>input_sequence_49513
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-----------------------------------------------------ATGGGTGATTTGGCTTCTGATTCTGAA
AAATTACCCATGGAGGGTCACGGTATGTCTTCTGTCTGCAAGGATGACATAGCTCTGCTAGAGGAGGCACTTCCTCCAGC
GGGGCAGGCTCCACGTTCATGTGTGGAACTCCATCATAGCCAGAAAGGAACTCATAAACAAGGCAGGGATGTTGGTTCTT
TGGAGACTGAAGTGGATACTTCAGGTTCTCCCAGCTCAGGAATAAAGAGAGGCAAAGGAGGTGATGGGAGCTCCCATGCA
ATCTCCAATCACATTGAACCAAAGGAATCTTCAACTTATGAGCGTTCGTCGTCCTTTCCGGTGAGTTCAACATTTTAAAC
CATGCTTTGTTTGCTTCAGCTACGCCCATGATGCTTTTAGCATACTCTGTTAGAGGAAGTATCTCTATGAATGGAAAAGG
GGTGCGTCAGGTCTGGTGTAGCCACATCCTAAATGGAAATTATGAATGGCACCAGGAAGAGGGGTATTCTTGCTATAATA
TCCTGACATTGGTTTTCCTAGGTGAAAAATG--TTTAGCAACTTCAAAAGGCAGCAATAATATGTTGTGGTGTATTACTA
GCCTCTCAGCCGTGTTCTTGTTGTGAAACATGTTTCACCTGTCTGCATTTGGATTTCCAAAGTTCT------CTTGTTTG
ATGTGACCATGCCATTTACTTTTCAGTTCCCAGGCCAATTATATGATTTGTTGTGCCTATTGAGTTATTGTGTCCGGCTG
TGTAGGCTGTAGGCTCATCAATCTGTGGTGTGAATTTGAATGAGCTAAG----CTTAAACTTGTTATGTTAAGTTGATCA
TGAAACTGCGCTGAGTTCAGTTCTGTTCCCATTTGCTGTAGTTGT-----------------ACATTTAAGCTAGGCTTT
CACAATATGATGATACTGTAATCAAGGAAAATGCAC----------------TTTATCTTTGCCTTGCTTCGGATCATTT
ATACACATCCCCTTCCTATTTTCTGTCTAGTCGACGTCAAGGCTTCTCGTCTCCGCTATGAAAGGAGGCCGTGAGAGAAG
TGG---TGAAACATCGCCAACTGGAGTCCGCCACGTTAATTGGGCCCCAGATGTGTACGACCCCCCGGTCACCTCTGTCG
ACCACACGGTGAAGGGCCACCAACAGCGCTCCAGGTCCAGGAAGAAGGACAAGGGCAAGCAGAAACAGAAGCAGAAGAAG
AGGAAGTCGCGTGGGAACAGCAAGAAGAGCGGC---GGCCTCCACGACGCCGCCCACAACCCGCTTGCTCTCGACGTGCC
CGGGTAAGACCACAAGCATTTCGTTTTACCACCTTCGGTTCCACGCTTCAGGAATCACGCGTGTGAAATCGTCGTACGCT
GACAGACATTTTCTCCTCAGGCCGTCTTCGCCTGAAGAACTAGGCTTAGGGGAAGTGGAGGAGGCCGAGGTGCTGGACTA
CAGCGCCTTCGACAGTCAGGAGCCCAAGTGCGGAGGCGGCTTCCCACGCGAGATCGCCGCGGCGCGGACGTGTTTCCCCG
CCGCCGAGGCGTCATGA---------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>chr3B_1_TraesCS3B01G610500
CGGCATTTCTCGACAACTCGGACCGATCTCGCTCAACCGCGGACCGGATCTGCTTACTCCGTGGGCTCCGCTGATCGCCG
ATTGCTT-------------CTCAGCAGCTCAGGTACTTTACAACCAGGGATCACGCCGTACCGATCTGCGCCGCCACAG
GGTGAGCGATCCTGCCCTGTTTGTTTCTAGTAAGATCGCACAGAA-----TGAGCCGGCCACGATTGG------------
--------GGGATTGGGGAGTTAATAAAG--------------------------------GGCTAGTAAGTAAACTCTT
GTGCGCAGCAGGATAGATCATCACTGGACAGAGTTT------------------------------------------AG
CAAGAATAGAGTGGGTTGCTACTGGCA--TTTCACAGATTTTTTTTTATCCGCTGATATGGCATTTGTTGTCTTTGGTGT
