Multiple sequence alignment - TraesCS3B01G521700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G521700 chr3B 100.000 3471 0 0 1 3471 764890636 764887166 0.000000e+00 6410.0
1 TraesCS3B01G521700 chr3B 87.194 1554 147 34 845 2362 764807422 764805885 0.000000e+00 1720.0
2 TraesCS3B01G521700 chr3B 82.540 1512 197 38 777 2243 764851489 764850000 0.000000e+00 1267.0
3 TraesCS3B01G521700 chr3B 77.851 912 155 26 1236 2117 764978924 764978030 3.970000e-144 521.0
4 TraesCS3B01G521700 chr3B 75.835 1167 193 49 1236 2341 764793150 764792012 8.590000e-141 510.0
5 TraesCS3B01G521700 chr3B 94.167 240 13 1 3 241 132250794 132251033 7.080000e-97 364.0
6 TraesCS3B01G521700 chr3B 83.708 356 31 13 237 577 764870083 764869740 9.350000e-81 311.0
7 TraesCS3B01G521700 chr3B 89.691 194 14 2 658 845 764815995 764815802 3.460000e-60 243.0
8 TraesCS3B01G521700 chr3B 80.782 307 41 11 2498 2796 47812902 47813198 1.250000e-54 224.0
9 TraesCS3B01G521700 chr3B 100.000 33 0 0 721 753 764851493 764851525 1.040000e-05 62.1
10 TraesCS3B01G521700 chr3D 92.908 1819 103 15 596 2393 574983236 574985049 0.000000e+00 2621.0
11 TraesCS3B01G521700 chr3D 93.140 656 38 4 2385 3035 574985225 574985878 0.000000e+00 955.0
12 TraesCS3B01G521700 chr3D 95.804 286 10 1 236 521 574982611 574982894 8.780000e-126 460.0
13 TraesCS3B01G521700 chr3D 91.579 285 23 1 3036 3320 587940932 587940649 3.250000e-105 392.0
14 TraesCS3B01G521700 chr3D 91.549 284 23 1 3037 3320 511669742 511669460 1.170000e-104 390.0
15 TraesCS3B01G521700 chr3D 100.000 44 0 0 3343 3386 574986467 574986510 7.980000e-12 82.4
16 TraesCS3B01G521700 chrUn 76.571 939 155 38 1217 2128 33303907 33303007 4.080000e-124 455.0
17 TraesCS3B01G521700 chrUn 80.645 310 43 10 2497 2799 112557133 112557432 1.250000e-54 224.0
18 TraesCS3B01G521700 chr3A 76.571 939 155 38 1217 2128 710678739 710677839 4.080000e-124 455.0
19 TraesCS3B01G521700 chr1A 91.958 286 22 1 3036 3321 33216803 33217087 1.940000e-107 399.0
20 TraesCS3B01G521700 chr2D 92.115 279 20 2 3042 3320 24872356 24872080 3.250000e-105 392.0
21 TraesCS3B01G521700 chr2D 90.175 285 27 1 3036 3320 556347668 556347385 1.520000e-98 370.0
22 TraesCS3B01G521700 chr2D 79.856 139 22 6 1241 1376 621461434 621461569 2.850000e-16 97.1
23 TraesCS3B01G521700 chr5D 91.519 283 23 1 3036 3318 556999871 556999590 4.200000e-104 388.0
24 TraesCS3B01G521700 chr5D 83.495 103 17 0 2933 3035 517846687 517846789 2.850000e-16 97.1
25 TraesCS3B01G521700 chr7D 91.166 283 23 2 3036 3318 566318824 566318544 1.950000e-102 383.0
26 TraesCS3B01G521700 chr7D 90.813 283 24 2 3036 3318 584772339 584772619 9.090000e-101 377.0
27 TraesCS3B01G521700 chr2B 89.895 287 28 1 3036 3322 742698447 742698162 5.470000e-98 368.0
28 TraesCS3B01G521700 chr2B 93.776 241 13 2 3 241 543016005 543015765 9.160000e-96 361.0
29 TraesCS3B01G521700 chr2B 93.724 239 14 1 4 241 489844803 489845041 1.180000e-94 357.0
30 TraesCS3B01G521700 chr2B 80.386 311 44 9 2497 2799 66959843 66960144 1.620000e-53 220.0
31 TraesCS3B01G521700 chr2B 98.913 92 0 1 3380 3471 657035907 657035817 2.770000e-36 163.0
32 TraesCS3B01G521700 chr2B 93.396 106 6 1 3366 3471 453238257 453238361 4.640000e-34 156.0
33 TraesCS3B01G521700 chr2B 78.906 128 25 2 1250 1376 762355308 762355434 6.170000e-13 86.1
34 TraesCS3B01G521700 chr1B 90.426 282 23 4 3036 3317 561867440 561867717 5.470000e-98 368.0
35 TraesCS3B01G521700 chr1B 94.393 107 1 4 3365 3471 43596872 43596771 3.590000e-35 159.0
36 TraesCS3B01G521700 chr7B 94.167 240 13 1 3 241 157165084 157164845 7.080000e-97 364.0
37 TraesCS3B01G521700 chr7B 94.118 238 13 1 5 241 339209412 339209649 9.160000e-96 361.0
38 TraesCS3B01G521700 chr7B 93.305 239 16 0 3 241 634367336 634367098 1.530000e-93 353.0
39 TraesCS3B01G521700 chr6B 93.776 241 13 2 7 245 606006464 606006704 9.160000e-96 361.0
40 TraesCS3B01G521700 chr6B 80.831 313 43 11 2497 2802 290187886 290187584 2.690000e-56 230.0
41 TraesCS3B01G521700 chr6B 81.379 290 40 7 2497 2780 535772457 535772738 1.250000e-54 224.0
42 TraesCS3B01G521700 chr6B 100.000 89 0 0 3383 3471 120115524 120115436 7.710000e-37 165.0
43 TraesCS3B01G521700 chr6B 98.913 92 0 1 3380 3471 488530071 488529981 2.770000e-36 163.0
44 TraesCS3B01G521700 chr6B 96.739 92 3 0 3379 3470 170585523 170585432 1.670000e-33 154.0
45 TraesCS3B01G521700 chr6B 86.567 134 18 0 3338 3471 96574738 96574871 7.760000e-32 148.0
46 TraesCS3B01G521700 chr5B 93.388 242 15 1 1 241 516403918 516404159 1.180000e-94 357.0
47 TraesCS3B01G521700 chr5B 93.361 241 14 2 2 241 537777201 537776962 4.260000e-94 355.0
48 TraesCS3B01G521700 chr5B 97.872 94 2 0 3378 3471 466408857 466408950 2.770000e-36 163.0
49 TraesCS3B01G521700 chr5B 98.901 91 1 0 3381 3471 545229759 545229849 2.770000e-36 163.0
50 TraesCS3B01G521700 chr5B 82.524 103 18 0 2933 3035 650551781 650551883 1.330000e-14 91.6
51 TraesCS3B01G521700 chr6D 81.633 294 35 12 2511 2796 226003246 226002964 3.490000e-55 226.0
52 TraesCS3B01G521700 chr7A 80.323 310 44 10 2498 2799 243357059 243356759 5.830000e-53 219.0
53 TraesCS3B01G521700 chr7A 80.456 307 42 10 2498 2796 633395998 633396294 5.830000e-53 219.0
54 TraesCS3B01G521700 chr5A 83.495 103 17 0 2933 3035 645267160 645267262 2.850000e-16 97.1
55 TraesCS3B01G521700 chr2A 88.235 68 8 0 1241 1308 753204112 753204179 7.980000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G521700 chr3B 764887166 764890636 3470 True 6410.0 6410 100.000 1 3471 1 chr3B.!!$R6 3470
1 TraesCS3B01G521700 chr3B 764805885 764807422 1537 True 1720.0 1720 87.194 845 2362 1 chr3B.!!$R2 1517
2 TraesCS3B01G521700 chr3B 764850000 764851489 1489 True 1267.0 1267 82.540 777 2243 1 chr3B.!!$R4 1466
3 TraesCS3B01G521700 chr3B 764978030 764978924 894 True 521.0 521 77.851 1236 2117 1 chr3B.!!$R7 881
4 TraesCS3B01G521700 chr3B 764792012 764793150 1138 True 510.0 510 75.835 1236 2341 1 chr3B.!!$R1 1105
