Multiple sequence alignment - TraesCS3B01G550300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G550300 chr3B 100.000 3425 0 0 1 3425 785291953 785288529 0.000000e+00 6325.0
1 TraesCS3B01G550300 chr3D 87.505 2641 184 68 2 2576 587753280 587750720 0.000000e+00 2915.0
2 TraesCS3B01G550300 chr3D 86.560 439 34 12 2648 3077 587750709 587750287 8.660000e-126 460.0
3 TraesCS3B01G550300 chr3D 92.523 107 8 0 3076 3182 587750211 587750105 1.650000e-33 154.0
4 TraesCS3B01G550300 chr3A 88.912 1894 126 37 458 2300 717306032 717304172 0.000000e+00 2257.0
5 TraesCS3B01G550300 chr3A 90.981 377 23 5 2702 3077 717303887 717303521 6.600000e-137 497.0
6 TraesCS3B01G550300 chr3A 95.876 97 4 0 2269 2365 717304176 717304080 1.270000e-34 158.0
7 TraesCS3B01G550300 chr3A 88.372 129 8 1 3181 3302 717303155 717303027 7.660000e-32 148.0
8 TraesCS3B01G550300 chr3A 94.624 93 5 0 3090 3182 717303451 717303359 9.910000e-31 145.0
9 TraesCS3B01G550300 chr3A 93.506 77 5 0 3348 3424 717303027 717302951 7.770000e-22 115.0
10 TraesCS3B01G550300 chr3A 88.542 96 8 2 2484 2576 717304027 717303932 2.790000e-21 113.0
11 TraesCS3B01G550300 chr5D 94.000 50 2 1 2600 2649 481981007 481981055 1.320000e-09 75.0
12 TraesCS3B01G550300 chr7D 89.655 58 4 2 2600 2657 23074582 23074527 4.740000e-09 73.1
13 TraesCS3B01G550300 chr7A 89.655 58 4 2 2600 2657 92084782 92084727 4.740000e-09 73.1
14 TraesCS3B01G550300 chr2A 89.655 58 4 2 2600 2657 651990462 651990517 4.740000e-09 73.1
15 TraesCS3B01G550300 chr1D 89.655 58 4 2 2600 2657 80654724 80654779 4.740000e-09 73.1
16 TraesCS3B01G550300 chr4A 90.741 54 3 2 2600 2653 707291464 707291515 1.710000e-08 71.3
17 TraesCS3B01G550300 chr7B 90.566 53 1 4 2600 2652 63028010 63028058 2.210000e-07 67.6
18 TraesCS3B01G550300 chr7B 87.931 58 4 3 2604 2659 461239291 461239235 7.930000e-07 65.8
19 TraesCS3B01G550300 chr6B 87.931 58 4 3 2600 2657 7121037 7121091 7.930000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G550300 chr3B 785288529 785291953 3424 True 6325.000000 6325 100.000000 1 3425 1 chr3B.!!$R1 3424
1 TraesCS3B01G550300 chr3D 587750105 587753280 3175 True 1176.333333 2915 88.862667 2 3182 3 chr3D.!!$R1 3180
2 TraesCS3B01G550300 chr3A 717302951 717306032 3081 True 490.428571 2257 91.544714 458 3424 7 chr3A.!!$R1 2966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1010 0.040958 GCAACTGCAAAGACTCCACG 60.041 55.0 0.0 0.0 41.59 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2695 2806 0.109964 GGAGTTTGTAATTGCGCGCA 60.11 50.0 33.09 33.09 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.250464 CAAATTTAGACAGGTGCCTACGA 58.750 43.478 0.00 0.00 0.00 3.43
56 57 5.864418 AATTTAGACAGGTGCCTACGATA 57.136 39.130 0.00 0.00 0.00 2.92
63 64 3.244215 ACAGGTGCCTACGATAATCCATG 60.244 47.826 0.00 0.00 0.00 3.66
85 86 0.607620 TCATCACGACCACAGATGCA 59.392 50.000 0.00 0.00 39.12 3.96
87 88 0.321346 ATCACGACCACAGATGCACA 59.679 50.000 0.00 0.00 0.00 4.57
171 173 3.763057 ACAAGTTTTCTAAGGGCGGAAT 58.237 40.909 0.00 0.00 0.00 3.01
235 237 5.565455 AAAGGGAAATCATTGCTCCAAAA 57.435 34.783 0.00 0.00 0.00 2.44
237 239 6.872585 AAGGGAAATCATTGCTCCAAAATA 57.127 33.333 0.00 0.00 0.00 1.40
238 240 6.872585 AGGGAAATCATTGCTCCAAAATAA 57.127 33.333 0.00 0.00 0.00 1.40
240 242 7.688343 AGGGAAATCATTGCTCCAAAATAAAA 58.312 30.769 0.00 0.00 0.00 1.52
258 260 9.913310 AAAATAAAATTTTCTGAACCTTTCCCA 57.087 25.926 6.72 0.00 0.00 4.37
264 266 4.729227 TTCTGAACCTTTCCCAAAACAC 57.271 40.909 0.00 0.00 0.00 3.32
265 267 3.702792 TCTGAACCTTTCCCAAAACACA 58.297 40.909 0.00 0.00 0.00 3.72
273 275 4.273235 CCTTTCCCAAAACACAGATTTTGC 59.727 41.667 5.62 0.00 44.66 3.68
281 283 6.092533 CCAAAACACAGATTTTGCTTTTGTCT 59.907 34.615 5.62 0.00 44.66 3.41
288 290 6.072783 ACAGATTTTGCTTTTGTCTAGAGCTC 60.073 38.462 5.27 5.27 37.32 4.09
291 293 2.947852 TGCTTTTGTCTAGAGCTCGTC 58.052 47.619 8.37 0.99 37.32 4.20
292 294 2.263945 GCTTTTGTCTAGAGCTCGTCC 58.736 52.381 8.37 0.00 33.72 4.79
299 301 3.963687 TAGAGCTCGTCCGACGCCA 62.964 63.158 16.24 0.00 42.21 5.69
304 306 2.505337 TCGTCCGACGCCAAATCG 60.505 61.111 16.24 0.00 42.21 3.34
359 361 8.665643 TTGTTCATCTTTGATGCAAAAGAAAT 57.334 26.923 15.60 0.50 46.37 2.17
397 399 9.823647 TTTGTTGTTTTGCTATTCCTTTTGATA 57.176 25.926 0.00 0.00 0.00 2.15
409 411 6.901615 TTCCTTTTGATATTACTGGGAGGA 57.098 37.500 0.00 0.00 0.00 3.71
524 526 5.292765 TGTGAACAGAGCTAAGAGAAACAG 58.707 41.667 0.00 0.00 0.00 3.16
534 536 4.507388 GCTAAGAGAAACAGAGCTATGCAG 59.493 45.833 8.60 0.00 0.00 4.41
569 571 0.765510 ACTGTCCCCTTTCCACTGTC 59.234 55.000 0.00 0.00 0.00 3.51
624 628 4.872691 TGCTTACTGCTGAATTTCTCTAGC 59.127 41.667 0.00 0.00 43.37 3.42
679 683 5.763876 AGACAGACCCAGCTATACTTTTT 57.236 39.130 0.00 0.00 0.00 1.94
688 692 8.112016 ACCCAGCTATACTTTTTCTTTTTCTC 57.888 34.615 0.00 0.00 0.00 2.87
689 693 7.176865 ACCCAGCTATACTTTTTCTTTTTCTCC 59.823 37.037 0.00 0.00 0.00 3.71
731 740 2.890311 CCCTGGTGATAAACAAGTGCAA 59.110 45.455 0.00 0.00 0.00 4.08
745 754 4.334481 ACAAGTGCAACAACAACTACTACC 59.666 41.667 0.00 0.00 41.43 3.18
844 871 3.501062 CACATAGTGGACATGGATGATGC 59.499 47.826 0.00 0.00 35.15 3.91
845 872 2.531522 TAGTGGACATGGATGATGCG 57.468 50.000 0.00 0.00 35.15 4.73
846 873 0.816825 AGTGGACATGGATGATGCGC 60.817 55.000 0.00 0.00 35.15 6.09
847 874 1.526686 TGGACATGGATGATGCGCC 60.527 57.895 4.18 0.00 35.15 6.53
848 875 2.610694 GGACATGGATGATGCGCCG 61.611 63.158 4.18 0.00 35.15 6.46
849 876 1.889105 GACATGGATGATGCGCCGT 60.889 57.895 4.18 0.00 35.15 5.68
850 877 1.835483 GACATGGATGATGCGCCGTC 61.835 60.000 4.18 3.57 35.15 4.79
889 916 0.676782 CATTTTTCCTCCCTCGCCGT 60.677 55.000 0.00 0.00 0.00 5.68
921 952 3.273618 ACTCTCTCTCCCCAAAGTCCTAT 59.726 47.826 0.00 0.00 0.00 2.57
922 953 3.895041 CTCTCTCTCCCCAAAGTCCTATC 59.105 52.174 0.00 0.00 0.00 2.08
923 954 3.272285 TCTCTCTCCCCAAAGTCCTATCA 59.728 47.826 0.00 0.00 0.00 2.15
924 955 4.033709 CTCTCTCCCCAAAGTCCTATCAA 58.966 47.826 0.00 0.00 0.00 2.57
925 956 4.635473 TCTCTCCCCAAAGTCCTATCAAT 58.365 43.478 0.00 0.00 0.00 2.57
