Multiple sequence alignment - TraesCS3B01G608300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G608300 chr3B 100.000 2997 0 0 1 2997 826653864 826650868 0.000000e+00 5535.0
1 TraesCS3B01G608300 chr3B 87.288 118 13 1 382 499 201522167 201522282 1.870000e-27 134.0
2 TraesCS3B01G608300 chr3D 85.340 2558 195 96 501 2962 612310813 612313286 0.000000e+00 2481.0
3 TraesCS3B01G608300 chr3D 87.770 139 8 3 81 214 612305851 612305985 1.440000e-33 154.0
4 TraesCS3B01G608300 chr3A 90.404 1313 83 27 1706 2997 747002682 747003972 0.000000e+00 1687.0
5 TraesCS3B01G608300 chr3A 77.817 568 46 36 527 1051 747001600 747002130 8.180000e-71 278.0
6 TraesCS3B01G608300 chr3A 85.019 267 31 4 1383 1649 747002324 747002581 2.290000e-66 263.0
7 TraesCS3B01G608300 chr3A 90.323 62 6 0 1251 1312 747002232 747002293 6.890000e-12 82.4
8 TraesCS3B01G608300 chr3A 100.000 29 0 0 54 82 747001571 747001599 2.000000e-03 54.7
9 TraesCS3B01G608300 chr6B 79.582 862 100 38 2059 2872 672368170 672367337 5.650000e-152 547.0
10 TraesCS3B01G608300 chr6B 80.312 320 39 12 2198 2497 672407171 672406856 1.400000e-53 220.0
11 TraesCS3B01G608300 chr6D 84.386 570 51 19 2322 2872 445767610 445767060 2.650000e-145 525.0
12 TraesCS3B01G608300 chr6D 79.242 554 59 30 2030 2543 445776207 445775670 4.790000e-88 335.0
13 TraesCS3B01G608300 chr6D 86.441 118 14 1 382 499 168246688 168246803 8.720000e-26 128.0
14 TraesCS3B01G608300 chr6A 89.494 257 21 2 2328 2580 592440304 592440050 1.340000e-83 320.0
15 TraesCS3B01G608300 chr6A 78.862 369 36 23 2069 2405 592455925 592455567 8.420000e-51 211.0
16 TraesCS3B01G608300 chr6A 82.051 234 24 9 2643 2872 592439619 592439400 1.830000e-42 183.0
17 TraesCS3B01G608300 chr6A 86.441 118 14 1 382 499 260121098 260120983 8.720000e-26 128.0
18 TraesCS3B01G608300 chr1B 88.136 118 12 1 382 499 127255501 127255386 4.030000e-29 139.0
19 TraesCS3B01G608300 chr7A 86.047 129 15 3 2871 2997 72961421 72961548 5.210000e-28 135.0
20 TraesCS3B01G608300 chrUn 86.441 118 14 1 382 499 93416853 93416738 8.720000e-26 128.0
21 TraesCS3B01G608300 chrUn 86.441 118 14 1 382 499 278886006 278885891 8.720000e-26 128.0
22 TraesCS3B01G608300 chr1D 86.441 118 14 1 382 499 144238196 144238311 8.720000e-26 128.0
23 TraesCS3B01G608300 chr1D 86.441 118 14 1 382 499 254521219 254521334 8.720000e-26 128.0
24 TraesCS3B01G608300 chr1A 86.441 118 14 1 382 499 584778602 584778717 8.720000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G608300 chr3B 826650868 826653864 2996 True 5535.00 5535 100.0000 1 2997 1 chr3B.!!$R1 2996
1 TraesCS3B01G608300 chr3D 612310813 612313286 2473 False 2481.00 2481 85.3400 501 2962 1 chr3D.!!$F2 2461
2 TraesCS3B01G608300 chr3A 747001571 747003972 2401 False 473.02 1687 88.7126 54 2997 5 chr3A.!!$F1 2943
3 TraesCS3B01G608300 chr6B 672367337 672368170 833 True 547.00 547 79.5820 2059 2872 1 chr6B.!!$R1 813
4 TraesCS3B01G608300 chr6D 445767060 445767610 550 True 525.00 525 84.3860 2322 2872 1 chr6D.!!$R1 550
5 TraesCS3B01G608300 chr6D 445775670 445776207 537 True 335.00 335 79.2420 2030 2543 1 chr6D.!!$R2 513
6 TraesCS3B01G608300 chr6A 592439400 592440304 904 True 251.50 320 85.7725 2328 2872 2 chr6A.!!$R3 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.026933 TGCACGTACGCAGTTGTTTG 59.973 50.0 16.72 4.44 37.78 2.93 F
38 39 0.026933 CACGTACGCAGTTGTTTGCA 59.973 50.0 16.72 0.00 37.78 4.08 F
39 40 0.027063 ACGTACGCAGTTGTTTGCAC 59.973 50.0 16.72 0.00 37.78 4.57 F
295 296 0.033504 AACCGAAGTCGCTCACACAT 59.966 50.0 0.00 0.00 38.18 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1929 0.179171 CGTCGTCGATAGCAACTGGT 60.179 55.000 0.00 0.0 39.71 4.00 R
1942 2157 2.194056 CTGCTACCATGGCCCCAG 59.806 66.667 13.04 11.5 0.00 4.45 R
1972 2188 8.963725 TCCTAGTATCGTTGATGAGTAGAAAAA 58.036 33.333 0.00 0.0 0.00 1.94 R
2166 2405 2.422746 ACCTCCTAATTCCCCATGGAG 58.577 52.381 15.22 0.0 43.07 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.643387 GTCGGGCCCAACTGCACT 62.643 66.667 24.92 0.00 30.47 4.40
18 19 4.641645 TCGGGCCCAACTGCACTG 62.642 66.667 24.92 1.11 30.47 3.66
21 22 3.982241 GGCCCAACTGCACTGCAC 61.982 66.667 0.00 0.00 33.79 4.57
22 23 4.332637 GCCCAACTGCACTGCACG 62.333 66.667 0.00 0.00 33.79 5.34
23 24 2.901840 CCCAACTGCACTGCACGT 60.902 61.111 0.00 0.03 33.79 4.49
24 25 1.596752 CCCAACTGCACTGCACGTA 60.597 57.895 0.00 0.00 33.79 3.57
25 26 1.569493 CCAACTGCACTGCACGTAC 59.431 57.895 0.00 0.00 33.79 3.67
26 27 1.201578 CAACTGCACTGCACGTACG 59.798 57.895 15.01 15.01 33.79 3.67
27 28 2.594962 AACTGCACTGCACGTACGC 61.595 57.895 16.72 0.00 33.79 4.42
28 29 3.035503 CTGCACTGCACGTACGCA 61.036 61.111 16.72 5.12 40.32 5.24
34 35 4.112086 TGCACGTACGCAGTTGTT 57.888 50.000 16.72 0.00 37.78 2.83
35 36 2.385237 TGCACGTACGCAGTTGTTT 58.615 47.368 16.72 0.00 37.78 2.83
36 37 0.026933 TGCACGTACGCAGTTGTTTG 59.973 50.000 16.72 4.44 37.78 2.93
37 38 1.259544 GCACGTACGCAGTTGTTTGC 61.260 55.000 16.72 11.29 37.78 3.68
38 39 0.026933 CACGTACGCAGTTGTTTGCA 59.973 50.000 16.72 0.00 37.78 4.08
39 40 0.027063 ACGTACGCAGTTGTTTGCAC 59.973 50.000 16.72 0.00 37.78 4.57
40 41 0.984932 CGTACGCAGTTGTTTGCACG 60.985 55.000 0.52 0.00 37.78 5.34
41 42 0.656205 GTACGCAGTTGTTTGCACGG 60.656 55.000 0.00 0.00 37.78 4.94
42 43 1.090625 TACGCAGTTGTTTGCACGGT 61.091 50.000 0.00 0.00 37.78 4.83
43 44 1.654137 CGCAGTTGTTTGCACGGTC 60.654 57.895 0.00 0.00 44.28 4.79
44 45 1.299089 GCAGTTGTTTGCACGGTCC 60.299 57.895 0.00 0.00 43.53 4.46
45 46 1.999071 GCAGTTGTTTGCACGGTCCA 61.999 55.000 0.00 0.00 43.53 4.02
46 47 0.453793 CAGTTGTTTGCACGGTCCAA 59.546 50.000 0.00 0.00 0.00 3.53
47 48 1.066908 CAGTTGTTTGCACGGTCCAAT 59.933 47.619 0.00 0.00 0.00 3.16
48 49 1.066908 AGTTGTTTGCACGGTCCAATG 59.933 47.619 0.00 0.00 0.00 2.82
49 50 1.066303 GTTGTTTGCACGGTCCAATGA 59.934 47.619 0.00 0.00 0.00 2.57
50 51 0.950836 TGTTTGCACGGTCCAATGAG 59.049 50.000 0.00 0.00 0.00 2.90
51 52 1.234821 GTTTGCACGGTCCAATGAGA 58.765 50.000 0.00 0.00 0.00 3.27
52 53 1.197721 GTTTGCACGGTCCAATGAGAG 59.802 52.381 0.00 0.00 0.00 3.20
85 86 2.887360 GCATGCATGCGGGACTTT 59.113 55.556 33.99 0.00 44.67 2.66
86 87 1.517694 GCATGCATGCGGGACTTTG 60.518 57.895 33.99 3.92 44.67 2.77
87 88 1.140161 CATGCATGCGGGACTTTGG 59.860 57.895 14.93 0.00 0.00 3.28
88 89 1.304381 ATGCATGCGGGACTTTGGT 60.304 52.632 14.09 0.00 0.00 3.67
89 90 1.597797 ATGCATGCGGGACTTTGGTG 61.598 55.000 14.09 0.00 0.00 4.17
90 91 2.568090 CATGCGGGACTTTGGTGC 59.432 61.111 0.00 0.00 0.00 5.01
91 92 2.115052 ATGCGGGACTTTGGTGCA 59.885 55.556 0.00 0.00 40.23 4.57
92 93 1.530419 ATGCGGGACTTTGGTGCAA 60.530 52.632 0.00 0.00 39.26 4.08
93 94 1.805428 ATGCGGGACTTTGGTGCAAC 61.805 55.000 0.00 0.00 39.26 4.17
116 117 1.352056 CATGCATGCAGAGCAGTCG 59.648 57.895 26.69 8.89 46.36 4.18