TTGAATTAGTGGAACATGGTTGCTATGTACTTGATCTGTTCAACTGATGTGATTCATCATGCAAAACTCGTTTCACTATG
AAGTAAACCTTGCTTGGCAAACTACAAGTTGGCCGGTAATCTGGCCTGTCGCTGGCACTTCTCATCGCTTCTTCTGACCC
CTCAAATGTTGTAACCACAAGAAAAATGTATGTCCGTCCACAGTCACACTTTGGTGATAACCATAAACTTTACA------
-------------------------------------GATTGATGTTATTTAGTTTGCATTCTTGTTTTTGGTATTTGAT
TTGAGACAGTGGAGCATGGTTGCTAATGTCT-TTCTGTTTGTCCTTGATGTGATGTACTTAATTTGTTCAACAAATATGA
GAATTCATCTTAACTTCT---TTTGGTTATGAGGTCAACCTTGCTTGGCAAATGACAAGTTAGTTGAAAACTTGACCGGC
CCCTC-----------TGCTTCTTATGACACCTCGAATGTATTTTTATTTTTCCGGGAAACCTCGAATGTATTTCATACA
CAGGAAAATAATATCTCTGTCCACAGTCACACTATGATGATAGATAACCATTGATTTTATCGATTGATGACCCTGTAGTT
TCCATGCATA-CCACTAATATCAAACTACTTTCTTGCAGTGACAAGTGACTTTATGGGTGATTTGGCTTCTGATTCTGAA
AAATTACCCATGGAGGGTCACGGTATGTCTTCTGTCTGCAAGGATGACATAGCTCTGCTAGAGGAGGCACTTCCTCCAGC
GGGGCAGGCTCCACGTTCATGTGTGGAACTCCATCATAGCCAGAAAGGAACTCATAAACAAGGCAGGGATGTTGGTTCTT
TGGAGACTGAAGTGGATACTTCAGGTTCTCCCAGCTCAGGAATAAAGAGAGGCAAAGGAGGTGATGGGAGCTCCCATGCA
ATCTCCAATCACATTGAACCAAAGGAATCTTCAACTTATGAGCGTTCGTCGTCCTTTCCGGTGAGTTCAACATTTTAAAC
CATGCTTTGTTTGCTTCAGCTACGCCCATGATGCTTTTAGCATACTCTGTTAGAGGAAGTATCTCTATGAATGGAAAAGG
GGTGCGTCAGGTCTGGTGTAGCCACATCCTAAATGGAAATTATGAATGGCACCAGGAAGAGGGGTATTCTTGCTATAATA
TCCTGACATTGGTTTTCCTAGGTGAAAAATG--TTTAGCAACTTCAAAAGGCAGCAATAATATGTTGTGGTGTATTACTA
GCCTCTCAGCCGTGTTCTTGTTGTGAAACATGTTTCACCTGTCTGCATTTGGATTTCCAAAGTTCT------CTTGTTTG
ATGTGACCATGCCATTTACTTTTCAGTTCCCAGGCCAATTATATGATTTGTTGTGCCTATTGAGTTATTGTGTCCGGCTG
TGTAGGCTGTAGGCTCATCAATCTGTGGTGTGAATTTGAATGAGCTAAG----CTTAAACTTGTTATGTTAAGTTGATCA
TGAAACTGCGCTGAGTTCAGTTCTGTTCCCATTTGCTGTAGTTGT-----------------ACATTTAAGCTAGGCTTT
CACAATATGATGATACTGTAATCAAGGAAAATGCAC----------------TTTATCTTTGCCTTGCTTCGGATCATTT
ATACACATCCCCTTCCTATTTTCTGTCTAGTCGACGTCAAGGCTTCTCGTCTCCGCTATGAAAGGAGGCCGTGAGAGAAG
TGG---TGAAACATCGCCAACTGGAGTCCGCCACGTTAATTGGGCCCCAGATGTGTACGACCCCCCGGTCACCTCTGTCG
ACCACACGGTGAAGGGCCACCAACAGCGCTCCAGGTCCAGGAAGAAGGACAAGGGCAAGCAGAAACAGAAGCAGAAGAAG
AGGAAGTCGCGTGGGAACAGCAAGAAGAGCGGC---GGCCTCCACGACGCCGCCCACAACCCGCTTGCTCTCGACGTGCC
CGGGTAAGACCACAAGCATTTCGTTTTACCACCTTCGGTTCCACGCTTCAGGAATCACGCGTGTGAAATCGTCGTACGCT
GACAGACATTTTCTCCTCAGGCCGTCTTCGCCTGAAGAACTAGGCTTAGGGGAAGTGGAGGAGGCCGAGGTGCTGGACTA
CAGCGCCTTCGACAGTCAGGAGCCCAAGTGCGGAGGCGGCTTCCCACGCGAGATCGCCGCGGCGCGGACGTGTTTCCCCG