5 TraesCS3B01G521700 chr3D 574982611 574986510 3899 False 1029.6 2621 95.463 236 3386 4 chr3D.!!$F1 3150
6 TraesCS3B01G521700 chrUn 33303007 33303907 900 True 455.0 455 76.571 1217 2128 1 chrUn.!!$R1 911
7 TraesCS3B01G521700 chr3A 710677839 710678739 900 True 455.0 455 76.571 1217 2128 1 chr3A.!!$R1 911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.109532 TCGATGGTCAAAGTTGGGCA 59.890 50.0 0.0 0.0 0.0 5.36 F
1201 1527 0.038526 ACCGTTCTAGCTGTTCCACG 60.039 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1871 0.109086 CTGGTGAGCAGTGGTAGTCG 60.109 60.0 2.99 0.0 0.00 4.18 R
2532 3132 0.038744 ACTTGAACCTGATGGGCTGG 59.961 55.0 0.00 0.0 41.12 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.570135 GTAGTACTACCTCCGTCCTGG 58.430 57.143 20.47 0.00 40.09 4.45
21 22 0.998145 AGTACTACCTCCGTCCTGGT 59.002 55.000 0.00 0.00 39.52 4.00
22 23 1.357079 AGTACTACCTCCGTCCTGGTT 59.643 52.381 0.00 0.00 39.52 3.67
23 24 2.174360 GTACTACCTCCGTCCTGGTTT 58.826 52.381 0.00 0.00 39.52 3.27
24 25 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
25 26 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
26 27 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
27 28 4.613437 ACTACCTCCGTCCTGGTTTATTA 58.387 43.478 0.00 0.00 39.52 0.98
28 29 4.648307 ACTACCTCCGTCCTGGTTTATTAG 59.352 45.833 0.00 0.00 39.52 1.73
29 30 3.447950 ACCTCCGTCCTGGTTTATTAGT 58.552 45.455 0.00 0.00 39.52 2.24
30 31 3.450096 ACCTCCGTCCTGGTTTATTAGTC 59.550 47.826 0.00 0.00 39.52 2.59
31 32 3.705072 CCTCCGTCCTGGTTTATTAGTCT 59.295 47.826 0.00 0.00 39.52 3.24
32 33 4.202131 CCTCCGTCCTGGTTTATTAGTCTC 60.202 50.000 0.00 0.00 39.52 3.36
33 34 4.607239 TCCGTCCTGGTTTATTAGTCTCT 58.393 43.478 0.00 0.00 39.52 3.10
34 35 5.021458 TCCGTCCTGGTTTATTAGTCTCTT 58.979 41.667 0.00 0.00 39.52 2.85
35 36 5.482878 TCCGTCCTGGTTTATTAGTCTCTTT 59.517 40.000 0.00 0.00 39.52 2.52
36 37 6.664816 TCCGTCCTGGTTTATTAGTCTCTTTA 59.335 38.462 0.00 0.00 39.52 1.85
37 38 6.979238 CCGTCCTGGTTTATTAGTCTCTTTAG 59.021 42.308 0.00 0.00 0.00 1.85
38 39 7.363617 CCGTCCTGGTTTATTAGTCTCTTTAGT 60.364 40.741 0.00 0.00 0.00 2.24
39 40 8.680903 CGTCCTGGTTTATTAGTCTCTTTAGTA 58.319 37.037 0.00 0.00 0.00 1.82
129 130 9.653287 ATCTCTCAAAACTATGTTCAAATACGA 57.347 29.630 0.00 0.00 0.00 3.43
130 131 9.483916 TCTCTCAAAACTATGTTCAAATACGAA 57.516 29.630 0.00 0.00 0.00 3.85
133 134 9.490663 CTCAAAACTATGTTCAAATACGAATCC 57.509 33.333 0.00 0.00 0.00 3.01
134 135 9.004717 TCAAAACTATGTTCAAATACGAATCCA 57.995 29.630 0.00 0.00 0.00 3.41
135 136 9.277565 CAAAACTATGTTCAAATACGAATCCAG 57.722 33.333 0.00 0.00 0.00 3.86
136 137 7.553881 AACTATGTTCAAATACGAATCCAGG 57.446 36.000 0.00 0.00 0.00 4.45
137 138 6.055588 ACTATGTTCAAATACGAATCCAGGG 58.944 40.000 0.00 0.00 0.00 4.45
138 139 4.561500 TGTTCAAATACGAATCCAGGGA 57.438 40.909 0.00 0.00 0.00 4.20
139 140 5.110814 TGTTCAAATACGAATCCAGGGAT 57.889 39.130 0.00 0.00 36.23 3.85
140 141 6.241882 TGTTCAAATACGAATCCAGGGATA 57.758 37.500 0.32 0.00 33.97 2.59
141 142 6.837312 TGTTCAAATACGAATCCAGGGATAT 58.163 36.000 0.32 0.00 33.97 1.63
142 143 7.969004 TGTTCAAATACGAATCCAGGGATATA 58.031 34.615 0.32 0.00 33.97 0.86
143 144 8.433599 TGTTCAAATACGAATCCAGGGATATAA 58.566 33.333 0.32 0.00 33.97 0.98
144 145 9.449719 GTTCAAATACGAATCCAGGGATATAAT 57.550 33.333 0.32 0.00 33.97 1.28
148 149 9.807921 AAATACGAATCCAGGGATATAATTTGT 57.192 29.630 0.32 0.00 33.97 2.83
149 150 8.792830 ATACGAATCCAGGGATATAATTTGTG 57.207 34.615 0.32 0.00 33.97 3.33
150 151 5.473504 ACGAATCCAGGGATATAATTTGTGC 59.526 40.000 0.32 0.00 33.97 4.57
151 152 5.707298 CGAATCCAGGGATATAATTTGTGCT 59.293 40.000 0.32 0.00 33.97 4.40
152 153 6.878923 CGAATCCAGGGATATAATTTGTGCTA 59.121 38.462 0.32 0.00 33.97 3.49
153 154 7.390440 CGAATCCAGGGATATAATTTGTGCTAA 59.610 37.037 0.32 0.00 33.97 3.09
154 155 8.409358 AATCCAGGGATATAATTTGTGCTAAC 57.591 34.615 0.32 0.00 33.97 2.34
155 156 6.905736 TCCAGGGATATAATTTGTGCTAACA 58.094 36.000 0.00 0.00 0.00 2.41
156 157 7.526041 TCCAGGGATATAATTTGTGCTAACAT 58.474 34.615 0.00 0.00 35.83 2.71
157 158 7.448161 TCCAGGGATATAATTTGTGCTAACATG 59.552 37.037 0.00 0.00 35.83 3.21
158 159 7.231317 CCAGGGATATAATTTGTGCTAACATGT 59.769 37.037 0.00 0.00 35.83 3.21
159 160 9.283768 CAGGGATATAATTTGTGCTAACATGTA 57.716 33.333 0.00 0.00 35.83 2.29
189 190 9.878667 TTATTTACTAAGTCAAATCGATGGTCA 57.121 29.630 0.00 0.00 0.00 4.02
190 191 8.786826 ATTTACTAAGTCAAATCGATGGTCAA 57.213 30.769 0.00 0.00 0.00 3.18
191 192 8.610248 TTTACTAAGTCAAATCGATGGTCAAA 57.390 30.769 0.00 0.00 0.00 2.69
192 193 6.727824 ACTAAGTCAAATCGATGGTCAAAG 57.272 37.500 0.00 0.00 0.00 2.77
193 194 6.231211 ACTAAGTCAAATCGATGGTCAAAGT 58.769 36.000 0.00 0.00 0.00 2.66
194 195 6.710744 ACTAAGTCAAATCGATGGTCAAAGTT 59.289 34.615 0.00 0.00 0.00 2.66
195 196 5.362556 AGTCAAATCGATGGTCAAAGTTG 57.637 39.130 0.00 0.00 0.00 3.16
196 197 4.216257 AGTCAAATCGATGGTCAAAGTTGG 59.784 41.667 0.00 0.00 0.00 3.77
197 198 3.505680 TCAAATCGATGGTCAAAGTTGGG 59.494 43.478 0.00 0.00 0.00 4.12
198 199 1.463674 ATCGATGGTCAAAGTTGGGC 58.536 50.000 0.00 0.00 0.00 5.36
199 200 0.109532 TCGATGGTCAAAGTTGGGCA 59.890 50.000 0.00 0.00 0.00 5.36
200 201 0.240945 CGATGGTCAAAGTTGGGCAC 59.759 55.000 0.00 0.00 0.00 5.01
201 202 1.327303 GATGGTCAAAGTTGGGCACA 58.673 50.000 0.00 0.00 0.00 4.57
202 203 1.686052 GATGGTCAAAGTTGGGCACAA 59.314 47.619 0.00 0.00 0.00 3.33
203 204 1.561643 TGGTCAAAGTTGGGCACAAA 58.438 45.000 1.02 0.00 38.54 2.83
204 205 1.902508 TGGTCAAAGTTGGGCACAAAA 59.097 42.857 1.02 0.00 38.54 2.44
205 206 2.503356 TGGTCAAAGTTGGGCACAAAAT 59.497 40.909 1.02 0.00 38.54 1.82
206 207 3.706594 TGGTCAAAGTTGGGCACAAAATA 59.293 39.130 1.02 0.00 38.54 1.40
207 208 4.055360 GGTCAAAGTTGGGCACAAAATAC 58.945 43.478 1.02 0.00 38.54 1.89
208 209 4.202212 GGTCAAAGTTGGGCACAAAATACT 60.202 41.667 1.02 0.00 38.54 2.12
209 210 5.010213 GGTCAAAGTTGGGCACAAAATACTA 59.990 40.000 1.02 0.00 38.54 1.82