117 118 2.470362 ATGCATGCAGAGCAGTCGC 61.470 57.895 26.69 1.26 46.36 5.19
118 119 3.873883 GCATGCAGAGCAGTCGCC 61.874 66.667 14.21 0.00 43.65 5.54
119 120 3.561213 CATGCAGAGCAGTCGCCG 61.561 66.667 0.00 0.00 43.65 6.46
145 146 4.101790 GTGCGTTGCGGGGACATG 62.102 66.667 0.00 0.00 0.00 3.21
146 147 4.634703 TGCGTTGCGGGGACATGT 62.635 61.111 0.00 0.00 0.00 3.21
147 148 4.101790 GCGTTGCGGGGACATGTG 62.102 66.667 1.15 0.00 0.00 3.21
148 149 3.430862 CGTTGCGGGGACATGTGG 61.431 66.667 1.15 0.00 0.00 4.17
149 150 3.061848 GTTGCGGGGACATGTGGG 61.062 66.667 1.15 0.00 0.00 4.61
157 158 4.344865 GACATGTGGGCCCGGTGT 62.345 66.667 22.18 22.18 0.00 4.16
158 159 2.931105 ACATGTGGGCCCGGTGTA 60.931 61.111 21.07 5.35 0.00 2.90
159 160 2.353189 CATGTGGGCCCGGTGTAA 59.647 61.111 19.37 0.00 0.00 2.41
160 161 2.043980 CATGTGGGCCCGGTGTAAC 61.044 63.158 19.37 9.24 0.00 2.50
161 162 2.530672 ATGTGGGCCCGGTGTAACA 61.531 57.895 19.37 15.46 39.98 2.41
162 163 2.670592 GTGGGCCCGGTGTAACAC 60.671 66.667 19.37 2.50 39.98 3.32
163 164 3.169242 TGGGCCCGGTGTAACACA 61.169 61.111 19.37 0.00 39.98 3.72
164 165 2.353573 GGGCCCGGTGTAACACAT 59.646 61.111 5.69 0.00 39.98 3.21
165 166 1.747745 GGGCCCGGTGTAACACATC 60.748 63.158 5.69 0.00 39.98 3.06
166 167 1.747745 GGCCCGGTGTAACACATCC 60.748 63.158 0.00 1.84 39.98 3.51
167 168 2.104253 GCCCGGTGTAACACATCCG 61.104 63.158 0.00 12.03 40.17 4.18
169 170 4.195308 CGGTGTAACACATCCGGG 57.805 61.111 0.00 0.00 39.98 5.73
170 171 1.294138 CGGTGTAACACATCCGGGT 59.706 57.895 0.00 0.00 39.98 5.28
171 172 0.738412 CGGTGTAACACATCCGGGTC 60.738 60.000 0.00 0.00 39.98 4.46
172 173 0.738412 GGTGTAACACATCCGGGTCG 60.738 60.000 0.00 0.00 39.98 4.79
173 174 1.079681 TGTAACACATCCGGGTCGC 60.080 57.895 0.00 0.00 0.00 5.19
174 175 1.079681 GTAACACATCCGGGTCGCA 60.080 57.895 0.00 0.00 0.00 5.10
175 176 1.079681 TAACACATCCGGGTCGCAC 60.080 57.895 0.00 0.00 0.00 5.34
176 177 2.510064 TAACACATCCGGGTCGCACC 62.510 60.000 0.00 0.00 37.60 5.01
189 190 4.947147 GCACCGCAACCACCCTCA 62.947 66.667 0.00 0.00 0.00 3.86
190 191 2.978010 CACCGCAACCACCCTCAC 60.978 66.667 0.00 0.00 0.00 3.51
191 192 4.265056 ACCGCAACCACCCTCACC 62.265 66.667 0.00 0.00 0.00 4.02
192 193 3.953775 CCGCAACCACCCTCACCT 61.954 66.667 0.00 0.00 0.00 4.00
193 194 2.669569 CGCAACCACCCTCACCTG 60.670 66.667 0.00 0.00 0.00 4.00
194 195 2.836154 GCAACCACCCTCACCTGA 59.164 61.111 0.00 0.00 0.00 3.86
195 196 1.600916 GCAACCACCCTCACCTGAC 60.601 63.158 0.00 0.00 0.00 3.51
196 197 1.301716 CAACCACCCTCACCTGACG 60.302 63.158 0.00 0.00 0.00 4.35
197 198 2.516888 AACCACCCTCACCTGACGG 61.517 63.158 0.00 0.00 0.00 4.79
198 199 3.706373 CCACCCTCACCTGACGGG 61.706 72.222 0.00 0.00 43.79 5.28
199 200 3.706373 CACCCTCACCTGACGGGG 61.706 72.222 5.03 6.47 42.44 5.73
218 219 2.588596 CCTCGGCGTGCATGCATA 60.589 61.111 30.79 17.34 36.28 3.14
219 220 1.962822 CCTCGGCGTGCATGCATAT 60.963 57.895 30.79 0.00 36.28 1.78
220 221 0.670239 CCTCGGCGTGCATGCATATA 60.670 55.000 30.79 12.51 36.28 0.86
221 222 0.439985 CTCGGCGTGCATGCATATAC 59.560 55.000 30.79 13.18 36.28 1.47
222 223 1.130411 CGGCGTGCATGCATATACG 59.870 57.895 30.79 22.58 39.37 3.06
223 224 1.281566 CGGCGTGCATGCATATACGA 61.282 55.000 30.79 0.00 38.72 3.43
224 225 0.865111 GGCGTGCATGCATATACGAA 59.135 50.000 30.79 0.00 38.72 3.85
225 226 1.398451 GGCGTGCATGCATATACGAAC 60.398 52.381 30.79 19.50 38.72 3.95
226 227 1.260297 GCGTGCATGCATATACGAACA 59.740 47.619 28.46 6.48 38.72 3.18
227 228 2.286125 GCGTGCATGCATATACGAACAA 60.286 45.455 28.46 0.00 38.72 2.83
228 229 3.787146 GCGTGCATGCATATACGAACAAA 60.787 43.478 28.46 0.00 38.72 2.83
229 230 4.338596 CGTGCATGCATATACGAACAAAA 58.661 39.130 25.64 0.00 38.72 2.44
230 231 4.790651 CGTGCATGCATATACGAACAAAAA 59.209 37.500 25.64 0.00 38.72 1.94
284 285 6.740411 TTTTTAACACAGTACAACCGAAGT 57.260 33.333 0.00 0.00 0.00 3.01
285 286 5.971895 TTTAACACAGTACAACCGAAGTC 57.028 39.130 0.00 0.00 0.00 3.01
286 287 2.129823 ACACAGTACAACCGAAGTCG 57.870 50.000 0.00 0.00 39.44 4.18
287 288 0.782384 CACAGTACAACCGAAGTCGC 59.218 55.000 0.00 0.00 38.18 5.19
288 289 0.672342 ACAGTACAACCGAAGTCGCT 59.328 50.000 0.00 0.00 38.18 4.93
289 290 1.335689 ACAGTACAACCGAAGTCGCTC 60.336 52.381 0.00 0.00 38.18 5.03
290 291 0.956633 AGTACAACCGAAGTCGCTCA 59.043 50.000 0.00 0.00 38.18 4.26
291 292 1.058404 GTACAACCGAAGTCGCTCAC 58.942 55.000 0.00 0.00 38.18 3.51
292 293 0.669619 TACAACCGAAGTCGCTCACA 59.330 50.000 0.00 0.00 38.18 3.58
293 294 0.874607 ACAACCGAAGTCGCTCACAC 60.875 55.000 0.00 0.00 38.18 3.82
294 295 0.874175 CAACCGAAGTCGCTCACACA 60.874 55.000 0.00 0.00 38.18 3.72
295 296 0.033504 AACCGAAGTCGCTCACACAT 59.966 50.000 0.00 0.00 38.18 3.21
296 297 0.885879 ACCGAAGTCGCTCACACATA 59.114 50.000 0.00 0.00 38.18 2.29
297 298 1.135373 ACCGAAGTCGCTCACACATAG 60.135 52.381 0.00 0.00 38.18 2.23
298 299 1.550065 CGAAGTCGCTCACACATAGG 58.450 55.000 0.00 0.00 0.00 2.57
299 300 1.132453 CGAAGTCGCTCACACATAGGA 59.868 52.381 0.00 0.00 0.00 2.94
300 301 2.792890 CGAAGTCGCTCACACATAGGAG 60.793 54.545 0.00 0.00 0.00 3.69
308 309 4.926140 CTCACACATAGGAGCATACTCA 57.074 45.455 0.00 0.00 45.42 3.41
309 310 4.615949 CTCACACATAGGAGCATACTCAC 58.384 47.826 0.00 0.00 45.42 3.51
310 311 4.023291 TCACACATAGGAGCATACTCACA 58.977 43.478 0.00 0.00 45.42 3.58
311 312 4.115516 CACACATAGGAGCATACTCACAC 58.884 47.826 0.00 0.00 45.42 3.82
312 313 4.026744 ACACATAGGAGCATACTCACACT 58.973 43.478 0.00 0.00 45.42 3.55
313 314 4.142071 ACACATAGGAGCATACTCACACTG 60.142 45.833 0.00 0.00 45.42 3.66
314 315 4.026744 ACATAGGAGCATACTCACACTGT 58.973 43.478 0.00 0.00 45.42 3.55
315 316 4.467795 ACATAGGAGCATACTCACACTGTT 59.532 41.667 0.00 0.00 45.42 3.16
316 317 3.601443 AGGAGCATACTCACACTGTTC 57.399 47.619 0.00 0.00 45.42 3.18
317 318 2.234908 AGGAGCATACTCACACTGTTCC 59.765 50.000 0.00 0.00 45.42 3.62
318 319 2.234908 GGAGCATACTCACACTGTTCCT 59.765 50.000 0.00 0.00 45.42 3.36
319 320 3.307059 GGAGCATACTCACACTGTTCCTT 60.307 47.826 0.00 0.00 45.42 3.36
320 321 4.319177 GAGCATACTCACACTGTTCCTTT 58.681 43.478 0.00 0.00 42.93 3.11
321 322 4.718961 AGCATACTCACACTGTTCCTTTT 58.281 39.130 0.00 0.00 0.00 2.27
322 323 5.133221 AGCATACTCACACTGTTCCTTTTT 58.867 37.500 0.00 0.00 0.00 1.94
351 352 9.920946 AATCATGTGTACATTTCTTATAGGGTT 57.079 29.630 0.00 0.00 33.61 4.11
352 353 9.920946 ATCATGTGTACATTTCTTATAGGGTTT 57.079 29.630 0.00 0.00 33.61 3.27
363 364 9.780186 ATTTCTTATAGGGTTTAGTACATCTGC 57.220 33.333 0.00 0.00 0.00 4.26
364 365 7.907841 TCTTATAGGGTTTAGTACATCTGCA 57.092 36.000 0.00 0.00 0.00 4.41
365 366 8.313944 TCTTATAGGGTTTAGTACATCTGCAA 57.686 34.615 0.00 0.00 0.00 4.08
366 367 8.934697 TCTTATAGGGTTTAGTACATCTGCAAT 58.065 33.333 0.00 0.00 0.00 3.56
368 369 9.991906 TTATAGGGTTTAGTACATCTGCAATAC 57.008 33.333 0.00 0.00 0.00 1.89
369 370 6.561519 AGGGTTTAGTACATCTGCAATACT 57.438 37.500 0.00 0.00 33.73 2.12