926 957 4.656112 TCTCTCCCCAAAGTCCTATCAATC 59.344 45.833 0.00 0.00 0.00 2.67
927 958 4.370776 TCTCCCCAAAGTCCTATCAATCA 58.629 43.478 0.00 0.00 0.00 2.57
928 959 4.788075 TCTCCCCAAAGTCCTATCAATCAA 59.212 41.667 0.00 0.00 0.00 2.57
940 972 7.890127 AGTCCTATCAATCAAACAATTCCAAGA 59.110 33.333 0.00 0.00 0.00 3.02
954 986 3.753294 TCCAAGAGTCAGTGAGAAACC 57.247 47.619 0.00 0.00 0.00 3.27
959 991 2.294791 AGAGTCAGTGAGAAACCGTCTG 59.705 50.000 0.00 0.00 36.41 3.51
978 1010 0.040958 GCAACTGCAAAGACTCCACG 60.041 55.000 0.00 0.00 41.59 4.94
979 1011 0.588252 CAACTGCAAAGACTCCACGG 59.412 55.000 0.00 0.00 0.00 4.94
980 1012 1.166531 AACTGCAAAGACTCCACGGC 61.167 55.000 0.00 0.00 0.00 5.68
981 1013 1.597854 CTGCAAAGACTCCACGGCA 60.598 57.895 0.00 0.00 0.00 5.69
982 1014 1.153066 TGCAAAGACTCCACGGCAA 60.153 52.632 0.00 0.00 0.00 4.52
983 1015 1.165907 TGCAAAGACTCCACGGCAAG 61.166 55.000 0.00 0.00 0.00 4.01
984 1016 1.576421 CAAAGACTCCACGGCAAGC 59.424 57.895 0.00 0.00 0.00 4.01
985 1017 1.148273 AAAGACTCCACGGCAAGCA 59.852 52.632 0.00 0.00 0.00 3.91
986 1018 0.465460 AAAGACTCCACGGCAAGCAA 60.465 50.000 0.00 0.00 0.00 3.91
987 1019 0.886490 AAGACTCCACGGCAAGCAAG 60.886 55.000 0.00 0.00 0.00 4.01
988 1020 2.281761 ACTCCACGGCAAGCAAGG 60.282 61.111 0.00 0.00 0.00 3.61
989 1021 2.032528 CTCCACGGCAAGCAAGGA 59.967 61.111 0.00 0.00 0.00 3.36
990 1022 2.032528 TCCACGGCAAGCAAGGAG 59.967 61.111 0.00 0.00 0.00 3.69
991 1023 3.741476 CCACGGCAAGCAAGGAGC 61.741 66.667 0.00 0.00 46.19 4.70
1003 1035 0.459237 CAAGGAGCACGCTACCAGAG 60.459 60.000 0.00 0.00 0.00 3.35
1006 1038 0.461961 GGAGCACGCTACCAGAGATT 59.538 55.000 0.00 0.00 0.00 2.40
1029 1076 1.683917 AGGTCCATGATCGTCTAGTGC 59.316 52.381 0.00 0.00 0.00 4.40
1042 1089 0.030908 CTAGTGCTCGATCGGTTCCC 59.969 60.000 16.41 0.00 0.00 3.97
1044 1091 1.227002 GTGCTCGATCGGTTCCCTC 60.227 63.158 16.41 0.00 0.00 4.30
1046 1093 2.128507 GCTCGATCGGTTCCCTCCT 61.129 63.158 16.41 0.00 0.00 3.69
1069 1118 0.883814 GGAGCAGATCAATGGAGCCG 60.884 60.000 0.00 0.00 0.00 5.52
1072 1121 2.109799 AGATCAATGGAGCCGGCG 59.890 61.111 23.20 5.45 0.00 6.46
1074 1123 2.203070 ATCAATGGAGCCGGCGAC 60.203 61.111 23.20 18.71 0.00 5.19
1086 1135 3.110178 GGCGACGTTCTTCCGGTG 61.110 66.667 0.00 0.00 0.00 4.94
1116 1183 3.633609 ATGGGGAGGACGACGACGA 62.634 63.158 15.32 0.00 42.66 4.20
1121 1188 3.699130 GAGGACGACGACGACGAGC 62.699 68.421 25.15 15.64 42.66 5.03
1126 1193 2.574736 GACGACGACGAGCAGAGC 60.575 66.667 15.32 0.00 42.66 4.09
1127 1194 3.310253 GACGACGACGAGCAGAGCA 62.310 63.158 15.32 0.00 42.66 4.26
1222 1289 3.542742 GTGTACGCGCGCTTCTCC 61.543 66.667 32.58 11.92 0.00 3.71
1492 1559 1.107945 GGGAGTTCTCCCTCTCTTCG 58.892 60.000 25.66 0.00 46.39 3.79
1495 1562 2.438411 GAGTTCTCCCTCTCTTCGACA 58.562 52.381 0.00 0.00 0.00 4.35
1767 1834 1.377725 CACAGGTGGCCATGGAGAC 60.378 63.158 18.40 10.60 0.00 3.36
1770 1837 4.489771 GGTGGCCATGGAGACGGG 62.490 72.222 18.40 0.00 0.00 5.28
1813 1880 1.433879 GATGTCGGTGTCCTCGGAG 59.566 63.158 0.00 0.00 0.00 4.63
2007 2074 1.480954 GTATGGCAAGGAGAAGGTCGA 59.519 52.381 0.00 0.00 0.00 4.20
2030 2097 0.322456 TTTCAAGTCTCCCATGGCCG 60.322 55.000 6.09 0.00 0.00 6.13
2032 2099 4.115199 AAGTCTCCCATGGCCGCC 62.115 66.667 6.09 1.04 0.00 6.13
2150 2217 3.344215 CGATGAGGCTGCCGATGC 61.344 66.667 13.96 5.03 38.26 3.91
2210 2277 1.517475 GACGAGAAGAAGCCGGAGC 60.517 63.158 5.05 0.00 40.32 4.70
2212 2279 2.202810 GAGAAGAAGCCGGAGCCG 60.203 66.667 5.05 1.06 41.25 5.52
2257 2324 1.474879 GTCTTCTACGGAAGCAGAGCT 59.525 52.381 0.00 0.00 46.12 4.09
2322 2418 6.428771 AGAGACCTACTACGATTATTCAGAGC 59.571 42.308 0.00 0.00 0.00 4.09
2324 2420 4.820716 ACCTACTACGATTATTCAGAGCGT 59.179 41.667 0.00 0.00 38.81 5.07
2361 2457 6.942005 TCTCTTCTTGCAAAGGTATTGATTGA 59.058 34.615 0.00 0.00 46.24 2.57
2362 2458 7.613022 TCTCTTCTTGCAAAGGTATTGATTGAT 59.387 33.333 0.00 0.00 46.24 2.57
2363 2459 7.765307 TCTTCTTGCAAAGGTATTGATTGATC 58.235 34.615 0.00 0.00 46.24 2.92
2364 2460 7.394077 TCTTCTTGCAAAGGTATTGATTGATCA 59.606 33.333 0.00 0.00 46.24 2.92
2365 2461 7.092137 TCTTGCAAAGGTATTGATTGATCAG 57.908 36.000 0.00 0.00 46.24 2.90
2366 2462 6.885918 TCTTGCAAAGGTATTGATTGATCAGA 59.114 34.615 0.00 0.00 46.24 3.27
2367 2463 6.688637 TGCAAAGGTATTGATTGATCAGAG 57.311 37.500 0.00 0.00 38.19 3.35
2368 2464 6.182627 TGCAAAGGTATTGATTGATCAGAGT 58.817 36.000 0.00 0.00 38.19 3.24
2369 2465 6.094464 TGCAAAGGTATTGATTGATCAGAGTG 59.906 38.462 0.00 0.00 38.19 3.51
2370 2466 6.493116 CAAAGGTATTGATTGATCAGAGTGC 58.507 40.000 0.00 0.00 38.19 4.40
2371 2467 4.375272 AGGTATTGATTGATCAGAGTGCG 58.625 43.478 0.00 0.00 38.19 5.34
2372 2468 3.496130 GGTATTGATTGATCAGAGTGCGG 59.504 47.826 0.00 0.00 38.19 5.69
2373 2469 2.768253 TTGATTGATCAGAGTGCGGT 57.232 45.000 0.00 0.00 38.19 5.68
2374 2470 2.768253 TGATTGATCAGAGTGCGGTT 57.232 45.000 0.00 0.00 32.11 4.44
2375 2471 3.885724 TGATTGATCAGAGTGCGGTTA 57.114 42.857 0.00 0.00 32.11 2.85
2376 2472 3.785486 TGATTGATCAGAGTGCGGTTAG 58.215 45.455 0.00 0.00 32.11 2.34
2377 2473 3.447229 TGATTGATCAGAGTGCGGTTAGA 59.553 43.478 0.00 0.00 32.11 2.10
2378 2474 4.100035 TGATTGATCAGAGTGCGGTTAGAT 59.900 41.667 0.00 0.00 32.11 1.98
2379 2475 3.443099 TGATCAGAGTGCGGTTAGATG 57.557 47.619 0.00 0.00 0.00 2.90
2380 2476 2.101415 TGATCAGAGTGCGGTTAGATGG 59.899 50.000 0.00 0.00 0.00 3.51
2381 2477 1.557099 TCAGAGTGCGGTTAGATGGT 58.443 50.000 0.00 0.00 0.00 3.55
2382 2478 1.204704 TCAGAGTGCGGTTAGATGGTG 59.795 52.381 0.00 0.00 0.00 4.17
2383 2479 1.204704 CAGAGTGCGGTTAGATGGTGA 59.795 52.381 0.00 0.00 0.00 4.02
2384 2480 1.204941 AGAGTGCGGTTAGATGGTGAC 59.795 52.381 0.00 0.00 0.00 3.67
2385 2481 1.204941 GAGTGCGGTTAGATGGTGACT 59.795 52.381 0.00 0.00 0.00 3.41
2386 2482 2.426024 GAGTGCGGTTAGATGGTGACTA 59.574 50.000 0.00 0.00 0.00 2.59
2387 2483 2.427453 AGTGCGGTTAGATGGTGACTAG 59.573 50.000 0.00 0.00 0.00 2.57
2388 2484 1.754803 TGCGGTTAGATGGTGACTAGG 59.245 52.381 0.00 0.00 0.00 3.02
2389 2485 1.755380 GCGGTTAGATGGTGACTAGGT 59.245 52.381 0.00 0.00 0.00 3.08
