Multiple sequence alignment - TraesCS3B01G610500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G610500 chr3B 100.000 3513 0 0 1 3513 829018680 829015168 0.000000e+00 6488
1 TraesCS3B01G610500 chr3D 85.766 2747 263 60 858 3513 611256506 611253797 0.000000e+00 2789
2 TraesCS3B01G610500 chr3D 91.949 236 19 0 384 619 611257004 611256769 7.270000e-87 331
3 TraesCS3B01G610500 chr3D 81.600 125 18 3 88 207 611257320 611257196 8.030000e-17 99
4 TraesCS3B01G610500 chr3A 85.418 1927 199 40 924 2808 746179277 746177391 0.000000e+00 1927
5 TraesCS3B01G610500 chr3A 88.717 709 44 16 2805 3504 746177354 746176673 0.000000e+00 833
6 TraesCS3B01G610500 chr3A 80.000 180 22 10 40 215 746180003 746179834 1.710000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G610500 chr3B 829015168 829018680 3512 True 6488.000000 6488 100.000000 1 3513 1 chr3B.!!$R1 3512
1 TraesCS3B01G610500 chr3D 611253797 611257320 3523 True 1073.000000 2789 86.438333 88 3513 3 chr3D.!!$R1 3425
2 TraesCS3B01G610500 chr3A 746176673 746180003 3330 True 960.333333 1927 84.711667 40 3504 3 chr3A.!!$R1 3464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 962 0.031585 GTTGAAAACTTGACCGGCCC 59.968 55.0 0.0 0.0 45.32 5.80 F
1744 1926 0.036388 ATTGTGTCCGGCTGTGTAGG 60.036 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2538 0.021610 GTACGACGATTTCACACGCG 59.978 55.0 3.53 3.53 36.1 6.01 R
3454 3746 0.335361 TAGGAGCCGGGTCTCTCTTT 59.665 55.0 31.09 13.38 33.7 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.366871 CGGCATTTCTCGACAACTCG 59.633 55.000 0.00 0.00 41.65 4.18
20 21 0.721718 GGCATTTCTCGACAACTCGG 59.278 55.000 0.00 0.00 40.58 4.63
21 22 1.671850 GGCATTTCTCGACAACTCGGA 60.672 52.381 0.00 0.00 40.58 4.55
22 23 1.390463 GCATTTCTCGACAACTCGGAC 59.610 52.381 0.00 0.00 40.58 4.79
23 24 1.993370 CATTTCTCGACAACTCGGACC 59.007 52.381 0.00 0.00 40.58 4.46
24 25 0.039798 TTTCTCGACAACTCGGACCG 60.040 55.000 7.84 7.84 40.58 4.79
25 26 0.886043 TTCTCGACAACTCGGACCGA 60.886 55.000 17.28 17.28 40.58 4.69
26 27 0.675837 TCTCGACAACTCGGACCGAT 60.676 55.000 18.71 1.34 40.58 4.18
27 28 0.248134 CTCGACAACTCGGACCGATC 60.248 60.000 18.71 11.10 40.58 3.69
28 29 0.675837 TCGACAACTCGGACCGATCT 60.676 55.000 18.71 4.39 40.58 2.75
29 30 0.248134 CGACAACTCGGACCGATCTC 60.248 60.000 18.71 8.41 36.16 2.75
30 31 0.248134 GACAACTCGGACCGATCTCG 60.248 60.000 18.71 8.26 34.61 4.04
31 32 1.586564 CAACTCGGACCGATCTCGC 60.587 63.158 18.71 0.00 34.61 5.03
32 33 1.749638 AACTCGGACCGATCTCGCT 60.750 57.895 18.71 0.00 34.61 4.93
33 34 1.716826 AACTCGGACCGATCTCGCTC 61.717 60.000 18.71 0.00 34.61 5.03
34 35 2.124860 TCGGACCGATCTCGCTCA 60.125 61.111 13.88 0.00 38.18 4.26
35 36 1.715862 CTCGGACCGATCTCGCTCAA 61.716 60.000 18.71 0.00 34.61 3.02
36 37 1.586564 CGGACCGATCTCGCTCAAC 60.587 63.158 8.64 0.00 38.18 3.18
37 38 1.227002 GGACCGATCTCGCTCAACC 60.227 63.158 0.00 0.00 38.18 3.77
38 39 1.586564 GACCGATCTCGCTCAACCG 60.587 63.158 0.00 0.00 38.18 4.44
70 71 3.718210 CTTACTCCGTGGGCTCCGC 62.718 68.421 0.00 0.00 0.00 5.54
81 82 4.654412 GCTCCGCTGATCGCCGAT 62.654 66.667 0.00 0.00 36.73 4.18
120 134 4.019681 CAGGTACTTTACAACCAGGGATCA 60.020 45.833 0.00 0.00 38.30 2.92
125 139 2.233605 TACAACCAGGGATCACGCCG 62.234 60.000 0.00 0.00 0.00 6.46
127 141 1.985662 AACCAGGGATCACGCCGTA 60.986 57.895 0.00 0.00 0.00 4.02
214 253 4.189580 CGGCCACGATTGGGGGAT 62.190 66.667 2.57 0.00 44.15 3.85
216 255 2.127232 GGCCACGATTGGGGGATTG 61.127 63.158 2.57 0.00 44.15 2.67
218 257 1.455587 CCACGATTGGGGGATTGGG 60.456 63.158 0.00 0.00 39.57 4.12
224 263 1.856920 GATTGGGGGATTGGGGAGTTA 59.143 52.381 0.00 0.00 0.00 2.24
226 265 2.009186 TGGGGGATTGGGGAGTTAAT 57.991 50.000 0.00 0.00 0.00 1.40
240 311 6.100714 TGGGGAGTTAATAAAGGGCTAGTAAG 59.899 42.308 0.00 0.00 0.00 2.34
241 312 6.100859 GGGGAGTTAATAAAGGGCTAGTAAGT 59.899 42.308 0.00 0.00 0.00 2.24
242 313 7.290948 GGGGAGTTAATAAAGGGCTAGTAAGTA 59.709 40.741 0.00 0.00 0.00 2.24
243 314 8.708378 GGGAGTTAATAAAGGGCTAGTAAGTAA 58.292 37.037 0.00 0.00 0.00 2.24
250 321 9.668497 AATAAAGGGCTAGTAAGTAAACTCTTG 57.332 33.333 0.00 0.00 0.00 3.02
254 325 4.326548 GGCTAGTAAGTAAACTCTTGTGCG 59.673 45.833 0.00 0.00 0.00 5.34
277 348 3.577415 CAGCAGGATAGATCATCACTGGA 59.423 47.826 16.10 0.00 34.78 3.86
293 406 4.100963 TCACTGGACAGAGTTTAGCAAGAA 59.899 41.667 6.29 0.00 0.00 2.52
305 418 5.940470 AGTTTAGCAAGAATAGAGTGGGTTG 59.060 40.000 0.00 0.00 0.00 3.77
306 419 2.716217 AGCAAGAATAGAGTGGGTTGC 58.284 47.619 0.00 0.00 40.45 4.17
309 422 3.623510 GCAAGAATAGAGTGGGTTGCTAC 59.376 47.826 0.00 0.00 37.80 3.58
310 423 4.624125 GCAAGAATAGAGTGGGTTGCTACT 60.624 45.833 0.00 0.00 37.80 2.57
355 470 2.358582 TCCGCTGATATGGCATTTGTTG 59.641 45.455 4.78 0.00 0.00 3.33
357 472 3.365832 CGCTGATATGGCATTTGTTGTC 58.634 45.455 4.78 0.00 0.00 3.18
358 473 3.065786 CGCTGATATGGCATTTGTTGTCT 59.934 43.478 4.78 0.00 0.00 3.41
360 475 5.413499 GCTGATATGGCATTTGTTGTCTTT 58.587 37.500 4.78 0.00 0.00 2.52
361 476 5.290158 GCTGATATGGCATTTGTTGTCTTTG 59.710 40.000 4.78 0.00 0.00 2.77
362 477 5.722263 TGATATGGCATTTGTTGTCTTTGG 58.278 37.500 4.78 0.00 0.00 3.28
363 478 5.245751 TGATATGGCATTTGTTGTCTTTGGT 59.754 36.000 4.78 0.00 0.00 3.67
364 479 3.176552 TGGCATTTGTTGTCTTTGGTG 57.823 42.857 0.00 0.00 0.00 4.17
365 480 2.499289 TGGCATTTGTTGTCTTTGGTGT 59.501 40.909 0.00 0.00 0.00 4.16
366 481 3.055530 TGGCATTTGTTGTCTTTGGTGTT 60.056 39.130 0.00 0.00 0.00 3.32
367 482 3.938334 GGCATTTGTTGTCTTTGGTGTTT 59.062 39.130 0.00 0.00 0.00 2.83
368 483 4.201802 GGCATTTGTTGTCTTTGGTGTTTG 60.202 41.667 0.00 0.00 0.00 2.93
369 484 4.629200 GCATTTGTTGTCTTTGGTGTTTGA 59.371 37.500 0.00 0.00 0.00 2.69
370 485 5.121454 GCATTTGTTGTCTTTGGTGTTTGAA 59.879 36.000 0.00 0.00 0.00 2.69
371 486 6.183360 GCATTTGTTGTCTTTGGTGTTTGAAT 60.183 34.615 0.00 0.00 0.00 2.57
372 487 7.626028 GCATTTGTTGTCTTTGGTGTTTGAATT 60.626 33.333 0.00 0.00 0.00 2.17