210 211 6.295067 GGTCAAAGTTGGGCACAAAATACTAT 60.295 38.462 1.02 0.00 38.54 2.12
211 212 6.586082 GTCAAAGTTGGGCACAAAATACTATG 59.414 38.462 1.02 0.00 38.54 2.23
212 213 5.659440 AAGTTGGGCACAAAATACTATGG 57.341 39.130 1.02 0.00 38.54 2.74
213 214 4.023291 AGTTGGGCACAAAATACTATGGG 58.977 43.478 1.02 0.00 38.54 4.00
214 215 3.025322 TGGGCACAAAATACTATGGGG 57.975 47.619 0.00 0.00 0.00 4.96
215 216 2.583101 TGGGCACAAAATACTATGGGGA 59.417 45.455 0.00 0.00 0.00 4.81
216 217 2.956333 GGGCACAAAATACTATGGGGAC 59.044 50.000 0.00 0.00 0.00 4.46
231 232 1.746470 GGGACCAATAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
232 233 1.680860 GGGACCAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
233 234 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
234 235 2.629051 GACCAATAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
267 268 4.273480 GTCATTGATACGGAAGGACAATGG 59.727 45.833 1.30 0.00 43.19 3.16
293 294 6.357367 GGATAGGAAAGACCACATATGTTGT 58.643 40.000 12.11 12.11 42.04 3.32
306 307 7.147880 ACCACATATGTTGTCCTAGAAGAGTAC 60.148 40.741 5.37 0.00 36.00 2.73
371 372 9.126151 TCGATGACAATAAATAAATAGGGCAAA 57.874 29.630 0.00 0.00 0.00 3.68
482 483 1.002069 AAGGATGCCCTCAATCCACA 58.998 50.000 5.32 0.00 43.48 4.17
521 522 3.454812 GGTCACTGGGGTGTCTACATTAT 59.545 47.826 0.00 0.00 43.41 1.28
522 523 4.080526 GGTCACTGGGGTGTCTACATTATT 60.081 45.833 0.00 0.00 43.41 1.40
523 524 4.876107 GTCACTGGGGTGTCTACATTATTG 59.124 45.833 0.00 0.00 43.41 1.90
524 525 4.534500 TCACTGGGGTGTCTACATTATTGT 59.466 41.667 0.00 0.00 43.41 2.71
525 526 5.013704 TCACTGGGGTGTCTACATTATTGTT 59.986 40.000 0.00 0.00 43.41 2.83
526 527 5.123820 CACTGGGGTGTCTACATTATTGTTG 59.876 44.000 0.00 0.00 38.54 3.33
527 528 4.013728 TGGGGTGTCTACATTATTGTTGC 58.986 43.478 0.00 0.00 37.28 4.17
528 529 4.013728 GGGGTGTCTACATTATTGTTGCA 58.986 43.478 0.00 0.00 37.28 4.08
529 530 4.644685 GGGGTGTCTACATTATTGTTGCAT 59.355 41.667 0.00 0.00 37.28 3.96
530 531 5.825679 GGGGTGTCTACATTATTGTTGCATA 59.174 40.000 0.00 0.00 37.28 3.14
531 532 6.017109 GGGGTGTCTACATTATTGTTGCATAG 60.017 42.308 0.00 0.00 37.28 2.23
532 533 6.430451 GGTGTCTACATTATTGTTGCATAGC 58.570 40.000 0.00 0.00 37.28 2.97
533 534 6.038161 GGTGTCTACATTATTGTTGCATAGCA 59.962 38.462 0.00 0.00 37.28 3.49
534 535 7.128331 GTGTCTACATTATTGTTGCATAGCAG 58.872 38.462 0.00 0.00 40.61 4.24
535 536 6.138761 GTCTACATTATTGTTGCATAGCAGC 58.861 40.000 0.00 0.00 40.61 5.25
539 540 3.594568 TGTTGCATAGCAGCAGCC 58.405 55.556 4.40 1.89 44.16 4.85
540 541 1.001764 TGTTGCATAGCAGCAGCCT 60.002 52.632 4.40 0.00 44.16 4.58
541 542 1.028330 TGTTGCATAGCAGCAGCCTC 61.028 55.000 4.40 0.00 44.16 4.70
542 543 1.452651 TTGCATAGCAGCAGCCTCC 60.453 57.895 0.00 0.00 46.54 4.30
543 544 2.594013 GCATAGCAGCAGCCTCCC 60.594 66.667 0.00 0.00 43.56 4.30
544 545 2.112718 CATAGCAGCAGCCTCCCC 59.887 66.667 0.00 0.00 43.56 4.81
545 546 2.040043 ATAGCAGCAGCCTCCCCT 60.040 61.111 0.00 0.00 43.56 4.79
546 547 1.695597 ATAGCAGCAGCCTCCCCTT 60.696 57.895 0.00 0.00 43.56 3.95
547 548 0.400525 ATAGCAGCAGCCTCCCCTTA 60.401 55.000 0.00 0.00 43.56 2.69
564 565 6.472887 TCCCCTTAACAAAGTGATCTAACTG 58.527 40.000 0.00 0.00 0.00 3.16
596 597 8.745837 GGTTATCAATCTTCAAAATGTAATGCG 58.254 33.333 0.00 0.00 0.00 4.73
597 598 9.289303 GTTATCAATCTTCAAAATGTAATGCGT 57.711 29.630 0.00 0.00 0.00 5.24
600 601 8.262715 TCAATCTTCAAAATGTAATGCGTAGA 57.737 30.769 0.00 0.00 0.00 2.59
601 602 8.726068 TCAATCTTCAAAATGTAATGCGTAGAA 58.274 29.630 0.00 0.00 0.00 2.10
602 603 9.507280 CAATCTTCAAAATGTAATGCGTAGAAT 57.493 29.630 0.00 0.00 0.00 2.40
616 910 7.584122 ATGCGTAGAATAAGTCTCCTTTCTA 57.416 36.000 0.00 0.00 37.84 2.10
706 1004 8.367943 ACACTTATTTACAACACGTTGACATA 57.632 30.769 16.48 6.63 42.93 2.29
709 1007 8.995220 ACTTATTTACAACACGTTGACATACAT 58.005 29.630 16.48 1.07 42.93 2.29
752 1050 5.089970 TGTTTAGTCACCCATCTCTCATG 57.910 43.478 0.00 0.00 0.00 3.07
753 1051 3.827008 TTAGTCACCCATCTCTCATGC 57.173 47.619 0.00 0.00 0.00 4.06
761 1059 1.880675 CCATCTCTCATGCTTCCATGC 59.119 52.381 0.00 0.00 46.69 4.06
782 1080 1.781429 GTACGTGACAGCATCATAGCG 59.219 52.381 0.00 0.00 40.28 4.26
793 1091 3.319405 AGCATCATAGCGCTGTACTACTT 59.681 43.478 22.90 0.00 37.02 2.24
871 1171 0.687920 TCGGTTGGTGGCAGTCAATA 59.312 50.000 6.50 0.00 0.00 1.90
903 1203 3.186613 GTGTTCCGTCTCCATGACTTTTC 59.813 47.826 0.00 0.00 43.25 2.29
909 1209 3.815401 CGTCTCCATGACTTTTCTTTGGT 59.185 43.478 0.00 0.00 43.25 3.67
915 1220 4.858692 CCATGACTTTTCTTTGGTTATGCG 59.141 41.667 0.00 0.00 0.00 4.73
967 1275 2.280797 GCCTGAACCAGCACACGA 60.281 61.111 0.00 0.00 0.00 4.35
1008 1326 7.421087 ACTAGTACTCCAAAGGATAAGAACC 57.579 40.000 0.00 0.00 0.00 3.62
1009 1327 5.340439 AGTACTCCAAAGGATAAGAACCG 57.660 43.478 0.00 0.00 0.00 4.44
1107 1429 2.813061 ACATTTGTTGTTGCTGACTGC 58.187 42.857 0.00 0.00 43.25 4.40
1201 1527 0.038526 ACCGTTCTAGCTGTTCCACG 60.039 55.000 0.00 0.00 0.00 4.94
1239 1565 6.550843 TGATCATACCTGCGTTTTTGTAATG 58.449 36.000 0.00 0.00 0.00 1.90
1405 1750 4.207955 ACTCAGGTCATCGCTACTGATTA 58.792 43.478 0.00 0.00 39.06 1.75
1419 1767 5.760253 GCTACTGATTAGCCAGCTTAAATCA 59.240 40.000 14.18 14.18 46.85 2.57
1433 1783 7.013942 CCAGCTTAAATCAATTCTCATCCATCA 59.986 37.037 0.00 0.00 0.00 3.07
1435 1785 8.411683 AGCTTAAATCAATTCTCATCCATCAAC 58.588 33.333 0.00 0.00 0.00 3.18
1498 1853 4.141937 CCCTACATCCACTTGATCTTCGAA 60.142 45.833 0.00 0.00 0.00 3.71
1547 1902 4.278513 CACCAGTGCCCCCGGAAA 62.279 66.667 0.73 0.00 0.00 3.13
1630 1990 4.379813 CCGGTCCAAGAAATTTGTCTGATG 60.380 45.833 0.00 0.00 0.00 3.07
1662 2037 1.869767 CGCAGAAGTTCTTCTTGCAGT 59.130 47.619 22.82 2.63 36.40 4.40
1742 2117 0.186386 AGTGCTACCTAGAGGCCGAT 59.814 55.000 0.00 0.00 39.32 4.18
2167 2582 8.528643 TGAGATATATTGTTACCATAAGGACCG 58.471 37.037 0.00 0.00 38.69 4.79
2169 2584 3.637911 ATTGTTACCATAAGGACCGCA 57.362 42.857 0.00 0.00 38.69 5.69