2390 2486 2.167900 GCGGTTAGATGGTGACTAGGTT 59.832 50.000 0.00 0.00 0.00 3.50
2391 2487 3.369157 GCGGTTAGATGGTGACTAGGTTT 60.369 47.826 0.00 0.00 0.00 3.27
2392 2488 4.828829 CGGTTAGATGGTGACTAGGTTTT 58.171 43.478 0.00 0.00 0.00 2.43
2393 2489 4.630069 CGGTTAGATGGTGACTAGGTTTTG 59.370 45.833 0.00 0.00 0.00 2.44
2394 2490 5.568023 CGGTTAGATGGTGACTAGGTTTTGA 60.568 44.000 0.00 0.00 0.00 2.69
2395 2491 6.415573 GGTTAGATGGTGACTAGGTTTTGAT 58.584 40.000 0.00 0.00 0.00 2.57
2396 2492 6.884836 GGTTAGATGGTGACTAGGTTTTGATT 59.115 38.462 0.00 0.00 0.00 2.57
2397 2493 7.065923 GGTTAGATGGTGACTAGGTTTTGATTC 59.934 40.741 0.00 0.00 0.00 2.52
2404 2500 6.655003 GGTGACTAGGTTTTGATTCTTCATCA 59.345 38.462 0.00 0.00 40.43 3.07
2415 2511 6.990341 TGATTCTTCATCATCGTTGTTGAT 57.010 33.333 7.81 0.00 36.94 2.57
2426 2522 7.123160 TCATCGTTGTTGATTTGATTCGTTA 57.877 32.000 0.00 0.00 0.00 3.18
2428 2524 6.533819 TCGTTGTTGATTTGATTCGTTAGT 57.466 33.333 0.00 0.00 0.00 2.24
2429 2525 6.359545 TCGTTGTTGATTTGATTCGTTAGTG 58.640 36.000 0.00 0.00 0.00 2.74
2430 2526 5.058008 CGTTGTTGATTTGATTCGTTAGTGC 59.942 40.000 0.00 0.00 0.00 4.40
2431 2527 5.681337 TGTTGATTTGATTCGTTAGTGCA 57.319 34.783 0.00 0.00 0.00 4.57
2432 2528 6.066054 TGTTGATTTGATTCGTTAGTGCAA 57.934 33.333 0.00 0.00 0.00 4.08
2433 2529 6.676950 TGTTGATTTGATTCGTTAGTGCAAT 58.323 32.000 0.00 0.00 0.00 3.56
2434 2530 7.144661 TGTTGATTTGATTCGTTAGTGCAATT 58.855 30.769 0.00 0.00 0.00 2.32
2435 2531 7.114670 TGTTGATTTGATTCGTTAGTGCAATTG 59.885 33.333 0.00 0.00 0.00 2.32
2436 2532 5.572511 TGATTTGATTCGTTAGTGCAATTGC 59.427 36.000 23.69 23.69 42.50 3.56
2466 2562 6.902408 AGTACAGTACACCTCTAGCTAAGAT 58.098 40.000 13.37 0.00 32.41 2.40
2471 2567 7.614583 ACAGTACACCTCTAGCTAAGATTAACA 59.385 37.037 0.00 0.00 32.41 2.41
2476 2572 7.093289 ACACCTCTAGCTAAGATTAACATGTGT 60.093 37.037 0.00 0.00 32.41 3.72
2477 2573 7.223582 CACCTCTAGCTAAGATTAACATGTGTG 59.776 40.741 0.00 0.00 32.41 3.82
2478 2574 6.201806 CCTCTAGCTAAGATTAACATGTGTGC 59.798 42.308 0.00 0.00 32.41 4.57
2479 2575 4.864916 AGCTAAGATTAACATGTGTGCG 57.135 40.909 0.00 0.00 0.00 5.34
2480 2576 3.063997 AGCTAAGATTAACATGTGTGCGC 59.936 43.478 0.00 0.00 0.00 6.09
2481 2577 3.063997 GCTAAGATTAACATGTGTGCGCT 59.936 43.478 9.73 0.00 0.00 5.92
2491 2590 1.948104 TGTGTGCGCTAGAGTTTTGT 58.052 45.000 9.73 0.00 0.00 2.83
2496 2595 2.798283 GTGCGCTAGAGTTTTGTGTGTA 59.202 45.455 9.73 0.00 0.00 2.90
2498 2597 4.062293 TGCGCTAGAGTTTTGTGTGTATT 58.938 39.130 9.73 0.00 0.00 1.89
2500 2599 4.721226 GCGCTAGAGTTTTGTGTGTATTCG 60.721 45.833 0.00 0.00 0.00 3.34
2505 2604 0.875728 TTTTGTGTGTATTCGGCGGG 59.124 50.000 7.21 0.00 0.00 6.13
2576 2687 6.548171 TGTATAAAAACTGCGGTTATTCAGC 58.452 36.000 12.24 2.44 34.90 4.26
2577 2688 3.297830 AAAAACTGCGGTTATTCAGCC 57.702 42.857 12.24 0.00 36.45 4.85
2578 2689 2.200373 AAACTGCGGTTATTCAGCCT 57.800 45.000 12.24 0.00 36.45 4.58
2579 2690 1.453155 AACTGCGGTTATTCAGCCTG 58.547 50.000 9.79 0.00 36.45 4.85
2580 2691 1.026718 ACTGCGGTTATTCAGCCTGC 61.027 55.000 0.00 0.00 36.45 4.85
2581 2692 1.718757 CTGCGGTTATTCAGCCTGCC 61.719 60.000 0.00 0.00 36.45 4.85
2582 2693 1.748879 GCGGTTATTCAGCCTGCCA 60.749 57.895 0.00 0.00 0.00 4.92
2583 2694 1.103398 GCGGTTATTCAGCCTGCCAT 61.103 55.000 0.00 0.00 0.00 4.40
2584 2695 0.664761 CGGTTATTCAGCCTGCCATG 59.335 55.000 0.00 0.00 0.00 3.66
2585 2696 1.767759 GGTTATTCAGCCTGCCATGT 58.232 50.000 0.00 0.00 0.00 3.21
2586 2697 1.678101 GGTTATTCAGCCTGCCATGTC 59.322 52.381 0.00 0.00 0.00 3.06
2587 2698 1.678101 GTTATTCAGCCTGCCATGTCC 59.322 52.381 0.00 0.00 0.00 4.02
2590 2701 3.138798 CAGCCTGCCATGTCCTGC 61.139 66.667 0.00 0.00 0.00 4.85
2595 2706 1.452651 CTGCCATGTCCTGCGGAAT 60.453 57.895 0.00 0.00 35.88 3.01
2603 2714 3.667497 TGTCCTGCGGAATATCTGATC 57.333 47.619 0.00 0.00 31.38 2.92
2604 2715 2.300152 TGTCCTGCGGAATATCTGATCC 59.700 50.000 0.00 0.00 31.38 3.36
2606 2717 1.065854 CCTGCGGAATATCTGATCCCC 60.066 57.143 0.00 0.00 31.73 4.81
2608 2719 0.108138 GCGGAATATCTGATCCCCGG 60.108 60.000 19.59 0.00 37.62 5.73
2609 2720 0.537188 CGGAATATCTGATCCCCGGG 59.463 60.000 15.80 15.80 33.94 5.73
2610 2721 0.253327 GGAATATCTGATCCCCGGGC 59.747 60.000 17.73 1.24 0.00 6.13
2611 2722 0.253327 GAATATCTGATCCCCGGGCC 59.747 60.000 17.73 6.92 0.00 5.80
2612 2723 0.475632 AATATCTGATCCCCGGGCCA 60.476 55.000 17.73 11.70 0.00 5.36
2613 2724 1.201429 ATATCTGATCCCCGGGCCAC 61.201 60.000 17.73 8.61 0.00 5.01
2614 2725 2.326529 TATCTGATCCCCGGGCCACT 62.327 60.000 17.73 0.00 0.00 4.00
2615 2726 4.181010 CTGATCCCCGGGCCACTG 62.181 72.222 17.73 8.19 0.00 3.66
2624 2735 3.731728 GGGCCACTGCATCTGGGA 61.732 66.667 4.39 0.00 40.13 4.37
2625 2736 2.124403 GGCCACTGCATCTGGGAG 60.124 66.667 11.57 0.00 41.43 4.30
2626 2737 2.673200 GGCCACTGCATCTGGGAGA 61.673 63.158 11.57 0.00 38.52 3.71
2627 2738 1.530771 GCCACTGCATCTGGGAGAT 59.469 57.895 11.57 0.00 38.52 2.75
2634 2745 3.414486 CATCTGGGAGATGCATGCA 57.586 52.632 25.04 25.04 44.69 3.96
2635 2746 1.239347 CATCTGGGAGATGCATGCAG 58.761 55.000 26.69 10.51 44.69 4.41
2636 2747 0.537600 ATCTGGGAGATGCATGCAGC 60.538 55.000 27.98 27.98 45.96 5.25
2637 2748 2.124024 TGGGAGATGCATGCAGCC 60.124 61.111 30.96 25.93 44.83 4.85
2638 2749 2.124024 GGGAGATGCATGCAGCCA 60.124 61.111 30.96 4.92 44.83 4.75
2639 2750 2.487532 GGGAGATGCATGCAGCCAC 61.488 63.158 30.96 23.82 44.83 5.01
2640 2751 1.453379 GGAGATGCATGCAGCCACT 60.453 57.895 30.96 22.24 44.83 4.00
2641 2752 1.035932 GGAGATGCATGCAGCCACTT 61.036 55.000 30.96 13.89 44.83 3.16
2642 2753 0.815734 GAGATGCATGCAGCCACTTT 59.184 50.000 30.96 13.48 44.83 2.66
2643 2754 2.019249 GAGATGCATGCAGCCACTTTA 58.981 47.619 30.96 1.12 44.83 1.85
2644 2755 2.621998 GAGATGCATGCAGCCACTTTAT 59.378 45.455 30.96 11.90 44.83 1.40
2645 2756 3.028850 AGATGCATGCAGCCACTTTATT 58.971 40.909 30.96 8.32 44.83 1.40
2646 2757 4.209538 AGATGCATGCAGCCACTTTATTA 58.790 39.130 30.96 0.00 44.83 0.98
2647 2758 4.646040 AGATGCATGCAGCCACTTTATTAA 59.354 37.500 30.96 0.00 44.83 1.40
2648 2759 5.303589 AGATGCATGCAGCCACTTTATTAAT 59.696 36.000 30.96 6.33 44.83 1.40