373 488 8.877779 CATTTGTTGTCTTTGGTGTTTGAATTA 58.122 29.630 0.00 0.00 0.00 1.40
374 489 8.472683 TTTGTTGTCTTTGGTGTTTGAATTAG 57.527 30.769 0.00 0.00 0.00 1.73
375 490 7.164230 TGTTGTCTTTGGTGTTTGAATTAGT 57.836 32.000 0.00 0.00 0.00 2.24
376 491 7.032580 TGTTGTCTTTGGTGTTTGAATTAGTG 58.967 34.615 0.00 0.00 0.00 2.74
377 492 6.142818 TGTCTTTGGTGTTTGAATTAGTGG 57.857 37.500 0.00 0.00 0.00 4.00
378 493 5.888724 TGTCTTTGGTGTTTGAATTAGTGGA 59.111 36.000 0.00 0.00 0.00 4.02
379 494 6.378564 TGTCTTTGGTGTTTGAATTAGTGGAA 59.621 34.615 0.00 0.00 0.00 3.53
380 495 6.695713 GTCTTTGGTGTTTGAATTAGTGGAAC 59.304 38.462 0.00 0.00 0.00 3.62
381 496 6.378564 TCTTTGGTGTTTGAATTAGTGGAACA 59.621 34.615 0.00 0.00 41.43 3.18
382 497 6.723298 TTGGTGTTTGAATTAGTGGAACAT 57.277 33.333 0.00 0.00 44.52 2.71
397 512 4.700213 GTGGAACATGGTTGCTATGTACTT 59.300 41.667 0.00 0.00 44.52 2.24
407 522 5.874810 GGTTGCTATGTACTTGATCTGTTCA 59.125 40.000 0.00 0.00 0.00 3.18
411 526 6.591448 TGCTATGTACTTGATCTGTTCAACTG 59.409 38.462 0.00 0.00 39.44 3.16
441 556 4.536065 TCATCATGCAAAACTCGTTTCAC 58.464 39.130 0.00 0.00 31.45 3.18
489 604 1.094785 CAAGTTGGCCGGTAATCTGG 58.905 55.000 1.90 0.00 42.72 3.86
519 634 1.663135 GGCACTTCTCATCGCTTCTTC 59.337 52.381 0.00 0.00 0.00 2.87
523 638 3.611986 CACTTCTCATCGCTTCTTCTGAC 59.388 47.826 0.00 0.00 0.00 3.51
536 651 3.754965 TCTTCTGACCCCTCAAATGTTG 58.245 45.455 0.00 0.00 0.00 3.33
553 668 8.877779 TCAAATGTTGTAACCACAAGAAAAATG 58.122 29.630 0.00 0.00 45.18 2.32
557 672 8.864069 TGTTGTAACCACAAGAAAAATGTATG 57.136 30.769 0.00 0.00 45.18 2.39
575 690 1.040893 TGTCCGTCCACAGTCACACT 61.041 55.000 0.00 0.00 0.00 3.55
578 693 0.937304 CCGTCCACAGTCACACTTTG 59.063 55.000 0.00 0.00 0.00 2.77
597 712 9.357161 ACACTTTGGTGATAACCATAAACTTTA 57.643 29.630 1.60 0.00 45.61 1.85
598 713 9.620660 CACTTTGGTGATAACCATAAACTTTAC 57.379 33.333 1.60 0.00 45.61 2.01
599 714 9.357161 ACTTTGGTGATAACCATAAACTTTACA 57.643 29.630 1.60 0.00 39.86 2.41
603 761 9.747898 TGGTGATAACCATAAACTTTACAGATT 57.252 29.630 0.00 0.00 34.33 2.40
642 800 8.674263 TTGCATTCTTGTTTTTGGTATTTGAT 57.326 26.923 0.00 0.00 0.00 2.57
644 802 9.118300 TGCATTCTTGTTTTTGGTATTTGATTT 57.882 25.926 0.00 0.00 0.00 2.17
645 803 9.384682 GCATTCTTGTTTTTGGTATTTGATTTG 57.615 29.630 0.00 0.00 0.00 2.32
680 839 5.565439 GCATGGTTGCTAATGTCTTTCTGTT 60.565 40.000 0.00 0.00 45.77 3.16
693 852 5.066375 TGTCTTTCTGTTTGTCCTTGATGTG 59.934 40.000 0.00 0.00 0.00 3.21
752 914 9.231297 TCATCTTAACTTCTTTTGGTTATGAGG 57.769 33.333 0.00 0.00 36.37 3.86
754 916 8.617290 TCTTAACTTCTTTTGGTTATGAGGTC 57.383 34.615 0.00 0.00 32.36 3.85
785 947 5.843673 TTGGCAAATGACAAGTTAGTTGA 57.156 34.783 6.80 0.00 38.31 3.18
789 951 7.064016 TTGGCAAATGACAAGTTAGTTGAAAAC 59.936 33.333 6.80 0.00 42.42 2.43
800 962 0.031585 GTTGAAAACTTGACCGGCCC 59.968 55.000 0.00 0.00 45.32 5.80
803 965 1.228459 AAAACTTGACCGGCCCCTC 60.228 57.895 0.00 0.00 0.00 4.30
817 990 1.210478 GCCCCTCTGCTTCTTATGACA 59.790 52.381 0.00 0.00 0.00 3.58
819 992 2.420687 CCCCTCTGCTTCTTATGACACC 60.421 54.545 0.00 0.00 0.00 4.16
821 994 3.431486 CCCTCTGCTTCTTATGACACCTC 60.431 52.174 0.00 0.00 0.00 3.85
824 997 3.509967 TCTGCTTCTTATGACACCTCGAA 59.490 43.478 0.00 0.00 0.00 3.71
826 999 4.183865 TGCTTCTTATGACACCTCGAATG 58.816 43.478 0.00 0.00 0.00 2.67
833 1006 8.786826 TCTTATGACACCTCGAATGTATTTTT 57.213 30.769 2.11 0.00 0.00 1.94
834 1007 9.878667 TCTTATGACACCTCGAATGTATTTTTA 57.121 29.630 2.11 0.00 0.00 1.52
841 1014 9.634163 ACACCTCGAATGTATTTTTATTTTTCC 57.366 29.630 0.19 0.00 0.00 3.13
842 1015 8.794406 CACCTCGAATGTATTTTTATTTTTCCG 58.206 33.333 0.00 0.00 0.00 4.30
843 1016 7.971722 ACCTCGAATGTATTTTTATTTTTCCGG 59.028 33.333 0.00 0.00 0.00 5.14
844 1017 7.434013 CCTCGAATGTATTTTTATTTTTCCGGG 59.566 37.037 0.00 0.00 0.00 5.73
846 1019 8.521176 TCGAATGTATTTTTATTTTTCCGGGAA 58.479 29.630 5.09 5.09 0.00 3.97
892 1065 7.770433 CACAGGAAAATAATATCTCTGTCCACA 59.230 37.037 0.00 0.00 32.51 4.17
901 1074 3.223674 TCTCTGTCCACAGTCACACTA 57.776 47.619 6.61 0.00 44.12 2.74
904 1077 3.496331 TCTGTCCACAGTCACACTATGA 58.504 45.455 6.61 0.00 44.12 2.15
909 1082 5.656416 TGTCCACAGTCACACTATGATGATA 59.344 40.000 0.00 0.00 40.28 2.15
910 1083 6.183360 TGTCCACAGTCACACTATGATGATAG 60.183 42.308 0.00 0.00 40.28 2.08
911 1084 6.039829 GTCCACAGTCACACTATGATGATAGA 59.960 42.308 6.17 0.00 40.28 1.98
912 1085 6.779539 TCCACAGTCACACTATGATGATAGAT 59.220 38.462 6.17 0.00 40.28 1.98
914 1087 8.579863 CCACAGTCACACTATGATGATAGATAA 58.420 37.037 6.17 0.00 40.28 1.75
915 1088 9.404348 CACAGTCACACTATGATGATAGATAAC 57.596 37.037 6.17 0.00 40.28 1.89
917 1090 8.579863 CAGTCACACTATGATGATAGATAACCA 58.420 37.037 6.17 0.00 40.28 3.67
918 1091 9.319060 AGTCACACTATGATGATAGATAACCAT 57.681 33.333 6.17 0.00 40.28 3.55
919 1092 9.935241 GTCACACTATGATGATAGATAACCATT 57.065 33.333 6.17 0.00 40.28 3.16
920 1093 9.933723 TCACACTATGATGATAGATAACCATTG 57.066 33.333 6.17 0.00 35.90 2.82
921 1094 9.933723 CACACTATGATGATAGATAACCATTGA 57.066 33.333 6.17 0.00 35.90 2.57
939 1112 7.651808 ACCATTGATTTTATCGATTGATGACC 58.348 34.615 1.71 0.00 35.99 4.02
950 1123 3.871594 CGATTGATGACCCTGTAGTTTCC 59.128 47.826 0.00 0.00 0.00 3.13
957 1130 3.521531 TGACCCTGTAGTTTCCATGCATA 59.478 43.478 0.00 0.00 0.00 3.14
960 1134 3.371487 CCCTGTAGTTTCCATGCATACCA 60.371 47.826 0.00 0.00 0.00 3.25
969 1143 7.517320 AGTTTCCATGCATACCACTAATATCA 58.483 34.615 0.00 0.00 0.00 2.15
974 1148 8.655901 TCCATGCATACCACTAATATCAAACTA 58.344 33.333 0.00 0.00 0.00 2.24
976 1150 9.494271 CATGCATACCACTAATATCAAACTACT 57.506 33.333 0.00 0.00 0.00 2.57
993 1167 4.770795 ACTACTTTCTTGCAGTGACAAGT 58.229 39.130 19.81 15.69 45.86 3.16
998 1172 3.266510 TCTTGCAGTGACAAGTGACTT 57.733 42.857 19.81 0.00 45.86 3.01
999 1173 3.609853 TCTTGCAGTGACAAGTGACTTT 58.390 40.909 19.81 0.00 45.86 2.66