2183 2598 3.964875 CGCAGCAACGGCCACTTT 61.965 61.111 2.24 0.00 42.56 2.66
2207 2622 2.665649 TAATGCCGAGTTGTCATCGT 57.334 45.000 0.00 0.00 38.50 3.73
2234 2649 2.076863 GTTCTCACAATCGTCCCCAAG 58.923 52.381 0.00 0.00 0.00 3.61
2268 2683 8.194104 TGTTGTTAAGTGCACAATGAAAGTTAT 58.806 29.630 21.04 0.00 36.54 1.89
2311 2726 1.327303 TGGGATTGCTTGCTTTTCGT 58.673 45.000 0.00 0.00 0.00 3.85
2334 2749 1.875514 CGGATGTCACCAGCATATTGG 59.124 52.381 0.00 0.00 44.09 3.16
2339 2754 2.300433 GTCACCAGCATATTGGCATCA 58.700 47.619 0.00 0.00 42.18 3.07
2393 2808 5.237127 TCATGCATCGAGGCTTAATTTGTAG 59.763 40.000 23.78 2.69 34.04 2.74
2394 2809 3.876914 TGCATCGAGGCTTAATTTGTAGG 59.123 43.478 23.78 0.00 34.04 3.18
2413 3012 2.106511 AGGTGGTCCCATACATGTATGC 59.893 50.000 31.96 21.58 41.10 3.14
2415 3014 2.878406 GTGGTCCCATACATGTATGCAC 59.122 50.000 31.96 28.22 41.10 4.57
2421 3020 3.248363 CCCATACATGTATGCACTGTTCG 59.752 47.826 31.96 19.10 41.10 3.95
2491 3091 0.899717 GCCCCAACTCATCTTTGCCA 60.900 55.000 0.00 0.00 0.00 4.92
2494 3094 1.542915 CCCAACTCATCTTTGCCACTG 59.457 52.381 0.00 0.00 0.00 3.66
2501 3101 1.538687 ATCTTTGCCACTGCCCAAGC 61.539 55.000 0.00 0.00 40.48 4.01
2513 3113 3.895025 CCAAGCTGTGGTCGGATG 58.105 61.111 6.74 0.00 43.20 3.51
2523 3123 1.485066 GTGGTCGGATGGTTAGGACAT 59.515 52.381 0.00 0.00 0.00 3.06
2532 3132 6.433404 TCGGATGGTTAGGACATTAGTATCTC 59.567 42.308 0.00 0.00 0.00 2.75
2533 3133 6.350277 CGGATGGTTAGGACATTAGTATCTCC 60.350 46.154 0.00 0.00 0.00 3.71
2534 3134 6.497259 GGATGGTTAGGACATTAGTATCTCCA 59.503 42.308 0.00 0.00 0.00 3.86
2546 3146 1.771255 GTATCTCCAGCCCATCAGGTT 59.229 52.381 0.00 0.00 38.26 3.50
2622 3222 4.882671 TGCTTTTTCAGTGTGAGAAGAC 57.117 40.909 0.00 0.00 0.00 3.01
2627 3227 5.464965 TTTTCAGTGTGAGAAGACGTTTC 57.535 39.130 0.00 0.00 0.00 2.78
2629 3229 2.429250 TCAGTGTGAGAAGACGTTTCCA 59.571 45.455 0.00 0.00 0.00 3.53
2634 3234 2.662156 GTGAGAAGACGTTTCCATCGAC 59.338 50.000 0.00 0.00 0.00 4.20
2636 3236 3.754850 TGAGAAGACGTTTCCATCGACTA 59.245 43.478 0.00 0.00 33.77 2.59
2648 3248 1.478510 CATCGACTACAAGGTGCCTCT 59.521 52.381 0.00 0.00 0.00 3.69
2658 3258 0.472734 AGGTGCCTCTGGTGACTTCT 60.473 55.000 0.00 0.00 0.00 2.85
2688 3288 8.763049 TCTTAAGATAATATGTTGATCGGCTG 57.237 34.615 0.00 0.00 0.00 4.85
2723 3323 1.069358 GCTCATAGAGGTAGGGTGTGC 59.931 57.143 0.00 0.00 0.00 4.57
2743 3343 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
2848 3452 4.427312 CCTCCAGTATTTGCATCAAAAGC 58.573 43.478 0.00 0.00 36.90 3.51
2862 3466 5.163893 GCATCAAAAGCTGACCATGAATTTG 60.164 40.000 0.00 0.00 36.69 2.32
2957 3561 5.553123 ACACCCATCGTTCTAAAATGTACA 58.447 37.500 0.00 0.00 0.00 2.90
3054 3658 8.716646 ACAGTATCATGATGAAATACGTTGAA 57.283 30.769 18.72 0.00 32.39 2.69
3055 3659 9.161629 ACAGTATCATGATGAAATACGTTGAAA 57.838 29.630 18.72 0.00 32.39 2.69
3058 3662 7.919313 ATCATGATGAAATACGTTGAAATGC 57.081 32.000 7.59 0.00 0.00 3.56
3059 3663 5.964751 TCATGATGAAATACGTTGAAATGCG 59.035 36.000 0.00 0.00 0.00 4.73
3060 3664 5.538067 TGATGAAATACGTTGAAATGCGA 57.462 34.783 0.00 0.00 0.00 5.10
3061 3665 5.320723 TGATGAAATACGTTGAAATGCGAC 58.679 37.500 0.00 0.00 0.00 5.19
3062 3666 4.073169 TGAAATACGTTGAAATGCGACC 57.927 40.909 0.00 0.00 0.00 4.79
3063 3667 3.749088 TGAAATACGTTGAAATGCGACCT 59.251 39.130 0.00 0.00 0.00 3.85
3064 3668 3.740044 AATACGTTGAAATGCGACCTG 57.260 42.857 0.00 0.00 0.00 4.00
3065 3669 2.157834 TACGTTGAAATGCGACCTGT 57.842 45.000 0.00 0.00 0.00 4.00
3066 3670 0.586319 ACGTTGAAATGCGACCTGTG 59.414 50.000 0.00 0.00 0.00 3.66
3067 3671 0.586319 CGTTGAAATGCGACCTGTGT 59.414 50.000 0.00 0.00 0.00 3.72
3068 3672 1.660052 CGTTGAAATGCGACCTGTGTG 60.660 52.381 0.00 0.00 0.00 3.82
3071 3675 2.293170 TGAAATGCGACCTGTGTGAAA 58.707 42.857 0.00 0.00 0.00 2.69
3072 3676 2.685388 TGAAATGCGACCTGTGTGAAAA 59.315 40.909 0.00 0.00 0.00 2.29
3073 3677 3.129462 TGAAATGCGACCTGTGTGAAAAA 59.871 39.130 0.00 0.00 0.00 1.94
3095 3802 4.796038 AGACAAATTCATGGCTTGGAAG 57.204 40.909 0.09 0.00 33.97 3.46
3096 3803 3.512724 AGACAAATTCATGGCTTGGAAGG 59.487 43.478 0.09 0.00 33.97 3.46
3097 3804 3.509442 ACAAATTCATGGCTTGGAAGGA 58.491 40.909 0.09 0.00 0.00 3.36
3098 3805 4.098894 ACAAATTCATGGCTTGGAAGGAT 58.901 39.130 0.09 0.00 0.00 3.24
3099 3806 4.081309 ACAAATTCATGGCTTGGAAGGATG 60.081 41.667 0.09 0.00 0.00 3.51
3100 3807 3.675348 ATTCATGGCTTGGAAGGATGA 57.325 42.857 0.09 0.00 0.00 2.92
3101 3808 3.454719 TTCATGGCTTGGAAGGATGAA 57.545 42.857 0.09 0.00 32.06 2.57
3102 3809 3.675348 TCATGGCTTGGAAGGATGAAT 57.325 42.857 0.09 0.00 0.00 2.57
3104 3811 4.722220 TCATGGCTTGGAAGGATGAATAG 58.278 43.478 0.09 0.00 0.00 1.73
3105 3812 4.166725 TCATGGCTTGGAAGGATGAATAGT 59.833 41.667 0.09 0.00 0.00 2.12
3106 3813 5.369404 TCATGGCTTGGAAGGATGAATAGTA 59.631 40.000 0.09 0.00 0.00 1.82
3107 3814 5.912149 TGGCTTGGAAGGATGAATAGTAT 57.088 39.130 0.00 0.00 0.00 2.12
3110 3817 6.044754 TGGCTTGGAAGGATGAATAGTATCAT 59.955 38.462 0.00 0.00 42.62 2.45
3114 3821 7.379059 TGGAAGGATGAATAGTATCATGTGT 57.621 36.000 0.00 0.00 40.08 3.72
3116 3823 8.933653 TGGAAGGATGAATAGTATCATGTGTTA 58.066 33.333 0.00 0.00 40.08 2.41
3117 3824 9.778741 GGAAGGATGAATAGTATCATGTGTTAA 57.221 33.333 0.00 0.00 40.08 2.01
3124 3831 9.502091 TGAATAGTATCATGTGTTAAATAGCCC 57.498 33.333 0.00 0.00 0.00 5.19
3126 3833 5.305585 AGTATCATGTGTTAAATAGCCCCG 58.694 41.667 0.00 0.00 0.00 5.73
3129 3836 0.993470 TGTGTTAAATAGCCCCGGGT 59.007 50.000 21.85 3.79 0.00 5.28
3134 4119 2.423446 TAAATAGCCCCGGGTTTGTC 57.577 50.000 21.85 2.65 0.00 3.18
3142 4127 0.313987 CCCGGGTTTGTCTTTCTTGC 59.686 55.000 14.18 0.00 0.00 4.01
3146 4131 2.159310 CGGGTTTGTCTTTCTTGCACAA 60.159 45.455 0.00 0.00 0.00 3.33
3148 4133 3.186909 GGTTTGTCTTTCTTGCACAACC 58.813 45.455 0.00 0.00 29.74 3.77
3151 4136 2.297701 TGTCTTTCTTGCACAACCCTC 58.702 47.619 0.00 0.00 0.00 4.30
3152 4137 2.297701 GTCTTTCTTGCACAACCCTCA 58.702 47.619 0.00 0.00 0.00 3.86
