGTTCCTGAAACTTTGCAA 59.463 34.615 0.00 0.00 38.76 4.08
2483 2895 6.045955 GGTTATTTGTTCCTGAAACTTTGCA 58.954 36.000 0.00 0.00 38.76 4.08
2484 2896 6.280643 AGGTTATTTGTTCCTGAAACTTTGC 58.719 36.000 0.00 0.00 38.76 3.68
2485 2897 7.167468 CGAAGGTTATTTGTTCCTGAAACTTTG 59.833 37.037 0.00 0.00 38.76 2.77
2486 2898 7.147966 ACGAAGGTTATTTGTTCCTGAAACTTT 60.148 33.333 0.00 0.00 38.76 2.66
2487 2899 6.320418 ACGAAGGTTATTTGTTCCTGAAACTT 59.680 34.615 0.00 0.00 38.76 2.66
2488 2900 5.826208 ACGAAGGTTATTTGTTCCTGAAACT 59.174 36.000 0.00 0.00 38.76 2.66
2489 2901 5.912955 CACGAAGGTTATTTGTTCCTGAAAC 59.087 40.000 0.00 0.00 38.43 2.78
2490 2902 5.009210 CCACGAAGGTTATTTGTTCCTGAAA 59.991 40.000 0.00 0.00 0.00 2.69
2491 2903 4.517453 CCACGAAGGTTATTTGTTCCTGAA 59.483 41.667 0.00 0.00 0.00 3.02
2492 2904 4.069304 CCACGAAGGTTATTTGTTCCTGA 58.931 43.478 0.00 0.00 0.00 3.86
2493 2905 4.069304 TCCACGAAGGTTATTTGTTCCTG 58.931 43.478 0.00 0.00 39.02 3.86
2494 2906 4.324267 CTCCACGAAGGTTATTTGTTCCT 58.676 43.478 0.00 0.00 39.02 3.36
2495 2907 3.119955 GCTCCACGAAGGTTATTTGTTCC 60.120 47.826 0.00 0.00 39.02 3.62
2496 2908 3.119955 GGCTCCACGAAGGTTATTTGTTC 60.120 47.826 0.00 0.00 39.02 3.18
2497 2909 2.817844 GGCTCCACGAAGGTTATTTGTT 59.182 45.455 0.00 0.00 39.02 2.83
2498 2910 2.433436 GGCTCCACGAAGGTTATTTGT 58.567 47.619 0.00 0.00 39.02 2.83
2499 2911 1.743394 GGGCTCCACGAAGGTTATTTG 59.257 52.381 0.00 0.00 39.02 2.32
2500 2912 1.633945 AGGGCTCCACGAAGGTTATTT 59.366 47.619 0.00 0.00 39.02 1.40
2501 2913 1.209747 GAGGGCTCCACGAAGGTTATT 59.790 52.381 0.00 0.00 39.02 1.40
2502 2914 0.831307 GAGGGCTCCACGAAGGTTAT 59.169 55.000 0.00 0.00 39.02 1.89
2503 2915 0.543410 TGAGGGCTCCACGAAGGTTA 60.543 55.000 0.00 0.00 39.02 2.85
2504 2916 1.841556 TGAGGGCTCCACGAAGGTT 60.842 57.895 0.00 0.00 39.02 3.50
2505 2917 2.203788 TGAGGGCTCCACGAAGGT 60.204 61.111 0.00 0.00 39.02 3.50
2506 2918 2.111999 TTGTGAGGGCTCCACGAAGG 62.112 60.000 0.00 0.00 37.34 3.46
2507 2919 0.250295 TTTGTGAGGGCTCCACGAAG 60.250 55.000 4.31 0.00 37.34 3.79
2508 2920 0.181587 TTTTGTGAGGGCTCCACGAA 59.818 50.000 4.31 4.31 37.34 3.85
2509 2921 0.181587 TTTTTGTGAGGGCTCCACGA 59.818 50.000 0.00 0.00 37.34 4.35
2510 2922 2.714259 TTTTTGTGAGGGCTCCACG 58.286 52.632 1.49 0.00 37.34 4.94
2528 2940 7.173047 ACACTTTTGAGCAGTGAATTTGTTTTT 59.827 29.630 8.03 0.00 43.90 1.94
2529 2941 6.650390 ACACTTTTGAGCAGTGAATTTGTTTT 59.350 30.769 8.03 0.00 43.90 2.43
2530 2942 6.165577 ACACTTTTGAGCAGTGAATTTGTTT 58.834 32.000 8.03 0.00 43.90 2.83