370 371 6.349300 AGGGTTTAGTACATCTGCAATACTG 58.651 40.000 0.00 0.00 31.65 2.74
371 372 6.070194 AGGGTTTAGTACATCTGCAATACTGT 60.070 38.462 0.00 3.54 31.65 3.55
372 373 6.258068 GGGTTTAGTACATCTGCAATACTGTC 59.742 42.308 0.00 2.17 31.65 3.51
373 374 6.258068 GGTTTAGTACATCTGCAATACTGTCC 59.742 42.308 0.00 5.96 31.65 4.02
374 375 6.791867 TTAGTACATCTGCAATACTGTCCT 57.208 37.500 0.00 0.85 31.65 3.85
375 376 5.683876 AGTACATCTGCAATACTGTCCTT 57.316 39.130 0.00 0.00 0.00 3.36
376 377 5.423015 AGTACATCTGCAATACTGTCCTTG 58.577 41.667 0.00 0.00 0.00 3.61
377 378 3.012518 ACATCTGCAATACTGTCCTTGC 58.987 45.455 16.65 16.65 46.19 4.01
378 379 2.113860 TCTGCAATACTGTCCTTGCC 57.886 50.000 19.23 7.54 45.58 4.52
379 380 1.098050 CTGCAATACTGTCCTTGCCC 58.902 55.000 19.23 1.64 45.58 5.36
380 381 0.403655 TGCAATACTGTCCTTGCCCA 59.596 50.000 19.23 5.27 45.58 5.36
381 382 1.005805 TGCAATACTGTCCTTGCCCAT 59.994 47.619 19.23 0.00 45.58 4.00
382 383 2.240921 TGCAATACTGTCCTTGCCCATA 59.759 45.455 19.23 4.46 45.58 2.74
383 384 3.287222 GCAATACTGTCCTTGCCCATAA 58.713 45.455 13.93 0.00 41.45 1.90
384 385 3.316308 GCAATACTGTCCTTGCCCATAAG 59.684 47.826 13.93 0.00 41.45 1.73
385 386 4.780815 CAATACTGTCCTTGCCCATAAGA 58.219 43.478 0.00 0.00 0.00 2.10
386 387 2.789409 ACTGTCCTTGCCCATAAGAC 57.211 50.000 0.00 0.00 0.00 3.01
387 388 1.985159 ACTGTCCTTGCCCATAAGACA 59.015 47.619 0.00 0.00 0.00 3.41
388 389 2.578021 ACTGTCCTTGCCCATAAGACAT 59.422 45.455 0.00 0.00 0.00 3.06
389 390 2.947652 CTGTCCTTGCCCATAAGACATG 59.052 50.000 0.00 0.00 0.00 3.21
390 391 2.308570 TGTCCTTGCCCATAAGACATGT 59.691 45.455 0.00 0.00 0.00 3.21
391 392 3.521531 TGTCCTTGCCCATAAGACATGTA 59.478 43.478 0.00 0.00 0.00 2.29
392 393 3.877508 GTCCTTGCCCATAAGACATGTAC 59.122 47.826 0.00 0.00 0.00 2.90
393 394 2.872245 CCTTGCCCATAAGACATGTACG 59.128 50.000 0.00 0.00 0.00 3.67
394 395 3.531538 CTTGCCCATAAGACATGTACGT 58.468 45.455 0.00 0.00 0.00 3.57
395 396 4.442332 CCTTGCCCATAAGACATGTACGTA 60.442 45.833 0.00 0.00 0.00 3.57
396 397 4.739587 TGCCCATAAGACATGTACGTAA 57.260 40.909 0.00 0.00 0.00 3.18
397 398 5.087391 TGCCCATAAGACATGTACGTAAA 57.913 39.130 0.00 0.00 0.00 2.01
398 399 5.489249 TGCCCATAAGACATGTACGTAAAA 58.511 37.500 0.00 0.00 0.00 1.52
399 400 5.352016 TGCCCATAAGACATGTACGTAAAAC 59.648 40.000 0.00 0.00 0.00 2.43
400 401 5.352016 GCCCATAAGACATGTACGTAAAACA 59.648 40.000 0.00 0.00 0.00 2.83
401 402 6.673796 GCCCATAAGACATGTACGTAAAACAC 60.674 42.308 0.00 0.00 0.00 3.32
402 403 6.369340 CCCATAAGACATGTACGTAAAACACA 59.631 38.462 0.00 0.00 0.00 3.72
403 404 7.412563 CCCATAAGACATGTACGTAAAACACAG 60.413 40.741 0.00 0.00 0.00 3.66
404 405 7.117236 CCATAAGACATGTACGTAAAACACAGT 59.883 37.037 0.00 0.00 0.00 3.55
405 406 6.520792 AAGACATGTACGTAAAACACAGTC 57.479 37.500 0.00 12.81 36.35 3.51
406 407 5.839621 AGACATGTACGTAAAACACAGTCT 58.160 37.500 15.66 15.66 39.13 3.24
407 408 6.973843 AGACATGTACGTAAAACACAGTCTA 58.026 36.000 18.14 0.00 40.71 2.59
408 409 6.860023 AGACATGTACGTAAAACACAGTCTAC 59.140 38.462 18.14 0.00 40.71 2.59
409 410 6.742109 ACATGTACGTAAAACACAGTCTACT 58.258 36.000 0.00 0.00 0.00 2.57
410 411 7.874940 ACATGTACGTAAAACACAGTCTACTA 58.125 34.615 0.00 0.00 0.00 1.82
411 412 8.517878 ACATGTACGTAAAACACAGTCTACTAT 58.482 33.333 0.00 0.00 0.00 2.12
412 413 9.992910 CATGTACGTAAAACACAGTCTACTATA 57.007 33.333 0.00 0.00 0.00 1.31
440 441 7.838771 ATTCTTTCATCTTAATTTTGCCTGC 57.161 32.000 0.00 0.00 0.00 4.85
441 442 6.594788 TCTTTCATCTTAATTTTGCCTGCT 57.405 33.333 0.00 0.00 0.00 4.24
442 443 6.392354 TCTTTCATCTTAATTTTGCCTGCTG 58.608 36.000 0.00 0.00 0.00 4.41
443 444 4.724074 TCATCTTAATTTTGCCTGCTGG 57.276 40.909 5.03 5.03 0.00 4.85
444 445 4.088634 TCATCTTAATTTTGCCTGCTGGT 58.911 39.130 11.69 0.00 35.27 4.00
445 446 5.260424 TCATCTTAATTTTGCCTGCTGGTA 58.740 37.500 11.69 3.54 35.27 3.25
446 447 5.893255 TCATCTTAATTTTGCCTGCTGGTAT 59.107 36.000 11.69 0.00 35.27 2.73
447 448 6.380846 TCATCTTAATTTTGCCTGCTGGTATT 59.619 34.615 11.69 8.56 35.27 1.89
448 449 6.603940 TCTTAATTTTGCCTGCTGGTATTT 57.396 33.333 11.69 4.31 35.27 1.40
449 450 7.003402 TCTTAATTTTGCCTGCTGGTATTTT 57.997 32.000 11.69 3.98 35.27 1.82
450 451 7.449247 TCTTAATTTTGCCTGCTGGTATTTTT 58.551 30.769 11.69 3.66 35.27 1.94
451 452 8.589338 TCTTAATTTTGCCTGCTGGTATTTTTA 58.411 29.630 11.69 2.79 35.27 1.52
452 453 8.541133 TTAATTTTGCCTGCTGGTATTTTTAC 57.459 30.769 11.69 0.00 35.27 2.01
453 454 5.537300 TTTTGCCTGCTGGTATTTTTACA 57.463 34.783 11.69 0.00 35.27 2.41
454 455 5.537300 TTTGCCTGCTGGTATTTTTACAA 57.463 34.783 11.69 1.57 35.27 2.41
455 456 5.736951 TTGCCTGCTGGTATTTTTACAAT 57.263 34.783 11.69 0.00 35.27 2.71
456 457 6.842437 TTGCCTGCTGGTATTTTTACAATA 57.158 33.333 11.69 0.00 35.27 1.90
457 458 6.202516 TGCCTGCTGGTATTTTTACAATAC 57.797 37.500 11.69 0.00 35.27 1.89
458 459 5.949354 TGCCTGCTGGTATTTTTACAATACT 59.051 36.000 11.69 0.00 34.44 2.12
459 460 6.435904 TGCCTGCTGGTATTTTTACAATACTT 59.564 34.615 11.69 0.00 34.44 2.24
460 461 6.751888 GCCTGCTGGTATTTTTACAATACTTG 59.248 38.462 11.69 0.00 34.44 3.16
461 462 7.576856 GCCTGCTGGTATTTTTACAATACTTGT 60.577 37.037 11.69 0.00 40.62 3.16
462 463 7.754924 CCTGCTGGTATTTTTACAATACTTGTG 59.245 37.037 0.51 0.00 45.03 3.33
463 464 7.598278 TGCTGGTATTTTTACAATACTTGTGG 58.402 34.615 2.85 0.00 45.03 4.17
464 465 7.448777 TGCTGGTATTTTTACAATACTTGTGGA 59.551 33.333 2.85 0.00 45.03 4.02
465 466 7.968405 GCTGGTATTTTTACAATACTTGTGGAG 59.032 37.037 2.85 0.00 45.03 3.86
466 467 7.822658 TGGTATTTTTACAATACTTGTGGAGC 58.177 34.615 2.85 0.00 45.03 4.70
467 468 7.668052 TGGTATTTTTACAATACTTGTGGAGCT 59.332 33.333 2.85 0.00 45.03 4.09
468 469 9.169592 GGTATTTTTACAATACTTGTGGAGCTA 57.830 33.333 2.85 0.00 45.03 3.32
472 473 8.856153 TTTTACAATACTTGTGGAGCTAATGA 57.144 30.769 2.85 0.00 45.03 2.57
473 474 8.856153 TTTACAATACTTGTGGAGCTAATGAA 57.144 30.769 2.85 0.00 45.03 2.57
474 475 8.856153 TTACAATACTTGTGGAGCTAATGAAA 57.144 30.769 2.85 0.00 45.03 2.69
475 476 7.145932 ACAATACTTGTGGAGCTAATGAAAC 57.854 36.000 0.00 0.00 43.48 2.78
476 477 6.942576 ACAATACTTGTGGAGCTAATGAAACT 59.057 34.615 0.00 0.00 43.48 2.66
477 478 8.100791 ACAATACTTGTGGAGCTAATGAAACTA 58.899 33.333 0.00 0.00 43.48 2.24
478 479 9.113838 CAATACTTGTGGAGCTAATGAAACTAT 57.886 33.333 0.00 0.00 0.00 2.12
479 480 9.686683 AATACTTGTGGAGCTAATGAAACTATT 57.313 29.630 0.00 0.00 0.00 1.73
480 481 9.686683 ATACTTGTGGAGCTAATGAAACTATTT 57.313 29.630 0.00 0.00 0.00 1.40
481 482 8.409358 ACTTGTGGAGCTAATGAAACTATTTT 57.591 30.769 0.00 0.00 0.00 1.82
482 483 8.299570 ACTTGTGGAGCTAATGAAACTATTTTG 58.700 33.333 0.00 0.00 0.00 2.44
483 484 7.156876 TGTGGAGCTAATGAAACTATTTTGG 57.843 36.000 0.00 0.00 0.00 3.28
484 485 6.719370 TGTGGAGCTAATGAAACTATTTTGGT 59.281 34.615 0.00 0.00 0.00 3.67
485 486 7.885922 TGTGGAGCTAATGAAACTATTTTGGTA 59.114 33.333 0.00 0.00 0.00 3.25