3153 4138 2.887152 GTCTTTCTTGCACAACCCTCAT 59.113 45.455 0.00 0.00 0.00 2.90
3154 4139 3.319122 GTCTTTCTTGCACAACCCTCATT 59.681 43.478 0.00 0.00 0.00 2.57
3156 4141 4.037923 TCTTTCTTGCACAACCCTCATTTC 59.962 41.667 0.00 0.00 0.00 2.17
3157 4142 2.942804 TCTTGCACAACCCTCATTTCA 58.057 42.857 0.00 0.00 0.00 2.69
3159 4144 3.068024 TCTTGCACAACCCTCATTTCAAC 59.932 43.478 0.00 0.00 0.00 3.18
3164 4149 4.320935 GCACAACCCTCATTTCAACGTATT 60.321 41.667 0.00 0.00 0.00 1.89
3165 4150 5.768317 CACAACCCTCATTTCAACGTATTT 58.232 37.500 0.00 0.00 0.00 1.40
3166 4151 6.212955 CACAACCCTCATTTCAACGTATTTT 58.787 36.000 0.00 0.00 0.00 1.82
3167 4152 6.143758 CACAACCCTCATTTCAACGTATTTTG 59.856 38.462 0.00 0.00 0.00 2.44
3169 4154 4.173256 CCCTCATTTCAACGTATTTTGCC 58.827 43.478 0.00 0.00 0.00 4.52
3170 4155 4.173256 CCTCATTTCAACGTATTTTGCCC 58.827 43.478 0.00 0.00 0.00 5.36
3172 4157 4.804108 TCATTTCAACGTATTTTGCCCTG 58.196 39.130 0.00 0.00 0.00 4.45
3173 4158 4.520874 TCATTTCAACGTATTTTGCCCTGA 59.479 37.500 0.00 0.00 0.00 3.86
3180 4165 7.434492 TCAACGTATTTTGCCCTGAAAATTTA 58.566 30.769 0.00 0.00 36.94 1.40
3181 4166 7.382759 TCAACGTATTTTGCCCTGAAAATTTAC 59.617 33.333 0.00 0.00 36.94 2.01
3182 4167 6.750148 ACGTATTTTGCCCTGAAAATTTACA 58.250 32.000 0.00 0.00 36.94 2.41
3183 4168 6.643360 ACGTATTTTGCCCTGAAAATTTACAC 59.357 34.615 0.00 0.00 36.94 2.90
3188 4173 8.545229 TTTTGCCCTGAAAATTTACACATATG 57.455 30.769 0.00 0.00 0.00 1.78
3189 4174 6.849085 TGCCCTGAAAATTTACACATATGT 57.151 33.333 1.41 1.41 43.30 2.29
3207 4192 9.218440 CACATATGTGTATTATGCCTTCATGTA 57.782 33.333 24.91 0.00 40.96 2.29
3208 4193 9.964354 ACATATGTGTATTATGCCTTCATGTAT 57.036 29.630 7.78 0.00 36.63 2.29
3213 4198 9.657419 TGTGTATTATGCCTTCATGTATATCTG 57.343 33.333 0.00 0.00 34.22 2.90
3214 4199 9.658799 GTGTATTATGCCTTCATGTATATCTGT 57.341 33.333 0.00 0.00 34.22 3.41
3286 4271 7.677454 AATTTGAATTTTGAATCTGAAGGCC 57.323 32.000 0.00 0.00 0.00 5.19
3287 4272 6.423776 TTTGAATTTTGAATCTGAAGGCCT 57.576 33.333 0.00 0.00 0.00 5.19
3288 4273 5.649782 TGAATTTTGAATCTGAAGGCCTC 57.350 39.130 5.23 0.00 0.00 4.70
3289 4274 4.463891 TGAATTTTGAATCTGAAGGCCTCC 59.536 41.667 5.23 0.00 0.00 4.30
3290 4275 3.524095 TTTTGAATCTGAAGGCCTCCA 57.476 42.857 5.23 0.00 0.00 3.86
3291 4276 2.795231 TTGAATCTGAAGGCCTCCAG 57.205 50.000 13.90 13.90 0.00 3.86
3292 4277 1.661463 TGAATCTGAAGGCCTCCAGT 58.339 50.000 19.66 0.00 0.00 4.00
3293 4278 1.280133 TGAATCTGAAGGCCTCCAGTG 59.720 52.381 19.66 0.00 0.00 3.66
3294 4279 1.556911 GAATCTGAAGGCCTCCAGTGA 59.443 52.381 19.66 0.25 0.00 3.41
3295 4280 1.202330 ATCTGAAGGCCTCCAGTGAG 58.798 55.000 19.66 0.00 38.42 3.51
3296 4281 1.078567 CTGAAGGCCTCCAGTGAGC 60.079 63.158 11.59 0.00 37.29 4.26
3297 4282 1.537397 TGAAGGCCTCCAGTGAGCT 60.537 57.895 5.23 0.00 37.29 4.09
3298 4283 1.220477 GAAGGCCTCCAGTGAGCTC 59.780 63.158 5.23 6.82 37.29 4.09
3299 4284 2.570582 GAAGGCCTCCAGTGAGCTCG 62.571 65.000 5.23 0.00 37.29 5.03
3300 4285 4.154347 GGCCTCCAGTGAGCTCGG 62.154 72.222 9.64 4.39 37.29 4.63
3301 4286 3.386237 GCCTCCAGTGAGCTCGGT 61.386 66.667 9.64 0.00 37.29 4.69
3302 4287 2.888863 CCTCCAGTGAGCTCGGTC 59.111 66.667 9.64 2.22 37.29 4.79
3303 4288 1.979155 CCTCCAGTGAGCTCGGTCA 60.979 63.158 9.64 0.00 37.29 4.02
3304 4289 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
3305 4290 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
3306 4291 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
3307 4292 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
3308 4293 0.249868 CAGTGAGCTCGGTCACCAAA 60.250 55.000 21.54 0.00 46.94 3.28
3309 4294 0.034059 AGTGAGCTCGGTCACCAAAG 59.966 55.000 21.54 0.00 46.94 2.77
3310 4295 0.249911 GTGAGCTCGGTCACCAAAGT 60.250 55.000 16.18 0.00 40.96 2.66
3311 4296 0.033504 TGAGCTCGGTCACCAAAGTC 59.966 55.000 9.64 0.00 0.00 3.01
3312 4297 0.033504 GAGCTCGGTCACCAAAGTCA 59.966 55.000 0.00 0.00 0.00 3.41
3313 4298 0.034059 AGCTCGGTCACCAAAGTCAG 59.966 55.000 0.00 0.00 0.00 3.51
3314 4299 0.249911 GCTCGGTCACCAAAGTCAGT 60.250 55.000 0.00 0.00 0.00 3.41
3315 4300 1.810412 GCTCGGTCACCAAAGTCAGTT 60.810 52.381 0.00 0.00 0.00 3.16
3316 4301 2.561569 CTCGGTCACCAAAGTCAGTTT 58.438 47.619 0.00 0.00 0.00 2.66
3317 4302 2.544267 CTCGGTCACCAAAGTCAGTTTC 59.456 50.000 0.00 0.00 0.00 2.78
3318 4303 1.602377 CGGTCACCAAAGTCAGTTTCC 59.398 52.381 0.00 0.00 0.00 3.13
3319 4304 1.602377 GGTCACCAAAGTCAGTTTCCG 59.398 52.381 0.00 0.00 0.00 4.30
3320 4305 1.602377 GTCACCAAAGTCAGTTTCCGG 59.398 52.381 0.00 0.00 0.00 5.14
3321 4306 0.951558 CACCAAAGTCAGTTTCCGGG 59.048 55.000 0.00 0.00 0.00 5.73
3322 4307 0.822121 ACCAAAGTCAGTTTCCGGGC 60.822 55.000 0.00 0.00 0.00 6.13
3323 4308 1.574428 CAAAGTCAGTTTCCGGGCG 59.426 57.895 0.00 0.00 0.00 6.13
3324 4309 0.882927 CAAAGTCAGTTTCCGGGCGA 60.883 55.000 0.00 0.00 0.00 5.54
3325 4310 0.179040 AAAGTCAGTTTCCGGGCGAA 60.179 50.000 0.00 0.00 0.00 4.70
3326 4311 0.179040 AAGTCAGTTTCCGGGCGAAA 60.179 50.000 0.00 0.00 38.16 3.46
3327 4312 0.602905 AGTCAGTTTCCGGGCGAAAG 60.603 55.000 0.00 0.00 41.17 2.62
3328 4313 0.883370 GTCAGTTTCCGGGCGAAAGT 60.883 55.000 0.00 0.00 43.59 2.66
3329 4314 0.601841 TCAGTTTCCGGGCGAAAGTC 60.602 55.000 0.00 0.00 41.34 3.01
3330 4315 0.602905 CAGTTTCCGGGCGAAAGTCT 60.603 55.000 0.00 0.00 41.34 3.24
3331 4316 0.971386 AGTTTCCGGGCGAAAGTCTA 59.029 50.000 0.00 0.00 39.49 2.59
3332 4317 1.073964 GTTTCCGGGCGAAAGTCTAC 58.926 55.000 0.00 0.00 41.17 2.59
3333 4318 0.971386 TTTCCGGGCGAAAGTCTACT 59.029 50.000 0.00 0.00 35.49 2.57
3334 4319 0.971386 TTCCGGGCGAAAGTCTACTT 59.029 50.000 0.00 0.00 37.91 2.24
3335 4320 0.529378 TCCGGGCGAAAGTCTACTTC 59.471 55.000 0.00 0.00 34.61 3.01
3336 4321 0.801067 CCGGGCGAAAGTCTACTTCG 60.801 60.000 0.00 2.86 34.61 3.79
3337 4322 0.109412 CGGGCGAAAGTCTACTTCGT 60.109 55.000 8.15 0.00 34.61 3.85
3338 4323 1.668047 CGGGCGAAAGTCTACTTCGTT 60.668 52.381 8.15 0.00 34.61 3.85