CCGCCGAGGCGTCATGAGTGCCGACGGTGGCCTGGGACCCCCG----GACCCCGGAGGAGGTGTAGATAGATACGGTTGG
TGTACATAAATAAGAGAAATCCAGGCTGTGTGAG----ATGAGATGAGATGCCCTTTCTATATAAGCTTTTGGCTG--GC
ATCCTTTATCAGTAAGTAGTGTAGTGTGCTACACGTTGTGTGCTGCTGTTCCGTTTGTAGCCACGGACTGGTGAGATCTG
AGAATAATTGAATCCCCTTTCGAGGGAGTTGTCATCCA-TTGTGCTAATCTTATCTTGGGTCCAATGTCATGCATTGCT-
------------------------------------------CATTACTGGTATCAGGTCACATCAGTCATCAGTGGCAG
ACTGTTGAGCTAGCTTGCTAGCTGCTTACTTAAAGCGGCAAGGCTGGTGTACACCATGAGAGGAGGAACGAAGCTCAAAT
CCGCCAGAGCAGAGCATTGATCCCTCCCTCATGGCCATGGCCGCCGCCACCGAGCAG---CTCCTCCCCCAGGAGCAGCG
CCGCCGTCG---ACAGGTACGGGGGCTCGCCGTCTCTGCCCTGCTGCCGGTGATGCTGCTCGCCGCCGCTGGCCCTCTCC
GTCCTAGGCTGTTCCGCGCGCCACTGCCGCAGGAGCGCGTCGCGCTCACCCTTCTCTCCGGCGCGAAGGAGAAGGGTGCA
GGTACACTATA--CTG-TATATATAGCTTTCTTCCTTCCAGCCATTCATCTGGAGTTTATTTGGTCTGGTTTCAGTGTGC
GTGGACGGAACACCGCCTGGTTACCACCTGCAGAGGGGCTCCGGTGACGGCGCCGACCGCTGGCTCGTCCATCTAGAGGT
ACCTACCGTACCATCCATCCATTATGCTATAATAATATTGCGCTGTTTT----TTCCATTTTCATGAGTTAGGCAAATCT
AATTAGCCGCCACCAAAAATATAGTATATTACAACAAAATTTCATAACCAAAATCTGCTTTGACAAA-AGAGAGACCCGG
CTCCTAACTTCTGTTGCCATCAAGCACATGCCTCCCTGTATCACC
>chr3A_40
---------------------------------------CGGACCGGATCTGCTTACTCCGTGGGCTCCGTTCATCGCCG
AGTGCTTCCACCCAGCTCTCCTCAGCAGCTCAGGTACTTTACAACCAGGGATCCC-------------------TCACAG
CATGTGCGATCCTGCCCTGTTTGTTTCTAGTAAGATCGCACAGAA-----TGAGCCGGCCACGATTGTCGGATGTATGAG
GCGGAGTGCCAACTAGAGAGTTCACAGAGTATAAAAGGGATGGGGGACTGGGGAGTTCAAGGGCTAGTAA----ACTCTT
CTGCCCAGCAGGATGAATCATCACTGGCCAGAGTTTTTTTCTTCTTCCTCGTAA----TGCAACAAGTTCCACCCTAGAG
AAAGAGTAGAGTGGGTTAATAGATTTGCAGATATCTGTTGTTTAGTT------TGATATGATATCTGTTATGATATCACA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TTCACAGATTTGTTAACCACTGATATGATATCTGTTATTTAGTTTGCGTTGTTGTTTTTGGTATCTGAA
TCAGTGGAAGTTGAC-TGGTTGCTATTATCTCTTCTGCCCGTCCTTGACGTAATGTAGTTAATTTGCTCAACAAGTGAGA
TTCATCATGTGAAGAAACTTGTTTGGTTATGAATTTAACCTTG----GCACACAACAAGTTGGTCAGAAATTTGACCAGC
CACTGGCACTTCTGGTTGCTTCTTATGACCCGTTGATTATATCTTAGACACATGCAAAGAG-------------------
------------ATCCCTGTCCACCGTCACACTCCGCTGACGACCATACC-----TTTATCGATTGATGGT-CTGTAGTT
TCTATGCATTTCCGCTAATATCTATCTGCCTTCTTGTAGTGACAAGCGACTCCATGGGTGATTTGGCTTGTGATTCTGAA
AGAGTGCTCATGGAGGGTCACGGTGCCTCTTCTGTCTGCAAGGATGACATGGTTCTGCTAGAGGAGGCACTTCCTCCAGC
TGGGCAGACTCCAGGTTCTTGTGTGGAGCTCCGTCATAACCTGGAGGGAACTCATAAACAAGCAAGGGATGCTGGTTCTT