486 487 8.736244 GTGGAGCTAATGAAACTATTTTGGTAA 58.264 33.333 0.00 0.00 0.00 2.85
487 488 9.303116 TGGAGCTAATGAAACTATTTTGGTAAA 57.697 29.630 0.00 0.00 0.00 2.01
499 500 8.687824 ACTATTTTGGTAAAATTCAATGCTCG 57.312 30.769 5.02 0.00 41.16 5.03
507 508 6.473455 GGTAAAATTCAATGCTCGAAATGGAG 59.527 38.462 0.00 0.00 37.11 3.86
508 509 4.644103 AATTCAATGCTCGAAATGGAGG 57.356 40.909 0.00 0.00 34.56 4.30
522 523 1.145900 TGGAGGAAATGAAGGGGCCA 61.146 55.000 4.39 0.00 0.00 5.36
639 640 2.704065 AGGACGGTCCTTTCTTTCTTCA 59.296 45.455 23.90 0.00 46.91 3.02
640 641 3.328050 AGGACGGTCCTTTCTTTCTTCAT 59.672 43.478 23.90 0.00 46.91 2.57
641 642 4.530946 AGGACGGTCCTTTCTTTCTTCATA 59.469 41.667 23.90 0.00 46.91 2.15
642 643 4.870991 GGACGGTCCTTTCTTTCTTCATAG 59.129 45.833 19.92 0.00 32.53 2.23
643 644 4.833390 ACGGTCCTTTCTTTCTTCATAGG 58.167 43.478 0.00 0.00 0.00 2.57
644 645 4.530946 ACGGTCCTTTCTTTCTTCATAGGA 59.469 41.667 0.00 0.00 0.00 2.94
645 646 4.870991 CGGTCCTTTCTTTCTTCATAGGAC 59.129 45.833 9.94 9.94 46.90 3.85
646 647 5.337652 CGGTCCTTTCTTTCTTCATAGGACT 60.338 44.000 16.13 0.00 46.83 3.85
647 648 6.127423 CGGTCCTTTCTTTCTTCATAGGACTA 60.127 42.308 16.13 0.00 46.83 2.59
648 649 7.269316 GGTCCTTTCTTTCTTCATAGGACTAG 58.731 42.308 16.13 0.00 46.83 2.57
649 650 7.269316 GTCCTTTCTTTCTTCATAGGACTAGG 58.731 42.308 10.92 0.00 45.15 3.02
650 651 7.124448 GTCCTTTCTTTCTTCATAGGACTAGGA 59.876 40.741 10.92 0.00 45.15 2.94
666 667 3.878667 GAAGGATCCCCGGCCAGG 61.879 72.222 8.55 0.00 37.58 4.45
689 690 4.023365 GCAACCAGCATCTTCTCATAATCC 60.023 45.833 0.00 0.00 44.79 3.01
696 697 4.704057 GCATCTTCTCATAATCCCATTCCC 59.296 45.833 0.00 0.00 0.00 3.97
767 799 4.641954 CGATTTCGTGTTTCTCATCCAAG 58.358 43.478 0.00 0.00 34.11 3.61
811 843 4.555313 CGTGATGGCACATTCCATATGTTC 60.555 45.833 1.24 0.00 46.29 3.18
875 928 3.799917 GCAAAACCACATTGACTCCTTGG 60.800 47.826 0.00 0.00 0.00 3.61
889 942 1.583611 TCCTTGGCCTCCCTTCCTATA 59.416 52.381 3.32 0.00 0.00 1.31
892 945 2.579624 TGGCCTCCCTTCCTATACAA 57.420 50.000 3.32 0.00 0.00 2.41
893 946 2.853430 TGGCCTCCCTTCCTATACAAA 58.147 47.619 3.32 0.00 0.00 2.83
894 947 3.194620 TGGCCTCCCTTCCTATACAAAA 58.805 45.455 3.32 0.00 0.00 2.44
895 948 3.594232 TGGCCTCCCTTCCTATACAAAAA 59.406 43.478 3.32 0.00 0.00 1.94
900 953 6.299922 CCTCCCTTCCTATACAAAAATCTCC 58.700 44.000 0.00 0.00 0.00 3.71
904 957 6.101881 CCCTTCCTATACAAAAATCTCCCTCT 59.898 42.308 0.00 0.00 0.00 3.69
905 958 7.220740 CCTTCCTATACAAAAATCTCCCTCTC 58.779 42.308 0.00 0.00 0.00 3.20
906 959 6.749036 TCCTATACAAAAATCTCCCTCTCC 57.251 41.667 0.00 0.00 0.00 3.71
926 991 3.778629 TCCCTACGGCTTCCTTCTTATTT 59.221 43.478 0.00 0.00 0.00 1.40
928 993 4.383770 CCCTACGGCTTCCTTCTTATTTCA 60.384 45.833 0.00 0.00 0.00 2.69
934 1001 4.035675 GGCTTCCTTCTTATTTCATCACCG 59.964 45.833 0.00 0.00 0.00 4.94
937 1004 5.160607 TCCTTCTTATTTCATCACCGTGT 57.839 39.130 0.00 0.00 0.00 4.49
947 1014 3.914312 TCATCACCGTGTCTTCTTCTTC 58.086 45.455 0.00 0.00 0.00 2.87
949 1016 4.039245 TCATCACCGTGTCTTCTTCTTCTT 59.961 41.667 0.00 0.00 0.00 2.52
950 1017 4.402056 TCACCGTGTCTTCTTCTTCTTT 57.598 40.909 0.00 0.00 0.00 2.52
951 1018 4.766375 TCACCGTGTCTTCTTCTTCTTTT 58.234 39.130 0.00 0.00 0.00 2.27
952 1019 4.570772 TCACCGTGTCTTCTTCTTCTTTTG 59.429 41.667 0.00 0.00 0.00 2.44
959 1034 4.082125 TCTTCTTCTTCTTTTGCCATCCC 58.918 43.478 0.00 0.00 0.00 3.85
996 1071 2.104111 GAGGAGACGAGAGGAGAGATCA 59.896 54.545 0.00 0.00 0.00 2.92
1005 1102 2.172293 AGAGGAGAGATCAACAATGGCC 59.828 50.000 0.00 0.00 0.00 5.36
1062 1159 4.241555 ATCGCCATGGACGCCTCC 62.242 66.667 18.40 0.00 37.04 4.30
1117 1214 1.301244 CCGCCGGATCTCCAATCTG 60.301 63.158 5.05 0.00 35.14 2.90
1124 1224 2.103094 CGGATCTCCAATCTGCTTACCA 59.897 50.000 0.00 0.00 35.14 3.25
1161 1261 3.142174 CCGGCCATCTTAAATCTTCTCC 58.858 50.000 2.24 0.00 0.00 3.71
1163 1263 3.142174 GGCCATCTTAAATCTTCTCCCG 58.858 50.000 0.00 0.00 0.00 5.14
1164 1264 2.550180 GCCATCTTAAATCTTCTCCCGC 59.450 50.000 0.00 0.00 0.00 6.13
1166 1266 3.181450 CCATCTTAAATCTTCTCCCGCCT 60.181 47.826 0.00 0.00 0.00 5.52
1179 1297 2.124942 CGCCTTCTTCCTCCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
1182 1300 1.911471 CCTTCTTCCTCCCTGCCTC 59.089 63.158 0.00 0.00 0.00 4.70
1210 1328 2.748605 AGTCTTGACTGAGAAACTGCG 58.251 47.619 2.11 0.00 0.00 5.18
1213 1331 0.884704 TTGACTGAGAAACTGCGCCC 60.885 55.000 4.18 0.00 0.00 6.13
1214 1332 1.004440 GACTGAGAAACTGCGCCCT 60.004 57.895 4.18 0.00 0.00 5.19
1215 1333 1.294659 GACTGAGAAACTGCGCCCTG 61.295 60.000 4.18 0.00 0.00 4.45
1216 1334 2.669569 TGAGAAACTGCGCCCTGC 60.670 61.111 4.18 0.00 46.70 4.85
1217 1335 3.435186 GAGAAACTGCGCCCTGCC 61.435 66.667 4.18 0.00 45.60 4.85
1220 1338 4.722700 AAACTGCGCCCTGCCGAT 62.723 61.111 4.18 0.00 45.60 4.18
1221 1339 4.722700 AACTGCGCCCTGCCGATT 62.723 61.111 4.18 0.00 45.60 3.34
1222 1340 4.722700 ACTGCGCCCTGCCGATTT 62.723 61.111 4.18 0.00 45.60 2.17
1224 1342 3.401243 CTGCGCCCTGCCGATTTTC 62.401 63.158 4.18 0.00 45.60 2.29
1225 1343 3.134127 GCGCCCTGCCGATTTTCT 61.134 61.111 0.00 0.00 37.76 2.52
1226 1344 2.700773 GCGCCCTGCCGATTTTCTT 61.701 57.895 0.00 0.00 37.76 2.52
1227 1345 1.429423 CGCCCTGCCGATTTTCTTC 59.571 57.895 0.00 0.00 0.00 2.87
1229 1347 1.177401 GCCCTGCCGATTTTCTTCTT 58.823 50.000 0.00 0.00 0.00 2.52
1243 1366 3.936372 TCTTCTTCGAATCCAGACGTT 57.064 42.857 0.00 0.00 0.00 3.99
1263 1390 7.442969 AGACGTTTACATAGGTTGTTGATTGAA 59.557 33.333 0.00 0.00 39.87 2.69
1270 1397 8.458573 ACATAGGTTGTTGATTGAAACTGTAA 57.541 30.769 0.00 0.00 33.74 2.41
1314 1450 0.602905 AGACGTTGAAGCCCTTTCCG 60.603 55.000 0.00 0.00 34.77 4.30
1334 1470 1.131126 GTTGGGTGAGATCGTGCATTG 59.869 52.381 0.00 0.00 0.00 2.82
1336 1472 0.745845 GGGTGAGATCGTGCATTGCT 60.746 55.000 10.49 0.00 0.00 3.91
1357 1493 4.741342 CTGCTCCTTTGGCTTAATCTTTG 58.259 43.478 0.00 0.00 0.00 2.77
1359 1495 4.218417 TGCTCCTTTGGCTTAATCTTTGTC 59.782 41.667 0.00 0.00 0.00 3.18
1360 1496 4.672801 GCTCCTTTGGCTTAATCTTTGTCG 60.673 45.833 0.00 0.00 0.00 4.35
1362 1498 3.191371 CCTTTGGCTTAATCTTTGTCGCT 59.809 43.478 0.00 0.00 0.00 4.93
1425 1563 2.107953 GCAGATCGTGGAGGAGGC 59.892 66.667 0.00 0.00 0.00 4.70
1562 1709 3.618780 GACCAGCTCCAGCACCAGG 62.619 68.421 0.48 0.03 45.16 4.45
1654 1801 2.682494 TTCCCGACCTTCTCCCCG 60.682 66.667 0.00 0.00 0.00 5.73
1655 1802 3.228243 TTCCCGACCTTCTCCCCGA 62.228 63.158 0.00 0.00 0.00 5.14
1657 1804 3.823330 CCGACCTTCTCCCCGACG 61.823 72.222 0.00 0.00 0.00 5.12
1714 1929 2.343758 GTTGAGGACAGGAGCGCA 59.656 61.111 11.47 0.00 0.00 6.09
1942 2157 3.746949 CTCTCGTGCTCCCATGGGC 62.747 68.421 27.41 16.06 34.68 5.36
1968 2184 1.761784 CCATGGTAGCAGCTCTTCTCT 59.238 52.381 2.57 0.00 0.00 3.10
1969 2185 2.224018 CCATGGTAGCAGCTCTTCTCTC 60.224 54.545 2.57 0.00 0.00 3.20