2531 2943 5.723295 ACACTTTTGAGCAGTGAATTTGTT 58.277 33.333 8.03 0.00 43.90 2.83
2532 2944 5.329035 ACACTTTTGAGCAGTGAATTTGT 57.671 34.783 8.03 0.00 43.90 2.83
2533 2945 6.264832 TGTACACTTTTGAGCAGTGAATTTG 58.735 36.000 8.03 0.00 43.90 2.32
2534 2946 6.449635 TGTACACTTTTGAGCAGTGAATTT 57.550 33.333 8.03 0.00 43.90 1.82
2535 2947 6.639632 ATGTACACTTTTGAGCAGTGAATT 57.360 33.333 8.03 0.00 43.90 2.17
2536 2948 7.744087 TTATGTACACTTTTGAGCAGTGAAT 57.256 32.000 8.03 2.37 43.90 2.57
2537 2949 7.282224 AGTTTATGTACACTTTTGAGCAGTGAA 59.718 33.333 8.03 0.00 43.90 3.18
2538 2950 6.765989 AGTTTATGTACACTTTTGAGCAGTGA 59.234 34.615 8.03 0.00 43.90 3.41
2539 2951 6.959361 AGTTTATGTACACTTTTGAGCAGTG 58.041 36.000 0.00 0.00 46.18 3.66
2540 2952 7.568199 AAGTTTATGTACACTTTTGAGCAGT 57.432 32.000 0.00 0.00 28.27 4.40
2541 2953 8.128582 TCAAAGTTTATGTACACTTTTGAGCAG 58.871 33.333 0.00 0.00 40.52 4.24
2542 2954 7.990917 TCAAAGTTTATGTACACTTTTGAGCA 58.009 30.769 0.00 0.00 40.52 4.26
2543 2955 8.850454 TTCAAAGTTTATGTACACTTTTGAGC 57.150 30.769 0.00 0.00 40.52 4.26
2564 2976 9.995003 ACCTAAACAAGCAAAATCAATATTCAA 57.005 25.926 0.00 0.00 0.00 2.69
2565 2977 9.421806 CACCTAAACAAGCAAAATCAATATTCA 57.578 29.630 0.00 0.00 0.00 2.57
2566 2978 9.638239 TCACCTAAACAAGCAAAATCAATATTC 57.362 29.630 0.00 0.00 0.00 1.75
2567 2979 9.643693 CTCACCTAAACAAGCAAAATCAATATT 57.356 29.630 0.00 0.00 0.00 1.28
2568 2980 8.253113 CCTCACCTAAACAAGCAAAATCAATAT 58.747 33.333 0.00 0.00 0.00 1.28
2569 2981 7.309744 CCCTCACCTAAACAAGCAAAATCAATA 60.310 37.037 0.00 0.00 0.00 1.90
2570 2982 6.458210 CCTCACCTAAACAAGCAAAATCAAT 58.542 36.000 0.00 0.00 0.00 2.57
2571 2983 5.221422 CCCTCACCTAAACAAGCAAAATCAA 60.221 40.000 0.00 0.00 0.00 2.57
2572 2984 4.280677 CCCTCACCTAAACAAGCAAAATCA 59.719 41.667 0.00 0.00 0.00 2.57
2573 2985 4.809673 CCCTCACCTAAACAAGCAAAATC 58.190 43.478 0.00 0.00 0.00 2.17
2574 2986 3.006859 GCCCTCACCTAAACAAGCAAAAT 59.993 43.478 0.00 0.00 0.00 1.82
2575 2987 2.364002 GCCCTCACCTAAACAAGCAAAA 59.636 45.455 0.00 0.00 0.00 2.44
2576 2988 1.960689 GCCCTCACCTAAACAAGCAAA 59.039 47.619 0.00 0.00 0.00 3.68
2577 2989 1.144913 AGCCCTCACCTAAACAAGCAA 59.855 47.619 0.00 0.00 0.00 3.91
2578 2990 0.771127 AGCCCTCACCTAAACAAGCA 59.229 50.000 0.00 0.00 0.00 3.91
2579 2991 1.454201 GAGCCCTCACCTAAACAAGC 58.546 55.000 0.00 0.00 0.00 4.01
2580 2992 1.340114 GGGAGCCCTCACCTAAACAAG 60.340 57.143 0.00 0.00 0.00 3.16
2581 2993 0.696501 GGGAGCCCTCACCTAAACAA 59.303 55.000 0.00 0.00 0.00 2.83