TGGACACTGAAGTTGATACCTCAGGTTCTCCCAGCTCAGGAATAAAGAGAGGCAAAGGAGGTGATGGAAACTCCCATGCA
ATCTCCAATTACAGTGAACCAAAGTCCTCTTCACCTTATGAGCGCTTGCCGTCCTTTCCGGTGAGTTCAGCATGTTAGAT
TATGCCGTGATTGCTTCAGCTATGTC---GATGCTTTTAGCTTACTCTGTGTG-----GTATCTTTATGAACGGGGAACG
GGTGCTTGAGATCTAGTGCAGCCACTAGCTAAAGGGAAAGTAGGAAGGACACCAGGAAGATGGGTATTCTTGCTATAATA
TCCGGAAACCGATTTTCATAGGTGAAAAACG--TTTAGCAAACTCAAAAGGCAGTGATAATTTCTTGTGGCGTGTCACTA
ACCTCTCAGCCGTGTTCATGTTGTGAAACATGTT-CACCTATCCGCATTGAGAATACGGAAGTTCTAACTGACTTGTTTG
ATGTGACCATGCCATTTAATGTTCAGTTCCCAGGCCAATTATACTATTTGTTGCGCCTAATGAATTATTTTGGCCAGTTG
TC-------TAGGTTCATCAATCTATGGTGTGAATTTGAATGAGCTAAGCAAAC-TAAACTTGTAATGTTAAATTGATCA
TGAAACTGCGCTGAGT--AGTTCTGTTCCTACCTGCTATGATGGTGCTGTAGTGGTATTGGTACATTTAAGCTGGGCCTT
CACGGTAAGTTGATACTGTAATCGTGGCAGTTTTTCTGATTTATAATACAGTTTTATCGTTGCCTGACT-----------
---CACATTCCCTTCCTATTTTCTGTCTAGTCGACGTCAAGGCTTCTCGTCTCCGCTATGAAAGGAGGCCGTGAGAGAAG
CAGCGGTGAAGCATCGCCAACTGGAGCCCGCCACGTGAATTGGGCCTCAGATGTATATGACCCCCCAGTCACCTCTGTCG
ACCACACGGTGAAGGGCCACCAGCAGCGCTCCAGGTCCAGGAAGAAGGACAAGGGCAAGCAGAAACAGAAGCAGAAGAAG
AGGAAGTCGCGCGGGAACGGCAAGAAGA---GC---GGCCTCCACGATGCCGCCCACAACCCGC----------------
CGGGTAAGACCACAGACATTTCGTATTACCACCTTCGGTTCCACGCTCCGGGAATCATGCGTGTGAAATCATCGTACGCT
GACAGACATTTTCTCCTCAGGCCATCTTCGCCCGACGAACTAGGCTTAGGCGAAGTGGAGGAGGCCGAGGTGCTGGACTA
CAGCGCCTTCGACAGCCAGGAGCCCAAGTGCGGAGGCGGCTTCCCACACGAGATCGCCGCGGCGCGGACGTGTTTCCCCG
CTGCCGAGGCGTCATGAGGGCCGACGGTGGCCCAGGACCCC-GGCCAGACCCCAGAGGAGGTGTAGATAGATACGGTTGG
TGTACATAAATAAGAGAAATCCAGGCTGTGTGAGTGAGATGAGATGAGATGCCCTTTCTATATAAGCTTTTGGCTG--GC
GTCCTTTATTAGTAAGTAGTGTAGCGTGCTACACGTTGTGTGCTGCTGTTTCGTTTGTAGCCACGGACTGATGAGATGTG
CGAATAATTGAATCCCCTTTTGAGGTTGATGCCGAGTCCTTGTGCTAATCTTATCTTGGCTCCAGTGTCATCCATTGCTC
ATTGGTCTGTGATCAGC---AGCAGCAGCATCAGCTGCTCGACATTGCTGGTATCAGGTCACATCAGTCATCAGTGGCAG
ACTGTTGAGCTAGCTAGCTG---GGTTACTTAAAGCGGCAAGGCTGGTGTGCACCATGAGAGGAGGAACGAAGCTCAAAT
CCACCAGAGC------------------TCACGGCCATGGCCGCTGCCACCGAGCAGCTCCTCCTCCCCCAGGAGCAGCC
CCGCCGTCGCCCACCGGTATGGGGGCTCACGGTTGCTGCCCTTCTGCTGGTGCTGCTGCTCGCCGCCACCGGCCCTCTCC
GTCCTAGGCTGTTCCGCGCGCCGCCGCCAGCAGAGCGCGTCGCGCTTACCCTCCTCTCTGGCGCGAAGGAGAAGGGTGCA
GGTACACTATATACTG-TATATCTAGGTTTCTTCCTTCCAGCCATTCATCTGGAGTGAATTTGGTCTGGTTTCAGTGTGC
GTGGACGGAACACCGCCCGGTTACCACCTGCAGAGGGGCTCCGGCGACGGCGCCGACCGCTGGCTCGTCCATCTAGAGGT
