>input_sequence_65591
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--------------------------------------------------------------------ATGGCTCCCTCA
CAGGAAGTCA------------CCGCCGCCACCAAGGAGCCGTCCACCAACGGCAACGGGAC---CAACGGAACCAACGG
CACGGCCGCCGCCGCCCCGAAGACCAAGACGCCGGCCCTCAACGAGCGGATCCTCTCCTCCATCACGCGCCGCTCGGTCG
CCGCGCACCCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACCATCTTCAACTGC---------------------
------------------------------------------------------------------GTGATCGAGATCCC
CAAGGGGAGCAAGATCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGGGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACGACGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCCGGGTGCTTCCTCCGGGCAAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCG
CCGAGATCAGAAGATTCTTCGAGGACTGTGAGTCATTGATGCCTCTGATCAGATCAGGTTAATTCGTCACAAGA------
------GAATGTGTTCCTGAT---------------------ATGTGTTTCTTTGATTTTGATTG--------ATT----
-GGGGAATTCATCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTCCCCATTCCCCGGTTTTCGATCCTCGATTCATGTCGAA----ACGCGATCAATTAGC
ATTCG------AGTAATATATGC-------ATTGAGCTGATGTT------GCGTCG-TTTTCGTTTTCAGGGATCTATAT
GCTACTTACATTGTGGAGGGCCTGAGAAGGT---AG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr3B_1_TraesCS3B01G611600
GGTGGTTGGCGTTCGCTGGCTCACGCGTTTTTTTTTCCAATAGGTTTGATTGTTGATTCAATCAATTTAAATTAAATCAC
ACGGACCGTGCTGACAGTAGTGCAACAGAAGAGAAGGGAAGGCCACCGACACGCAGAAATGGCAGAGGCAGGCGACAGTG
---GAGCTGCCAAATTCAGGCATTCAGTGATGCACAACTCACACT----GATGAATGGCGTGAAATACAGAGGCACAGAA
CCACATCAACCAACTATACATACATACATACATACATACTCATACATACTCCCTCTGTTACCTAATATAAGACATTTTAG
CTATTTCAAAATAGTAACTATATACCCACAAAGAAAATATTGACTATATACATACATACTAAAGTGAGTGAACATACATA
CTAAAATGTGTCTAGATATATACGTATTAAGGAAAAACTAAAAGGTCCTATATTAGGAAACGTAGGAGGCACATACATAC
ATACATACATACGTACATACATTAAAAAATGCGAGTACTATACAGAAATCTAACGCGCATGCATTT--------------
-----------------------------------------GTTGGCGTTGACGTGGCCTGGGCATCACGGCGGCGGCAA
CAGCCTCGG---TCCCACGTGGAGGCACGTCATAGACAGTCACACAGATGTAAATTGACGCCGGCCCGGCAACACGCAGC
AAAGGGAAGGCCACACGATCTCA----------------TCTTCTTCCTCCTCTGCCCTCCCTGCACCGGCAGTCA----
GTCAG----TCGAGGCCTATAAAAAGGGAGGCAGAGTCTCCTCTCCTCTCAT-----CATCACACCACAGCTGCTGAGTC
CACAGCACAGTACAGCAC-----CATTCTTCTCTTCCATTCTACTCAACGCAAAGTCC------CTCGGGTACGTTTGCT
TCCTTGCGTTGCGTTCGTCCCCCTCATACTCCTCCTCTTCCCCCTGATACTCTGCTCCGGCCAGATCTCCTCCACACCG-
----------------CCG---------------------------------------------ACTAACACACTGCACA
CCTCCA-TTTTCACAGATCACATCTCACTTTGCCTTGCTGCAAG--------------------ATCCATGGCTCCCTCA
CAGGAAGTCA------------CCGCCGCCACCAAGGAGCCGTCCACCAACGGCAACGGGAC---CAACGGAACCAACGG
CACGGCCGCCGCCGCCCCGAAGACCAAGACGCCGGCCCTCAACGAGCGGATCCTCTCCTCCATCACGCGCCGCTCGGTCG
CCGCGCACCCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACCATCTTCAACTGC---------------------
------------------------------------------------------------------GTGATCGAGATCCC
CAAGGGGAGCAAGATCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGGGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACGACGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCCGGGTGCTTCCTCCGGGCAAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCG
CCGAGATCAGAAGATTCTTCGAGGACTGTGAGTCATTGATGCCTCTGATCAGATCAGGTTAATTCGTCACAAGA------
------GAATGTGTTCCTGAT---------------------ATGTGTTTCTTTGATTTTGATTG--------ATT----
-GGGGAATTCATCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTCCCCATTCCCCGGTTTTCGATCCTCGATTCATGTCGAA----ACGCGATCAATTAGC
ATTCG------AGTAATATATGC-------ATTGAGCTGATGTT------GCGTCG-TTTTCGTTTTCAGGGATCTATAT
GCTACTTACATTGTGGAGGGCCTGAGAAGGT---AGGAGGAGGATGGTGCCTGATGGATGGTGATCTGGTGCCGCCTTGC
CACTTGCTGCACC-AACGATGTCGACGAGAATATTATGCCTCATAAACATACATACAATACATTCTTGTTTTGTTACATA
CATACATCA----------ATGGAGCTACACCTCAT---CTAAAACAGGGATCAAGTCAGTAGTAGCCAGACAAAG-AAG
TCACTCCTTTTCCATCCAGCTTATGTAATACGTTTTCCTGGCTGAATATGAGATGCTGGCATTACTGTA-TTTTTTCCCC
CATTGCTAATATCTGCTGAATCGTTTATTTTGTCGCATAAG-CCCGGCACTAAATACTTGGGACCAACCGAACCACGAGT
TAGAAAATGAATTTCCTATTTGACCAATGCAGATTCTGCAAAAATAAAAGTTTGCCCTACCAGATAAGGTAAGAAT----
---------------------------GTGCTCAGTGCTCTTTCCTTTTCTTGTTGTAAGTGCAAAGAGAAAGGTGTAAC
AGCACCCGGGTGCCTCTACACCCTCATAAACAGTACATTCGTGAAAAATTGAAAAAAAATCTGAAACTTTCAGCGATAAA
AGATTTGATGTTCTTGCAAAGTTTCAGGAACAAATAACCTTCGTGGAGCCCTCACAAAAAAAAACAAATTCACTGCTCAA
AAGTGTACATAAACTTTGAATATTGATTTTGCTTGTTTAGGTGAGGGCTCCCCATTTGTTATTTTTAACTGAAACTTTGC
AAGATCATCGAAAGTTTGATCTTGTTTGATGTCCGAAAGTTTCGAATTTTTGTGATTTTTTTTTTTGAATTTTTTGAATT
TACTATTCATAGAGGGTGTAGGGGCACCAGGGTGCTGAAAACTCTGTCTCAAGTGCAAACCATCTCACCAGCAAACAAAT
ATGCTCTAGCGAAGTAACATACATCAATGCTTGTGGTGTGGTGCTATCTGTTGAGTGATGTGTGTCATTTTTTGTAATGC
CTAGAACTAGAATCACTTCACCAAAGTCAGATATTACTGACAAA
>chr3D_103
--------------------------------------------------------------------------------
----------------------CAACAGAAGGGAAGGGAAGGCCACCGACACGCAAAAAG------GGCAGGCGACAGTT
GTAGAGCTACCAAATTCAGGCATTCAGTGATGCACAACTCACTCTCAGCGACGAATGGCGTGAAATACAGAGGTACAGAA
CCACATCAAGCAGC----CATACATACATACAGTAA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAAAAATGTGAGCACTCTACAGAAAAGTAACGCACATGCACACGCAGTCACTTCTGA
TCCAGTCTCCTCTCATCTCCAGGGTAGGAGCGTGTGCTGGCGTTGGCGTTGACGTGGCCTGGCCATCAGGGCAACATGCC
TGCCTGACCTTATCCCACGTGGAGGCACGTCATTCATGGTCAGCCTGATTTTAATTCACGCCGGCCCGG-----------
-AAGGCCAAGTCAGCAGTTCAGCACCGCCGTTCTCATCTTCATCTTCTTCCTCTGCCCTCCCTGCACCGGCAGGCA----
GGCAGGTAGTCGAGGCCTATAAGACGGGAGGCAGGGTCTCTTCTCCTCTCATCACCACAACACAGCACAGCCGCTGAGTC
CACAGCAGAGCAGAGCAGAGCAGCATTCTTCTCTTCCATTCTACTCAACGCAAAGTCTCTCTATCTCAGGTACGTTTGCT
TCGTTGCGTTGCGTCGTCTCC--C--TCCTCCTGCTCTTCCCCCTCATACTCTGCTCCGCCCACATCTCCTCCACCCCAA
GATCGACTGCCAGGCCCCG---------------------------------------------ACTAACATACCGCACA
CCTCCA-TTTTCGCAGATCAGATCAGATCAGATCGAGCGCTAGGCTGTAAGAT---------CCAACCATGGCCCCCTCA