3339 4324 1.725164 GGGCGAAAGTCTACTTCGTTG 59.275 52.381 8.15 0.00 34.61 4.10
3340 4325 2.401351 GGCGAAAGTCTACTTCGTTGT 58.599 47.619 8.15 0.00 34.61 3.32
3341 4326 2.407696 GGCGAAAGTCTACTTCGTTGTC 59.592 50.000 8.15 1.08 34.61 3.18
3386 4371 6.540189 ACTTCAATACATGTCCAGCTCATAAC 59.460 38.462 0.00 0.00 0.00 1.89
3387 4372 5.988287 TCAATACATGTCCAGCTCATAACA 58.012 37.500 0.00 0.00 0.00 2.41
3388 4373 5.817296 TCAATACATGTCCAGCTCATAACAC 59.183 40.000 0.00 0.00 0.00 3.32
3389 4374 3.988976 ACATGTCCAGCTCATAACACT 57.011 42.857 0.00 0.00 0.00 3.55
3390 4375 6.731292 ATACATGTCCAGCTCATAACACTA 57.269 37.500 0.00 0.00 0.00 2.74
3391 4376 5.016051 ACATGTCCAGCTCATAACACTAG 57.984 43.478 0.00 0.00 0.00 2.57
3392 4377 4.467795 ACATGTCCAGCTCATAACACTAGT 59.532 41.667 0.00 0.00 0.00 2.57
3393 4378 4.456280 TGTCCAGCTCATAACACTAGTG 57.544 45.455 21.44 21.44 0.00 2.74
3394 4379 3.190874 GTCCAGCTCATAACACTAGTGC 58.809 50.000 22.90 6.89 0.00 4.40
3395 4380 2.831526 TCCAGCTCATAACACTAGTGCA 59.168 45.455 22.90 11.37 0.00 4.57
3396 4381 3.118992 TCCAGCTCATAACACTAGTGCAG 60.119 47.826 22.90 11.49 0.00 4.41
3397 4382 3.118992 CCAGCTCATAACACTAGTGCAGA 60.119 47.826 22.90 13.56 0.00 4.26
3398 4383 4.498241 CAGCTCATAACACTAGTGCAGAA 58.502 43.478 22.90 6.17 0.00 3.02
3399 4384 4.328440 CAGCTCATAACACTAGTGCAGAAC 59.672 45.833 22.90 10.47 0.00 3.01
3400 4385 3.619038 GCTCATAACACTAGTGCAGAACC 59.381 47.826 22.90 2.76 0.00 3.62
3401 4386 3.845178 TCATAACACTAGTGCAGAACCG 58.155 45.455 22.90 5.45 0.00 4.44
3402 4387 2.736144 TAACACTAGTGCAGAACCGG 57.264 50.000 22.90 0.00 0.00 5.28
3403 4388 0.034896 AACACTAGTGCAGAACCGGG 59.965 55.000 22.90 0.00 0.00 5.73
3404 4389 1.741770 CACTAGTGCAGAACCGGGC 60.742 63.158 10.54 0.00 0.00 6.13
3405 4390 2.214216 ACTAGTGCAGAACCGGGCA 61.214 57.895 6.32 1.81 37.77 5.36
3406 4391 1.003839 CTAGTGCAGAACCGGGCAA 60.004 57.895 6.32 0.00 42.45 4.52
3407 4392 0.392998 CTAGTGCAGAACCGGGCAAT 60.393 55.000 6.32 7.58 42.45 3.56
3408 4393 0.906066 TAGTGCAGAACCGGGCAATA 59.094 50.000 6.32 6.43 42.45 1.90
3409 4394 0.392998 AGTGCAGAACCGGGCAATAG 60.393 55.000 6.32 0.00 42.45 1.73
3410 4395 1.748879 TGCAGAACCGGGCAATAGC 60.749 57.895 6.32 2.35 37.03 2.97
3411 4396 1.748879 GCAGAACCGGGCAATAGCA 60.749 57.895 6.32 0.00 44.61 3.49
3412 4397 1.993369 GCAGAACCGGGCAATAGCAC 61.993 60.000 6.32 0.00 44.61 4.40
3413 4398 1.077716 AGAACCGGGCAATAGCACC 60.078 57.895 6.32 0.00 42.77 5.01
3417 4402 2.437716 CGGGCAATAGCACCGGTT 60.438 61.111 2.97 0.00 45.12 4.44
3418 4403 2.469516 CGGGCAATAGCACCGGTTC 61.470 63.158 2.97 0.00 45.12 3.62
3419 4404 2.469516 GGGCAATAGCACCGGTTCG 61.470 63.158 2.97 0.00 44.61 3.95
3420 4405 1.743995 GGCAATAGCACCGGTTCGT 60.744 57.895 2.97 0.00 44.61 3.85
3421 4406 0.460635 GGCAATAGCACCGGTTCGTA 60.461 55.000 2.97 0.00 44.61 3.43
3422 4407 1.361793 GCAATAGCACCGGTTCGTAA 58.638 50.000 2.97 0.00 41.58 3.18
3423 4408 1.326548 GCAATAGCACCGGTTCGTAAG 59.673 52.381 2.97 0.00 41.58 2.34
3424 4409 1.931172 CAATAGCACCGGTTCGTAAGG 59.069 52.381 2.97 0.00 38.47 2.69
3425 4410 0.179092 ATAGCACCGGTTCGTAAGGC 60.179 55.000 2.97 2.83 38.47 4.35
3426 4411 2.229690 TAGCACCGGTTCGTAAGGCC 62.230 60.000 2.97 0.00 38.47 5.19
3427 4412 2.435410 CACCGGTTCGTAAGGCCC 60.435 66.667 2.97 0.00 38.47 5.80
3428 4413 2.605601 ACCGGTTCGTAAGGCCCT 60.606 61.111 0.00 0.00 38.47 5.19
3429 4414 2.219164 ACCGGTTCGTAAGGCCCTT 61.219 57.895 0.00 0.00 38.47 3.95
3430 4415 1.002990 CCGGTTCGTAAGGCCCTTT 60.003 57.895 0.00 0.00 38.47 3.11
3431 4416 0.249955 CCGGTTCGTAAGGCCCTTTA 59.750 55.000 0.00 0.00 38.47 1.85
3432 4417 1.648504 CGGTTCGTAAGGCCCTTTAG 58.351 55.000 0.00 0.00 38.47 1.85
3433 4418 1.066645 CGGTTCGTAAGGCCCTTTAGT 60.067 52.381 0.00 0.00 38.47 2.24
3434 4419 2.353323 GGTTCGTAAGGCCCTTTAGTG 58.647 52.381 0.00 0.00 38.47 2.74
3435 4420 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
3440 4425 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
3441 4426 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
3442 4427 2.044555 GCCCTTTAGTGCCGGTTCC 61.045 63.158 1.90 0.00 0.00 3.62
3443 4428 1.377229 CCCTTTAGTGCCGGTTCCA 59.623 57.895 1.90 0.00 0.00 3.53
3444 4429 0.034477 CCCTTTAGTGCCGGTTCCAT 60.034 55.000 1.90 0.00 0.00 3.41
3445 4430 1.210967 CCCTTTAGTGCCGGTTCCATA 59.789 52.381 1.90 0.00 0.00 2.74
3446 4431 2.356330 CCCTTTAGTGCCGGTTCCATAA 60.356 50.000 1.90 0.00 0.00 1.90
3447 4432 2.681344 CCTTTAGTGCCGGTTCCATAAC 59.319 50.000 1.90 0.00 34.66 1.89
3456 4441 2.406596 GGTTCCATAACCGGCACTAA 57.593 50.000 0.00 0.00 45.61 2.24
3457 4442 2.713877 GGTTCCATAACCGGCACTAAA 58.286 47.619 0.00 0.00 45.61 1.85
3458 4443 2.681344 GGTTCCATAACCGGCACTAAAG 59.319 50.000 0.00 0.00 45.61 1.85
3459 4444 3.340928 GTTCCATAACCGGCACTAAAGT 58.659 45.455 0.00 0.00 0.00 2.66
3460 4445 5.922080 GGTTCCATAACCGGCACTAAAGTG 61.922 50.000 0.00 5.73 45.61 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.092699 ACCAGGACGGAGGTAGTACTAC 60.093 54.545 22.53 22.53 36.07 2.73
1 2 2.200081 ACCAGGACGGAGGTAGTACTA 58.800 52.381 0.00 0.00 36.07 1.82
3 4 1.844687 AACCAGGACGGAGGTAGTAC 58.155 55.000 0.00 0.00 37.07 2.73
4 5 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
5 6 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
6 7 4.648307 ACTAATAAACCAGGACGGAGGTAG 59.352 45.833 0.00 0.00 37.07 3.18
7 8 4.613437 ACTAATAAACCAGGACGGAGGTA 58.387 43.478 0.00 0.00 37.07 3.08
8 9 3.447950 ACTAATAAACCAGGACGGAGGT 58.552 45.455 0.00 0.00 40.61 3.85
9 10 3.705072 AGACTAATAAACCAGGACGGAGG 59.295 47.826 0.00 0.00 38.63 4.30
10 11 4.645588 AGAGACTAATAAACCAGGACGGAG 59.354 45.833 0.00 0.00 38.63 4.63
11 12 4.607239 AGAGACTAATAAACCAGGACGGA 58.393 43.478 0.00 0.00 38.63 4.69
12 13 5.340439 AAGAGACTAATAAACCAGGACGG 57.660 43.478 0.00 0.00 42.50 4.79
13 14 7.545489 ACTAAAGAGACTAATAAACCAGGACG 58.455 38.462 0.00 0.00 0.00 4.79
103 104 9.653287 TCGTATTTGAACATAGTTTTGAGAGAT 57.347 29.630 0.00 0.00 0.00 2.75