ATGTACCATACCATCCATCAATTATGCTAT--TAACATTGCTCTGTTTT----TTCCCTTTTCATGAGTTAGGCAAATCA
AATTAGCGGCCACCAAAATTA---TATATTACAACAAGATGTCATTACCAAAATCTGCTTTGACAT-GAGAGAGACCCGG
CTCCTAACTTCTGTTGCCATCAAGCACATGCCTCCC---------
>chr3D_88
--------------------------------------------------------------------------------
--------------------CTCAGCACCTCAGGTAATTAACAGACAGGGATCGTGCCCTGCCGATCTGCGCCTTCACAG
CATCTGCGATCCTGCCCTGTTTGTTTCTAGTAAGATCACACCACATACGGTGAGCTGGCCACGATAGT------------
--------CCAAGTAGAGAGTTCACAAAGTAGAAAGGGTGGCATATACAGC-----------------------ACTCTT
CTGCACGGCATTTTACGCATTTGATTTTTCGGGCTAGTGTGGGGTCTCTTCCTGTTAGTGCAACAAGTGGCCCCCAAGAG
CAAGAGTGGAGTGGATTAGTAGAGGCATTTTTCACGCATTTTATTTTATCCGCTGATGC---------------------
-----------------GGTTGCTATGTACTCGATCTGTTCGACTAATGTGATTCATCATGCAAAACTCGTTTCAGTATG
AAGTAAACCTTGCTTGGCAAACTACAAGTTGGCTGGTAATCTGACCTGTCGCTGGCACCTCTCATCGCTTCTTATGAGCC
CTCAAATGTTTTAACCACAAGAAAAATATATCTCCGTCCACAGTCACACATTTGTGATAACCATAAACTTTGTCGATTGA
TGATATGTAGTTTCACAGATTTGTTATCCGCTGATATGATGGCTGTTATTTAATTTGTGTTGTGTTTTTTTGCATTTGAG
ACT-GACAGTGGAGCATGGCTGCTAATACCTATTCTGTCTGTCCTTGATGTAGCGCACTTAATTTGTTCAACGAATGAGA
TTCAGCATGCA---AAACTTGCTTGGTTATGAATTTAGCCTTGTTTGGCAACCAACAAGTTGGTCAGGAATTTGACCGGC
CATTGGCACTTCCTGTTGCTTCTTATGACCCTTTGATTATATTTTAGACACATGCAAATAG-------------------
------------ATCCCTGTCCACCGTCACAATCTGCTGATGACCATAAC-----TTTATGAATTGATGGT-CTCTAGTT
TCTATGCACTTCCGCTAATATCTAACTGCCTTCTTGCAGTGACAAGCGACTCCATGGGTGATTTGGCTTGTGATTCTGAA
AGAGTGCTGATGGAGGCTCACGGTGCCTCTTCTCTCTGCAAGGATGACATGGTTCTGCTGGAGGAGGCACTTCCTCCAGC
AGGGCAGACTCCAGGTTCTTGTGTGGAACTCCGTCATAACCAGGAGGGAACTCATAAACAAGCAAGGGATGCTGGTTCTT
TGGACAATGAAGTTGATATCTCAGGTTCTCCCAGCTCAGGAATAAAGAGAGGCAAAGGAGGTGATGGGAACTCCCGTGCA
ATCTCCGATCACAGTGAACCAAACGCCTCTTCAACTTATGAGCGCTTGCCGTCCTTTCCGGTGAGTTCAACATGTTAGAT
TATGCCGTGTTTGCTTCAGCTATGCC---GATGCTTTTAGCATACTCTGTGTG-----GTATCTTTATGAACAGGGAATG
GGTGCTTGAGATCTAGTGTAGCCACTAGCTAAAGGGAAAGTAGGAAGGACACCAGTAAGATGGGTGTTCTTGCTGTAATA
TCTTGGCATTGATTTTCGCTGGTGAAAAACGTTTTTAGCAAATTCAGAAGGCAGTGGTAATACGTTGTGGCGTGTTACTA
ACCTCTCAGCCGTGTTCATGTTGTGAAACATGTTTCACCTGTCCGCACTGGGAATTCGGAAGTTCTAACTGACTTGTTTG
ATGAGACCATGCCATTTAATTTTCAGTTCCCAGGCCAATTATACTATTTGTTGTGCCTAACGAATTATTGTGTCGAGCTG
TC-------TAGGCTCATCAATCTGTGGTGTTAATTTAAAAGAGCTAAGCAAGCTTAAACTTGTAATGTTAGATTGATCA