2649 2760 4.935702 TGCATGCAGCCACTTTATTAATC 58.064 39.130 18.46 0.00 44.83 1.75
2650 2761 4.646040 TGCATGCAGCCACTTTATTAATCT 59.354 37.500 18.46 0.00 44.83 2.40
2651 2762 5.827267 TGCATGCAGCCACTTTATTAATCTA 59.173 36.000 18.46 0.00 44.83 1.98
2652 2763 6.320926 TGCATGCAGCCACTTTATTAATCTAA 59.679 34.615 18.46 0.00 44.83 2.10
2653 2764 7.014518 TGCATGCAGCCACTTTATTAATCTAAT 59.985 33.333 18.46 0.00 44.83 1.73
2654 2765 7.540055 GCATGCAGCCACTTTATTAATCTAATC 59.460 37.037 14.21 0.00 37.23 1.75
2655 2766 8.790718 CATGCAGCCACTTTATTAATCTAATCT 58.209 33.333 0.00 0.00 0.00 2.40
2656 2767 8.383318 TGCAGCCACTTTATTAATCTAATCTC 57.617 34.615 0.00 0.00 0.00 2.75
2657 2768 8.213679 TGCAGCCACTTTATTAATCTAATCTCT 58.786 33.333 0.00 0.00 0.00 3.10
2658 2769 8.502387 GCAGCCACTTTATTAATCTAATCTCTG 58.498 37.037 0.00 0.00 0.00 3.35
2659 2770 8.502387 CAGCCACTTTATTAATCTAATCTCTGC 58.498 37.037 0.00 0.00 0.00 4.26
2660 2771 7.663493 AGCCACTTTATTAATCTAATCTCTGCC 59.337 37.037 0.00 0.00 0.00 4.85
2661 2772 7.360438 GCCACTTTATTAATCTAATCTCTGCCG 60.360 40.741 0.00 0.00 0.00 5.69
2684 2795 6.677913 CGAAGGTTTTGGTTGTTAATCATCT 58.322 36.000 0.00 0.00 0.00 2.90
2691 2802 5.389859 TGGTTGTTAATCATCTTTGCTGG 57.610 39.130 0.00 0.00 0.00 4.85
2692 2803 4.832266 TGGTTGTTAATCATCTTTGCTGGT 59.168 37.500 0.00 0.00 0.00 4.00
2693 2804 5.163513 GGTTGTTAATCATCTTTGCTGGTG 58.836 41.667 0.00 0.00 0.00 4.17
2695 2806 6.215845 GTTGTTAATCATCTTTGCTGGTGTT 58.784 36.000 0.00 0.00 0.00 3.32
2696 2807 5.771469 TGTTAATCATCTTTGCTGGTGTTG 58.229 37.500 0.00 0.00 0.00 3.33
2697 2808 3.308438 AATCATCTTTGCTGGTGTTGC 57.692 42.857 0.00 0.00 0.00 4.17
2698 2809 0.592637 TCATCTTTGCTGGTGTTGCG 59.407 50.000 0.00 0.00 0.00 4.85
2699 2810 1.005294 CATCTTTGCTGGTGTTGCGC 61.005 55.000 0.00 0.00 0.00 6.09
2700 2811 2.462255 ATCTTTGCTGGTGTTGCGCG 62.462 55.000 0.00 0.00 0.00 6.86
2715 2826 0.168128 GCGCGCAATTACAAACTCCT 59.832 50.000 29.10 0.00 0.00 3.69
2716 2827 1.882198 CGCGCAATTACAAACTCCTG 58.118 50.000 8.75 0.00 0.00 3.86
2722 2833 4.094887 CGCAATTACAAACTCCTGCAGTAT 59.905 41.667 13.81 0.00 32.30 2.12
2927 3043 7.827819 TGTGAAACTAGTTATATCACTGCAC 57.172 36.000 27.16 13.28 40.70 4.57
2931 3047 8.717821 TGAAACTAGTTATATCACTGCACAAAC 58.282 33.333 8.92 0.00 0.00 2.93
2932 3048 8.848474 AAACTAGTTATATCACTGCACAAACT 57.152 30.769 8.92 0.00 0.00 2.66
2933 3049 8.848474 AACTAGTTATATCACTGCACAAACTT 57.152 30.769 6.26 0.00 0.00 2.66
2934 3050 8.256611 ACTAGTTATATCACTGCACAAACTTG 57.743 34.615 0.00 0.00 0.00 3.16
2936 3052 9.366216 CTAGTTATATCACTGCACAAACTTGTA 57.634 33.333 0.00 0.00 39.91 2.41
2937 3053 8.792830 AGTTATATCACTGCACAAACTTGTAT 57.207 30.769 0.00 0.00 39.91 2.29
2938 3054 9.231297 AGTTATATCACTGCACAAACTTGTATT 57.769 29.630 0.00 0.00 39.91 1.89
2941 3057 5.356882 TCACTGCACAAACTTGTATTAGC 57.643 39.130 0.00 0.00 39.91 3.09
2942 3058 4.819088 TCACTGCACAAACTTGTATTAGCA 59.181 37.500 5.52 5.52 39.91 3.49
2985 3101 2.880443 TCTTGCCAAATTCTTGCTCCT 58.120 42.857 0.00 0.00 0.00 3.69
2986 3102 2.559668 TCTTGCCAAATTCTTGCTCCTG 59.440 45.455 0.00 0.00 0.00 3.86
2987 3103 0.604578 TGCCAAATTCTTGCTCCTGC 59.395 50.000 0.00 0.00 40.20 4.85
2988 3104 0.108472 GCCAAATTCTTGCTCCTGCC 60.108 55.000 0.00 0.00 38.71 4.85
2989 3105 1.553706 CCAAATTCTTGCTCCTGCCT 58.446 50.000 0.00 0.00 38.71 4.75
2990 3106 1.475682 CCAAATTCTTGCTCCTGCCTC 59.524 52.381 0.00 0.00 38.71 4.70
2991 3107 1.475682 CAAATTCTTGCTCCTGCCTCC 59.524 52.381 0.00 0.00 38.71 4.30
3012 3128 3.200825 CCTATCATATGGATGGTCCCACC 59.799 52.174 2.13 0.00 39.34 4.61
3015 3131 1.133809 ATATGGATGGTCCCACCCCG 61.134 60.000 0.00 0.00 39.34 5.73
3057 3173 2.837591 AGCAAAGGAACACCTTGGTTTT 59.162 40.909 2.18 0.00 42.43 2.43
3074 3190 3.489229 GGTTTTGCTTCTTTCTTGAGCGT 60.489 43.478 0.00 0.00 0.00 5.07
3095 3290 3.723348 GTGGAGCCAACCGCGAAC 61.723 66.667 8.23 0.00 44.76 3.95
3105 3300 1.837538 AACCGCGAACCGTTGATGTG 61.838 55.000 8.23 0.00 34.38 3.21
3162 3357 3.251004 GCTGTGTTTTACCACTTCTCCTG 59.749 47.826 0.00 0.00 36.30 3.86
3170 3365 5.623956 TTACCACTTCTCCTGACAAGAAA 57.376 39.130 0.00 0.00 32.60 2.52
3194 3594 2.157863 GCAACGTAGAAAGACTGAAGCC 59.842 50.000 0.00 0.00 0.00 4.35
3239 3646 2.919228 ACTGCCTAATTCGTTGGATCC 58.081 47.619 4.20 4.20 0.00 3.36
3241 3648 3.117888 ACTGCCTAATTCGTTGGATCCAT 60.118 43.478 17.06 1.24 0.00 3.41
3243 3650 3.118075 TGCCTAATTCGTTGGATCCATGA 60.118 43.478 17.06 14.08 0.00 3.07
3252 3659 4.101430 TCGTTGGATCCATGATGAGATTGA 59.899 41.667 17.06 0.00 0.00 2.57
3299 3706 1.204704 TCTGGCTCTTCCACACATACG 59.795 52.381 0.00 0.00 40.72 3.06
3301 3708 0.249398 GGCTCTTCCACACATACGGT 59.751 55.000 0.00 0.00 34.01 4.83
3302 3709 1.479323 GGCTCTTCCACACATACGGTA 59.521 52.381 0.00 0.00 34.01 4.02
3303 3710 2.102588 GGCTCTTCCACACATACGGTAT 59.897 50.000 0.00 0.00 34.01 2.73
3304 3711 3.381949 GCTCTTCCACACATACGGTATC 58.618 50.000 0.00 0.00 0.00 2.24
3305 3712 3.068307 GCTCTTCCACACATACGGTATCT 59.932 47.826 0.00 0.00 0.00 1.98
3306 3713 4.793353 GCTCTTCCACACATACGGTATCTC 60.793 50.000 0.00 0.00 0.00 2.75
3307 3714 4.274978 TCTTCCACACATACGGTATCTCA 58.725 43.478 0.00 0.00 0.00 3.27
3308 3715 4.338400 TCTTCCACACATACGGTATCTCAG 59.662 45.833 0.00 0.00 0.00 3.35
3309 3716 2.956333 TCCACACATACGGTATCTCAGG 59.044 50.000 0.00 0.00 0.00 3.86
3310 3717 2.035961 CCACACATACGGTATCTCAGGG 59.964 54.545 0.00 0.00 0.00 4.45
3311 3718 1.687123 ACACATACGGTATCTCAGGGC 59.313 52.381 0.00 0.00 0.00 5.19
3312 3719 1.686587 CACATACGGTATCTCAGGGCA 59.313 52.381 0.00 0.00 0.00 5.36
3313 3720 2.102420 CACATACGGTATCTCAGGGCAA 59.898 50.000 0.00 0.00 0.00 4.52
3314 3721 2.102588 ACATACGGTATCTCAGGGCAAC 59.897 50.000 0.00 0.00 0.00 4.17
3315 3722 2.154567 TACGGTATCTCAGGGCAACT 57.845 50.000 0.00 0.00 0.00 3.16
3316 3723 0.824759 ACGGTATCTCAGGGCAACTC 59.175 55.000 0.00 0.00 0.00 3.01
3317 3724 0.105039 CGGTATCTCAGGGCAACTCC 59.895 60.000 0.00 0.00 0.00 3.85
3318 3725 1.204146 GGTATCTCAGGGCAACTCCA 58.796 55.000 0.00 0.00 36.21 3.86
3319 3726 1.559682 GGTATCTCAGGGCAACTCCAA 59.440 52.381 0.00 0.00 36.21 3.53