CAGGAAGTCGCGGCCCCCGCCGCCACCGCCACCAAGGAGCCATCCGCCAACGGCAACGGGAC---CAA---------CGG
CACGCCCGCAGCCGCCCCCAAGACCAAGGCCCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCG
CCGCCCACCCGTGGCACGACCTGGAGATCGGCCCGGACGCTCCCACAATCTTCAACTGCGTAAGCACGCAACCTTCTTCT
TCCTCCTCCCGCCACCACCAATTCCGGCCGCCACGCAAACTAAATCATCTCCGCAACTCCGTGCAGGTGATCGAGATCCC
CAAGGGGAGCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCCGGATGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGATCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCG
CCGAGATCAGGCGATTCTTCGAGGACTGTGAGTCATACTACTGCTACTTGTCATGTTTTTACTACTGACCGA--------
----------------CTGCA---------------------ATGTTTTAGACTGATGCTGACTGACAATTTTATT----
-GGGGAATTCATCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCGGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTCCCCATTCCCCGGTTTTCGATTCTCGATTCATGTCGAA----ACACGAGCAATTAGC
AAACCATTCAAAGTGATATATGC-------ATCCAACTGATGATGACGTTTCATGATTTTTCCTTTACAGGGATCTCTAT
GCCACCTACATTTGCGAGGGCCTGAGAAGATAG-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr3A_539
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------T--------------
-----------------------------------------GTTGGCGTTGACGTGGCCTCGCCATCCCATCA-CGGCAA
CATGCTTGA---CACCACGTGGAGGCACGTCATTCATGGTCAGCCTGATTTTAATTCACGCCGGCAACATATCTCGCAGC
AAAGGCCGAGTCAGCAATTCAGCACCACCCTTCTCATCTTCATCTTCTTCCTCTGCCCT----GCGCCGGCAGGCA----
GCAGATGGTGGAGG--CTATAAAAAGGGAGGCAGAGTA-----TCCTCTCATCACCACACCACAGCTGAT---CTCAGTC
CACAGCAC-----AGCAGAGAAGCAT-----TCTTCCATTCTACTCAACGCAAAGTCCCTCCCTCC--GGTACGTTTGCT
TCGTTGCGTTGCGTCGTCGAC--C--TCCTCCTGCTCTTCCCCCCCATACTCTGCTCCGGCCAGATCTCCTCAACACCG-
----------------CCGGAAGGGAG-TGGTGAGCTCGCCCCAAGATCGACTGCCAGGCCCCGACTAACACACTGCACA
CTTCCA-TTTCCGCAGATCAGATC----------GAGCGCTAGCCTCGCCGCAACATCCATCCCATCCATGGCCCCCTCC
CAAGAAGTCGCGCCCCCTGCCGCCGCCATCACCAAGGACCCATCCACCAACGGCAACGGCAACGGCAACGG---CAACGG
CACAGCCGCACCCGCCCCCAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCG
CCGCCCACCCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACAATCTTCAACTGC---------------------
------------------------------------------------------------------GTGATCGAGATCCC
CAAGGGGAGCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCGGGGTGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTCCCGCCCCACCGCCTCG
CCGAGATCAGGCGCTTCTTCGAGGACTGTAAGTCATTGATGCCTCTGAACTCTGA--------TCCTCAGAAGA------
------GAATGTGCTCCTGAATGTGTTTTCTTCTGTTCCTGAATGTGTTTCTCTGATT------G--------ATTGATT
GGGGAATTTCATCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTTCTCC-TCCCCGGTTTTCGATTCTCGATTCATGTTGAA----ACATGAGAAATTGAA
CTGATGA--------------------------------ATGATGATGTTGCATGATTTTTCCTTTTCAGGGATCTCTAT
GCCACCTACATTTGCGAGGGCCTGAGAAGGTAG-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr3B_673