1016 1190 4.462483 TGACTTTATGGGTGATTTGGCTTC 59.538 41.667 0.00 0.00 0.00 3.86
1028 1202 6.449698 GTGATTTGGCTTCTGATTCTGAAAA 58.550 36.000 7.31 0.51 0.00 2.29
1030 1204 7.601508 GTGATTTGGCTTCTGATTCTGAAAAAT 59.398 33.333 11.25 11.25 0.00 1.82
1032 1206 9.643693 GATTTGGCTTCTGATTCTGAAAAATTA 57.356 29.630 12.09 0.81 0.00 1.40
1034 1208 6.924111 TGGCTTCTGATTCTGAAAAATTACC 58.076 36.000 7.31 3.96 0.00 2.85
1051 1225 4.043859 CCATGGAGGGTCACGGTA 57.956 61.111 5.56 0.00 0.00 4.02
1052 1226 2.528134 CCATGGAGGGTCACGGTAT 58.472 57.895 5.56 0.00 0.00 2.73
1053 1227 0.106708 CCATGGAGGGTCACGGTATG 59.893 60.000 5.56 0.00 0.00 2.39
1077 1251 4.467438 TCTTCTGTCTGCAAGGATGACATA 59.533 41.667 6.23 0.00 39.55 2.29
1079 1253 2.871022 CTGTCTGCAAGGATGACATAGC 59.129 50.000 6.23 0.00 39.55 2.97
1125 1299 4.329545 GGGCAGGCTCCACGTTCA 62.330 66.667 0.00 0.00 0.00 3.18
1139 1313 1.140052 ACGTTCATGTGTGGAACTCCA 59.860 47.619 0.00 0.00 45.30 3.86
1150 1324 2.763039 TGGAACTCCATCATAGCCAGA 58.237 47.619 0.00 0.00 42.01 3.86
1152 1326 3.523157 TGGAACTCCATCATAGCCAGAAA 59.477 43.478 0.00 0.00 42.01 2.52
1169 1343 5.335976 GCCAGAAAGGAACTCATAAACAAGG 60.336 44.000 0.00 0.00 38.49 3.61
1170 1344 5.335976 CCAGAAAGGAACTCATAAACAAGGC 60.336 44.000 0.00 0.00 38.49 4.35
1178 1352 3.010584 ACTCATAAACAAGGCAGGGATGT 59.989 43.478 0.00 0.00 0.00 3.06
1191 1365 2.821969 CAGGGATGTTGGTTCTTTGGAG 59.178 50.000 0.00 0.00 0.00 3.86
1200 1374 3.808728 TGGTTCTTTGGAGACTGAAGTG 58.191 45.455 0.00 0.00 0.00 3.16
1206 1380 5.087323 TCTTTGGAGACTGAAGTGGATACT 58.913 41.667 0.00 0.00 39.32 2.12
1256 1430 0.394899 GGCAAAGGAGGTGATGGGAG 60.395 60.000 0.00 0.00 0.00 4.30
1280 1454 2.963101 CCCATGCAATCTCCAATCACAT 59.037 45.455 0.00 0.00 0.00 3.21
1292 1466 4.478203 TCCAATCACATTGAACCAAAGGA 58.522 39.130 0.00 0.00 42.83 3.36
1293 1467 4.898265 TCCAATCACATTGAACCAAAGGAA 59.102 37.500 0.00 0.00 42.83 3.36
1311 1485 5.091261 AGGAATCTTCAACTTATGAGCGT 57.909 39.130 0.00 0.00 39.77 5.07
1313 1487 5.582665 AGGAATCTTCAACTTATGAGCGTTC 59.417 40.000 0.00 0.00 39.77 3.95
1315 1489 3.909430 TCTTCAACTTATGAGCGTTCGT 58.091 40.909 0.00 0.00 39.77 3.85
1340 1514 2.884639 CCTTTCCGGTGAGTTCAACATT 59.115 45.455 0.00 0.00 31.75 2.71
1344 1518 6.452494 TTTCCGGTGAGTTCAACATTTTAA 57.548 33.333 0.00 0.00 31.75 1.52
1346 1520 5.823353 TCCGGTGAGTTCAACATTTTAAAC 58.177 37.500 0.00 0.00 31.75 2.01
1347 1521 4.979815 CCGGTGAGTTCAACATTTTAAACC 59.020 41.667 0.00 0.00 31.75 3.27
1352 1526 6.701400 GTGAGTTCAACATTTTAAACCATGCT 59.299 34.615 0.00 0.00 0.00 3.79
1353 1527 7.224557 GTGAGTTCAACATTTTAAACCATGCTT 59.775 33.333 0.00 0.00 0.00 3.91
1369 1543 3.354089 TGCTTTGTTTGCTTCAGCTAC 57.646 42.857 0.00 0.00 42.66 3.58
1373 1547 1.234615 TGTTTGCTTCAGCTACGCCC 61.235 55.000 0.00 0.00 42.66 6.13
1374 1548 1.072332 TTTGCTTCAGCTACGCCCA 59.928 52.632 0.00 0.00 42.66 5.36
1375 1549 0.322456 TTTGCTTCAGCTACGCCCAT 60.322 50.000 0.00 0.00 42.66 4.00
1402 1576 6.836577 GCTTTTAGCATACTCTGTTAGAGG 57.163 41.667 10.31 0.00 42.98 3.69
1403 1577 6.574350 GCTTTTAGCATACTCTGTTAGAGGA 58.426 40.000 10.31 2.00 42.98 3.71
1404 1578 7.042335 GCTTTTAGCATACTCTGTTAGAGGAA 58.958 38.462 10.31 0.00 38.97 3.36
1411 1585 7.447238 AGCATACTCTGTTAGAGGAAGTATCTC 59.553 40.741 10.31 0.00 46.45 2.75
1421 1595 9.303116 GTTAGAGGAAGTATCTCTATGAATGGA 57.697 37.037 0.00 0.00 41.69 3.41
1422 1596 9.883293 TTAGAGGAAGTATCTCTATGAATGGAA 57.117 33.333 0.00 0.00 41.69 3.53
1425 1599 9.487790 GAGGAAGTATCTCTATGAATGGAAAAG 57.512 37.037 0.00 0.00 0.00 2.27
1432 1606 1.185315 ATGAATGGAAAAGGGGTGCG 58.815 50.000 0.00 0.00 0.00 5.34
1434 1608 0.526211 GAATGGAAAAGGGGTGCGTC 59.474 55.000 0.00 0.00 0.00 5.19
1437 1611 1.971695 GGAAAAGGGGTGCGTCAGG 60.972 63.158 0.00 0.00 0.00 3.86
1441 1615 2.397413 AAAGGGGTGCGTCAGGTCTG 62.397 60.000 0.00 0.00 0.00 3.51
1452 1626 0.471022 TCAGGTCTGGTGTAGCCACA 60.471 55.000 0.00 0.00 43.61 4.17
1453 1627 0.615331 CAGGTCTGGTGTAGCCACAT 59.385 55.000 0.00 0.00 43.61 3.21
1454 1628 0.905357 AGGTCTGGTGTAGCCACATC 59.095 55.000 0.00 0.00 43.61 3.06
1460 1634 3.780294 TCTGGTGTAGCCACATCCTAAAT 59.220 43.478 0.00 0.00 43.61 1.40
1466 1640 7.364795 GGTGTAGCCACATCCTAAATGGAAAT 61.365 42.308 0.00 0.00 42.40 2.17
1487 1661 2.431954 ATGAATGGCACCAGGAAGAG 57.568 50.000 0.00 0.00 0.00 2.85
1518 1692 8.853077 TTCTTGCTATAATATCCTGACATTGG 57.147 34.615 0.00 0.00 0.00 3.16
1524 1698 8.515414 GCTATAATATCCTGACATTGGTTTTCC 58.485 37.037 0.00 0.00 41.14 3.13
1536 1710 7.070571 TGACATTGGTTTTCCTAGGTGAAAAAT 59.929 33.333 9.08 6.58 43.64 1.82
1546 1722 6.977213 TCCTAGGTGAAAAATGTTTAGCAAC 58.023 36.000 9.08 0.00 0.00 4.17
1559 1735 3.369546 TTAGCAACTTCAAAAGGCAGC 57.630 42.857 0.00 0.00 0.00 5.25
1560 1736 1.113788 AGCAACTTCAAAAGGCAGCA 58.886 45.000 0.00 0.00 0.00 4.41
1575 1751 4.280819 AGGCAGCAATAATATGTTGTGGT 58.719 39.130 0.00 0.00 34.42 4.16
1578 1754 5.067153 GGCAGCAATAATATGTTGTGGTGTA 59.933 40.000 15.94 0.00 34.42 2.90
1602 1778 0.612174 TAGCCTCTCAGCCGTGTTCT 60.612 55.000 0.00 0.00 0.00 3.01
1634 1810 3.638160 ACATGTTTCACCTGTCTGCATTT 59.362 39.130 0.00 0.00 0.00 2.32
1638 1814 2.885135 TCACCTGTCTGCATTTGGAT 57.115 45.000 0.00 0.00 0.00 3.41
1642 1818 2.827921 ACCTGTCTGCATTTGGATTTCC 59.172 45.455 0.00 0.00 0.00 3.13
1643 1819 2.827322 CCTGTCTGCATTTGGATTTCCA 59.173 45.455 0.00 0.00 45.94 3.53
1677 1859 4.717233 TTGATGTGACCATGCCATTTAC 57.283 40.909 0.00 0.00 0.00 2.01
1702 1884 5.402054 TTCAGTTCCCAGGCCAATTATAT 57.598 39.130 5.01 0.00 0.00 0.86
1703 1885 4.728772 TCAGTTCCCAGGCCAATTATATG 58.271 43.478 5.01 0.00 0.00 1.78
1718 1900 8.090214 GCCAATTATATGATTTGTTGTGCCTAT 58.910 33.333 0.00 0.00 0.00 2.57
1734 1916 4.034048 GTGCCTATTGAGTTATTGTGTCCG 59.966 45.833 0.00 0.00 0.00 4.79
1740 1922 1.732259 GAGTTATTGTGTCCGGCTGTG 59.268 52.381 0.00 0.00 0.00 3.66
1741 1923 1.071699 AGTTATTGTGTCCGGCTGTGT 59.928 47.619 0.00 0.00 0.00 3.72
1742 1924 2.300723 AGTTATTGTGTCCGGCTGTGTA 59.699 45.455 0.00 0.00 0.00 2.90