3320 3727 2.633488 GTATCTCAGGGCAACTCCAAC 58.367 52.381 0.00 0.00 36.21 3.77
3321 3728 1.067295 ATCTCAGGGCAACTCCAACA 58.933 50.000 0.00 0.00 36.21 3.33
3322 3729 0.108585 TCTCAGGGCAACTCCAACAC 59.891 55.000 0.00 0.00 36.21 3.32
3323 3730 0.179020 CTCAGGGCAACTCCAACACA 60.179 55.000 0.00 0.00 36.21 3.72
3324 3731 0.179020 TCAGGGCAACTCCAACACAG 60.179 55.000 0.00 0.00 36.21 3.66
3325 3732 1.529244 AGGGCAACTCCAACACAGC 60.529 57.895 0.00 0.00 36.21 4.40
3326 3733 2.639286 GGCAACTCCAACACAGCG 59.361 61.111 0.00 0.00 34.01 5.18
3327 3734 2.186826 GGCAACTCCAACACAGCGT 61.187 57.895 0.00 0.00 34.01 5.07
3328 3735 1.279840 GCAACTCCAACACAGCGTC 59.720 57.895 0.00 0.00 0.00 5.19
3329 3736 1.160329 GCAACTCCAACACAGCGTCT 61.160 55.000 0.00 0.00 0.00 4.18
3330 3737 0.861837 CAACTCCAACACAGCGTCTC 59.138 55.000 0.00 0.00 0.00 3.36
3331 3738 0.597637 AACTCCAACACAGCGTCTCG 60.598 55.000 0.00 0.00 0.00 4.04
3332 3739 1.734477 CTCCAACACAGCGTCTCGG 60.734 63.158 0.00 0.00 0.00 4.63
3333 3740 3.414700 CCAACACAGCGTCTCGGC 61.415 66.667 0.00 0.00 0.00 5.54
3334 3741 2.356313 CAACACAGCGTCTCGGCT 60.356 61.111 0.00 0.00 46.13 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.863740 CGAGCTTCGTGCCATAATTACA 59.136 45.455 0.00 0.00 44.23 2.41
18 19 3.837213 AAATTTGTGGATGACAGCGAG 57.163 42.857 0.00 0.00 35.44 5.03
20 21 4.154015 TGTCTAAATTTGTGGATGACAGCG 59.846 41.667 0.00 0.00 35.44 5.18
54 55 3.557898 GGTCGTGATGAGCCATGGATTAT 60.558 47.826 18.40 12.44 39.22 1.28
56 57 1.475751 GGTCGTGATGAGCCATGGATT 60.476 52.381 18.40 1.53 39.22 3.01
63 64 0.176680 ATCTGTGGTCGTGATGAGCC 59.823 55.000 0.93 0.00 44.62 4.70
85 86 1.944709 GCTTTTACTGTTCACCCGTGT 59.055 47.619 0.00 0.00 0.00 4.49
87 88 1.134037 TGGCTTTTACTGTTCACCCGT 60.134 47.619 0.00 0.00 0.00 5.28
163 165 1.201414 CCGCCATAAAATATTCCGCCC 59.799 52.381 0.00 0.00 0.00 6.13
171 173 5.419155 TCCAATGTCAAACCGCCATAAAATA 59.581 36.000 0.00 0.00 0.00 1.40
235 237 9.913310 TTTTGGGAAAGGTTCAGAAAATTTTAT 57.087 25.926 2.75 0.00 0.00 1.40
237 239 7.667635 TGTTTTGGGAAAGGTTCAGAAAATTTT 59.332 29.630 2.28 2.28 0.00 1.82
238 240 7.120579 GTGTTTTGGGAAAGGTTCAGAAAATTT 59.879 33.333 0.00 0.00 0.00 1.82
240 242 6.112734 GTGTTTTGGGAAAGGTTCAGAAAAT 58.887 36.000 0.00 0.00 0.00 1.82
245 247 3.699038 TCTGTGTTTTGGGAAAGGTTCAG 59.301 43.478 0.00 0.00 0.00 3.02
247 249 4.937201 ATCTGTGTTTTGGGAAAGGTTC 57.063 40.909 0.00 0.00 0.00 3.62
256 258 6.092533 AGACAAAAGCAAAATCTGTGTTTTGG 59.907 34.615 16.53 0.00 44.97 3.28
258 260 8.250332 TCTAGACAAAAGCAAAATCTGTGTTTT 58.750 29.630 0.00 0.00 31.66 2.43
264 266 6.251655 AGCTCTAGACAAAAGCAAAATCTG 57.748 37.500 4.01 0.00 38.51 2.90
265 267 5.121454 CGAGCTCTAGACAAAAGCAAAATCT 59.879 40.000 12.85 0.00 38.51 2.40
273 275 2.161808 TCGGACGAGCTCTAGACAAAAG 59.838 50.000 12.85 0.00 0.00 2.27
281 283 3.200593 GGCGTCGGACGAGCTCTA 61.201 66.667 32.48 0.00 46.05 2.43
288 290 4.204891 GCGATTTGGCGTCGGACG 62.205 66.667 25.18 25.18 45.88 4.79
299 301 3.123284 CGTGCAAAATTTCATGGCGATTT 59.877 39.130 0.00 0.00 0.00 2.17
304 306 1.726248 GGACGTGCAAAATTTCATGGC 59.274 47.619 0.63 0.00 0.00 4.40
365 367 8.141835 AGGAATAGCAAAACAACAAACAAATC 57.858 30.769 0.00 0.00 0.00 2.17
397 399 2.334023 GGAGCATCTCCTCCCAGTAAT 58.666 52.381 5.65 0.00 46.41 1.89
409 411 3.244353 CGATTTGGTGATAGGGAGCATCT 60.244 47.826 0.00 0.00 33.73 2.90
534 536 1.374252 AGTTCACATCGGTCGGTGC 60.374 57.895 3.31 0.00 35.04 5.01
569 571 2.675844 TCGTGTCAAGTGTCCAAGTTTG 59.324 45.455 0.00 0.00 0.00 2.93
624 628 4.081862 AGGGATGATTTGACAGCAACATTG 60.082 41.667 0.00 0.00 32.79 2.82
639 643 3.713248 TGTCTACATTGCTGAGGGATGAT 59.287 43.478 0.00 0.00 0.00 2.45
679 683 3.245371 ACCATGATGGCTGGAGAAAAAGA 60.245 43.478 12.25 0.00 42.67 2.52
688 692 0.467474 ATGCAGACCATGATGGCTGG 60.467 55.000 26.04 13.01 42.67 4.85
689 693 1.399714 AATGCAGACCATGATGGCTG 58.600 50.000 22.98 22.98 42.67 4.85
731 740 2.354403 GCCATCGGGTAGTAGTTGTTGT 60.354 50.000 0.00 0.00 36.17 3.32
766 793 1.745115 CCGCAATTCTTGGCCTCGA 60.745 57.895 3.32 0.00 0.00 4.04
889 916 1.633774 GAGAGAGAGTTGGTGGTGGA 58.366 55.000 0.00 0.00 0.00 4.02
898 925 2.158081 AGGACTTTGGGGAGAGAGAGTT 60.158 50.000 0.00 0.00 0.00 3.01
921 952 6.547141 ACTGACTCTTGGAATTGTTTGATTGA 59.453 34.615 0.00 0.00 0.00 2.57
922 953 6.639686 CACTGACTCTTGGAATTGTTTGATTG 59.360 38.462 0.00 0.00 0.00 2.67
923 954 6.547141 TCACTGACTCTTGGAATTGTTTGATT 59.453 34.615 0.00 0.00 0.00 2.57
924 955 6.064060 TCACTGACTCTTGGAATTGTTTGAT 58.936 36.000 0.00 0.00 0.00 2.57
925 956 5.436175 TCACTGACTCTTGGAATTGTTTGA 58.564 37.500 0.00 0.00 0.00 2.69
926 957 5.528690 TCTCACTGACTCTTGGAATTGTTTG 59.471 40.000 0.00 0.00 0.00 2.93
927 958 5.684704 TCTCACTGACTCTTGGAATTGTTT 58.315 37.500 0.00 0.00 0.00 2.83
928 959 5.296151 TCTCACTGACTCTTGGAATTGTT 57.704 39.130 0.00 0.00 0.00 2.83
940 972 1.269831 GCAGACGGTTTCTCACTGACT 60.270 52.381 0.00 0.00 37.26 3.41
959 991 0.040958 CGTGGAGTCTTTGCAGTTGC 60.041 55.000 0.00 0.00 42.50 4.17
969 1001 1.302033 CTTGCTTGCCGTGGAGTCT 60.302 57.895 0.00 0.00 0.00 3.24
970 1002 2.328099 CCTTGCTTGCCGTGGAGTC 61.328 63.158 0.00 0.00 0.00 3.36
972 1004 2.032528 TCCTTGCTTGCCGTGGAG 59.967 61.111 0.00 0.00 0.00 3.86
973 1005 2.032528 CTCCTTGCTTGCCGTGGA 59.967 61.111 0.00 0.00 0.00 4.02
974 1006 3.741476 GCTCCTTGCTTGCCGTGG 61.741 66.667 0.00 0.00 38.95 4.94
975 1007 2.979676 TGCTCCTTGCTTGCCGTG 60.980 61.111 0.00 0.00 43.37 4.94
978 1010 4.410743 GCGTGCTCCTTGCTTGCC 62.411 66.667 0.00 0.00 43.37 4.52
979 1011 2.034879 TAGCGTGCTCCTTGCTTGC 61.035 57.895 0.00 0.00 43.37 4.01
980 1012 1.639298 GGTAGCGTGCTCCTTGCTTG 61.639 60.000 0.00 0.00 43.37 4.01
981 1013 1.376037 GGTAGCGTGCTCCTTGCTT 60.376 57.895 0.00 0.00 43.37 3.91
982 1014 2.266055 GGTAGCGTGCTCCTTGCT 59.734 61.111 0.00 0.00 43.37 3.91
983 1015 2.047274 TGGTAGCGTGCTCCTTGC 60.047 61.111 0.00 0.00 43.25 4.01
984 1016 0.459237 CTCTGGTAGCGTGCTCCTTG 60.459 60.000 0.00 0.00 0.00 3.61
985 1017 0.612174 TCTCTGGTAGCGTGCTCCTT 60.612 55.000 0.00 0.00 0.00 3.36
986 1018 0.396417 ATCTCTGGTAGCGTGCTCCT 60.396 55.000 0.00 0.00 0.00 3.69