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------TCTTCTTCTTCCTCCTCCTCTGCCCTCCCTGCACCGGCAGCCCGCAG
GCAGTCGGTGGAGG--CTATAAGAAGGGACGCAGATCCTCCTCTCCTCTCATCACCACAA-ACAGCTGAT---CTGAGTC
CACAGCAG-----AGCAC-----CATTCTTCTCTTCCATTCTACTCAACGCAAAGTCTC--CCGCT--GGTACGTTTGCT
TCCTTGCATTGCGTTGCGTTCGTC--TCCTCCTCCTCTTCCCCCTCATACTCTGCTCCGCCCAGATCTCCTCCACGCCG-
----------------CCGGGAGGGAGGTGGGGAGATCGCCCCAATATTCACTGCCAGGCCCCGACTAACATACTGTGCA
CTTCCATTTTCCGCAGATCAGATC----------GAGCGCTAGGCTGTCAGAT---------CCATCCATGGCCCCCTCC
CAAGAAGTCG------------CCGCCGCCACCAAGGAGCCGTCCACCAACGGCAACGGGACACA---------------
---GGCCGCCGCCGCCCCGAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGGTCGGTGG
CGGCGCACCCGTGGCACGACCTGGAGATCGGCCCGGACGCGCCCACAATCTTCAACTGC---------------------
------------------------------------------------------------------GTGATCGAGATCCC
CAAGGGGAGCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCCGGGTGCTTCCTCCGGGCCAAGGCCATCGGCCTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTGCCCCCGCACCGCCTCG
CCGAGATCAGAAGATTCTTCGAGGACTGTGAGTCATTGATGCCTCTGATCAGATCAGGTTAATTCGTCACAAGA------
------GAATGTGTTCCTGAT---------------------ATGTGTTTCTTTGATTTTGATTG--------ATT----
-GGGGAATTCATCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTCCCCATTCCCCGGTTTTCGATCCTCGATTCATGTCGAA----ACGCGATCAATTAGC
AAACCATTCAAAGTGATATATGC-------ATCCAACTGATGATGAACTTGCATAA-TTTTCCTTTTCAGGGATCTCTAT
GCCACCTACATCTGCGAGGGCCTGAGAAGGTAG-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr3A_1023
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------CCGCCATCACCAAGGACCCATCCACCAACGGCAACGGCAACGGCAACGG---CAACGG
CACAGCCGCACCCGCCCCCAAGACCAAGACGCCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCG
CCGCCCACCCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACAATCTTCAACTGC---------------------
------------------------------------------------------------------GTGATCGAGATCCC
CAAGGGGAGCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCGGGGTGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGCTCCCGCCCCACCGCCTCG
CCGAGATCAGGCGCTTCTTCGAGGACTGTAAGTCATTGATGCCTCTGAACTCTGA--------TCCTCAGAAGA------
------GAATGTGCTCCTGAATGTGTTTTCTTCTGTTCCTGAATGTGTTTCTCTGATT------G--------ATTGATT
GGGGAATTTCATCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTTCTCTCCTTCCTCCTCCACTACCAACATATGTGTTATTCACCACATGAGCAATTAGG
AACGAATTGTTTGAGTGGTACGC-------AATCGA-----GCCGATGTTGCGTCATTTTCGTTTTTCAGGGATCTTTAT
GCTACTTACATTGTGGAGGGCCTGAGAAGGTAGGAGGAGGAGGATGCTGCCTGATGGATGGTGATCTGGTGCTGCCTTGC
CACTTGCTGCAG--AACGATGTTGACGAAAAAATTGTGCCTCATAAACATACATACAATACATTCTTGTTCTGTTACATA
CATATAGTAGTATATGATGATGGAGCTACACCTCAT---AAACAGCCTTGATCAAGTCAGTGGTAGCCATATAAGG-AAG
TCACTCTTTTTCCATCTAGCTTATGTAATACGTTTTCCTGGCTGAATATGAGATGTTGGTATACTGTATTTTTT---CCC
CATTGCTAATCTCTGCTGAATCGTTTATTTCGTCGCATTAG-CCTGGCACTAAATGCTTGTGACCAACCGAGCCACGAGT
TAGAAAATGAATTTCCTATTTTACCAATGCAGATTCTGCAAA-------------------------------AAT----