104 105 9.483916 TTCGTATTTGAACATAGTTTTGAGAGA 57.516 29.630 0.00 0.00 0.00 3.10
107 108 9.490663 GGATTCGTATTTGAACATAGTTTTGAG 57.509 33.333 0.00 0.00 0.00 3.02
108 109 9.004717 TGGATTCGTATTTGAACATAGTTTTGA 57.995 29.630 0.00 0.00 0.00 2.69
109 110 9.277565 CTGGATTCGTATTTGAACATAGTTTTG 57.722 33.333 0.00 0.00 0.00 2.44
110 111 8.458843 CCTGGATTCGTATTTGAACATAGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
111 112 7.067008 CCCTGGATTCGTATTTGAACATAGTTT 59.933 37.037 0.00 0.00 0.00 2.66
112 113 6.542370 CCCTGGATTCGTATTTGAACATAGTT 59.458 38.462 0.00 0.00 0.00 2.24
113 114 6.055588 CCCTGGATTCGTATTTGAACATAGT 58.944 40.000 0.00 0.00 0.00 2.12
114 115 6.288294 TCCCTGGATTCGTATTTGAACATAG 58.712 40.000 0.00 0.00 0.00 2.23
115 116 6.241882 TCCCTGGATTCGTATTTGAACATA 57.758 37.500 0.00 0.00 0.00 2.29
116 117 5.110814 TCCCTGGATTCGTATTTGAACAT 57.889 39.130 0.00 0.00 0.00 2.71
117 118 4.561500 TCCCTGGATTCGTATTTGAACA 57.438 40.909 0.00 0.00 0.00 3.18
118 119 8.842358 TTATATCCCTGGATTCGTATTTGAAC 57.158 34.615 3.59 0.00 36.17 3.18
122 123 9.807921 ACAAATTATATCCCTGGATTCGTATTT 57.192 29.630 3.59 3.89 36.17 1.40
123 124 9.231297 CACAAATTATATCCCTGGATTCGTATT 57.769 33.333 3.59 0.00 36.17 1.89
124 125 7.336931 GCACAAATTATATCCCTGGATTCGTAT 59.663 37.037 3.59 0.00 36.17 3.06
125 126 6.653320 GCACAAATTATATCCCTGGATTCGTA 59.347 38.462 3.59 0.00 36.17 3.43
126 127 5.473504 GCACAAATTATATCCCTGGATTCGT 59.526 40.000 3.59 0.00 36.17 3.85
127 128 5.707298 AGCACAAATTATATCCCTGGATTCG 59.293 40.000 3.59 0.00 36.17 3.34
128 129 8.515414 GTTAGCACAAATTATATCCCTGGATTC 58.485 37.037 3.59 0.00 36.17 2.52
129 130 8.004215 TGTTAGCACAAATTATATCCCTGGATT 58.996 33.333 3.59 0.00 36.17 3.01
130 131 7.526041 TGTTAGCACAAATTATATCCCTGGAT 58.474 34.615 3.79 3.79 38.54 3.41
131 132 6.905736 TGTTAGCACAAATTATATCCCTGGA 58.094 36.000 0.00 0.00 0.00 3.86
132 133 7.231317 ACATGTTAGCACAAATTATATCCCTGG 59.769 37.037 0.00 0.00 36.16 4.45
133 134 8.169977 ACATGTTAGCACAAATTATATCCCTG 57.830 34.615 0.00 0.00 36.16 4.45
163 164 9.878667 TGACCATCGATTTGACTTAGTAAATAA 57.121 29.630 0.00 0.00 0.00 1.40
164 165 9.878667 TTGACCATCGATTTGACTTAGTAAATA 57.121 29.630 0.00 0.00 0.00 1.40
165 166 8.786826 TTGACCATCGATTTGACTTAGTAAAT 57.213 30.769 0.00 0.00 0.00 1.40
166 167 8.610248 TTTGACCATCGATTTGACTTAGTAAA 57.390 30.769 0.00 0.00 0.00 2.01
167 168 7.876068 ACTTTGACCATCGATTTGACTTAGTAA 59.124 33.333 0.00 0.00 0.00 2.24
168 169 7.383687 ACTTTGACCATCGATTTGACTTAGTA 58.616 34.615 0.00 0.00 0.00 1.82
169 170 6.231211 ACTTTGACCATCGATTTGACTTAGT 58.769 36.000 0.00 0.00 0.00 2.24
170 171 6.727824 ACTTTGACCATCGATTTGACTTAG 57.272 37.500 0.00 0.00 0.00 2.18
171 172 6.072728 CCAACTTTGACCATCGATTTGACTTA 60.073 38.462 0.00 0.00 0.00 2.24
172 173 5.278463 CCAACTTTGACCATCGATTTGACTT 60.278 40.000 0.00 0.00 0.00 3.01
173 174 4.216257 CCAACTTTGACCATCGATTTGACT 59.784 41.667 0.00 0.00 0.00 3.41
174 175 4.475944 CCAACTTTGACCATCGATTTGAC 58.524 43.478 0.00 0.00 0.00 3.18
175 176 3.505680 CCCAACTTTGACCATCGATTTGA 59.494 43.478 0.00 0.00 0.00 2.69
176 177 3.836949 CCCAACTTTGACCATCGATTTG 58.163 45.455 0.00 0.00 0.00 2.32
177 178 2.231235 GCCCAACTTTGACCATCGATTT 59.769 45.455 0.00 0.00 0.00 2.17
178 179 1.818674 GCCCAACTTTGACCATCGATT 59.181 47.619 0.00 0.00 0.00 3.34
179 180 1.271871 TGCCCAACTTTGACCATCGAT 60.272 47.619 0.00 0.00 0.00 3.59
180 181 0.109532 TGCCCAACTTTGACCATCGA 59.890 50.000 0.00 0.00 0.00 3.59
181 182 0.240945 GTGCCCAACTTTGACCATCG 59.759 55.000 0.00 0.00 0.00 3.84
182 183 1.327303 TGTGCCCAACTTTGACCATC 58.673 50.000 0.00 0.00 0.00 3.51
183 184 1.786937 TTGTGCCCAACTTTGACCAT 58.213 45.000 0.00 0.00 0.00 3.55
184 185 1.561643 TTTGTGCCCAACTTTGACCA 58.438 45.000 0.00 0.00 0.00 4.02
185 186 2.682155 TTTTGTGCCCAACTTTGACC 57.318 45.000 0.00 0.00 0.00 4.02
186 187 4.944048 AGTATTTTGTGCCCAACTTTGAC 58.056 39.130 0.00 0.00 0.00 3.18
187 188 6.295011 CCATAGTATTTTGTGCCCAACTTTGA 60.295 38.462 0.00 0.00 0.00 2.69
188 189 5.868801 CCATAGTATTTTGTGCCCAACTTTG 59.131 40.000 0.00 0.00 0.00 2.77
189 190 5.046663 CCCATAGTATTTTGTGCCCAACTTT 60.047 40.000 0.00 0.00 0.00 2.66
190 191 4.466015 CCCATAGTATTTTGTGCCCAACTT 59.534 41.667 0.00 0.00 0.00 2.66
191 192 4.023291 CCCATAGTATTTTGTGCCCAACT 58.977 43.478 0.00 0.00 0.00 3.16
192 193 3.132111 CCCCATAGTATTTTGTGCCCAAC 59.868 47.826 0.00 0.00 0.00 3.77
193 194 3.011821 TCCCCATAGTATTTTGTGCCCAA 59.988 43.478 0.00 0.00 0.00 4.12
194 195 2.583101 TCCCCATAGTATTTTGTGCCCA 59.417 45.455 0.00 0.00 0.00 5.36
195 196 2.956333 GTCCCCATAGTATTTTGTGCCC 59.044 50.000 0.00 0.00 0.00 5.36
196 197 2.956333 GGTCCCCATAGTATTTTGTGCC 59.044 50.000 0.00 0.00 0.00 5.01
197 198 3.626930 TGGTCCCCATAGTATTTTGTGC 58.373 45.455 0.00 0.00 0.00 4.57
198 199 7.889873 TTATTGGTCCCCATAGTATTTTGTG 57.110 36.000 0.00 0.00 31.53 3.33
199 200 7.343574 GGTTTATTGGTCCCCATAGTATTTTGT 59.656 37.037 0.00 0.00 31.53 2.83
200 201 7.343316 TGGTTTATTGGTCCCCATAGTATTTTG 59.657 37.037 0.00 0.00 31.53 2.44
201 202 7.423341 TGGTTTATTGGTCCCCATAGTATTTT 58.577 34.615 0.00 0.00 31.53 1.82
202 203 6.987557 TGGTTTATTGGTCCCCATAGTATTT 58.012 36.000 0.00 0.00 31.53 1.40
203 204 6.411554 CCTGGTTTATTGGTCCCCATAGTATT 60.412 42.308 0.00 0.00 31.53 1.89
204 205 5.074515 CCTGGTTTATTGGTCCCCATAGTAT 59.925 44.000 0.00 0.00 31.53 2.12
205 206 4.414182 CCTGGTTTATTGGTCCCCATAGTA 59.586 45.833 0.00 0.00 31.53 1.82
206 207 3.204382 CCTGGTTTATTGGTCCCCATAGT 59.796 47.826 0.00 0.00 31.53 2.12
207 208 3.461831 TCCTGGTTTATTGGTCCCCATAG 59.538 47.826 0.00 0.00 31.53 2.23
208 209 3.203487 GTCCTGGTTTATTGGTCCCCATA 59.797 47.826 0.00 0.00 31.53 2.74
209 210 2.024369 GTCCTGGTTTATTGGTCCCCAT 60.024 50.000 0.00 0.00 31.53 4.00
210 211 1.356398 GTCCTGGTTTATTGGTCCCCA 59.644 52.381 0.00 0.00 0.00 4.96
211 212 1.680860 CGTCCTGGTTTATTGGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