1970 2186 2.523325 TGGTAGCAGCTCTTCTCTCT 57.477 50.000 0.00 0.00 0.00 3.10
1971 2187 2.813907 TGGTAGCAGCTCTTCTCTCTT 58.186 47.619 0.00 0.00 0.00 2.85
1972 2188 3.169099 TGGTAGCAGCTCTTCTCTCTTT 58.831 45.455 0.00 0.00 0.00 2.52
2044 2261 2.639327 GCGGAAAGCAAGGTGCCAT 61.639 57.895 0.00 0.00 46.52 4.40
2114 2339 9.897744 TGAATTGATTGAACATACAGAAGAAAC 57.102 29.630 0.00 0.00 0.00 2.78
2311 2565 5.010112 TGAATAAAAAGGACCACATTTGCGA 59.990 36.000 0.00 0.00 30.40 5.10
2312 2566 5.659440 ATAAAAAGGACCACATTTGCGAT 57.341 34.783 0.00 0.00 30.40 4.58
2610 2898 7.329471 CAGGTTATTACACGGTGATAGATGATG 59.671 40.741 16.29 1.83 0.00 3.07
2664 3318 2.399356 GCTAACCTTGTCGGCCAGC 61.399 63.158 2.24 0.00 36.21 4.85
2753 3411 8.520351 AGGGAAATTATGTAACAAAGTAACTGC 58.480 33.333 0.00 0.00 0.00 4.40
2766 3424 0.107897 TAACTGCGGCACACATAGGG 60.108 55.000 0.00 0.00 0.00 3.53
2790 3448 7.255277 GGGAAATAGGAAATAGCATCACACTTC 60.255 40.741 0.00 0.00 0.00 3.01
2805 3463 7.361201 GCATCACACTTCAGCTAGTAAAATTCA 60.361 37.037 0.00 0.00 0.00 2.57
2818 3476 9.607285 GCTAGTAAAATTCAAGAAAATTCACGA 57.393 29.630 0.00 0.00 0.00 4.35
2856 3518 2.165167 CATCAATGCCACAGAACCACT 58.835 47.619 0.00 0.00 0.00 4.00
2880 3542 3.062323 GCAGCAAGCAATAACAGCTAG 57.938 47.619 0.00 0.00 42.53 3.42
2885 3565 3.012518 CAAGCAATAACAGCTAGGCAGT 58.987 45.455 0.00 0.00 42.53 4.40
2887 3567 3.690460 AGCAATAACAGCTAGGCAGTTT 58.310 40.909 5.71 0.00 41.32 2.66
2892 3572 7.173907 AGCAATAACAGCTAGGCAGTTTATATG 59.826 37.037 5.71 2.95 41.32 1.78
2909 3595 0.756903 ATGCCTATGGGTACGTGTCC 59.243 55.000 0.00 0.00 34.45 4.02
2912 3598 1.140252 GCCTATGGGTACGTGTCCATT 59.860 52.381 23.27 11.89 43.01 3.16
2913 3599 2.366266 GCCTATGGGTACGTGTCCATTA 59.634 50.000 23.27 12.26 43.01 1.90
2948 3644 6.704310 TGGTACTACTGAATGGTTTTAGGTC 58.296 40.000 0.00 0.00 0.00 3.85
2962 3658 7.947282 TGGTTTTAGGTCTTTGAATTAAGTGG 58.053 34.615 0.00 0.00 0.00 4.00
2964 3660 9.070179 GGTTTTAGGTCTTTGAATTAAGTGGTA 57.930 33.333 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.643387 AGTGCAGTTGGGCCCGAC 62.643 66.667 32.45 32.45 0.00 4.79
1 2 4.641645 CAGTGCAGTTGGGCCCGA 62.642 66.667 19.37 14.11 0.00 5.14
4 5 3.982241 GTGCAGTGCAGTTGGGCC 61.982 66.667 20.42 0.14 40.08 5.80
5 6 4.332637 CGTGCAGTGCAGTTGGGC 62.333 66.667 20.42 4.39 40.08 5.36
6 7 1.596752 TACGTGCAGTGCAGTTGGG 60.597 57.895 20.42 8.20 40.08 4.12
7 8 1.569493 GTACGTGCAGTGCAGTTGG 59.431 57.895 20.42 10.78 40.08 3.77
8 9 1.201578 CGTACGTGCAGTGCAGTTG 59.798 57.895 20.42 14.01 40.08 3.16
9 10 2.594962 GCGTACGTGCAGTGCAGTT 61.595 57.895 20.42 10.96 40.08 3.16
10 11 3.036084 GCGTACGTGCAGTGCAGT 61.036 61.111 20.42 19.79 40.08 4.40
11 12 3.035503 TGCGTACGTGCAGTGCAG 61.036 61.111 20.42 14.97 40.08 4.41
17 18 0.026933 CAAACAACTGCGTACGTGCA 59.973 50.000 17.90 6.19 43.95 4.57
18 19 1.259544 GCAAACAACTGCGTACGTGC 61.260 55.000 17.90 12.04 31.50 5.34
19 20 0.026933 TGCAAACAACTGCGTACGTG 59.973 50.000 17.90 12.53 45.74 4.49
20 21 0.027063 GTGCAAACAACTGCGTACGT 59.973 50.000 17.90 0.00 45.74 3.57
21 22 0.984932 CGTGCAAACAACTGCGTACG 60.985 55.000 11.84 11.84 45.74 3.67
22 23 0.656205 CCGTGCAAACAACTGCGTAC 60.656 55.000 0.00 0.00 45.74 3.67
23 24 1.090625 ACCGTGCAAACAACTGCGTA 61.091 50.000 0.00 0.00 45.74 4.42
24 25 2.317685 GACCGTGCAAACAACTGCGT 62.318 55.000 0.00 0.00 45.74 5.24
25 26 1.654137 GACCGTGCAAACAACTGCG 60.654 57.895 0.00 0.00 45.74 5.18
26 27 1.299089 GGACCGTGCAAACAACTGC 60.299 57.895 0.00 0.00 42.95 4.40
27 28 0.453793 TTGGACCGTGCAAACAACTG 59.546 50.000 2.54 0.00 0.00 3.16
28 29 1.066908 CATTGGACCGTGCAAACAACT 59.933 47.619 9.70 0.00 29.75 3.16
29 30 1.066303 TCATTGGACCGTGCAAACAAC 59.934 47.619 9.70 0.00 29.75 3.32
30 31 1.336440 CTCATTGGACCGTGCAAACAA 59.664 47.619 9.70 0.00 29.75 2.83
31 32 0.950836 CTCATTGGACCGTGCAAACA 59.049 50.000 9.70 0.00 29.75 2.83
32 33 1.197721 CTCTCATTGGACCGTGCAAAC 59.802 52.381 9.70 0.00 29.75 2.93
33 34 1.071542 TCTCTCATTGGACCGTGCAAA 59.928 47.619 9.70 0.00 29.75 3.68
34 35 0.684535 TCTCTCATTGGACCGTGCAA 59.315 50.000 8.00 8.00 30.73 4.08
35 36 0.037326 GTCTCTCATTGGACCGTGCA 60.037 55.000 0.00 0.00 0.00 4.57
36 37 1.078759 CGTCTCTCATTGGACCGTGC 61.079 60.000 0.00 0.00 0.00 5.34
37 38 0.243907 ACGTCTCTCATTGGACCGTG 59.756 55.000 0.00 0.00 0.00 4.94
38 39 1.471684 GTACGTCTCTCATTGGACCGT 59.528 52.381 0.00 0.00 0.00 4.83
39 40 1.531264 CGTACGTCTCTCATTGGACCG 60.531 57.143 7.22 0.00 0.00 4.79
40 41 1.798079 GCGTACGTCTCTCATTGGACC 60.798 57.143 17.90 0.00 0.00 4.46
41 42 1.135489 TGCGTACGTCTCTCATTGGAC 60.135 52.381 17.90 0.00 0.00 4.02
42 43 1.135489 GTGCGTACGTCTCTCATTGGA 60.135 52.381 17.90 0.00 0.00 3.53
43 44 1.269166 GTGCGTACGTCTCTCATTGG 58.731 55.000 17.90 0.00 0.00 3.16
44 45 1.914051 CTGTGCGTACGTCTCTCATTG 59.086 52.381 17.90 0.00 0.00 2.82
45 46 1.135373 CCTGTGCGTACGTCTCTCATT 60.135 52.381 17.90 0.00 0.00 2.57
46 47 0.452184 CCTGTGCGTACGTCTCTCAT 59.548 55.000 17.90 0.00 0.00 2.90
47 48 0.604511 TCCTGTGCGTACGTCTCTCA 60.605 55.000 17.90 2.51 0.00 3.27
48 49 0.179194 GTCCTGTGCGTACGTCTCTC 60.179 60.000 17.90 0.00 0.00 3.20
49 50 1.874562 GTCCTGTGCGTACGTCTCT 59.125 57.895 17.90 0.00 0.00 3.10
50 51 1.511464 CGTCCTGTGCGTACGTCTC 60.511 63.158 17.90 10.43 32.16 3.36
51 52 2.559840 CGTCCTGTGCGTACGTCT 59.440 61.111 17.90 0.00 32.16 4.18
52 53 3.170585 GCGTCCTGTGCGTACGTC 61.171 66.667 17.90 9.82 38.81 4.34
77 78 3.039134 GGTTGCACCAAAGTCCCG 58.961 61.111 0.00 0.00 38.42 5.14
98 99 1.352056 CGACTGCTCTGCATGCATG 59.648 57.895 22.97 22.70 38.13 4.06
99 100 2.470362 GCGACTGCTCTGCATGCAT 61.470 57.895 22.97 4.56 38.13 3.96
100 101 3.122971 GCGACTGCTCTGCATGCA 61.123 61.111 21.29 21.29 38.13 3.96
101 102 3.873883 GGCGACTGCTCTGCATGC 61.874 66.667 11.82 11.82 42.25 4.06
102 103 3.561213 CGGCGACTGCTCTGCATG 61.561 66.667 0.00 0.00 42.25 4.06
128 129 4.101790 CATGTCCCCGCAACGCAC 62.102 66.667 0.00 0.00 0.00 5.34
129 130 4.634703 ACATGTCCCCGCAACGCA 62.635 61.111 0.00 0.00 0.00 5.24
130 131 4.101790 CACATGTCCCCGCAACGC 62.102 66.667 0.00 0.00 0.00 4.84
131 132 3.430862 CCACATGTCCCCGCAACG 61.431 66.667 0.00 0.00 0.00 4.10
132 133 3.061848 CCCACATGTCCCCGCAAC 61.062 66.667 0.00 0.00 0.00 4.17
140 141 2.472414 TTACACCGGGCCCACATGTC 62.472 60.000 24.92 0.00 0.00 3.06
141 142 2.530672 TTACACCGGGCCCACATGT 61.531 57.895 24.92 23.39 0.00 3.21
142 143 2.043980 GTTACACCGGGCCCACATG 61.044 63.158 24.92 18.66 0.00 3.21
143 144 2.353573 GTTACACCGGGCCCACAT 59.646 61.111 24.92 6.30 0.00 3.21
144 145 3.169242 TGTTACACCGGGCCCACA 61.169 61.111 24.92 14.92 0.00 4.17
145 146 2.670592 GTGTTACACCGGGCCCAC 60.671 66.667 24.92 12.04 0.00 4.61
146 147 2.472414 GATGTGTTACACCGGGCCCA 62.472 60.000 24.92 0.00 32.73 5.36
147 148 1.747745 GATGTGTTACACCGGGCCC 60.748 63.158 13.57 13.57 32.73 5.80
148 149 1.747745 GGATGTGTTACACCGGGCC 60.748 63.158 13.29 0.00 32.73 5.80