---------------------------GTGCTCAGTGCTCTTTCCTTTTCCAGTTGTAAGT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTGCAAACCATCTCATCAGCAAACAATA
TG--TCTAGAGAAGTAACATACATCAATTGCTGTGGTGTGGTGCTATCTGTTGAGTGATGTGTG-CATTTTCTAGAATGC
CTAGAACTAGAATCACTTCACCAAAGTCAGATATTACTGACAAA
>chr3A_1061
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------AC---CAACGG---CAACGG
CACAGCCGCAACAGCCCCCAAGACCAAGACGTCGGCGCTGAACGAGCGGATCCTCTCCTCCATCACCCGCCGCTCCGTCG
CCGCCCACCCGTGGCACGACCTGGAGATCGGCCCCGACGCGCCCACAATCTTCAACTGC---------------------
------------------------------------------------------------------GTGATCGAGATCCC
CAAGGGGAGCAAGGTCAAGTAAGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGCATGCTCTACTCCTCCGTCG
TCTACTTGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCGGGGTGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGAGTTGCCTCCCCACCGGCTCG
CCAAAATCAGGCGATTCTTCGAAGACTGTAAGTCATTCATACTCCTGATCAGATCAGGTTAATTCGTCACAAGA------
------GAATGTGTT------------TTCTTTTGTTTCTGAATGTGTTTCTTTGATT--GATTG--------ATT----
-GGGGGAT---TCAGACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCGTCAGAGGTCGCCTACGAG
GCCATCCAGCACTCCATGTCAGTTCTCTCCTTCCTCCTCCACTACCAACATATGTGTTATTCACCACATGAGCAATTAGG
AACGAATTGTTTGAGTCATATGCAAATGCAATTGAGCTGATGTT------GGGTCG-TTTTCCTTTGTAGGGATCTTTAT
GCTACTTACATTGTCGAGGGCCTGAGAAGAT---AGGAGGAGGATGCTGCCTAATGGATGGTGATCTGGTGATG-CTTGC
CACCTGCTGCAGGAATCCATGTTGGCGAAAAAATTATGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr3D_1071
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------CCAACGG
CACGGCCGCACCAGCCCCCAAGACCAAGACCCCGGCGCTGAACGAGCGGATCCTCTCCTCGATCACGCGCCGGTCGGTGG
CGGCGCACCCGTGGCACGACCTGGAGATCGGCCCGGACGCTCCCACAATCTTCAACTGCGTAAGCACGCAACCTTCTTCT
TCCTCCTCCCGCCACCACCAATTCCGGCCGCCACGCAAACTAAATCATCTCCGCAACTCCGTGCAGGTGATCGAGATCCC
CAAGGGGAGCAAGGTCAAGTACGAGCTGGACAAGAAGACGGGGCTCATCAAGGTGGACCGGGTGCTCTACTCCTCCGTCG
TCTACCCGCACAACTACGGCTTCATCCCGCGCACCCTCTGCGACGACTCCGACCCCATCGACGTCCTCGTCATCATGCAG
GAGCCCGTCGTCCCCGGATGCTTCCTCCGCGCCAAGGCCATCGGACTCATGCCCATGATCGACCAGGGCGAGGCCGACGA
CAAGATCATCGCCGTCTGCGCCGACGACCCCGAGTACCGCCACTTCAACGACATCAAGGACCTCCCTCCCCACCGCCTCG
CAGAGATCAGGCGATTCTTCGAGGACTGTAAGTCATTGATGACTCTGATCAG-----GTTAATTCGTCAGAAGACAATGT
GCTCCTGAATGTGTT------------TTCCTCTGTTTCTGAATGTGTTTCTTTGATT------G--------ATT----
-TGGGGTT---TCAGACAAGAAGAACGAGAACAAGGAGGTTGCCGTCAACGACTTCCTGCCGTCAGAGGACGCCTACGAG
GCCATCCAGCACTCCATGTCAGTCCCCATTCCCCGGTTT----------ATTCATGTCGATCCA----------------
--TCG------AGTAATATATGC-------ATTGAACTGATATG------GCGTCA-TTTTATTTTTCAGGGATCTTTAT
GCTACTTACATTGTTGAGGGCCTGAGAAGGT---AGAAGGAGGATGCTGCCTGATGGATGCTGGTCTGGTGCTGCCTTGC
CACTTGCTGCAG--AACGATGTTGACGAAAAAATTATGCCTCATAAACATACATACAATACATTCTTGTTTTGTTACATA
CATATAGTAGTATATGATGATGGAGCTACACCTCATCTAAAACAGCCTTGATCAAGTCAGTAGTAGCCAGATAAAGAAAG