1743 1925 2.665649 TATTGTGTCCGGCTGTGTAG 57.334 50.000 0.00 0.00 0.00 2.74
1744 1926 0.036388 ATTGTGTCCGGCTGTGTAGG 60.036 55.000 0.00 0.00 0.00 3.18
1745 1927 2.434359 GTGTCCGGCTGTGTAGGC 60.434 66.667 0.00 0.00 45.44 3.93
1746 1928 2.603473 TGTCCGGCTGTGTAGGCT 60.603 61.111 0.00 0.00 46.62 4.58
1747 1929 2.125512 GTCCGGCTGTGTAGGCTG 60.126 66.667 0.00 0.00 46.62 4.85
1799 1985 7.510549 TGAATGAGCTAAGCTTAAACTTGTT 57.489 32.000 7.74 7.05 39.88 2.83
1844 2030 2.147150 GCTGAGTTCAGTTCTGTTCCC 58.853 52.381 10.57 0.00 45.45 3.97
1846 2032 3.808618 GCTGAGTTCAGTTCTGTTCCCAT 60.809 47.826 10.57 0.00 45.45 4.00
1847 2033 4.392940 CTGAGTTCAGTTCTGTTCCCATT 58.607 43.478 0.91 0.00 39.09 3.16
1852 2038 2.886523 TCAGTTCTGTTCCCATTTGCTG 59.113 45.455 0.00 0.00 0.00 4.41
1854 2040 3.820467 CAGTTCTGTTCCCATTTGCTGTA 59.180 43.478 0.00 0.00 0.00 2.74
1857 2043 4.098914 TCTGTTCCCATTTGCTGTAGTT 57.901 40.909 0.00 0.00 0.00 2.24
1871 2074 8.610248 TTTGCTGTAGTTGTACATTTAAGCTA 57.390 30.769 14.98 8.14 38.51 3.32
1875 2078 6.942976 TGTAGTTGTACATTTAAGCTAGGCT 58.057 36.000 0.00 0.00 35.69 4.58
1911 2114 8.623903 TGATGATACTGTAATCAAGGAAAATGC 58.376 33.333 0.80 0.00 39.25 3.56
1912 2115 7.936496 TGATACTGTAATCAAGGAAAATGCA 57.064 32.000 0.00 0.00 32.97 3.96
1920 2139 9.023962 TGTAATCAAGGAAAATGCACTTTATCT 57.976 29.630 0.00 0.00 0.00 1.98
1927 2146 5.934043 GGAAAATGCACTTTATCTTTGCCTT 59.066 36.000 0.00 0.00 35.26 4.35
1928 2147 6.128472 GGAAAATGCACTTTATCTTTGCCTTG 60.128 38.462 0.00 0.00 35.26 3.61
1931 2150 3.321682 TGCACTTTATCTTTGCCTTGCTT 59.678 39.130 0.00 0.00 35.26 3.91
1932 2151 3.922850 GCACTTTATCTTTGCCTTGCTTC 59.077 43.478 0.00 0.00 0.00 3.86
1933 2152 4.161333 CACTTTATCTTTGCCTTGCTTCG 58.839 43.478 0.00 0.00 0.00 3.79
1934 2153 3.191371 ACTTTATCTTTGCCTTGCTTCGG 59.809 43.478 0.00 0.00 0.00 4.30
1935 2154 2.779755 TATCTTTGCCTTGCTTCGGA 57.220 45.000 0.00 0.00 0.00 4.55
1936 2155 2.134789 ATCTTTGCCTTGCTTCGGAT 57.865 45.000 0.00 0.00 0.00 4.18
1937 2156 1.453155 TCTTTGCCTTGCTTCGGATC 58.547 50.000 0.00 0.00 0.00 3.36
1938 2157 1.167851 CTTTGCCTTGCTTCGGATCA 58.832 50.000 0.00 0.00 0.00 2.92
1939 2158 1.747355 CTTTGCCTTGCTTCGGATCAT 59.253 47.619 0.00 0.00 0.00 2.45
1940 2159 1.838112 TTGCCTTGCTTCGGATCATT 58.162 45.000 0.00 0.00 0.00 2.57
1941 2160 1.838112 TGCCTTGCTTCGGATCATTT 58.162 45.000 0.00 0.00 0.00 2.32
1942 2161 2.997980 TGCCTTGCTTCGGATCATTTA 58.002 42.857 0.00 0.00 0.00 1.40
1943 2162 3.554934 TGCCTTGCTTCGGATCATTTAT 58.445 40.909 0.00 0.00 0.00 1.40
1944 2163 4.713553 TGCCTTGCTTCGGATCATTTATA 58.286 39.130 0.00 0.00 0.00 0.98
1950 2169 6.785488 TGCTTCGGATCATTTATACACATC 57.215 37.500 0.00 0.00 0.00 3.06
2022 2241 0.543174 AAGGAGGCCGTGAGAGAAGT 60.543 55.000 0.00 0.00 0.00 3.01
2029 2251 1.540363 GCCGTGAGAGAAGTGGTGAAA 60.540 52.381 0.00 0.00 0.00 2.69
2045 2267 1.202758 TGAAACATCGCCAACTGGAGT 60.203 47.619 0.00 0.00 37.39 3.85
2055 2277 2.803817 AACTGGAGTCCGCCACGTT 61.804 57.895 4.30 0.12 33.52 3.99
2073 2295 1.756538 GTTAATTGGGCCCCAGATGTG 59.243 52.381 22.27 0.00 33.81 3.21
2190 2412 1.068194 CAGAAGAAGAGGAAGTCGCGT 60.068 52.381 5.77 0.00 0.00 6.01
2197 2419 2.029964 GGAAGTCGCGTGGGAACA 59.970 61.111 5.77 0.00 38.70 3.18
2207 2429 1.151668 CGTGGGAACAGCAAGAAGAG 58.848 55.000 0.00 0.00 44.46 2.85
2208 2430 0.877743 GTGGGAACAGCAAGAAGAGC 59.122 55.000 0.00 0.00 44.46 4.09
2209 2431 0.603707 TGGGAACAGCAAGAAGAGCG 60.604 55.000 0.00 0.00 37.01 5.03
2271 2496 1.376812 GCCCGGGTAAGACCACAAG 60.377 63.158 24.63 0.00 41.02 3.16
2280 2505 3.252458 GGTAAGACCACAAGCATTTCGTT 59.748 43.478 0.00 0.00 38.42 3.85
2313 2538 1.464997 GTTCCACGCTTCAGGAATCAC 59.535 52.381 0.00 0.00 44.98 3.06
2359 2584 1.065854 AGACATTTTCTCCTCAGGCCG 60.066 52.381 0.00 0.00 0.00 6.13
2368 2593 3.764466 CTCAGGCCGTCTTCGCCT 61.764 66.667 0.00 0.00 41.50 5.52
2371 2596 3.311110 AGGCCGTCTTCGCCTGAA 61.311 61.111 0.00 0.00 40.19 3.02
2386 2611 3.828875 CCTGAAGAACTAGGCTTAGGG 57.171 52.381 7.87 0.25 0.00 3.53
2655 2890 3.739209 GCTTTTGGCTGGCATCCTTTATC 60.739 47.826 9.07 0.00 38.06 1.75
2696 2931 0.589729 CACGTTGTGTGCTGCTGTTC 60.590 55.000 0.00 0.00 42.70 3.18
2716 2951 1.289109 CGTTTGTAGCCACGGACTGG 61.289 60.000 0.00 0.00 44.08 4.00
2746 2981 8.703378 ATCTGAGAATAATTGAATCCCCTTTC 57.297 34.615 0.00 0.00 0.00 2.62
2760 2995 2.770164 CCTTTCGAGGGAGTTGTCAT 57.230 50.000 0.84 0.00 0.00 3.06
2761 2996 2.622436 CCTTTCGAGGGAGTTGTCATC 58.378 52.381 0.84 0.00 0.00 2.92
2762 2997 2.622436 CTTTCGAGGGAGTTGTCATCC 58.378 52.381 0.00 0.00 35.99 3.51
2763 2998 1.639722 TTCGAGGGAGTTGTCATCCA 58.360 50.000 0.00 0.00 38.70 3.41
2784 3020 6.064060 TCCATTGTGCTAATCTTATCTTGGG 58.936 40.000 0.00 0.00 0.00 4.12
2789 3025 5.045213 TGTGCTAATCTTATCTTGGGTCCAA 60.045 40.000 2.18 2.18 0.00 3.53
2796 3032 5.439721 TCTTATCTTGGGTCCAATGTCATG 58.560 41.667 2.59 0.00 35.20 3.07
2857 3136 1.338579 GGCAGACTGTTGAGCTAGCTT 60.339 52.381 20.42 0.32 0.00 3.74
2892 3171 2.690653 AAAGCGGCAAGGCTGGTGTA 62.691 55.000 1.45 0.00 45.32 2.90
2924 3203 1.661112 GAGGAACGAAGCTCAAATCCG 59.339 52.381 0.00 0.00 32.22 4.18
2953 3232 1.704070 GAGCATTGATCCCTCCCTCAT 59.296 52.381 0.00 0.00 0.00 2.90
3038 3323 4.504916 CTCGCCGTCTCTGCCCTG 62.505 72.222 0.00 0.00 0.00 4.45
3175 3463 7.613022 GGGTGCAGGTACACTATACTGTATATA 59.387 40.741 7.91 0.00 40.52 0.86
3314 3602 1.881324 GGCTCGTCCATCTAGAGGTAC 59.119 57.143 3.36 0.00 32.96 3.34
3315 3603 1.881324 GCTCGTCCATCTAGAGGTACC 59.119 57.143 2.73 2.73 32.96 3.34
3332 3620 1.713297 ACCTACCGTACCATCCATCC 58.287 55.000 0.00 0.00 0.00 3.51
3343 3631 6.183360 CCGTACCATCCATCCATTATGCTATA 60.183 42.308 0.00 0.00 33.92 1.31
3388 3680 6.664816 TCCATTTTCATGAGTTAGGCAAATCT 59.335 34.615 0.00 0.00 31.07 2.40
3410 3702 5.830991 TCTAATTAGCCGCCACCAAAAATAT 59.169 36.000 7.67 0.00 0.00 1.28
3411 3703 6.999272 TCTAATTAGCCGCCACCAAAAATATA 59.001 34.615 7.67 0.00 0.00 0.86