149 150 2.104253 CGGATGTGTTACACCGGGC 61.104 63.158 13.29 0.00 38.33 6.13
150 151 4.195308 CGGATGTGTTACACCGGG 57.805 61.111 13.29 0.00 38.33 5.73
152 153 0.738412 GACCCGGATGTGTTACACCG 60.738 60.000 13.29 9.34 40.17 4.94
153 154 0.738412 CGACCCGGATGTGTTACACC 60.738 60.000 13.29 0.00 32.73 4.16
154 155 1.356527 GCGACCCGGATGTGTTACAC 61.357 60.000 8.76 8.76 34.56 2.90
155 156 1.079681 GCGACCCGGATGTGTTACA 60.080 57.895 0.73 0.00 0.00 2.41
156 157 1.079681 TGCGACCCGGATGTGTTAC 60.080 57.895 0.73 0.00 0.00 2.50
157 158 1.079681 GTGCGACCCGGATGTGTTA 60.080 57.895 0.73 0.00 0.00 2.41
158 159 2.358247 GTGCGACCCGGATGTGTT 60.358 61.111 0.73 0.00 0.00 3.32
159 160 4.388499 GGTGCGACCCGGATGTGT 62.388 66.667 0.73 0.00 30.04 3.72
172 173 4.947147 TGAGGGTGGTTGCGGTGC 62.947 66.667 0.00 0.00 0.00 5.01
173 174 2.978010 GTGAGGGTGGTTGCGGTG 60.978 66.667 0.00 0.00 0.00 4.94
174 175 4.265056 GGTGAGGGTGGTTGCGGT 62.265 66.667 0.00 0.00 0.00 5.68
175 176 3.953775 AGGTGAGGGTGGTTGCGG 61.954 66.667 0.00 0.00 0.00 5.69
176 177 2.669569 CAGGTGAGGGTGGTTGCG 60.670 66.667 0.00 0.00 0.00 4.85
177 178 1.600916 GTCAGGTGAGGGTGGTTGC 60.601 63.158 0.00 0.00 0.00 4.17
178 179 1.301716 CGTCAGGTGAGGGTGGTTG 60.302 63.158 0.00 0.00 0.00 3.77
179 180 2.516888 CCGTCAGGTGAGGGTGGTT 61.517 63.158 10.07 0.00 43.19 3.67
180 181 2.923035 CCGTCAGGTGAGGGTGGT 60.923 66.667 10.07 0.00 43.19 4.16
181 182 3.706373 CCCGTCAGGTGAGGGTGG 61.706 72.222 15.72 0.39 45.84 4.61
182 183 3.706373 CCCCGTCAGGTGAGGGTG 61.706 72.222 15.72 2.77 45.84 4.61
201 202 0.670239 TATATGCATGCACGCCGAGG 60.670 55.000 25.37 0.00 0.00 4.63
202 203 0.439985 GTATATGCATGCACGCCGAG 59.560 55.000 25.37 0.00 0.00 4.63
203 204 1.281566 CGTATATGCATGCACGCCGA 61.282 55.000 25.37 6.53 0.00 5.54
204 205 1.130411 CGTATATGCATGCACGCCG 59.870 57.895 25.37 18.35 0.00 6.46
205 206 0.865111 TTCGTATATGCATGCACGCC 59.135 50.000 25.37 10.35 34.50 5.68
206 207 1.260297 TGTTCGTATATGCATGCACGC 59.740 47.619 25.37 12.17 34.50 5.34
207 208 3.584095 TTGTTCGTATATGCATGCACG 57.416 42.857 25.37 21.66 35.78 5.34
261 262 6.455380 CGACTTCGGTTGTACTGTGTTAAAAA 60.455 38.462 0.00 0.00 35.37 1.94
262 263 5.005586 CGACTTCGGTTGTACTGTGTTAAAA 59.994 40.000 0.00 0.00 35.37 1.52
263 264 4.503734 CGACTTCGGTTGTACTGTGTTAAA 59.496 41.667 0.00 0.00 35.37 1.52
264 265 4.043750 CGACTTCGGTTGTACTGTGTTAA 58.956 43.478 0.00 0.00 35.37 2.01
265 266 3.631144 CGACTTCGGTTGTACTGTGTTA 58.369 45.455 0.00 0.00 35.37 2.41
266 267 2.466846 CGACTTCGGTTGTACTGTGTT 58.533 47.619 0.00 0.00 35.37 3.32
267 268 1.866880 GCGACTTCGGTTGTACTGTGT 60.867 52.381 0.02 0.00 40.23 3.72
268 269 0.782384 GCGACTTCGGTTGTACTGTG 59.218 55.000 0.02 0.00 40.23 3.66
269 270 3.190337 GCGACTTCGGTTGTACTGT 57.810 52.632 0.02 0.00 40.23 3.55
278 279 1.550065 CTATGTGTGAGCGACTTCGG 58.450 55.000 0.02 0.00 40.23 4.30
279 280 1.132453 TCCTATGTGTGAGCGACTTCG 59.868 52.381 0.00 0.00 43.27 3.79
280 281 2.803451 CTCCTATGTGTGAGCGACTTC 58.197 52.381 0.00 0.00 0.00 3.01
281 282 1.134965 GCTCCTATGTGTGAGCGACTT 60.135 52.381 0.00 0.00 43.94 3.01
282 283 0.457851 GCTCCTATGTGTGAGCGACT 59.542 55.000 0.00 0.00 43.94 4.18
283 284 2.964911 GCTCCTATGTGTGAGCGAC 58.035 57.895 0.00 0.00 43.94 5.19
287 288 4.098501 TGTGAGTATGCTCCTATGTGTGAG 59.901 45.833 8.45 0.00 40.95 3.51
288 289 4.023291 TGTGAGTATGCTCCTATGTGTGA 58.977 43.478 8.45 0.00 40.95 3.58
289 290 4.115516 GTGTGAGTATGCTCCTATGTGTG 58.884 47.826 8.45 0.00 40.95 3.82
290 291 4.026744 AGTGTGAGTATGCTCCTATGTGT 58.973 43.478 8.45 0.00 40.95 3.72
291 292 4.142071 ACAGTGTGAGTATGCTCCTATGTG 60.142 45.833 8.45 2.63 40.95 3.21
292 293 4.026744 ACAGTGTGAGTATGCTCCTATGT 58.973 43.478 8.45 5.47 40.95 2.29
293 294 4.662468 ACAGTGTGAGTATGCTCCTATG 57.338 45.455 8.45 4.88 40.95 2.23
294 295 4.100189 GGAACAGTGTGAGTATGCTCCTAT 59.900 45.833 8.45 0.00 40.95 2.57
295 296 3.447586 GGAACAGTGTGAGTATGCTCCTA 59.552 47.826 8.45 0.00 40.95 2.94
296 297 2.234908 GGAACAGTGTGAGTATGCTCCT 59.765 50.000 8.45 0.00 40.95 3.69
297 298 2.234908 AGGAACAGTGTGAGTATGCTCC 59.765 50.000 8.45 0.00 40.95 4.70
298 299 3.601443 AGGAACAGTGTGAGTATGCTC 57.399 47.619 3.51 3.51 41.97 4.26
299 300 4.357918 AAAGGAACAGTGTGAGTATGCT 57.642 40.909 0.00 0.00 0.00 3.79
300 301 5.438761 AAAAAGGAACAGTGTGAGTATGC 57.561 39.130 0.00 0.00 0.00 3.14
325 326 9.920946 AACCCTATAAGAAATGTACACATGATT 57.079 29.630 0.00 0.00 36.56 2.57
326 327 9.920946 AAACCCTATAAGAAATGTACACATGAT 57.079 29.630 0.00 0.00 36.56 2.45
337 338 9.780186 GCAGATGTACTAAACCCTATAAGAAAT 57.220 33.333 0.00 0.00 0.00 2.17
338 339 8.764558 TGCAGATGTACTAAACCCTATAAGAAA 58.235 33.333 0.00 0.00 0.00 2.52
339 340 8.313944 TGCAGATGTACTAAACCCTATAAGAA 57.686 34.615 0.00 0.00 0.00 2.52
340 341 7.907841 TGCAGATGTACTAAACCCTATAAGA 57.092 36.000 0.00 0.00 0.00 2.10
342 343 9.991906 GTATTGCAGATGTACTAAACCCTATAA 57.008 33.333 0.00 0.00 0.00 0.98
343 344 9.375974 AGTATTGCAGATGTACTAAACCCTATA 57.624 33.333 0.00 0.00 0.00 1.31
344 345 8.150945 CAGTATTGCAGATGTACTAAACCCTAT 58.849 37.037 0.00 0.00 0.00 2.57
345 346 7.125204 ACAGTATTGCAGATGTACTAAACCCTA 59.875 37.037 0.00 0.00 0.00 3.53
346 347 6.070194 ACAGTATTGCAGATGTACTAAACCCT 60.070 38.462 0.00 0.00 0.00 4.34
347 348 6.113411 ACAGTATTGCAGATGTACTAAACCC 58.887 40.000 0.00 0.00 0.00 4.11
348 349 6.258068 GGACAGTATTGCAGATGTACTAAACC 59.742 42.308 0.00 0.00 0.00 3.27
349 350 7.042335 AGGACAGTATTGCAGATGTACTAAAC 58.958 38.462 5.81 0.47 35.05 2.01
350 351 7.182817 AGGACAGTATTGCAGATGTACTAAA 57.817 36.000 5.81 0.00 35.05 1.85
351 352 6.791867 AGGACAGTATTGCAGATGTACTAA 57.208 37.500 5.81 0.00 35.05 2.24
352 353 6.573434 CAAGGACAGTATTGCAGATGTACTA 58.427 40.000 7.56 0.00 35.78 1.82
353 354 5.423015 CAAGGACAGTATTGCAGATGTACT 58.577 41.667 0.00 2.55 38.50 2.73
354 355 5.725110 CAAGGACAGTATTGCAGATGTAC 57.275 43.478 0.00 0.00 0.00 2.90
363 364 4.576463 GTCTTATGGGCAAGGACAGTATTG 59.424 45.833 0.00 0.00 0.00 1.90
364 365 4.227300 TGTCTTATGGGCAAGGACAGTATT 59.773 41.667 0.00 0.00 0.00 1.89
365 366 3.780294 TGTCTTATGGGCAAGGACAGTAT 59.220 43.478 0.00 0.00 0.00 2.12
366 367 3.178046 TGTCTTATGGGCAAGGACAGTA 58.822 45.455 0.00 0.00 0.00 2.74
367 368 1.985159 TGTCTTATGGGCAAGGACAGT 59.015 47.619 0.00 0.00 0.00 3.55
368 369 2.787473 TGTCTTATGGGCAAGGACAG 57.213 50.000 0.00 0.00 0.00 3.51
369 370 2.308570 ACATGTCTTATGGGCAAGGACA 59.691 45.455 0.00 0.00 0.00 4.02
370 371 3.004752 ACATGTCTTATGGGCAAGGAC 57.995 47.619 0.00 0.00 0.00 3.85
371 372 3.431626 CGTACATGTCTTATGGGCAAGGA 60.432 47.826 0.00 0.00 0.00 3.36
372 373 2.872245 CGTACATGTCTTATGGGCAAGG 59.128 50.000 0.00 0.00 0.00 3.61
373 374 3.531538 ACGTACATGTCTTATGGGCAAG 58.468 45.455 0.00 0.00 0.00 4.01
374 375 3.620427 ACGTACATGTCTTATGGGCAA 57.380 42.857 0.00 0.00 0.00 4.52
375 376 4.739587 TTACGTACATGTCTTATGGGCA 57.260 40.909 0.00 0.00 0.00 5.36