TGAAACTGTGCGGAGTTCAGTTCTGTTCCTACCTGCTATGGTGGTGCTGTAGTGGTATTGGTACATTTAAGCTGGGCCAT
CACGATAAGTTGGTACTGTAATCGTGGTAGCTTTTCTGATTGATAATACAGTTTTATCGTTCCCTGACT-----------
---CACATTCTCTTCCTATTTTCTGTCTAGTCGACGTCAAGGCTTCTCGTCTCTGCTATGAAAGGAGGCCGCGAGAGAAG
CGGCGGTGAAGCATCGCCAACTGGAGCCTGCCGCGTGAAGTGGGCCCCAGATGTATACGACCCCCCGGTCACCTCTGTCG
ACCACACGGTGAAGGGCCACCAACAGCGCTCCAGGTCCAGGAAGAAGGACAAGGGCAAGCAGAAACAGAAGCAGAAGAAG
AGGAAGTCGTGCGGGAACGGCAAGAAGA---GCGGTGGCCTCCATGATGCCGCCCACAACCCGCCTGCTCTCGACGTGCC
CGGGTAAGACCACAAACATTTCGTATTACCACCTTTGCTTCCATGCTTCAGGAATCCTGCGTGTGAAATCATCGTACGCT
GACAGACATTTTCTCCTCAGGCCATCTTCCCCCGACGAACTAGGCTTAGGCGAAGTGAAGGAGGCTGAGGTGCTGGACTA
CAGCGCCTTCGACGGTCAAGAGCCCAAGTGCGGAGGCGGCTTCTCACACGAGATCGCCGCGGCGCGGACGTGTTTCCCCG
CCGCCGAGGCGTCATGAGCGCCGACGGTGGCCCGGGACCCC-G----GACCCCGGAGGAGGTGTAGATAGATACGGTTGG
TGTACATAAATAAGAGAAATCCAGGCTGTGTG----AGATGAGATGAGATGCCCTTTCTATATAAGCTTTTGGCTGTGGC
ATCCTTTATTGGTAAGTAGTGTAGTGTGCTACACGTTGTGTGCTGCTGTTTCGTTTGTAGCCACGGACTGATGAGATCTG
AAAATAATTGAATCCTCTTTTGAGGGAGATGCCGAGTCCTTGTGCTAATCTTATCTTGGC---------ATCCATTGCTC
ACTGGTCAGTGATCAGCAGGAGCAGCAGCATCAGCTGCTCGACACTGCTGGTATCAGGTCACATCAGTCATCAGTGGCAG
ACTGTTGAGCTAGCTAGCTAGCTGGTTACTTAAAGTGGCAAGGCTGGTGTGCACGATGAGAGGAGGAACAAAGCTCAAAT
CCACCAGAGCAGAGCATTGATCCCTCCCTCACGGCCATGGCCGCCGCCACCGAGCAGCTCCTCCTCCCCCAGGAGCAGCC
CCGCCGCCGCCGACCGGTATGGGGGCTTGCCGTCGCTGCCCTACTGCTGGTGCTGCTGCTCGCCGCCGCCGGCCCTCTCC
GTCCTAGGCTGTTCCGCACGCCGCCGCCAGCAGAGCGCGTCGCGCTCACCCTCCTCTCCGGCGCGAAGGAGAAGGGCGCA
GGTACCTCGCACTATACTATATCTAGGTTTCTTCCTTCCAGCCATTCATCTG-AGTTAATTTGGTTT-GTTTCAGTGTGC
GTGGACGGAACACCGCCCGGTTACCACCTGCAGAGGGGCTCCGGCGACGGCGCCGACCGTTGGCTCGTCCATCTAGAGGT
ATGTACCATACCATCCATCAATTATGCC---ATAACATTGCTCTGTTTTTCTGTTCCCTTTTCATGAGTTAGGCAA-TCA
AATTAGCCGCCACCAAAAATA---TATATTGCAACAAAATTTCATAATCAAAATCTGCTTTGACATAGAGAGAGACCCGG
CTCCTAACTTCTGTCGCCATCAAGCACATGCCTCCCTGTGTCACC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S-S-------
-S---------------------------------------------------S----S-S------------SS-----
SS--S--------------------------------------------------------------S------------
--------SSS-S-S-S-----S-S---------------------------------------------SSSS------
S---S----------S-----------S----------------------------------------------------
-----S-----------SS--SS------------S------------------------SS--S----S-SS-SSSSSS