3412 3704 5.705609 ATTAGCCGCCACCAAAAATATAG 57.294 39.130 0.00 0.00 0.00 1.31
3454 3746 7.048629 TCATAACCAAAATCTGCTTTGACAA 57.951 32.000 0.00 0.00 38.35 3.18
3507 3800 0.035152 CAAGCACATGCCTCCCTGTA 60.035 55.000 0.00 0.00 43.38 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.248134 GAGATCGGTCCGAGTTGTCG 60.248 60.000 20.50 0.00 46.39 4.35
11 12 0.248134 CGAGATCGGTCCGAGTTGTC 60.248 60.000 20.50 12.08 39.91 3.18
12 13 1.801332 CGAGATCGGTCCGAGTTGT 59.199 57.895 20.50 1.90 39.91 3.32
13 14 1.586564 GCGAGATCGGTCCGAGTTG 60.587 63.158 20.50 13.76 39.91 3.16
14 15 2.799371 GCGAGATCGGTCCGAGTT 59.201 61.111 20.50 10.05 39.91 3.01
22 23 2.956964 GCGGTTGAGCGAGATCGG 60.957 66.667 6.79 0.00 40.23 4.18
31 32 4.143333 ATCCGGTCCGCGGTTGAG 62.143 66.667 27.15 14.76 0.00 3.02
32 33 4.137872 GATCCGGTCCGCGGTTGA 62.138 66.667 27.15 17.13 0.00 3.18
33 34 4.143333 AGATCCGGTCCGCGGTTG 62.143 66.667 27.15 15.70 0.00 3.77
34 35 4.143333 CAGATCCGGTCCGCGGTT 62.143 66.667 27.15 4.05 0.00 4.44
37 38 3.133767 TAAGCAGATCCGGTCCGCG 62.134 63.158 5.50 0.00 35.35 6.46
38 39 1.591863 GTAAGCAGATCCGGTCCGC 60.592 63.158 5.50 2.58 0.00 5.54
81 82 0.321387 CCTGAGCTGCTGAGAAGCAA 60.321 55.000 17.94 1.10 44.88 3.91
140 154 2.512515 GATCGCTCACCCTGTGGC 60.513 66.667 0.00 0.00 33.87 5.01
141 155 2.187946 GGATCGCTCACCCTGTGG 59.812 66.667 0.00 0.00 33.87 4.17
147 161 3.474570 AGGGCAGGATCGCTCACC 61.475 66.667 0.00 0.00 33.54 4.02
148 162 2.202987 CAGGGCAGGATCGCTCAC 60.203 66.667 0.00 0.00 33.54 3.51
151 165 1.377725 CAAACAGGGCAGGATCGCT 60.378 57.895 0.00 0.00 0.00 4.93
209 228 4.480115 CCTTTATTAACTCCCCAATCCCC 58.520 47.826 0.00 0.00 0.00 4.81
210 249 4.480115 CCCTTTATTAACTCCCCAATCCC 58.520 47.826 0.00 0.00 0.00 3.85
211 250 3.895656 GCCCTTTATTAACTCCCCAATCC 59.104 47.826 0.00 0.00 0.00 3.01
212 251 4.804597 AGCCCTTTATTAACTCCCCAATC 58.195 43.478 0.00 0.00 0.00 2.67
214 253 4.791880 ACTAGCCCTTTATTAACTCCCCAA 59.208 41.667 0.00 0.00 0.00 4.12
216 255 6.100859 ACTTACTAGCCCTTTATTAACTCCCC 59.899 42.308 0.00 0.00 0.00 4.81
224 263 9.668497 CAAGAGTTTACTTACTAGCCCTTTATT 57.332 33.333 0.00 0.00 0.00 1.40
226 265 8.092687 CACAAGAGTTTACTTACTAGCCCTTTA 58.907 37.037 0.00 0.00 0.00 1.85
240 311 0.586319 TGCTGCGCACAAGAGTTTAC 59.414 50.000 5.66 0.00 31.71 2.01
241 312 0.867746 CTGCTGCGCACAAGAGTTTA 59.132 50.000 5.66 0.00 33.79 2.01
242 313 1.650912 CTGCTGCGCACAAGAGTTT 59.349 52.632 5.66 0.00 33.79 2.66
243 314 2.256591 CCTGCTGCGCACAAGAGTT 61.257 57.895 5.66 0.00 33.79 3.01
250 321 0.249615 TGATCTATCCTGCTGCGCAC 60.250 55.000 5.66 4.25 33.79 5.34
254 325 3.327626 CAGTGATGATCTATCCTGCTGC 58.672 50.000 0.00 0.00 34.77 5.25
265 336 4.808364 GCTAAACTCTGTCCAGTGATGATC 59.192 45.833 3.57 0.00 0.00 2.92
277 348 6.402222 CCACTCTATTCTTGCTAAACTCTGT 58.598 40.000 0.00 0.00 0.00 3.41
293 406 1.486726 GCCAGTAGCAACCCACTCTAT 59.513 52.381 0.00 0.00 42.97 1.98
305 418 4.708726 AAATCTGTGAAATGCCAGTAGC 57.291 40.909 0.00 0.00 44.14 3.58
346 461 4.629200 TCAAACACCAAAGACAACAAATGC 59.371 37.500 0.00 0.00 0.00 3.56
347 462 6.718454 TTCAAACACCAAAGACAACAAATG 57.282 33.333 0.00 0.00 0.00 2.32
350 465 7.543868 CACTAATTCAAACACCAAAGACAACAA 59.456 33.333 0.00 0.00 0.00 2.83
355 470 6.385649 TCCACTAATTCAAACACCAAAGAC 57.614 37.500 0.00 0.00 0.00 3.01
357 472 6.568869 TGTTCCACTAATTCAAACACCAAAG 58.431 36.000 0.00 0.00 0.00 2.77
358 473 6.531503 TGTTCCACTAATTCAAACACCAAA 57.468 33.333 0.00 0.00 0.00 3.28
360 475 5.010516 CCATGTTCCACTAATTCAAACACCA 59.989 40.000 0.00 0.00 33.11 4.17
361 476 5.010617 ACCATGTTCCACTAATTCAAACACC 59.989 40.000 0.00 0.00 33.11 4.16
362 477 6.084326 ACCATGTTCCACTAATTCAAACAC 57.916 37.500 0.00 0.00 33.11 3.32
363 478 6.511416 CAACCATGTTCCACTAATTCAAACA 58.489 36.000 0.00 0.00 34.64 2.83
364 479 5.405269 GCAACCATGTTCCACTAATTCAAAC 59.595 40.000 0.00 0.00 0.00 2.93
365 480 5.304101 AGCAACCATGTTCCACTAATTCAAA 59.696 36.000 0.00 0.00 0.00 2.69
366 481 4.832266 AGCAACCATGTTCCACTAATTCAA 59.168 37.500 0.00 0.00 0.00 2.69
367 482 4.406456 AGCAACCATGTTCCACTAATTCA 58.594 39.130 0.00 0.00 0.00 2.57
368 483 6.095440 ACATAGCAACCATGTTCCACTAATTC 59.905 38.462 0.00 0.00 32.72 2.17
369 484 5.951747 ACATAGCAACCATGTTCCACTAATT 59.048 36.000 0.00 0.00 32.72 1.40
370 485 5.509498 ACATAGCAACCATGTTCCACTAAT 58.491 37.500 0.00 0.00 32.72 1.73
371 486 4.917385 ACATAGCAACCATGTTCCACTAA 58.083 39.130 0.00 0.00 32.72 2.24
372 487 4.568072 ACATAGCAACCATGTTCCACTA 57.432 40.909 0.00 0.00 32.72 2.74
373 488 3.439857 ACATAGCAACCATGTTCCACT 57.560 42.857 0.00 0.00 32.72 4.00
374 489 4.261801 AGTACATAGCAACCATGTTCCAC 58.738 43.478 0.00 0.00 37.74 4.02
375 490 4.568072 AGTACATAGCAACCATGTTCCA 57.432 40.909 0.00 0.00 37.74 3.53
376 491 4.941263 TCAAGTACATAGCAACCATGTTCC 59.059 41.667 0.00 0.00 37.74 3.62
377 492 6.540189 AGATCAAGTACATAGCAACCATGTTC 59.460 38.462 0.00 0.00 37.74 3.18
378 493 6.317140 CAGATCAAGTACATAGCAACCATGTT 59.683 38.462 0.00 0.00 37.74 2.71
379 494 5.819379 CAGATCAAGTACATAGCAACCATGT 59.181 40.000 0.00 0.00 39.82 3.21
380 495 5.819379 ACAGATCAAGTACATAGCAACCATG 59.181 40.000 0.00 0.00 0.00 3.66
381 496 5.994250 ACAGATCAAGTACATAGCAACCAT 58.006 37.500 0.00 0.00 0.00 3.55
382 497 5.420725 ACAGATCAAGTACATAGCAACCA 57.579 39.130 0.00 0.00 0.00 3.67
397 512 6.232692 TGAATCACATCAGTTGAACAGATCA 58.767 36.000 0.00 0.00 35.85 2.92
441 556 4.458989 TGCCAAGCAAGGTTTACTTCATAG 59.541 41.667 0.00 0.00 37.29 2.23
479 594 1.883084 GCGACAGGCCAGATTACCG 60.883 63.158 5.01 0.00 34.80 4.02
504 619 2.093973 GGGTCAGAAGAAGCGATGAGAA 60.094 50.000 0.00 0.00 0.00 2.87
519 634 3.506067 GGTTACAACATTTGAGGGGTCAG 59.494 47.826 0.00 0.00 0.00 3.51
523 638 3.226777 TGTGGTTACAACATTTGAGGGG 58.773 45.455 0.00 0.00 32.88 4.79
536 651 6.799925 CGGACATACATTTTTCTTGTGGTTAC 59.200 38.462 0.00 0.00 0.00 2.50
553 668 1.271379 TGTGACTGTGGACGGACATAC 59.729 52.381 0.00 0.00 30.44 2.39