376 377 5.352016 TGTTTTACGTACATGTCTTATGGGC 59.648 40.000 0.00 0.00 0.00 5.36
377 378 6.369340 TGTGTTTTACGTACATGTCTTATGGG 59.631 38.462 0.00 0.00 0.00 4.00
378 379 7.117236 ACTGTGTTTTACGTACATGTCTTATGG 59.883 37.037 0.00 0.00 0.00 2.74
379 380 8.014322 ACTGTGTTTTACGTACATGTCTTATG 57.986 34.615 0.00 0.00 0.00 1.90
380 381 8.086522 AGACTGTGTTTTACGTACATGTCTTAT 58.913 33.333 0.00 0.00 38.14 1.73
381 382 7.428020 AGACTGTGTTTTACGTACATGTCTTA 58.572 34.615 0.00 0.00 38.14 2.10
382 383 6.278363 AGACTGTGTTTTACGTACATGTCTT 58.722 36.000 0.00 0.00 38.14 3.01
383 384 5.839621 AGACTGTGTTTTACGTACATGTCT 58.160 37.500 0.00 16.12 37.36 3.41
384 385 6.860023 AGTAGACTGTGTTTTACGTACATGTC 59.140 38.462 0.00 13.46 34.77 3.06
385 386 6.742109 AGTAGACTGTGTTTTACGTACATGT 58.258 36.000 2.69 2.69 0.00 3.21
386 387 8.906636 ATAGTAGACTGTGTTTTACGTACATG 57.093 34.615 0.00 0.00 0.00 3.21
414 415 9.369904 GCAGGCAAAATTAAGATGAAAGAATTA 57.630 29.630 0.00 0.00 0.00 1.40
415 416 8.098912 AGCAGGCAAAATTAAGATGAAAGAATT 58.901 29.630 0.00 0.00 0.00 2.17
416 417 7.548075 CAGCAGGCAAAATTAAGATGAAAGAAT 59.452 33.333 0.00 0.00 0.00 2.40
417 418 6.869913 CAGCAGGCAAAATTAAGATGAAAGAA 59.130 34.615 0.00 0.00 0.00 2.52
418 419 6.392354 CAGCAGGCAAAATTAAGATGAAAGA 58.608 36.000 0.00 0.00 0.00 2.52
419 420 5.579511 CCAGCAGGCAAAATTAAGATGAAAG 59.420 40.000 0.00 0.00 0.00 2.62
420 421 5.011943 ACCAGCAGGCAAAATTAAGATGAAA 59.988 36.000 0.00 0.00 39.06 2.69
421 422 4.527816 ACCAGCAGGCAAAATTAAGATGAA 59.472 37.500 0.00 0.00 39.06 2.57
422 423 4.088634 ACCAGCAGGCAAAATTAAGATGA 58.911 39.130 0.00 0.00 39.06 2.92
423 424 4.460948 ACCAGCAGGCAAAATTAAGATG 57.539 40.909 0.00 0.00 39.06 2.90
424 425 6.796785 AATACCAGCAGGCAAAATTAAGAT 57.203 33.333 0.00 0.00 39.06 2.40
425 426 6.603940 AAATACCAGCAGGCAAAATTAAGA 57.396 33.333 0.00 0.00 39.06 2.10
426 427 7.671495 AAAAATACCAGCAGGCAAAATTAAG 57.329 32.000 0.00 0.00 39.06 1.85
427 428 8.150945 TGTAAAAATACCAGCAGGCAAAATTAA 58.849 29.630 0.00 0.00 39.06 1.40
428 429 7.671302 TGTAAAAATACCAGCAGGCAAAATTA 58.329 30.769 0.00 0.00 39.06 1.40
429 430 6.529220 TGTAAAAATACCAGCAGGCAAAATT 58.471 32.000 0.00 0.00 39.06 1.82
430 431 6.107901 TGTAAAAATACCAGCAGGCAAAAT 57.892 33.333 0.00 0.00 39.06 1.82
431 432 5.537300 TGTAAAAATACCAGCAGGCAAAA 57.463 34.783 0.00 0.00 39.06 2.44
432 433 5.537300 TTGTAAAAATACCAGCAGGCAAA 57.463 34.783 0.00 0.00 39.06 3.68
433 434 5.736951 ATTGTAAAAATACCAGCAGGCAA 57.263 34.783 0.00 0.00 39.06 4.52
434 435 5.949354 AGTATTGTAAAAATACCAGCAGGCA 59.051 36.000 0.00 0.00 39.06 4.75
435 436 6.451064 AGTATTGTAAAAATACCAGCAGGC 57.549 37.500 0.00 0.00 39.06 4.85
453 454 9.686683 AATAGTTTCATTAGCTCCACAAGTATT 57.313 29.630 0.00 0.00 0.00 1.89
454 455 9.686683 AAATAGTTTCATTAGCTCCACAAGTAT 57.313 29.630 0.00 0.00 0.00 2.12
455 456 9.515226 AAAATAGTTTCATTAGCTCCACAAGTA 57.485 29.630 0.00 0.00 0.00 2.24
456 457 8.299570 CAAAATAGTTTCATTAGCTCCACAAGT 58.700 33.333 0.00 0.00 0.00 3.16
457 458 7.756722 CCAAAATAGTTTCATTAGCTCCACAAG 59.243 37.037 0.00 0.00 0.00 3.16
458 459 7.232534 ACCAAAATAGTTTCATTAGCTCCACAA 59.767 33.333 0.00 0.00 0.00 3.33
459 460 6.719370 ACCAAAATAGTTTCATTAGCTCCACA 59.281 34.615 0.00 0.00 0.00 4.17
460 461 7.158099 ACCAAAATAGTTTCATTAGCTCCAC 57.842 36.000 0.00 0.00 0.00 4.02
461 462 8.871629 TTACCAAAATAGTTTCATTAGCTCCA 57.128 30.769 0.00 0.00 0.00 3.86
473 474 9.139174 CGAGCATTGAATTTTACCAAAATAGTT 57.861 29.630 0.00 0.00 40.05 2.24
474 475 8.519526 TCGAGCATTGAATTTTACCAAAATAGT 58.480 29.630 0.00 0.00 40.05 2.12
475 476 8.909708 TCGAGCATTGAATTTTACCAAAATAG 57.090 30.769 0.00 0.00 40.05 1.73
476 477 9.698309 TTTCGAGCATTGAATTTTACCAAAATA 57.302 25.926 0.00 0.00 38.53 1.40
477 478 8.600449 TTTCGAGCATTGAATTTTACCAAAAT 57.400 26.923 0.00 0.00 38.53 1.82
478 479 8.494347 CATTTCGAGCATTGAATTTTACCAAAA 58.506 29.630 0.00 0.00 38.53 2.44
479 480 7.117523 CCATTTCGAGCATTGAATTTTACCAAA 59.882 33.333 0.00 0.00 38.53 3.28
480 481 6.589523 CCATTTCGAGCATTGAATTTTACCAA 59.410 34.615 0.00 0.00 38.53 3.67
481 482 6.071672 TCCATTTCGAGCATTGAATTTTACCA 60.072 34.615 0.00 0.00 38.53 3.25
482 483 6.329496 TCCATTTCGAGCATTGAATTTTACC 58.671 36.000 0.00 0.00 38.53 2.85
483 484 6.473455 CCTCCATTTCGAGCATTGAATTTTAC 59.527 38.462 0.00 0.00 38.53 2.01
484 485 6.376864 TCCTCCATTTCGAGCATTGAATTTTA 59.623 34.615 0.00 0.00 38.53 1.52
485 486 5.185635 TCCTCCATTTCGAGCATTGAATTTT 59.814 36.000 0.00 0.00 38.53 1.82
486 487 4.706476 TCCTCCATTTCGAGCATTGAATTT 59.294 37.500 0.00 0.00 38.53 1.82
487 488 4.272489 TCCTCCATTTCGAGCATTGAATT 58.728 39.130 0.00 0.00 38.53 2.17
488 489 3.889815 TCCTCCATTTCGAGCATTGAAT 58.110 40.909 0.00 0.00 38.53 2.57
489 490 3.348647 TCCTCCATTTCGAGCATTGAA 57.651 42.857 0.00 0.00 36.51 2.69
490 491 3.348647 TTCCTCCATTTCGAGCATTGA 57.651 42.857 0.00 0.00 0.00 2.57
491 492 4.096833 TCATTTCCTCCATTTCGAGCATTG 59.903 41.667 0.00 0.00 0.00 2.82
492 493 4.272489 TCATTTCCTCCATTTCGAGCATT 58.728 39.130 0.00 0.00 0.00 3.56
493 494 3.889815 TCATTTCCTCCATTTCGAGCAT 58.110 40.909 0.00 0.00 0.00 3.79
494 495 3.348647 TCATTTCCTCCATTTCGAGCA 57.651 42.857 0.00 0.00 0.00 4.26
495 496 3.065925 CCTTCATTTCCTCCATTTCGAGC 59.934 47.826 0.00 0.00 0.00 5.03
496 497 3.629398 CCCTTCATTTCCTCCATTTCGAG 59.371 47.826 0.00 0.00 0.00 4.04
497 498 3.620488 CCCTTCATTTCCTCCATTTCGA 58.380 45.455 0.00 0.00 0.00 3.71
498 499 2.689983 CCCCTTCATTTCCTCCATTTCG 59.310 50.000 0.00 0.00 0.00 3.46
499 500 2.432146 GCCCCTTCATTTCCTCCATTTC 59.568 50.000 0.00 0.00 0.00 2.17
507 508 1.032114 CGTCTGGCCCCTTCATTTCC 61.032 60.000 0.00 0.00 0.00 3.13
508 509 1.032114 CCGTCTGGCCCCTTCATTTC 61.032 60.000 0.00 0.00 0.00 2.17
522 523 2.905880 CGAGGTATCGGCCCGTCT 60.906 66.667 1.63 0.00 45.39 4.18
589 590 4.166246 ACTCTTTCCGTCTTCCCTTTTT 57.834 40.909 0.00 0.00 0.00 1.94
634 635 5.459831 GGGATCCTTCCTAGTCCTATGAAGA 60.460 48.000 12.58 7.14 42.20 2.87
639 640 2.043252 CGGGGATCCTTCCTAGTCCTAT 59.957 54.545 12.58 0.00 42.20 2.57
640 641 1.428139 CGGGGATCCTTCCTAGTCCTA 59.572 57.143 12.58 0.00 42.20 2.94
641 642 0.188834 CGGGGATCCTTCCTAGTCCT 59.811 60.000 12.58 0.00 42.20 3.85
642 643 0.832559 CCGGGGATCCTTCCTAGTCC 60.833 65.000 12.58 0.12 42.20 3.85
643 644 1.473497 GCCGGGGATCCTTCCTAGTC 61.473 65.000 12.58 0.00 42.20 2.59
644 645 1.459730 GCCGGGGATCCTTCCTAGT 60.460 63.158 12.58 0.00 42.20 2.57
645 646 2.217745 GGCCGGGGATCCTTCCTAG 61.218 68.421 12.58 0.95 42.20 3.02
646 647 2.122547 GGCCGGGGATCCTTCCTA 60.123 66.667 12.58 0.00 42.20 2.94
647 648 4.431524 TGGCCGGGGATCCTTCCT 62.432 66.667 12.58 0.00 42.20 3.36
648 649 3.878667 CTGGCCGGGGATCCTTCC 61.879 72.222 12.58 4.15 41.77 3.46
649 650 3.878667 CCTGGCCGGGGATCCTTC 61.879 72.222 24.51 3.62 0.00 3.46
660 661 3.455469 GATGCTGGTTGCCTGGCC 61.455 66.667 17.53 0.00 42.00 5.36
666 667 4.023365 GGATTATGAGAAGATGCTGGTTGC 60.023 45.833 0.00 0.00 43.25 4.17