987 1019 0.461961 AATCTCTGGTAGCGTGCTCC 59.538 55.000 0.00 0.46 0.00 4.70
988 1020 2.301577 AAATCTCTGGTAGCGTGCTC 57.698 50.000 0.00 0.00 0.00 4.26
989 1021 3.430929 CCTTAAATCTCTGGTAGCGTGCT 60.431 47.826 0.00 0.00 0.00 4.40
990 1022 2.866762 CCTTAAATCTCTGGTAGCGTGC 59.133 50.000 0.00 0.00 0.00 5.34
991 1023 4.113354 GACCTTAAATCTCTGGTAGCGTG 58.887 47.826 0.00 0.00 32.30 5.34
992 1024 3.132467 GGACCTTAAATCTCTGGTAGCGT 59.868 47.826 0.00 0.00 32.30 5.07
993 1025 3.132289 TGGACCTTAAATCTCTGGTAGCG 59.868 47.826 0.00 0.00 32.30 4.26
994 1026 4.755266 TGGACCTTAAATCTCTGGTAGC 57.245 45.455 0.00 0.00 32.30 3.58
995 1027 6.485830 TCATGGACCTTAAATCTCTGGTAG 57.514 41.667 0.00 0.00 32.30 3.18
996 1028 6.239317 CGATCATGGACCTTAAATCTCTGGTA 60.239 42.308 0.00 0.00 32.30 3.25
999 1031 5.605534 ACGATCATGGACCTTAAATCTCTG 58.394 41.667 0.00 0.00 0.00 3.35
1003 1035 6.642950 CACTAGACGATCATGGACCTTAAATC 59.357 42.308 0.00 0.00 0.00 2.17
1006 1038 4.202121 GCACTAGACGATCATGGACCTTAA 60.202 45.833 0.00 0.00 0.00 1.85
1044 1091 1.147824 ATTGATCTGCTCCGCCAGG 59.852 57.895 0.00 0.00 39.46 4.45
1046 1093 1.153107 CCATTGATCTGCTCCGCCA 60.153 57.895 0.00 0.00 0.00 5.69
1051 1098 0.883814 CCGGCTCCATTGATCTGCTC 60.884 60.000 0.00 0.00 0.00 4.26
1052 1099 1.147824 CCGGCTCCATTGATCTGCT 59.852 57.895 0.00 0.00 0.00 4.24
1053 1100 2.550101 GCCGGCTCCATTGATCTGC 61.550 63.158 22.15 0.00 0.00 4.26
1055 1102 2.109799 CGCCGGCTCCATTGATCT 59.890 61.111 26.68 0.00 0.00 2.75
1057 1104 2.203070 GTCGCCGGCTCCATTGAT 60.203 61.111 26.68 0.00 0.00 2.57
1058 1105 4.812476 CGTCGCCGGCTCCATTGA 62.812 66.667 26.68 10.44 0.00 2.57
1069 1118 3.110178 CACCGGAAGAACGTCGCC 61.110 66.667 9.46 0.00 0.00 5.54
1072 1121 2.355481 ACGCACCGGAAGAACGTC 60.355 61.111 9.46 0.00 29.64 4.34
1074 1123 4.072088 GCACGCACCGGAAGAACG 62.072 66.667 9.46 6.63 0.00 3.95
1075 1124 3.723348 GGCACGCACCGGAAGAAC 61.723 66.667 9.46 0.00 0.00 3.01
1096 1145 2.758327 TCGTCGTCCTCCCCATGG 60.758 66.667 4.14 4.14 0.00 3.66
1101 1150 4.157958 CGTCGTCGTCGTCCTCCC 62.158 72.222 3.67 0.00 38.33 4.30
1384 1451 2.991321 TCCTCGAGGACGCTCTCT 59.009 61.111 30.49 0.00 39.78 3.10
1486 1553 2.095461 TGGGTGAGATCTGTCGAAGAG 58.905 52.381 0.00 0.00 38.67 2.85
1489 1556 1.819288 GAGTGGGTGAGATCTGTCGAA 59.181 52.381 0.00 0.00 0.00 3.71
1492 1559 0.179124 GCGAGTGGGTGAGATCTGTC 60.179 60.000 0.00 0.00 0.00 3.51
1495 1562 2.060980 GGGCGAGTGGGTGAGATCT 61.061 63.158 0.00 0.00 0.00 2.75
1615 1682 0.615331 GCTCAAGGATGACCACCTCA 59.385 55.000 0.00 0.00 36.67 3.86
1750 1817 2.959484 CGTCTCCATGGCCACCTGT 61.959 63.158 8.16 0.00 0.00 4.00
1751 1818 2.124983 CGTCTCCATGGCCACCTG 60.125 66.667 8.16 2.59 0.00 4.00
1752 1819 3.402681 CCGTCTCCATGGCCACCT 61.403 66.667 8.16 0.00 0.00 4.00
1753 1820 4.489771 CCCGTCTCCATGGCCACC 62.490 72.222 8.16 0.00 0.00 4.61
1799 1866 3.214190 TTCCCTCCGAGGACACCGA 62.214 63.158 16.69 1.00 37.67 4.69
1813 1880 2.391389 CGAGGCGTTCTTGCTTCCC 61.391 63.158 0.00 0.00 37.66 3.97
1981 2048 3.385749 CTCCTTGCCATACGCCGGT 62.386 63.158 1.90 0.00 36.24 5.28
1982 2049 2.587322 TTCTCCTTGCCATACGCCGG 62.587 60.000 0.00 0.00 36.24 6.13
1989 2056 0.250513 GTCGACCTTCTCCTTGCCAT 59.749 55.000 3.51 0.00 0.00 4.40
2007 2074 2.504367 CCATGGGAGACTTGAAAACGT 58.496 47.619 2.85 0.00 0.00 3.99
2185 2252 1.178276 GCTTCTTCTCGTCCCTCTGA 58.822 55.000 0.00 0.00 0.00 3.27
2210 2277 3.839432 GTCCTTCCTCGCCTCCGG 61.839 72.222 0.00 0.00 34.56 5.14
2212 2279 3.839432 CCGTCCTTCCTCGCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
2239 2306 2.663826 AAGCTCTGCTTCCGTAGAAG 57.336 50.000 0.00 0.00 46.77 2.85
2276 2372 9.424319 GTCTCTTCACAACACTCTGAATAATTA 57.576 33.333 0.00 0.00 0.00 1.40
2322 2418 5.447010 GCAAGAAGAGATCAGATTTTCCACG 60.447 44.000 0.00 0.00 0.00 4.94
2324 2420 5.563592 TGCAAGAAGAGATCAGATTTTCCA 58.436 37.500 0.00 0.00 0.00 3.53
2361 2457 2.111384 ACCATCTAACCGCACTCTGAT 58.889 47.619 0.00 0.00 0.00 2.90
2362 2458 1.204704 CACCATCTAACCGCACTCTGA 59.795 52.381 0.00 0.00 0.00 3.27
2363 2459 1.204704 TCACCATCTAACCGCACTCTG 59.795 52.381 0.00 0.00 0.00 3.35
2364 2460 1.204941 GTCACCATCTAACCGCACTCT 59.795 52.381 0.00 0.00 0.00 3.24
2365 2461 1.204941 AGTCACCATCTAACCGCACTC 59.795 52.381 0.00 0.00 0.00 3.51
2366 2462 1.267121 AGTCACCATCTAACCGCACT 58.733 50.000 0.00 0.00 0.00 4.40
2367 2463 2.481449 CCTAGTCACCATCTAACCGCAC 60.481 54.545 0.00 0.00 0.00 5.34
2368 2464 1.754803 CCTAGTCACCATCTAACCGCA 59.245 52.381 0.00 0.00 0.00 5.69
2369 2465 1.755380 ACCTAGTCACCATCTAACCGC 59.245 52.381 0.00 0.00 0.00 5.68
2370 2466 4.467198 AAACCTAGTCACCATCTAACCG 57.533 45.455 0.00 0.00 0.00 4.44
2371 2467 5.801380 TCAAAACCTAGTCACCATCTAACC 58.199 41.667 0.00 0.00 0.00 2.85
2372 2468 7.824779 AGAATCAAAACCTAGTCACCATCTAAC 59.175 37.037 0.00 0.00 0.00 2.34
2373 2469 7.918076 AGAATCAAAACCTAGTCACCATCTAA 58.082 34.615 0.00 0.00 0.00 2.10
2374 2470 7.496346 AGAATCAAAACCTAGTCACCATCTA 57.504 36.000 0.00 0.00 0.00 1.98
2375 2471 6.380079 AGAATCAAAACCTAGTCACCATCT 57.620 37.500 0.00 0.00 0.00 2.90
2376 2472 6.655003 TGAAGAATCAAAACCTAGTCACCATC 59.345 38.462 0.00 0.00 30.99 3.51
2377 2473 6.542821 TGAAGAATCAAAACCTAGTCACCAT 58.457 36.000 0.00 0.00 30.99 3.55
2378 2474 5.935945 TGAAGAATCAAAACCTAGTCACCA 58.064 37.500 0.00 0.00 30.99 4.17
2379 2475 6.655003 TGATGAAGAATCAAAACCTAGTCACC 59.345 38.462 0.00 0.00 42.49 4.02
2380 2476 7.672983 TGATGAAGAATCAAAACCTAGTCAC 57.327 36.000 0.00 0.00 42.49 3.67
2393 2489 7.964559 TCAAATCAACAACGATGATGAAGAATC 59.035 33.333 9.58 0.00 41.06 2.52
2394 2490 7.819644 TCAAATCAACAACGATGATGAAGAAT 58.180 30.769 9.58 0.00 41.06 2.40
2395 2491 7.200778 TCAAATCAACAACGATGATGAAGAA 57.799 32.000 9.58 0.00 41.06 2.52
2396 2492 6.799926 TCAAATCAACAACGATGATGAAGA 57.200 33.333 9.58 6.01 41.06 2.87
2397 2493 7.045160 CGAATCAAATCAACAACGATGATGAAG 60.045 37.037 9.58 3.99 41.06 3.02
2404 2500 7.015289 CACTAACGAATCAAATCAACAACGAT 58.985 34.615 0.00 0.00 0.00 3.73
2429 2525 6.526674 GGTGTACTGTACTAATTTGCAATTGC 59.473 38.462 23.69 23.69 42.50 3.56