557 672 0.104304 AAGTGTGACTGTGGACGGAC 59.896 55.000 0.00 0.00 0.00 4.79
603 761 9.979578 AACAAGAATGCAAACTAAATAACATCA 57.020 25.926 0.00 0.00 0.00 3.07
624 782 9.311916 TGTCTCAAATCAAATACCAAAAACAAG 57.688 29.630 0.00 0.00 0.00 3.16
642 800 1.421268 ACCATGCTCCACTGTCTCAAA 59.579 47.619 0.00 0.00 0.00 2.69
644 802 1.059098 AACCATGCTCCACTGTCTCA 58.941 50.000 0.00 0.00 0.00 3.27
645 803 1.446907 CAACCATGCTCCACTGTCTC 58.553 55.000 0.00 0.00 0.00 3.36
646 804 3.639099 CAACCATGCTCCACTGTCT 57.361 52.632 0.00 0.00 0.00 3.41
670 828 5.296780 TCACATCAAGGACAAACAGAAAGAC 59.703 40.000 0.00 0.00 0.00 3.01
680 839 8.862325 AATTAAGTACATCACATCAAGGACAA 57.138 30.769 0.00 0.00 0.00 3.18
719 878 9.354673 ACCAAAAGAAGTTAAGATGAATTCTCA 57.645 29.630 7.05 0.00 31.78 3.27
730 889 8.391075 TGACCTCATAACCAAAAGAAGTTAAG 57.609 34.615 0.00 0.00 32.52 1.85
732 891 7.229907 GGTTGACCTCATAACCAAAAGAAGTTA 59.770 37.037 0.00 0.00 44.48 2.24
735 894 5.770162 AGGTTGACCTCATAACCAAAAGAAG 59.230 40.000 8.64 0.00 44.77 2.85
736 895 5.701224 AGGTTGACCTCATAACCAAAAGAA 58.299 37.500 8.64 0.00 44.77 2.52
737 896 5.319043 AGGTTGACCTCATAACCAAAAGA 57.681 39.130 8.64 0.00 44.77 2.52
751 913 2.123409 TTGCCAAGCAAGGTTGACC 58.877 52.632 13.10 4.97 43.99 4.02
762 924 5.830912 TCAACTAACTTGTCATTTGCCAAG 58.169 37.500 0.11 0.11 42.91 3.61
780 942 1.029681 GGCCGGTCAAGTTTTCAACT 58.970 50.000 0.00 0.00 45.46 3.16
783 945 1.529713 GGGGCCGGTCAAGTTTTCA 60.530 57.895 9.07 0.00 0.00 2.69
784 946 1.228459 AGGGGCCGGTCAAGTTTTC 60.228 57.895 9.07 0.00 0.00 2.29
785 947 1.228459 GAGGGGCCGGTCAAGTTTT 60.228 57.895 9.07 0.00 0.00 2.43
789 951 4.785453 GCAGAGGGGCCGGTCAAG 62.785 72.222 9.07 0.00 0.00 3.02
800 962 3.736433 CGAGGTGTCATAAGAAGCAGAGG 60.736 52.174 0.00 0.00 0.00 3.69
803 965 3.510388 TCGAGGTGTCATAAGAAGCAG 57.490 47.619 0.00 0.00 0.00 4.24
817 990 7.971722 CCGGAAAAATAAAAATACATTCGAGGT 59.028 33.333 0.00 0.00 0.00 3.85
819 992 8.185505 TCCCGGAAAAATAAAAATACATTCGAG 58.814 33.333 0.73 0.00 0.00 4.04
821 994 8.690680 TTCCCGGAAAAATAAAAATACATTCG 57.309 30.769 0.73 0.00 0.00 3.34
824 997 8.598916 AGGTTTCCCGGAAAAATAAAAATACAT 58.401 29.630 14.36 0.00 33.14 2.29
826 999 7.274033 CGAGGTTTCCCGGAAAAATAAAAATAC 59.726 37.037 14.36 0.00 33.14 1.89
833 1006 3.699411 TCGAGGTTTCCCGGAAAAATA 57.301 42.857 14.36 0.00 33.14 1.40
834 1007 2.572209 TCGAGGTTTCCCGGAAAAAT 57.428 45.000 14.36 6.03 33.14 1.82
835 1008 2.345124 TTCGAGGTTTCCCGGAAAAA 57.655 45.000 14.36 0.00 33.14 1.94
836 1009 2.156098 CATTCGAGGTTTCCCGGAAAA 58.844 47.619 14.36 0.00 33.14 2.29
837 1010 1.072648 ACATTCGAGGTTTCCCGGAAA 59.927 47.619 8.63 8.63 33.62 3.13
838 1011 0.688487 ACATTCGAGGTTTCCCGGAA 59.312 50.000 0.73 0.00 34.15 4.30
839 1012 1.559368 TACATTCGAGGTTTCCCGGA 58.441 50.000 0.73 0.00 35.12 5.14
840 1013 2.614829 ATACATTCGAGGTTTCCCGG 57.385 50.000 0.00 0.00 35.12 5.73
841 1014 3.936453 TGAAATACATTCGAGGTTTCCCG 59.064 43.478 0.00 0.00 41.18 5.14
864 1037 8.988060 TGGACAGAGATATTATTTTCCTGTGTA 58.012 33.333 0.00 0.00 32.58 2.90
865 1038 7.770897 GTGGACAGAGATATTATTTTCCTGTGT 59.229 37.037 0.00 0.00 34.66 3.72
866 1039 7.770433 TGTGGACAGAGATATTATTTTCCTGTG 59.230 37.037 0.00 0.00 34.06 3.66
867 1040 7.861629 TGTGGACAGAGATATTATTTTCCTGT 58.138 34.615 0.00 0.00 36.27 4.00
868 1041 7.989741 ACTGTGGACAGAGATATTATTTTCCTG 59.010 37.037 13.74 0.00 46.59 3.86
869 1042 8.095452 ACTGTGGACAGAGATATTATTTTCCT 57.905 34.615 13.74 0.00 46.59 3.36
870 1043 7.987458 TGACTGTGGACAGAGATATTATTTTCC 59.013 37.037 13.74 0.00 46.59 3.13
871 1044 8.821894 GTGACTGTGGACAGAGATATTATTTTC 58.178 37.037 13.74 0.00 46.59 2.29
872 1045 8.321353 TGTGACTGTGGACAGAGATATTATTTT 58.679 33.333 13.74 0.00 46.59 1.82
873 1046 7.766278 GTGTGACTGTGGACAGAGATATTATTT 59.234 37.037 13.74 0.00 46.59 1.40
874 1047 7.124901 AGTGTGACTGTGGACAGAGATATTATT 59.875 37.037 13.74 0.00 46.59 1.40
875 1048 6.609212 AGTGTGACTGTGGACAGAGATATTAT 59.391 38.462 13.74 0.00 46.59 1.28
876 1049 5.952347 AGTGTGACTGTGGACAGAGATATTA 59.048 40.000 13.74 0.00 46.59 0.98
877 1050 4.774726 AGTGTGACTGTGGACAGAGATATT 59.225 41.667 13.74 0.00 46.59 1.28
878 1051 4.348486 AGTGTGACTGTGGACAGAGATAT 58.652 43.478 13.74 0.00 46.59 1.63
879 1052 3.767711 AGTGTGACTGTGGACAGAGATA 58.232 45.455 13.74 0.00 46.59 1.98
883 1056 3.496331 TCATAGTGTGACTGTGGACAGA 58.504 45.455 13.74 0.00 46.59 3.41
892 1065 8.712228 TGGTTATCTATCATCATAGTGTGACT 57.288 34.615 0.00 0.00 40.28 3.41
914 1087 7.255590 GGGTCATCAATCGATAAAATCAATGGT 60.256 37.037 0.00 0.00 0.00 3.55
915 1088 7.040201 AGGGTCATCAATCGATAAAATCAATGG 60.040 37.037 0.00 0.00 0.00 3.16
917 1090 7.503566 ACAGGGTCATCAATCGATAAAATCAAT 59.496 33.333 0.00 0.00 0.00 2.57
918 1091 6.828273 ACAGGGTCATCAATCGATAAAATCAA 59.172 34.615 0.00 0.00 0.00 2.57
919 1092 6.356556 ACAGGGTCATCAATCGATAAAATCA 58.643 36.000 0.00 0.00 0.00 2.57
920 1093 6.867662 ACAGGGTCATCAATCGATAAAATC 57.132 37.500 0.00 0.00 0.00 2.17
921 1094 7.509546 ACTACAGGGTCATCAATCGATAAAAT 58.490 34.615 0.00 0.00 0.00 1.82
922 1095 6.884832 ACTACAGGGTCATCAATCGATAAAA 58.115 36.000 0.00 0.00 0.00 1.52
937 1110 3.371595 GGTATGCATGGAAACTACAGGGT 60.372 47.826 10.16 0.00 0.00 4.34
938 1111 3.214328 GGTATGCATGGAAACTACAGGG 58.786 50.000 10.16 0.00 0.00 4.45
939 1112 3.627577 GTGGTATGCATGGAAACTACAGG 59.372 47.826 10.16 0.00 0.00 4.00
950 1123 9.494271 AGTAGTTTGATATTAGTGGTATGCATG 57.506 33.333 10.16 0.00 0.00 4.06
957 1130 8.947115 GCAAGAAAGTAGTTTGATATTAGTGGT 58.053 33.333 0.00 0.00 0.00 4.16
960 1134 9.726438 ACTGCAAGAAAGTAGTTTGATATTAGT 57.274 29.630 0.00 0.00 37.43 2.24
969 1143 5.648092 ACTTGTCACTGCAAGAAAGTAGTTT 59.352 36.000 15.74 0.00 46.34 2.66
974 1148 3.375299 GTCACTTGTCACTGCAAGAAAGT 59.625 43.478 15.74 0.07 46.34 2.66
976 1150 3.609853 AGTCACTTGTCACTGCAAGAAA 58.390 40.909 15.74 5.05 46.34 2.52
993 1167 4.046286 AGCCAAATCACCCATAAAGTCA 57.954 40.909 0.00 0.00 0.00 3.41