2582 2994 2.383608 GGGAGCCCTCACCTAAACA 58.616 57.895 0.00 0.00 0.00 2.83
2589 3001 0.251787 AACAAATGGGGAGCCCTCAC 60.252 55.000 5.38 0.00 45.70 3.51
2590 3002 1.377690 TAACAAATGGGGAGCCCTCA 58.622 50.000 5.38 2.46 45.70 3.86
2591 3003 2.755952 ATAACAAATGGGGAGCCCTC 57.244 50.000 5.38 0.00 45.70 4.30
2592 3004 3.490060 AAATAACAAATGGGGAGCCCT 57.510 42.857 5.38 0.00 45.70 5.19
2593 3005 4.568072 AAAAATAACAAATGGGGAGCCC 57.432 40.909 0.00 0.00 45.71 5.19
2594 3006 6.593770 CAGTTAAAAATAACAAATGGGGAGCC 59.406 38.462 2.01 0.00 32.63 4.70
2595 3007 7.382898 TCAGTTAAAAATAACAAATGGGGAGC 58.617 34.615 2.01 0.00 32.63 4.70
2596 3008 9.771534 TTTCAGTTAAAAATAACAAATGGGGAG 57.228 29.630 2.01 0.00 32.63 4.30
2597 3009 9.549078 GTTTCAGTTAAAAATAACAAATGGGGA 57.451 29.630 2.01 0.00 32.63 4.81
2598 3010 9.554395 AGTTTCAGTTAAAAATAACAAATGGGG 57.446 29.630 2.01 0.00 32.63 4.96
2609 3021 9.598517 TGATCTTGCAAAGTTTCAGTTAAAAAT 57.401 25.926 0.00 0.00 46.34 1.82
2610 3022 8.994429 TGATCTTGCAAAGTTTCAGTTAAAAA 57.006 26.923 0.00 0.00 46.34 1.94
2611 3023 9.248291 GATGATCTTGCAAAGTTTCAGTTAAAA 57.752 29.630 0.00 0.00 46.34 1.52
2612 3024 7.591057 CGATGATCTTGCAAAGTTTCAGTTAAA 59.409 33.333 0.00 0.00 46.34 1.52
2613 3025 7.041440 TCGATGATCTTGCAAAGTTTCAGTTAA 60.041 33.333 0.00 0.00 46.34 2.01
2614 3026 6.426633 TCGATGATCTTGCAAAGTTTCAGTTA 59.573 34.615 0.00 0.00 46.34 2.24
2615 3027 5.239306 TCGATGATCTTGCAAAGTTTCAGTT 59.761 36.000 0.00 0.00 46.34 3.16
2616 3028 4.756642 TCGATGATCTTGCAAAGTTTCAGT 59.243 37.500 0.00 0.00 46.34 3.41
2617 3029 5.287170 TCGATGATCTTGCAAAGTTTCAG 57.713 39.130 0.00 0.00 46.34 3.02
2618 3030 5.687770 TTCGATGATCTTGCAAAGTTTCA 57.312 34.783 0.00 1.76 46.34 2.69
2619 3031 6.145535 ACTTTCGATGATCTTGCAAAGTTTC 58.854 36.000 0.00 0.00 46.34 2.78
2620 3032 6.076981 ACTTTCGATGATCTTGCAAAGTTT 57.923 33.333 0.00 0.00 46.34 2.66
2621 3033 5.695851 ACTTTCGATGATCTTGCAAAGTT 57.304 34.783 0.00 0.00 46.34 2.66
2622 3034 5.695851 AACTTTCGATGATCTTGCAAAGT 57.304 34.783 0.00 2.03 46.34 2.66
2624 3036 6.070897 TCAAACTTTCGATGATCTTGCAAA 57.929 33.333 0.00 0.00 0.00 3.68
2625 3037 5.687770 TCAAACTTTCGATGATCTTGCAA 57.312 34.783 0.00 0.00 0.00 4.08
2626 3038 5.872635 GATCAAACTTTCGATGATCTTGCA 58.127 37.500 15.51 0.00 43.81 4.08
2631 3043 8.017373 TCAAACAAGATCAAACTTTCGATGATC 58.983 33.333 15.14 15.14 46.23 2.92
2632 3044 7.874940 TCAAACAAGATCAAACTTTCGATGAT 58.125 30.769 0.00 0.00 36.54 2.45
2633 3045 7.258022 TCAAACAAGATCAAACTTTCGATGA 57.742 32.000 0.00 0.00 0.00 2.92