2430 2526 7.816640 AGGTGTACTGTACTAATTTGCAATTG 58.183 34.615 17.98 0.00 0.00 2.32
2431 2527 7.883311 AGAGGTGTACTGTACTAATTTGCAATT 59.117 33.333 17.98 0.00 0.00 2.32
2432 2528 7.394816 AGAGGTGTACTGTACTAATTTGCAAT 58.605 34.615 17.98 0.00 0.00 3.56
2433 2529 6.765403 AGAGGTGTACTGTACTAATTTGCAA 58.235 36.000 17.98 0.00 0.00 4.08
2434 2530 6.354794 AGAGGTGTACTGTACTAATTTGCA 57.645 37.500 17.98 0.00 0.00 4.08
2435 2531 6.476053 GCTAGAGGTGTACTGTACTAATTTGC 59.524 42.308 17.98 10.65 0.00 3.68
2436 2532 7.773149 AGCTAGAGGTGTACTGTACTAATTTG 58.227 38.462 17.98 5.55 0.00 2.32
2437 2533 7.957992 AGCTAGAGGTGTACTGTACTAATTT 57.042 36.000 17.98 5.16 0.00 1.82
2438 2534 9.122779 CTTAGCTAGAGGTGTACTGTACTAATT 57.877 37.037 17.98 2.69 0.00 1.40
2439 2535 8.492782 TCTTAGCTAGAGGTGTACTGTACTAAT 58.507 37.037 17.98 4.60 0.00 1.73
2447 2543 8.634444 CATGTTAATCTTAGCTAGAGGTGTACT 58.366 37.037 0.00 0.00 36.02 2.73
2449 2545 8.414003 CACATGTTAATCTTAGCTAGAGGTGTA 58.586 37.037 0.00 0.00 36.02 2.90
2451 2547 7.223582 CACACATGTTAATCTTAGCTAGAGGTG 59.776 40.741 0.00 0.00 36.02 4.00
2466 2562 3.313012 ACTCTAGCGCACACATGTTAA 57.687 42.857 11.47 0.00 0.00 2.01
2471 2567 2.224079 CACAAAACTCTAGCGCACACAT 59.776 45.455 11.47 0.00 0.00 3.21
2476 2572 1.948104 ACACACAAAACTCTAGCGCA 58.052 45.000 11.47 0.00 0.00 6.09
2477 2573 4.638963 GAATACACACAAAACTCTAGCGC 58.361 43.478 0.00 0.00 0.00 5.92
2478 2574 4.201589 CCGAATACACACAAAACTCTAGCG 60.202 45.833 0.00 0.00 0.00 4.26
2479 2575 4.435651 GCCGAATACACACAAAACTCTAGC 60.436 45.833 0.00 0.00 0.00 3.42
2480 2576 4.201589 CGCCGAATACACACAAAACTCTAG 60.202 45.833 0.00 0.00 0.00 2.43
2481 2577 3.676172 CGCCGAATACACACAAAACTCTA 59.324 43.478 0.00 0.00 0.00 2.43
2491 2590 2.185867 GCTCCCGCCGAATACACA 59.814 61.111 0.00 0.00 0.00 3.72
2496 2595 4.537433 GCTCTGCTCCCGCCGAAT 62.537 66.667 0.00 0.00 34.43 3.34
2500 2599 2.360475 AAAAGCTCTGCTCCCGCC 60.360 61.111 0.00 0.00 38.25 6.13
2505 2604 4.314121 TCTTCAGAAGAAAAGCTCTGCTC 58.686 43.478 10.68 0.00 38.09 4.26
2587 2698 1.404717 CGGGGATCAGATATTCCGCAG 60.405 57.143 8.47 0.00 43.24 5.18
2590 2701 0.537188 CCCGGGGATCAGATATTCCG 59.463 60.000 14.71 10.15 37.50 4.30
2595 2706 1.841556 GTGGCCCGGGGATCAGATA 60.842 63.158 25.28 0.00 0.00 1.98
2608 2719 1.992519 ATCTCCCAGATGCAGTGGCC 61.993 60.000 11.70 0.00 40.13 5.36
2609 2720 0.818445 CATCTCCCAGATGCAGTGGC 60.818 60.000 11.70 0.00 44.69 5.01
2610 2721 3.398694 CATCTCCCAGATGCAGTGG 57.601 57.895 10.41 10.41 44.69 4.00
2617 2728 0.537600 GCTGCATGCATCTCCCAGAT 60.538 55.000 22.97 0.00 42.31 2.90
2618 2729 1.153025 GCTGCATGCATCTCCCAGA 60.153 57.895 22.97 0.00 42.31 3.86
2619 2730 2.194212 GGCTGCATGCATCTCCCAG 61.194 63.158 22.97 8.76 45.15 4.45
2620 2731 2.124024 GGCTGCATGCATCTCCCA 60.124 61.111 22.97 0.00 45.15 4.37
2621 2732 2.124024 TGGCTGCATGCATCTCCC 60.124 61.111 22.97 18.47 45.15 4.30
2622 2733 1.035932 AAGTGGCTGCATGCATCTCC 61.036 55.000 22.97 21.43 45.15 3.71
2623 2734 0.815734 AAAGTGGCTGCATGCATCTC 59.184 50.000 22.97 16.38 45.15 2.75
2624 2735 2.133281 TAAAGTGGCTGCATGCATCT 57.867 45.000 22.97 14.03 45.15 2.90
2625 2736 3.447918 AATAAAGTGGCTGCATGCATC 57.552 42.857 22.97 17.75 45.15 3.91
2626 2737 5.303589 AGATTAATAAAGTGGCTGCATGCAT 59.696 36.000 22.97 6.91 45.15 3.96
2627 2738 4.646040 AGATTAATAAAGTGGCTGCATGCA 59.354 37.500 21.29 21.29 45.15 3.96
2628 2739 5.192327 AGATTAATAAAGTGGCTGCATGC 57.808 39.130 11.82 11.82 41.94 4.06
2629 2740 8.790718 AGATTAGATTAATAAAGTGGCTGCATG 58.209 33.333 0.50 0.00 0.00 4.06
2630 2741 8.930846 AGATTAGATTAATAAAGTGGCTGCAT 57.069 30.769 0.50 0.00 0.00 3.96
2631 2742 8.213679 AGAGATTAGATTAATAAAGTGGCTGCA 58.786 33.333 0.50 0.00 0.00 4.41
2632 2743 8.502387 CAGAGATTAGATTAATAAAGTGGCTGC 58.498 37.037 0.00 0.00 0.00 5.25
2633 2744 8.502387 GCAGAGATTAGATTAATAAAGTGGCTG 58.498 37.037 0.00 0.00 0.00 4.85
2634 2745 7.663493 GGCAGAGATTAGATTAATAAAGTGGCT 59.337 37.037 0.00 0.00 0.00 4.75
2635 2746 7.360438 CGGCAGAGATTAGATTAATAAAGTGGC 60.360 40.741 0.00 0.00 0.00 5.01
2636 2747 7.872993 TCGGCAGAGATTAGATTAATAAAGTGG 59.127 37.037 0.00 0.00 0.00 4.00
2637 2748 8.818141 TCGGCAGAGATTAGATTAATAAAGTG 57.182 34.615 0.00 0.00 0.00 3.16
2638 2749 9.482627 CTTCGGCAGAGATTAGATTAATAAAGT 57.517 33.333 0.00 0.00 0.00 2.66
2639 2750 8.930760 CCTTCGGCAGAGATTAGATTAATAAAG 58.069 37.037 0.00 0.00 0.00 1.85
2640 2751 8.429641 ACCTTCGGCAGAGATTAGATTAATAAA 58.570 33.333 0.00 0.00 0.00 1.40
2641 2752 7.963532 ACCTTCGGCAGAGATTAGATTAATAA 58.036 34.615 0.00 0.00 0.00 1.40
2642 2753 7.540474 ACCTTCGGCAGAGATTAGATTAATA 57.460 36.000 0.00 0.00 0.00 0.98
2643 2754 6.426646 ACCTTCGGCAGAGATTAGATTAAT 57.573 37.500 0.00 0.00 0.00 1.40
2644 2755 5.871396 ACCTTCGGCAGAGATTAGATTAA 57.129 39.130 0.00 0.00 0.00 1.40
2645 2756 5.871396 AACCTTCGGCAGAGATTAGATTA 57.129 39.130 0.00 0.00 0.00 1.75
2646 2757 4.762289 AACCTTCGGCAGAGATTAGATT 57.238 40.909 0.00 0.00 0.00 2.40
2647 2758 4.762289 AAACCTTCGGCAGAGATTAGAT 57.238 40.909 0.00 0.00 0.00 1.98
2648 2759 4.253685 CAAAACCTTCGGCAGAGATTAGA 58.746 43.478 0.00 0.00 0.00 2.10
2649 2760 3.375299 CCAAAACCTTCGGCAGAGATTAG 59.625 47.826 0.00 0.00 0.00 1.73
2650 2761 3.244770 ACCAAAACCTTCGGCAGAGATTA 60.245 43.478 0.00 0.00 0.00 1.75
2651 2762 2.162681 CCAAAACCTTCGGCAGAGATT 58.837 47.619 0.00 0.00 0.00 2.40
2652 2763 1.073923 ACCAAAACCTTCGGCAGAGAT 59.926 47.619 0.00 0.00 0.00 2.75
2653 2764 0.472471 ACCAAAACCTTCGGCAGAGA 59.528 50.000 0.00 0.00 0.00 3.10
2654 2765 1.001378 CAACCAAAACCTTCGGCAGAG 60.001 52.381 0.00 0.00 0.00 3.35
2655 2766 1.028905 CAACCAAAACCTTCGGCAGA 58.971 50.000 0.00 0.00 0.00 4.26
2656 2767 0.744281 ACAACCAAAACCTTCGGCAG 59.256 50.000 0.00 0.00 0.00 4.85
2657 2768 1.187087 AACAACCAAAACCTTCGGCA 58.813 45.000 0.00 0.00 0.00 5.69
2658 2769 3.439895 TTAACAACCAAAACCTTCGGC 57.560 42.857 0.00 0.00 0.00 5.54
2659 2770 5.189659 TGATTAACAACCAAAACCTTCGG 57.810 39.130 0.00 0.00 0.00 4.30
2660 2771 6.677913 AGATGATTAACAACCAAAACCTTCG 58.322 36.000 0.00 0.00 0.00 3.79
2661 2772 8.764287 CAAAGATGATTAACAACCAAAACCTTC 58.236 33.333 0.00 0.00 0.00 3.46