998 1172 4.314522 TCAGAAGCCAAATCACCCATAA 57.685 40.909 0.00 0.00 0.00 1.90
999 1173 4.524802 ATCAGAAGCCAAATCACCCATA 57.475 40.909 0.00 0.00 0.00 2.74
1016 1190 7.408756 TCCATGGGTAATTTTTCAGAATCAG 57.591 36.000 13.02 0.00 0.00 2.90
1034 1208 0.106708 CATACCGTGACCCTCCATGG 59.893 60.000 4.97 4.97 46.19 3.66
1051 1225 3.262660 TCATCCTTGCAGACAGAAGACAT 59.737 43.478 0.00 0.00 0.00 3.06
1052 1226 2.634453 TCATCCTTGCAGACAGAAGACA 59.366 45.455 0.00 0.00 0.00 3.41
1053 1227 2.999355 GTCATCCTTGCAGACAGAAGAC 59.001 50.000 0.00 0.00 32.68 3.01
1077 1251 1.042559 GTGCCTCCTCTAGCAGAGCT 61.043 60.000 7.44 0.00 40.98 4.09
1079 1253 1.408702 GAAGTGCCTCCTCTAGCAGAG 59.591 57.143 6.28 6.28 41.96 3.35
1120 1294 1.877637 TGGAGTTCCACACATGAACG 58.122 50.000 0.00 0.00 45.26 3.95
1139 1313 5.643421 ATGAGTTCCTTTCTGGCTATGAT 57.357 39.130 0.00 0.00 35.26 2.45
1145 1319 5.335976 CCTTGTTTATGAGTTCCTTTCTGGC 60.336 44.000 0.00 0.00 35.26 4.85
1150 1324 4.524328 CCTGCCTTGTTTATGAGTTCCTTT 59.476 41.667 0.00 0.00 0.00 3.11
1152 1326 3.562176 CCCTGCCTTGTTTATGAGTTCCT 60.562 47.826 0.00 0.00 0.00 3.36
1169 1343 1.273327 CCAAAGAACCAACATCCCTGC 59.727 52.381 0.00 0.00 0.00 4.85
1170 1344 2.821969 CTCCAAAGAACCAACATCCCTG 59.178 50.000 0.00 0.00 0.00 4.45
1178 1352 4.199310 CACTTCAGTCTCCAAAGAACCAA 58.801 43.478 0.00 0.00 31.93 3.67
1200 1374 2.158885 GCTGGGAGAACCTGAAGTATCC 60.159 54.545 0.00 0.00 40.42 2.59
1206 1380 0.979665 CTGAGCTGGGAGAACCTGAA 59.020 55.000 0.00 0.00 40.42 3.02
1256 1430 1.612463 GATTGGAGATTGCATGGGAGC 59.388 52.381 0.00 0.00 0.00 4.70
1280 1454 6.790232 AAGTTGAAGATTCCTTTGGTTCAA 57.210 33.333 0.00 0.00 35.34 2.69
1292 1466 4.929808 ACGAACGCTCATAAGTTGAAGATT 59.070 37.500 0.00 0.00 32.78 2.40
1293 1467 4.495422 ACGAACGCTCATAAGTTGAAGAT 58.505 39.130 0.00 0.00 32.78 2.40
1311 1485 1.007038 CACCGGAAAGGACGACGAA 60.007 57.895 9.46 0.00 45.00 3.85
1313 1487 1.443872 CTCACCGGAAAGGACGACG 60.444 63.158 9.46 0.00 45.00 5.12
1315 1489 0.316204 GAACTCACCGGAAAGGACGA 59.684 55.000 9.46 0.00 45.00 4.20
1340 1514 5.877012 TGAAGCAAACAAAGCATGGTTTAAA 59.123 32.000 21.61 0.00 36.60 1.52
1344 1518 3.460103 CTGAAGCAAACAAAGCATGGTT 58.540 40.909 3.82 3.82 40.45 3.67
1346 1520 1.796459 GCTGAAGCAAACAAAGCATGG 59.204 47.619 0.00 0.00 41.59 3.66
1347 1521 2.750948 AGCTGAAGCAAACAAAGCATG 58.249 42.857 4.90 0.00 45.16 4.06
1369 1543 3.557207 GCTAAAAGCATCATGGGCG 57.443 52.632 0.00 0.00 41.89 6.13
1375 1549 7.708322 CTCTAACAGAGTATGCTAAAAGCATCA 59.292 37.037 17.13 2.96 46.30 3.07
1397 1571 9.883293 TTTCCATTCATAGAGATACTTCCTCTA 57.117 33.333 0.00 0.00 44.50 2.43
1398 1572 8.789767 TTTCCATTCATAGAGATACTTCCTCT 57.210 34.615 0.00 0.00 42.97 3.69
1400 1574 8.435982 CCTTTTCCATTCATAGAGATACTTCCT 58.564 37.037 0.00 0.00 0.00 3.36
1401 1575 7.663493 CCCTTTTCCATTCATAGAGATACTTCC 59.337 40.741 0.00 0.00 0.00 3.46
1402 1576 7.663493 CCCCTTTTCCATTCATAGAGATACTTC 59.337 40.741 0.00 0.00 0.00 3.01
1403 1577 7.129504 ACCCCTTTTCCATTCATAGAGATACTT 59.870 37.037 0.00 0.00 0.00 2.24
1404 1578 6.621514 ACCCCTTTTCCATTCATAGAGATACT 59.378 38.462 0.00 0.00 0.00 2.12
1411 1585 2.358898 CGCACCCCTTTTCCATTCATAG 59.641 50.000 0.00 0.00 0.00 2.23
1418 1592 1.228124 CTGACGCACCCCTTTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
1421 1595 1.228154 GACCTGACGCACCCCTTTT 60.228 57.895 0.00 0.00 0.00 2.27
1422 1596 2.147387 AGACCTGACGCACCCCTTT 61.147 57.895 0.00 0.00 0.00 3.11
1425 1599 4.394712 CCAGACCTGACGCACCCC 62.395 72.222 0.00 0.00 0.00 4.95
1432 1606 2.362242 TGGCTACACCAGACCTGAC 58.638 57.895 0.00 0.00 46.36 3.51
1441 1615 3.118038 TCCATTTAGGATGTGGCTACACC 60.118 47.826 4.50 9.29 43.85 4.16
1454 1628 6.930722 GGTGCCATTCATAATTTCCATTTAGG 59.069 38.462 0.00 0.00 39.47 2.69
1460 1634 3.705579 CCTGGTGCCATTCATAATTTCCA 59.294 43.478 0.00 0.00 0.00 3.53
1466 1640 3.371917 CCTCTTCCTGGTGCCATTCATAA 60.372 47.826 0.00 0.00 0.00 1.90
1469 1643 0.329261 CCTCTTCCTGGTGCCATTCA 59.671 55.000 0.00 0.00 0.00 2.57
1473 1647 2.409984 TACCCCTCTTCCTGGTGCCA 62.410 60.000 0.00 0.00 33.55 4.92
1475 1649 0.919710 AATACCCCTCTTCCTGGTGC 59.080 55.000 0.00 0.00 33.55 5.01
1487 1661 7.988028 GTCAGGATATTATAGCAAGAATACCCC 59.012 40.741 0.00 0.00 23.85 4.95
1518 1692 7.923878 TGCTAAACATTTTTCACCTAGGAAAAC 59.076 33.333 17.98 0.00 44.08 2.43
1524 1698 8.134895 TGAAGTTGCTAAACATTTTTCACCTAG 58.865 33.333 0.00 0.00 38.88 3.02
1536 1710 4.681744 CTGCCTTTTGAAGTTGCTAAACA 58.318 39.130 0.00 0.00 38.88 2.83
1546 1722 7.546667 ACAACATATTATTGCTGCCTTTTGAAG 59.453 33.333 0.00 0.00 0.00 3.02
1575 1751 2.885266 CGGCTGAGAGGCTAGTAATACA 59.115 50.000 0.00 0.00 38.85 2.29
1578 1754 1.683917 CACGGCTGAGAGGCTAGTAAT 59.316 52.381 0.00 0.00 38.85 1.89
1585 1761 1.004440 AAGAACACGGCTGAGAGGC 60.004 57.895 0.00 0.00 37.44 4.70
1634 1810 6.379703 TCAAACAAGAGAACTTTGGAAATCCA 59.620 34.615 0.00 0.00 45.94 3.41
1638 1814 7.035004 CACATCAAACAAGAGAACTTTGGAAA 58.965 34.615 0.00 0.00 33.70 3.13
1642 1818 5.973565 GGTCACATCAAACAAGAGAACTTTG 59.026 40.000 0.00 0.00 33.70 2.77
1643 1819 5.652014 TGGTCACATCAAACAAGAGAACTTT 59.348 36.000 0.00 0.00 33.70 2.66
1677 1859 1.703411 TTGGCCTGGGAACTGAAAAG 58.297 50.000 3.32 0.00 0.00 2.27
1702 1884 7.701539 ATAACTCAATAGGCACAACAAATCA 57.298 32.000 0.00 0.00 0.00 2.57
1703 1885 8.028938 ACAATAACTCAATAGGCACAACAAATC 58.971 33.333 0.00 0.00 0.00 2.17
1718 1900 2.224426 ACAGCCGGACACAATAACTCAA 60.224 45.455 5.05 0.00 0.00 3.02
1722 1904 1.519408 ACACAGCCGGACACAATAAC 58.481 50.000 5.05 0.00 0.00 1.89
1734 1916 1.153349 GCCTACAGCCTACACAGCC 60.153 63.158 0.00 0.00 34.35 4.85
1740 1922 3.323403 AGATTGATGAGCCTACAGCCTAC 59.677 47.826 0.00 0.00 45.47 3.18
1741 1923 3.323115 CAGATTGATGAGCCTACAGCCTA 59.677 47.826 0.00 0.00 45.47 3.93
1742 1924 2.104451 CAGATTGATGAGCCTACAGCCT 59.896 50.000 0.00 0.00 45.47 4.58
1743 1925 2.158842 ACAGATTGATGAGCCTACAGCC 60.159 50.000 0.00 0.00 45.47 4.85