727 738 8.559536 ACGAAATCGCATGATGAAAGTTATTAT 58.440 29.630 0.00 0.00 44.43 1.28
740 751 3.063485 TGAGAAACACGAAATCGCATGA 58.937 40.909 0.00 0.00 44.43 3.07
746 757 4.083324 TGCTTGGATGAGAAACACGAAATC 60.083 41.667 0.00 0.00 0.00 2.17
767 799 2.498167 CCTGCCTATTATCACCTGTGC 58.502 52.381 0.00 0.00 0.00 4.57
834 866 2.895372 CCCTTCCATACACGGCGC 60.895 66.667 6.90 0.00 0.00 6.53
875 928 5.696030 AGATTTTTGTATAGGAAGGGAGGC 58.304 41.667 0.00 0.00 0.00 4.70
889 942 3.197983 CGTAGGGAGAGGGAGATTTTTGT 59.802 47.826 0.00 0.00 0.00 2.83
926 991 3.574396 AGAAGAAGAAGACACGGTGATGA 59.426 43.478 16.29 0.00 0.00 2.92
928 993 4.608948 AAGAAGAAGAAGACACGGTGAT 57.391 40.909 16.29 0.00 0.00 3.06
934 1001 4.900635 TGGCAAAAGAAGAAGAAGACAC 57.099 40.909 0.00 0.00 0.00 3.67
937 1004 4.082125 GGGATGGCAAAAGAAGAAGAAGA 58.918 43.478 0.00 0.00 0.00 2.87
947 1014 1.570803 TGGGATTGGGATGGCAAAAG 58.429 50.000 0.00 0.00 0.00 2.27
949 1016 1.907936 CTTTGGGATTGGGATGGCAAA 59.092 47.619 0.00 0.00 0.00 3.68
950 1017 1.570803 CTTTGGGATTGGGATGGCAA 58.429 50.000 0.00 0.00 0.00 4.52
951 1018 0.325484 CCTTTGGGATTGGGATGGCA 60.325 55.000 0.00 0.00 33.58 4.92
952 1019 0.032217 TCCTTTGGGATTGGGATGGC 60.032 55.000 0.00 0.00 36.57 4.40
996 1071 1.203162 TCTTGGTCCATGGCCATTGTT 60.203 47.619 23.25 0.00 35.71 2.83
1005 1102 2.110967 CGGCAGCTCTTGGTCCATG 61.111 63.158 0.00 0.00 0.00 3.66
1117 1214 2.861147 ACCTCTTGGTCTTGGTAAGC 57.139 50.000 0.00 0.00 44.78 3.09
1161 1261 2.586792 CAGGGAGGAAGAAGGCGG 59.413 66.667 0.00 0.00 0.00 6.13
1163 1263 2.264120 GAGGCAGGGAGGAAGAAGGC 62.264 65.000 0.00 0.00 0.00 4.35
1164 1264 0.620121 AGAGGCAGGGAGGAAGAAGG 60.620 60.000 0.00 0.00 0.00 3.46
1166 1266 0.415429 AGAGAGGCAGGGAGGAAGAA 59.585 55.000 0.00 0.00 0.00 2.52
1179 1297 4.078537 TCAGTCAAGACTTGAGAGAGAGG 58.921 47.826 18.24 3.78 41.01 3.69
1182 1300 5.703978 TTCTCAGTCAAGACTTGAGAGAG 57.296 43.478 26.37 26.37 40.13 3.20
1210 1328 1.133216 GAAGAAGAAAATCGGCAGGGC 59.867 52.381 0.00 0.00 0.00 5.19
1213 1331 4.494855 GGATTCGAAGAAGAAAATCGGCAG 60.495 45.833 3.35 0.00 45.90 4.85
1214 1332 3.374058 GGATTCGAAGAAGAAAATCGGCA 59.626 43.478 3.35 0.00 45.90 5.69
1215 1333 3.374058 TGGATTCGAAGAAGAAAATCGGC 59.626 43.478 3.35 0.00 45.90 5.54
1216 1334 4.870426 TCTGGATTCGAAGAAGAAAATCGG 59.130 41.667 3.35 0.00 45.90 4.18
1217 1335 5.499334 CGTCTGGATTCGAAGAAGAAAATCG 60.499 44.000 3.35 3.06 45.90 3.34
1218 1336 5.348997 ACGTCTGGATTCGAAGAAGAAAATC 59.651 40.000 3.35 0.00 45.90 2.17
1219 1337 5.238583 ACGTCTGGATTCGAAGAAGAAAAT 58.761 37.500 3.35 0.00 45.90 1.82
1220 1338 4.628074 ACGTCTGGATTCGAAGAAGAAAA 58.372 39.130 3.35 0.00 45.90 2.29
1221 1339 4.252971 ACGTCTGGATTCGAAGAAGAAA 57.747 40.909 3.35 0.00 45.90 2.52
1222 1340 3.936372 ACGTCTGGATTCGAAGAAGAA 57.064 42.857 3.35 0.00 45.90 2.52
1224 1342 4.921515 TGTAAACGTCTGGATTCGAAGAAG 59.078 41.667 3.35 0.00 45.90 2.85
1225 1343 4.873817 TGTAAACGTCTGGATTCGAAGAA 58.126 39.130 3.35 0.00 45.90 2.52
1226 1344 4.508461 TGTAAACGTCTGGATTCGAAGA 57.492 40.909 3.35 0.00 0.00 2.87
1227 1345 5.459107 CCTATGTAAACGTCTGGATTCGAAG 59.541 44.000 3.35 0.00 0.00 3.79
1229 1347 4.400251 ACCTATGTAAACGTCTGGATTCGA 59.600 41.667 0.00 0.00 0.00 3.71
1243 1366 8.458573 ACAGTTTCAATCAACAACCTATGTAA 57.541 30.769 0.00 0.00 42.99 2.41
1263 1390 7.955185 AGATCTATGGAGGATCTCATTACAGTT 59.045 37.037 0.00 0.00 44.33 3.16
1270 1397 5.422970 GCTCAAGATCTATGGAGGATCTCAT 59.577 44.000 16.34 0.00 46.12 2.90
1314 1450 1.131126 CAATGCACGATCTCACCCAAC 59.869 52.381 0.00 0.00 0.00 3.77
1334 1470 2.373224 AGATTAAGCCAAAGGAGCAGC 58.627 47.619 0.00 0.00 0.00 5.25
1336 1472 4.151883 ACAAAGATTAAGCCAAAGGAGCA 58.848 39.130 0.00 0.00 0.00 4.26
1345 1481 2.159517 CCACAGCGACAAAGATTAAGCC 60.160 50.000 0.00 0.00 0.00 4.35
1362 1498 4.639906 TCTGCATGCCACGCCACA 62.640 61.111 16.68 0.00 0.00 4.17
1401 1539 1.773054 CTCCACGATCTGCTGCATGC 61.773 60.000 11.82 11.82 43.25 4.06
1405 1543 1.227205 CTCCTCCACGATCTGCTGC 60.227 63.158 0.00 0.00 0.00 5.25
1406 1544 1.440893 CCTCCTCCACGATCTGCTG 59.559 63.158 0.00 0.00 0.00 4.41
1407 1545 2.430610 GCCTCCTCCACGATCTGCT 61.431 63.158 0.00 0.00 0.00 4.24
1450 1588 3.768922 GTCGCCTCCAGCTCTGCT 61.769 66.667 0.00 0.00 40.77 4.24
1453 1591 2.604686 TTGGTCGCCTCCAGCTCT 60.605 61.111 0.00 0.00 40.39 4.09
1466 1604 4.021925 GCGCACCTCCTCCTTGGT 62.022 66.667 0.30 0.00 36.96 3.67
1612 1759 2.814341 CCTGAGTCGCTGCTGCTG 60.814 66.667 14.03 0.77 36.97 4.41
1637 1784 2.682494 CGGGGAGAAGGTCGGGAA 60.682 66.667 0.00 0.00 0.00 3.97
1702 1849 3.537206 AACTGGTGCGCTCCTGTCC 62.537 63.158 32.21 15.51 38.40 4.02
1703 1850 2.031163 AACTGGTGCGCTCCTGTC 59.969 61.111 32.21 8.69 38.40 3.51
1704 1851 2.281070 CAACTGGTGCGCTCCTGT 60.281 61.111 28.56 28.56 40.47 4.00
1714 1929 0.179171 CGTCGTCGATAGCAACTGGT 60.179 55.000 0.00 0.00 39.71 4.00
1882 2097 4.864334 CTGGGGATCGGCTGCACC 62.864 72.222 0.50 0.00 0.00 5.01
1942 2157 2.194056 CTGCTACCATGGCCCCAG 59.806 66.667 13.04 11.50 0.00 4.45
1972 2188 8.963725 TCCTAGTATCGTTGATGAGTAGAAAAA 58.036 33.333 0.00 0.00 0.00 1.94
2166 2405 2.422746 ACCTCCTAATTCCCCATGGAG 58.577 52.381 15.22 0.00 43.07 3.86
2266 2519 5.237048 TCATGATGATCGTTGTTCAAGACA 58.763 37.500 0.00 0.00 36.19 3.41
2311 2565 9.601217 GTATGAGGTTTGTCTCTGTAACATTAT 57.399 33.333 0.00 0.00 34.98 1.28
2312 2566 8.590204 TGTATGAGGTTTGTCTCTGTAACATTA 58.410 33.333 0.00 0.00 34.98 1.90
2610 2898 6.058183 ACAGTTCAGCAATACTATCAATCCC 58.942 40.000 0.00 0.00 0.00 3.85
2664 3318 0.108186 TGTATGCAGCCTTCAGTCCG 60.108 55.000 0.00 0.00 0.00 4.79
2753 3411 2.104111 TCCTATTTCCCTATGTGTGCCG 59.896 50.000 0.00 0.00 0.00 5.69
2766 3424 8.213518 TGAAGTGTGATGCTATTTCCTATTTC 57.786 34.615 0.00 0.00 0.00 2.17
2805 3463 6.872547 GGAGTACCTTAGTCGTGAATTTTCTT 59.127 38.462 0.00 0.00 0.00 2.52
2812 3470 4.225942 TCCTAGGAGTACCTTAGTCGTGAA 59.774 45.833 7.62 0.00 45.36 3.18
2813 3471 3.776969 TCCTAGGAGTACCTTAGTCGTGA 59.223 47.826 7.62 0.00 45.36 4.35
2814 3472 3.876320 GTCCTAGGAGTACCTTAGTCGTG 59.124 52.174 13.15 0.00 45.36 4.35
2818 3476 5.728937 TGATGTCCTAGGAGTACCTTAGT 57.271 43.478 13.15 0.00 45.36 2.24
2820 3478 5.304614 GCATTGATGTCCTAGGAGTACCTTA 59.695 44.000 13.15 0.00 45.36 2.69
2821 3479 4.101741 GCATTGATGTCCTAGGAGTACCTT 59.898 45.833 13.15 0.00 45.36 3.50
2885 3565 5.279607 GGACACGTACCCATAGGCATATAAA 60.280 44.000 0.00 0.00 36.11 1.40
2887 3567 3.765511 GGACACGTACCCATAGGCATATA 59.234 47.826 0.00 0.00 36.11 0.86
2892 3572 0.756903 ATGGACACGTACCCATAGGC 59.243 55.000 16.52 0.00 41.09 3.93
2909 3595 6.648310 CAGTAGTACCATCCATTCTGCTAATG 59.352 42.308 0.00 5.63 0.00 1.90
2912 3598 5.454966 TCAGTAGTACCATCCATTCTGCTA 58.545 41.667 0.00 0.00 0.00 3.49
2913 3599 4.290093 TCAGTAGTACCATCCATTCTGCT 58.710 43.478 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.