2634 3046 7.592533 ACATCAAACAAGATCAAACTTTCGATG 59.407 33.333 0.00 0.00 0.00 3.84
2635 3047 7.651808 ACATCAAACAAGATCAAACTTTCGAT 58.348 30.769 0.00 0.00 0.00 3.59
2636 3048 7.026631 ACATCAAACAAGATCAAACTTTCGA 57.973 32.000 0.00 0.00 0.00 3.71
2637 3049 6.360681 GGACATCAAACAAGATCAAACTTTCG 59.639 38.462 0.00 0.00 0.00 3.46
2638 3050 6.360681 CGGACATCAAACAAGATCAAACTTTC 59.639 38.462 0.00 0.00 0.00 2.62
2639 3051 6.039270 TCGGACATCAAACAAGATCAAACTTT 59.961 34.615 0.00 0.00 0.00 2.66
2640 3052 5.530915 TCGGACATCAAACAAGATCAAACTT 59.469 36.000 0.00 0.00 0.00 2.66
2641 3053 5.063204 TCGGACATCAAACAAGATCAAACT 58.937 37.500 0.00 0.00 0.00 2.66
2642 3054 5.356882 TCGGACATCAAACAAGATCAAAC 57.643 39.130 0.00 0.00 0.00 2.93
2643 3055 6.039270 ACTTTCGGACATCAAACAAGATCAAA 59.961 34.615 0.00 0.00 0.00 2.69
2644 3056 5.530915 ACTTTCGGACATCAAACAAGATCAA 59.469 36.000 0.00 0.00 0.00 2.57
2645 3057 5.063204 ACTTTCGGACATCAAACAAGATCA 58.937 37.500 0.00 0.00 0.00 2.92
2646 3058 5.613358 ACTTTCGGACATCAAACAAGATC 57.387 39.130 0.00 0.00 0.00 2.75
2647 3059 6.391227 AAACTTTCGGACATCAAACAAGAT 57.609 33.333 0.00 0.00 0.00 2.40
2648 3060 5.816919 GAAACTTTCGGACATCAAACAAGA 58.183 37.500 0.00 0.00 0.00 3.02
2704 3116 9.930693 CCTACACCCTCTATGAATAGTAAATTC 57.069 37.037 0.00 0.00 0.00 2.17
2705 3117 8.881262 CCCTACACCCTCTATGAATAGTAAATT 58.119 37.037 0.00 0.00 0.00 1.82
2706 3118 7.458170 CCCCTACACCCTCTATGAATAGTAAAT 59.542 40.741 0.00 0.00 0.00 1.40
2707 3119 6.785963 CCCCTACACCCTCTATGAATAGTAAA 59.214 42.308 0.00 0.00 0.00 2.01
2708 3120 6.320518 CCCCTACACCCTCTATGAATAGTAA 58.679 44.000 0.00 0.00 0.00 2.24
2709 3121 5.754148 GCCCCTACACCCTCTATGAATAGTA 60.754 48.000 0.00 0.00 0.00 1.82
2710 3122 4.753186 CCCCTACACCCTCTATGAATAGT 58.247 47.826 0.00 0.00 0.00 2.12
2711 3123 3.515901 GCCCCTACACCCTCTATGAATAG 59.484 52.174 0.00 0.00 0.00 1.73
2712 3124 3.116512 TGCCCCTACACCCTCTATGAATA 60.117 47.826 0.00 0.00 0.00 1.75
2713 3125 2.339769 GCCCCTACACCCTCTATGAAT 58.660 52.381 0.00 0.00 0.00 2.57
2714 3126 1.009060 TGCCCCTACACCCTCTATGAA 59.991 52.381 0.00 0.00 0.00 2.57
2715 3127 0.639943 TGCCCCTACACCCTCTATGA 59.360 55.000 0.00 0.00 0.00 2.15
2716 3128 0.759346 GTGCCCCTACACCCTCTATG 59.241 60.000 0.00 0.00 34.35 2.23
2717 3129 3.242355 GTGCCCCTACACCCTCTAT 57.758 57.895 0.00 0.00 34.35 1.98
2718 3130 4.800764 GTGCCCCTACACCCTCTA 57.199 61.111 0.00 0.00 34.35 2.43
2724 3136 2.933834 ACCCTGGTGCCCCTACAC 60.934 66.667 0.00 0.00 39.94 2.90
2725 3137 2.933287 CACCCTGGTGCCCCTACA 60.933 66.667 2.89 0.00 39.39 2.74