1744 1926 2.871022 CACAGATTGATGAGCCTACAGC 59.129 50.000 0.00 0.00 44.25 4.40
1745 1927 3.118482 ACCACAGATTGATGAGCCTACAG 60.118 47.826 0.00 0.00 0.00 2.74
1746 1928 2.840038 ACCACAGATTGATGAGCCTACA 59.160 45.455 0.00 0.00 0.00 2.74
1747 1929 3.201290 CACCACAGATTGATGAGCCTAC 58.799 50.000 0.00 0.00 0.00 3.18
1799 1985 7.463544 CGCAGTTTCATGATCAACTTAACATA 58.536 34.615 9.60 0.00 30.48 2.29
1807 1993 2.160219 TCAGCGCAGTTTCATGATCAAC 59.840 45.455 11.47 0.00 0.00 3.18
1844 2030 8.023128 AGCTTAAATGTACAACTACAGCAAATG 58.977 33.333 15.61 0.00 36.28 2.32
1846 2032 7.504924 AGCTTAAATGTACAACTACAGCAAA 57.495 32.000 15.61 0.00 36.28 3.68
1847 2033 7.333423 CCTAGCTTAAATGTACAACTACAGCAA 59.667 37.037 15.61 0.00 36.28 3.91
1871 2074 7.285566 ACAGTATCATCATATTGTGAAAGCCT 58.714 34.615 0.00 0.00 40.97 4.58
1885 2088 8.623903 GCATTTTCCTTGATTACAGTATCATCA 58.376 33.333 0.00 0.00 34.67 3.07
1887 2090 8.408601 GTGCATTTTCCTTGATTACAGTATCAT 58.591 33.333 0.00 0.00 34.67 2.45
1901 2104 5.934043 GGCAAAGATAAAGTGCATTTTCCTT 59.066 36.000 10.79 12.19 40.12 3.36
1902 2105 5.246883 AGGCAAAGATAAAGTGCATTTTCCT 59.753 36.000 10.79 6.73 40.12 3.36
1905 2108 5.179929 GCAAGGCAAAGATAAAGTGCATTTT 59.820 36.000 12.16 12.16 40.00 1.82
1907 2110 4.020839 AGCAAGGCAAAGATAAAGTGCATT 60.021 37.500 0.00 0.00 42.46 3.56
1908 2111 3.512724 AGCAAGGCAAAGATAAAGTGCAT 59.487 39.130 0.00 0.00 40.12 3.96
1910 2113 3.582714 AGCAAGGCAAAGATAAAGTGC 57.417 42.857 0.00 0.00 37.55 4.40
1911 2114 4.161333 CGAAGCAAGGCAAAGATAAAGTG 58.839 43.478 0.00 0.00 0.00 3.16
1912 2115 3.191371 CCGAAGCAAGGCAAAGATAAAGT 59.809 43.478 0.00 0.00 0.00 2.66
1920 2139 1.838112 ATGATCCGAAGCAAGGCAAA 58.162 45.000 0.00 0.00 0.00 3.68
1927 2146 5.700832 GGATGTGTATAAATGATCCGAAGCA 59.299 40.000 0.00 0.00 0.00 3.91
1928 2147 5.122396 GGGATGTGTATAAATGATCCGAAGC 59.878 44.000 0.00 0.00 34.50 3.86
1931 2150 4.844085 AGGGGATGTGTATAAATGATCCGA 59.156 41.667 0.00 0.00 34.50 4.55
1932 2151 5.165961 AGGGGATGTGTATAAATGATCCG 57.834 43.478 0.00 0.00 34.50 4.18
1933 2152 5.946377 GGAAGGGGATGTGTATAAATGATCC 59.054 44.000 0.00 0.00 33.14 3.36
1934 2153 6.784031 AGGAAGGGGATGTGTATAAATGATC 58.216 40.000 0.00 0.00 0.00 2.92
1935 2154 6.786843 AGGAAGGGGATGTGTATAAATGAT 57.213 37.500 0.00 0.00 0.00 2.45
1936 2155 7.888514 ATAGGAAGGGGATGTGTATAAATGA 57.111 36.000 0.00 0.00 0.00 2.57
1937 2156 8.940397 AAATAGGAAGGGGATGTGTATAAATG 57.060 34.615 0.00 0.00 0.00 2.32
1938 2157 9.588096 GAAAATAGGAAGGGGATGTGTATAAAT 57.412 33.333 0.00 0.00 0.00 1.40
1939 2158 8.787818 AGAAAATAGGAAGGGGATGTGTATAAA 58.212 33.333 0.00 0.00 0.00 1.40
1940 2159 8.217799 CAGAAAATAGGAAGGGGATGTGTATAA 58.782 37.037 0.00 0.00 0.00 0.98
1941 2160 7.349859 ACAGAAAATAGGAAGGGGATGTGTATA 59.650 37.037 0.00 0.00 0.00 1.47
1942 2161 6.160459 ACAGAAAATAGGAAGGGGATGTGTAT 59.840 38.462 0.00 0.00 0.00 2.29
1943 2162 5.491078 ACAGAAAATAGGAAGGGGATGTGTA 59.509 40.000 0.00 0.00 0.00 2.90
1944 2163 4.292306 ACAGAAAATAGGAAGGGGATGTGT 59.708 41.667 0.00 0.00 0.00 3.72
1950 2169 5.452077 CGACTAGACAGAAAATAGGAAGGGG 60.452 48.000 0.00 0.00 0.00 4.79
2022 2241 0.950836 CAGTTGGCGATGTTTCACCA 59.049 50.000 0.00 0.00 32.18 4.17
2029 2251 1.296715 GGACTCCAGTTGGCGATGT 59.703 57.895 0.00 0.00 34.44 3.06
2045 2267 2.041686 GCCCAATTAACGTGGCGGA 61.042 57.895 0.00 0.00 34.56 5.54
2055 2277 1.006813 ACACATCTGGGGCCCAATTA 58.993 50.000 28.43 15.57 30.80 1.40
2190 2412 0.603707 CGCTCTTCTTGCTGTTCCCA 60.604 55.000 0.00 0.00 0.00 4.37
2240 2465 4.717629 CGGGCACGTCGAGAGCAA 62.718 66.667 0.00 0.00 38.23 3.91
2271 2496 3.231160 CGAAGGTGGTAAAACGAAATGC 58.769 45.455 0.00 0.00 0.00 3.56
2313 2538 0.021610 GTACGACGATTTCACACGCG 59.978 55.000 3.53 3.53 36.10 6.01
2326 2551 1.978542 AATGTCTGTCAGCGTACGAC 58.021 50.000 21.65 9.17 0.00 4.34
2368 2593 3.484953 TCCCCTAAGCCTAGTTCTTCA 57.515 47.619 0.00 0.00 0.00 3.02
2371 2596 3.108376 CACTTCCCCTAAGCCTAGTTCT 58.892 50.000 0.00 0.00 38.93 3.01
2386 2611 2.683933 TCGGCCTCCTCCACTTCC 60.684 66.667 0.00 0.00 0.00 3.46
2716 2951 7.390162 GGGGATTCAATTATTCTCAGATCTCAC 59.610 40.741 0.00 0.00 0.00 3.51
2746 2981 2.283298 CAATGGATGACAACTCCCTCG 58.717 52.381 0.00 0.00 31.32 4.63
2754 2989 7.994911 AGATAAGATTAGCACAATGGATGACAA 59.005 33.333 0.00 0.00 0.00 3.18
2757 2992 7.446319 CCAAGATAAGATTAGCACAATGGATGA 59.554 37.037 0.00 0.00 0.00 2.92
2759 2994 6.718454 CCCAAGATAAGATTAGCACAATGGAT 59.282 38.462 0.00 0.00 0.00 3.41
2760 2995 6.064060 CCCAAGATAAGATTAGCACAATGGA 58.936 40.000 0.00 0.00 0.00 3.41
2761 2996 5.829924 ACCCAAGATAAGATTAGCACAATGG 59.170 40.000 0.00 0.00 0.00 3.16
2762 2997 6.016777 GGACCCAAGATAAGATTAGCACAATG 60.017 42.308 0.00 0.00 0.00 2.82
2763 2998 6.064717 GGACCCAAGATAAGATTAGCACAAT 58.935 40.000 0.00 0.00 0.00 2.71
2789 3025 4.037565 CCAGTAATGAGCAATGCATGACAT 59.962 41.667 8.35 4.81 42.30 3.06
2796 3032 4.214971 CCTGATACCAGTAATGAGCAATGC 59.785 45.833 0.00 0.00 38.74 3.56
2808 3087 3.445008 ACTGATGTGACCTGATACCAGT 58.555 45.455 0.00 0.00 38.74 4.00
2866 3145 2.084546 AGCCTTGCCGCTTTAAGTAAG 58.915 47.619 0.00 0.00 34.73 2.34
2892 3171 0.898320 CGTTCCTCCTCTCATGGTGT 59.102 55.000 0.00 0.00 0.00 4.16
2924 3203 0.945813 GATCAATGCTCTGCTCTGGC 59.054 55.000 0.00 0.00 39.26 4.85
3065 3350 2.279073 CTAGGACGGAGAGGGCCA 59.721 66.667 6.18 0.00 0.00 5.36
3175 3463 2.578021 TGGCTGGAAGGAAGAAAGCTAT 59.422 45.455 0.00 0.00 34.29 2.97
3179 3467 3.424703 TGAATGGCTGGAAGGAAGAAAG 58.575 45.455 0.00 0.00 0.00 2.62
3210 3498 3.568007 GCACACTGAAACCAGACCAAATA 59.432 43.478 0.00 0.00 35.67 1.40
3314 3602 1.712056 TGGATGGATGGTACGGTAGG 58.288 55.000 0.00 0.00 0.00 3.18
3315 3603 5.419542 CATAATGGATGGATGGTACGGTAG 58.580 45.833 0.00 0.00 31.20 3.18
3388 3680 6.773685 ACTATATTTTTGGTGGCGGCTAATTA 59.226 34.615 11.43 0.00 0.00 1.40
3454 3746 0.335361 TAGGAGCCGGGTCTCTCTTT 59.665 55.000 31.09 13.38 33.70 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.