TCACTCCTTTTCCATCTAGCTTCTGTAATACGTTTTCCTGGCTGAATATGAGATGTTGGTATACTGTATTTTTTTTCCCC
CATTGCTAATCTCTGCCGAATCGTTTATTTCGTCGCACAAGCCCGGGCACTAAATACTTGTGACCGACCGAGCCACGAGT
TAGAAAATGAATTTCCTATTTTACCAGTGCAGATTCTGCAAA-------------------------------AATAAAC
GTTTGCCCTACCAGATAAGGTCAGAAAGTGCTCAGTGCTCTTTCCTTTTCCAGTTGTAAAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTGCAAACCATCTCACCAGCAAACAAAT
ATGCTCTAAAGAAGTAACATACATCAATGGTTGTGGTGTGGTGCTATCTGTTGAGCGATGTGTG-CATTTTCTGGAATGC
CTAGAACTAGAATCACTTCACCAAAGTCAGGTATTACTGAGAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------S-----------------------S---SSSSSSS-------------S
--------S---------------------------------S--------S---------------------S------
---------S--S-SSSS--------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------S---S---S--------SS------S------SS---------------
--------------------------------------------------------------S---------SS------
--S---S-S------------------------SS-SS----SS-S---S-S----S------------S-S-S------
-----SS-S-S--SSS-S--SSS--------------------------------------------------S------
-S---------------------------------------------------------S----S------S--------
----------S-S------------------------------------------------------S------------
---------------SSSS--SSSSS-S-----------------S----------------------------------
--------------------------------------------------------------------------------
------------S-------S---SS-SSSSSS-SS--SSS-S------------------------------S------
---------S-------------------------------------------------------------SS-------
------------------------------------S--S----------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-------------S---
----------------------------------------------S-------------------------S-------
-----------SS---------S-----S--S------------------------------------------------
----S-SS-------------------------------SS-S-S-SSS----------------------S--------
----------------S--------------------------------------S---S--SSSSSSS-----------
----------S-------------------S-------------S---------------S----------S--------
---------------------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------SS---------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
---------S-------------------S----------------------------------S------S--S-----
--------------------------------------------
>forward_729
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CAACACGCAGC
AAAGGGAAG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2920
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------TTCGTGGAGCCCTCACAAAA---------------------
--------------------------------------------------------------------------------
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--------------------------------------------