2733 3145 0.954452 GAGTTTTCAGCACCCTGGTG 59.046 55.000 12.05 12.05 46.40 4.17
2734 3146 0.846693 AGAGTTTTCAGCACCCTGGT 59.153 50.000 0.00 0.00 39.61 4.00
2735 3147 1.242076 CAGAGTTTTCAGCACCCTGG 58.758 55.000 0.00 0.00 39.61 4.45
2736 3148 1.876156 GACAGAGTTTTCAGCACCCTG 59.124 52.381 0.00 0.00 40.54 4.45
2737 3149 1.771255 AGACAGAGTTTTCAGCACCCT 59.229 47.619 0.00 0.00 0.00 4.34
2738 3150 2.147150 GAGACAGAGTTTTCAGCACCC 58.853 52.381 0.00 0.00 0.00 4.61
2739 3151 2.838736 TGAGACAGAGTTTTCAGCACC 58.161 47.619 0.00 0.00 0.00 5.01
2740 3152 3.873952 ACTTGAGACAGAGTTTTCAGCAC 59.126 43.478 0.00 0.00 0.00 4.40
2741 3153 3.873361 CACTTGAGACAGAGTTTTCAGCA 59.127 43.478 0.00 0.00 0.00 4.41
2742 3154 3.303659 GCACTTGAGACAGAGTTTTCAGC 60.304 47.826 0.00 0.00 0.00 4.26
2743 3155 3.873361 TGCACTTGAGACAGAGTTTTCAG 59.127 43.478 0.00 0.00 0.00 3.02
2744 3156 3.872696 TGCACTTGAGACAGAGTTTTCA 58.127 40.909 0.00 0.00 0.00 2.69
2745 3157 4.882671 TTGCACTTGAGACAGAGTTTTC 57.117 40.909 0.00 0.00 0.00 2.29
2746 3158 4.142381 GGTTTGCACTTGAGACAGAGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
2747 3159 3.378427 GGTTTGCACTTGAGACAGAGTTT 59.622 43.478 0.00 0.00 0.00 2.66
2748 3160 2.945668 GGTTTGCACTTGAGACAGAGTT 59.054 45.455 0.00 0.00 0.00 3.01
2749 3161 2.092968 TGGTTTGCACTTGAGACAGAGT 60.093 45.455 0.00 0.00 0.00 3.24
2750 3162 2.564771 TGGTTTGCACTTGAGACAGAG 58.435 47.619 0.00 0.00 0.00 3.35
2751 3163 2.708216 TGGTTTGCACTTGAGACAGA 57.292 45.000 0.00 0.00 0.00 3.41
2752 3164 3.144506 AGATGGTTTGCACTTGAGACAG 58.855 45.455 0.00 0.00 0.00 3.51
2753 3165 3.141398 GAGATGGTTTGCACTTGAGACA 58.859 45.455 0.00 0.00 0.00 3.41
2754 3166 3.058639 GTGAGATGGTTTGCACTTGAGAC 60.059 47.826 0.00 0.00 0.00 3.36
2755 3167 3.141398 GTGAGATGGTTTGCACTTGAGA 58.859 45.455 0.00 0.00 0.00 3.27
2756 3168 2.227388 GGTGAGATGGTTTGCACTTGAG 59.773 50.000 0.00 0.00 0.00 3.02
2757 3169 2.229792 GGTGAGATGGTTTGCACTTGA 58.770 47.619 0.00 0.00 0.00 3.02
2758 3170 1.955778 TGGTGAGATGGTTTGCACTTG 59.044 47.619 0.00 0.00 0.00 3.16
2759 3171 2.233271 CTGGTGAGATGGTTTGCACTT 58.767 47.619 0.00 0.00 0.00 3.16
2760 3172 1.901591 CTGGTGAGATGGTTTGCACT 58.098 50.000 0.00 0.00 0.00 4.40
2818 3230 2.079158 CAGATAGCACCACACCACAAG 58.921 52.381 0.00 0.00 0.00 3.16
2860 3272 8.079211 AGTGATTCTAGTTCTAGGCATTACAA 57.921 34.615 6.96 0.00 0.00 2.41
2863 3275 8.198109 GTGAAGTGATTCTAGTTCTAGGCATTA 58.802 37.037 6.96 0.00 32.47 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.