2671 2782 5.772521 ACACCAGCAAAGATGATTAACAAC 58.227 37.500 0.00 0.00 0.00 3.32
2676 2787 3.119884 CGCAACACCAGCAAAGATGATTA 60.120 43.478 0.00 0.00 0.00 1.75
2684 2795 4.921847 GCGCGCAACACCAGCAAA 62.922 61.111 29.10 0.00 0.00 3.68
2691 2802 1.124462 TTTGTAATTGCGCGCAACAC 58.876 45.000 44.93 39.33 38.88 3.32
2692 2803 1.124462 GTTTGTAATTGCGCGCAACA 58.876 45.000 44.93 35.91 38.88 3.33
2693 2804 1.382088 GAGTTTGTAATTGCGCGCAAC 59.618 47.619 44.93 33.80 38.88 4.17
2695 2806 0.109964 GGAGTTTGTAATTGCGCGCA 60.110 50.000 33.09 33.09 0.00 6.09
2696 2807 0.168128 AGGAGTTTGTAATTGCGCGC 59.832 50.000 27.26 27.26 0.00 6.86
2697 2808 1.882198 CAGGAGTTTGTAATTGCGCG 58.118 50.000 0.00 0.00 0.00 6.86
2698 2809 1.068610 TGCAGGAGTTTGTAATTGCGC 60.069 47.619 0.00 0.00 34.44 6.09
2699 2810 2.226437 ACTGCAGGAGTTTGTAATTGCG 59.774 45.455 19.93 0.00 34.44 4.85
2700 2811 3.923017 ACTGCAGGAGTTTGTAATTGC 57.077 42.857 19.93 0.00 0.00 3.56
2715 2826 6.762333 AGCAAGACATATCACATATACTGCA 58.238 36.000 0.00 0.00 0.00 4.41
2716 2827 8.763049 TTAGCAAGACATATCACATATACTGC 57.237 34.615 0.00 0.00 0.00 4.40
2800 2911 2.235898 AGAGGAGATCTGACCAAGCAAC 59.764 50.000 0.00 0.00 36.69 4.17
2927 3043 6.170506 TGAGTACCCTGCTAATACAAGTTTG 58.829 40.000 0.00 0.00 0.00 2.93
2931 3047 5.978814 ACTTGAGTACCCTGCTAATACAAG 58.021 41.667 0.00 0.00 38.34 3.16
2932 3048 7.497595 CATACTTGAGTACCCTGCTAATACAA 58.502 38.462 0.00 0.00 32.72 2.41
2933 3049 6.462487 GCATACTTGAGTACCCTGCTAATACA 60.462 42.308 7.60 0.00 33.56 2.29
2934 3050 5.927115 GCATACTTGAGTACCCTGCTAATAC 59.073 44.000 7.60 0.00 33.56 1.89
2936 3052 4.656112 AGCATACTTGAGTACCCTGCTAAT 59.344 41.667 13.32 0.00 40.51 1.73
2937 3053 4.030913 AGCATACTTGAGTACCCTGCTAA 58.969 43.478 13.32 0.00 40.51 3.09
2938 3054 3.384789 CAGCATACTTGAGTACCCTGCTA 59.615 47.826 14.14 0.00 40.40 3.49
2939 3055 2.169352 CAGCATACTTGAGTACCCTGCT 59.831 50.000 10.45 10.45 42.03 4.24
2940 3056 2.555199 CAGCATACTTGAGTACCCTGC 58.445 52.381 6.99 6.99 35.43 4.85
2941 3057 2.169352 AGCAGCATACTTGAGTACCCTG 59.831 50.000 12.18 12.18 36.17 4.45
2942 3058 2.472029 AGCAGCATACTTGAGTACCCT 58.528 47.619 0.00 0.00 32.72 4.34
2985 3101 3.776969 GACCATCCATATGATAGGAGGCA 59.223 47.826 3.65 0.00 37.34 4.75
2986 3102 3.135530 GGACCATCCATATGATAGGAGGC 59.864 52.174 3.65 0.00 37.34 4.70
2987 3103 3.713764 GGGACCATCCATATGATAGGAGG 59.286 52.174 3.65 0.00 38.64 4.30
2988 3104 4.163078 GTGGGACCATCCATATGATAGGAG 59.837 50.000 3.65 0.00 38.64 3.69
2989 3105 4.104086 GTGGGACCATCCATATGATAGGA 58.896 47.826 3.65 0.00 38.64 2.94
2990 3106 3.200825 GGTGGGACCATCCATATGATAGG 59.799 52.174 3.65 5.08 38.64 2.57
2991 3107 3.200825 GGGTGGGACCATCCATATGATAG 59.799 52.174 15.77 0.00 46.13 2.08
3012 3128 1.042559 AAACAATGCTATGGGGCGGG 61.043 55.000 0.00 0.00 34.52 6.13
3015 3131 2.378038 TCTGAAACAATGCTATGGGGC 58.622 47.619 0.00 0.00 0.00 5.80
3016 3132 3.181483 GCTTCTGAAACAATGCTATGGGG 60.181 47.826 0.00 0.00 0.00 4.96
3057 3173 1.139989 CGACGCTCAAGAAAGAAGCA 58.860 50.000 0.00 0.00 0.00 3.91
3095 3290 0.387622 ACGTACGTCCACATCAACGG 60.388 55.000 16.72 0.00 42.99 4.44
3148 3343 5.623956 TTTCTTGTCAGGAGAAGTGGTAA 57.376 39.130 6.14 0.00 34.84 2.85
3162 3357 4.742438 TTCTACGTTGCCATTTCTTGTC 57.258 40.909 0.00 0.00 0.00 3.18
3170 3365 3.678056 TCAGTCTTTCTACGTTGCCAT 57.322 42.857 0.00 0.00 0.00 4.40
3194 3594 2.435586 CTGCCTGCCCTTGAGTCG 60.436 66.667 0.00 0.00 0.00 4.18
3239 3646 3.317993 TGCCTTGCATCAATCTCATCATG 59.682 43.478 0.00 0.00 31.71 3.07
3241 3648 2.949644 CTGCCTTGCATCAATCTCATCA 59.050 45.455 0.00 0.00 38.13 3.07
3243 3650 1.681793 GCTGCCTTGCATCAATCTCAT 59.318 47.619 0.00 0.00 38.13 2.90
3252 3659 1.327690 CCTCCATTGCTGCCTTGCAT 61.328 55.000 0.00 0.00 42.96 3.96
3282 3689 0.249398 ACCGTATGTGTGGAAGAGCC 59.751 55.000 0.00 0.00 37.10 4.70
3299 3706 1.204146 TGGAGTTGCCCTGAGATACC 58.796 55.000 0.00 0.00 34.97 2.73
3301 3708 2.027192 GTGTTGGAGTTGCCCTGAGATA 60.027 50.000 0.00 0.00 34.97 1.98
3302 3709 1.067295 TGTTGGAGTTGCCCTGAGAT 58.933 50.000 0.00 0.00 34.97 2.75
3303 3710 0.108585 GTGTTGGAGTTGCCCTGAGA 59.891 55.000 0.00 0.00 34.97 3.27
3304 3711 0.179020 TGTGTTGGAGTTGCCCTGAG 60.179 55.000 0.00 0.00 34.97 3.35
3305 3712 0.179020 CTGTGTTGGAGTTGCCCTGA 60.179 55.000 0.00 0.00 34.97 3.86
3306 3713 1.799258 GCTGTGTTGGAGTTGCCCTG 61.799 60.000 0.00 0.00 34.97 4.45
3307 3714 1.529244 GCTGTGTTGGAGTTGCCCT 60.529 57.895 0.00 0.00 34.97 5.19
3308 3715 2.908073 CGCTGTGTTGGAGTTGCCC 61.908 63.158 0.00 0.00 34.97 5.36
3309 3716 2.117941 GACGCTGTGTTGGAGTTGCC 62.118 60.000 0.00 0.00 37.10 4.52
3310 3717 1.160329 AGACGCTGTGTTGGAGTTGC 61.160 55.000 0.00 0.00 0.00 4.17
3311 3718 0.861837 GAGACGCTGTGTTGGAGTTG 59.138 55.000 0.00 0.00 0.00 3.16
3312 3719 0.597637 CGAGACGCTGTGTTGGAGTT 60.598 55.000 0.00 0.00 0.00 3.01
3313 3720 1.007271 CGAGACGCTGTGTTGGAGT 60.007 57.895 0.00 0.00 0.00 3.85
3314 3721 1.734477 CCGAGACGCTGTGTTGGAG 60.734 63.158 6.34 0.00 32.72 3.86
3315 3722 2.338620 CCGAGACGCTGTGTTGGA 59.661 61.111 6.34 0.00 32.72 3.53
3316 3723 3.414700 GCCGAGACGCTGTGTTGG 61.415 66.667 7.47 7.47 33.95 3.77
3317 3724 2.356313 AGCCGAGACGCTGTGTTG 60.356 61.111 0.00 0.00 37.82 3.33
3331 3738 1.599542 GACAAATATGTCGGCTCAGCC 59.400 52.381 5.22 5.22 45.94 4.85
3341 3748 6.368516 CCAAATGAAAAAGCGGACAAATATGT 59.631 34.615 0.00 0.00 44.25 2.29
3342 3749 6.183360 CCCAAATGAAAAAGCGGACAAATATG 60.183 38.462 0.00 0.00 0.00 1.78
3343 3750 5.874261 CCCAAATGAAAAAGCGGACAAATAT 59.126 36.000 0.00 0.00 0.00 1.28
3344 3751 5.221541 ACCCAAATGAAAAAGCGGACAAATA 60.222 36.000 0.00 0.00 0.00 1.40
3345 3752 4.064388 CCCAAATGAAAAAGCGGACAAAT 58.936 39.130 0.00 0.00 0.00 2.32
3346 3753 3.118592 ACCCAAATGAAAAAGCGGACAAA 60.119 39.130 0.00 0.00 0.00 2.83
3375 3782 3.361977 GGCCACCGTTGAACGCAT 61.362 61.111 12.95 0.00 40.91 4.73
3394 3801 2.297033 ACAAACATGTCACAGAATGGGC 59.703 45.455 0.00 0.00 41.40 5.36
3401 3808 3.123050 TGTCGAGACAAACATGTCACAG 58.877 45.455 11.17 2.76 41.02 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.