SSSSSSSSSSSSSSSSS--------------S---------S---S-----------------------------S----
---------------------------------S---------S--------------S--------------S---S--
----------S----------------S---S-----------------S--S------------------SSS------
----------------------------------------S-S---------------S--S-----------------S
-SSS-----------------------S----------S------------S------------------------SS--
SSSS----S-S--SSSSS--------------SS-S-------S--------SS-------S--SSS---S---------
-S--S------------------------S-S-S--S-S------SSSSSSSSSSSS-S-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S--------S--------S--S----SSSS-SS-SSSSSS--------------SSS--------
--S------S---S--------S----S-S----------------S----SS----------------S----------
-S-S-S-S----------------SSS-----------------------S-S---------------------------
S------S-----S----S-------------S-----S----S-S----------------SS-------S--------
----S--------S-----S-------------------------------------------------S----------
-------------S-----------SS-----------------S-S-S------------------------S---S-S
S----SS---------------S---SSS---------------------SS-SSSSS------S------S--SS--S-
-----S-S--S---S----------SSS-----S-----S--S---S-S-----------S-------------------
-----------S-----S-----------S-----------S------------SS--------------S--S------
S----------------S-------------------------S-----S---S---SS---------------------
------------------S------------------------SS--------------S---S-----------S----
-SSSSSSSS-------------------------------------------------------S-------S-------
-----------------------------S-SS----S-S--S------------------------------S---S--
---S---S-S-------------SS--S-SS-SSS-----------------------S------SS--SSSSSSSSSSS
SSS-----S-----------------------------------------------------------------------
S---------S---------------S---------S-----------------S-------------------------
--------------------------------------------------------------------------------
-----------S------S---------SSS----------------S----------------S---------------
---------------S--------S--------------------------------S------------S---------
-----------------------S--------S--S--------------S-----------------------------
-----------------------------------------------S--------------------------------
------------------S-------------S--------S--------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------S-------------------S---------
--------------------S-------S--S-SSSSS---------------------S----S------S--------
----------------------------------------------S---------------------------------
---------------S--------S-------------------------S-----------------------------
--S----------------------------S-----------------------------------------------S
--------------S----S--------------S-------S----S----S----------------S----------
----------------------S-S---SSSS--------------------S---------------------------
----------------------S---S------------------------------S----------------------
-----------------S--------------------------S-----------------------------------
-SS----S-----------S----------S----S-----S---------------S---------------------S
---------------------SSS-----------------------------------------S--------------
---------------------------------------S-----
>forward_962
--------------------------------------------------------------------------------
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--------------------------------------------------------------GTTGAAAACTTGACCGGC
CC------------------------------------------------------------------------------
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>reverse_2538
--------------------------------------------------------------------------------
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---------------------------------------------------------CGCGTGTGAAATCGTCGTAC---
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---------------------------------------------
>forward_1926
--------------------------------------------------------------------------------
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------------------------------------------------------------------ATTGTGTCCGGCTG
TGTAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>reverse_3746
--------------------------------------------------------------------------------
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-----------------------------------------------------------------AAAGAGAGACCCGGC
TCCTA----------------------------------------