212 213 1.680860 CCGTCCTGGTTTATTGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
213 214 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
214 215 2.629051 CTCCGTCCTGGTTTATTGGTC 58.371 52.381 0.00 0.00 39.52 4.02
215 216 1.280998 CCTCCGTCCTGGTTTATTGGT 59.719 52.381 0.00 0.00 39.52 3.67
216 217 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
217 218 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
218 219 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
219 220 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
220 221 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
221 222 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
222 223 2.292061 ACATACTACCTCCGTCCTGGTT 60.292 50.000 0.00 0.00 39.52 3.67
223 224 1.287146 ACATACTACCTCCGTCCTGGT 59.713 52.381 0.00 0.00 39.52 4.00
224 225 1.681793 CACATACTACCTCCGTCCTGG 59.318 57.143 0.00 0.00 40.09 4.45
225 226 2.358267 GACACATACTACCTCCGTCCTG 59.642 54.545 0.00 0.00 0.00 3.86
226 227 2.025605 TGACACATACTACCTCCGTCCT 60.026 50.000 0.00 0.00 0.00 3.85
227 228 2.372264 TGACACATACTACCTCCGTCC 58.628 52.381 0.00 0.00 0.00 4.79
228 229 4.097437 TCAATGACACATACTACCTCCGTC 59.903 45.833 0.00 0.00 0.00 4.79
229 230 4.021229 TCAATGACACATACTACCTCCGT 58.979 43.478 0.00 0.00 0.00 4.69
230 231 4.649088 TCAATGACACATACTACCTCCG 57.351 45.455 0.00 0.00 0.00 4.63
231 232 6.150318 CGTATCAATGACACATACTACCTCC 58.850 44.000 0.00 0.00 0.00 4.30
232 233 6.016527 TCCGTATCAATGACACATACTACCTC 60.017 42.308 0.00 0.00 0.00 3.85
233 234 5.831525 TCCGTATCAATGACACATACTACCT 59.168 40.000 0.00 0.00 0.00 3.08
234 235 6.080648 TCCGTATCAATGACACATACTACC 57.919 41.667 0.00 0.00 0.00 3.18
267 268 2.622064 ATGTGGTCTTTCCTATCCGC 57.378 50.000 0.00 0.00 37.07 5.54
293 294 6.390048 TCTTCTTCCTGTACTCTTCTAGGA 57.610 41.667 0.00 0.00 37.55 2.94
331 332 1.548719 TCATCGACAACGTCCTCCAAT 59.451 47.619 0.00 0.00 40.69 3.16
332 333 0.963225 TCATCGACAACGTCCTCCAA 59.037 50.000 0.00 0.00 40.69 3.53
333 334 0.242825 GTCATCGACAACGTCCTCCA 59.757 55.000 0.00 0.00 40.69 3.86
482 483 3.697542 GTGACCCCACTAAAGTGTTGTTT 59.302 43.478 9.17 0.00 44.21 2.83
506 507 4.013728 TGCAACAATAATGTAGACACCCC 58.986 43.478 0.00 0.00 39.40 4.95
521 522 0.609957 AGGCTGCTGCTATGCAACAA 60.610 50.000 15.64 0.00 42.83 2.83
522 523 1.001764 AGGCTGCTGCTATGCAACA 60.002 52.632 15.64 0.00 42.83 3.33
523 524 1.722636 GGAGGCTGCTGCTATGCAAC 61.723 60.000 15.64 0.00 42.83 4.17
524 525 1.452651 GGAGGCTGCTGCTATGCAA 60.453 57.895 15.64 0.00 42.83 4.08
525 526 2.191375 GGAGGCTGCTGCTATGCA 59.809 61.111 15.64 0.00 41.05 3.96
526 527 2.594013 GGGAGGCTGCTGCTATGC 60.594 66.667 15.64 9.52 39.59 3.14
527 528 1.992519 AAGGGGAGGCTGCTGCTATG 61.993 60.000 15.64 0.00 39.59 2.23
528 529 0.400525 TAAGGGGAGGCTGCTGCTAT 60.401 55.000 15.64 4.57 39.59 2.97
529 530 0.620410 TTAAGGGGAGGCTGCTGCTA 60.620 55.000 15.64 0.00 39.59 3.49
530 531 1.925455 TTAAGGGGAGGCTGCTGCT 60.925 57.895 15.64 1.41 39.59 4.24
531 532 1.750780 GTTAAGGGGAGGCTGCTGC 60.751 63.158 5.84 7.10 38.76 5.25
532 533 0.038166 TTGTTAAGGGGAGGCTGCTG 59.962 55.000 5.84 0.00 0.00 4.41
533 534 0.777446 TTTGTTAAGGGGAGGCTGCT 59.223 50.000 5.84 0.00 0.00 4.24
534 535 1.177401 CTTTGTTAAGGGGAGGCTGC 58.823 55.000 0.00 0.00 0.00 5.25
535 536 2.162681 CACTTTGTTAAGGGGAGGCTG 58.837 52.381 0.00 0.00 35.61 4.85
536 537 2.062636 TCACTTTGTTAAGGGGAGGCT 58.937 47.619 0.00 0.00 35.40 4.58
537 538 2.579410 TCACTTTGTTAAGGGGAGGC 57.421 50.000 0.00 0.00 35.40 4.70
538 539 4.576330 AGATCACTTTGTTAAGGGGAGG 57.424 45.455 0.00 0.00 35.40 4.30
539 540 6.595716 CAGTTAGATCACTTTGTTAAGGGGAG 59.404 42.308 0.00 0.00 35.40 4.30
540 541 6.271391 TCAGTTAGATCACTTTGTTAAGGGGA 59.729 38.462 0.00 0.00 35.40 4.81
541 542 6.371825 GTCAGTTAGATCACTTTGTTAAGGGG 59.628 42.308 0.00 0.00 35.40 4.79
542 543 7.162082 AGTCAGTTAGATCACTTTGTTAAGGG 58.838 38.462 0.00 0.00 36.04 3.95
543 544 9.706691 TTAGTCAGTTAGATCACTTTGTTAAGG 57.293 33.333 0.00 0.00 35.61 2.69
545 546 9.706691 CCTTAGTCAGTTAGATCACTTTGTTAA 57.293 33.333 0.00 0.00 0.00 2.01
546 547 8.867097 ACCTTAGTCAGTTAGATCACTTTGTTA 58.133 33.333 0.00 0.00 0.00 2.41
547 548 7.736893 ACCTTAGTCAGTTAGATCACTTTGTT 58.263 34.615 0.00 0.00 0.00 2.83
584 585 8.827677 GGAGACTTATTCTACGCATTACATTTT 58.172 33.333 0.00 0.00 33.22 1.82
588 589 6.710597 AGGAGACTTATTCTACGCATTACA 57.289 37.500 0.00 0.00 40.72 2.41
706 1004 0.405198 TGGAGGTGCACCATTCATGT 59.595 50.000 36.39 15.25 38.89 3.21
709 1007 1.133513 ACTTTGGAGGTGCACCATTCA 60.134 47.619 36.39 26.14 37.26 2.57
752 1050 1.011968 TGTCACGTACGCATGGAAGC 61.012 55.000 16.72 0.00 0.00 3.86
753 1051 0.992072 CTGTCACGTACGCATGGAAG 59.008 55.000 16.72 4.96 0.00 3.46
761 1059 1.781429 GCTATGATGCTGTCACGTACG 59.219 52.381 15.01 15.01 40.28 3.67
782 1080 4.561105 AGCTTCAACAGAAGTAGTACAGC 58.439 43.478 2.52 0.00 40.66 4.40
793 1091 2.866156 CTGTCGTTTGAGCTTCAACAGA 59.134 45.455 9.05 5.18 34.90 3.41
903 1203 0.655733 CGTAGGCCGCATAACCAAAG 59.344 55.000 0.00 0.00 0.00 2.77
1002 1320 1.669211 GCTTCTCTACGCACGGTTCTT 60.669 52.381 0.00 0.00 0.00 2.52
1008 1326 1.359848 ATTTGGCTTCTCTACGCACG 58.640 50.000 0.00 0.00 0.00 5.34
1009 1327 3.259064 TGTATTTGGCTTCTCTACGCAC 58.741 45.455 0.00 0.00 0.00 5.34
1239 1565 1.174783 TCTGCTTCTCACCGTCCTAC 58.825 55.000 0.00 0.00 0.00 3.18
1312 1638 0.459899 TCACCGATCACCTTCATCCG 59.540 55.000 0.00 0.00 0.00 4.18
1405 1750 5.301298 GGATGAGAATTGATTTAAGCTGGCT 59.699 40.000 0.00 0.00 0.00 4.75
1409 1754 8.411683 GTTGATGGATGAGAATTGATTTAAGCT 58.588 33.333 0.00 0.00 0.00 3.74
1419 1767 7.501559 CAGTTAGATGGTTGATGGATGAGAATT 59.498 37.037 0.00 0.00 0.00 2.17
1433 1783 4.993705 TCCCAAGAACAGTTAGATGGTT 57.006 40.909 9.50 0.00 0.00 3.67
1435 1785 4.122776 CGATCCCAAGAACAGTTAGATGG 58.877 47.826 5.01 5.01 0.00 3.51
1516 1871 0.109086 CTGGTGAGCAGTGGTAGTCG 60.109 60.000 2.99 0.00 0.00 4.18
1547 1902 3.430333 GTGATGGTTCACCGTTTGTTT 57.570 42.857 0.00 0.00 45.45 2.83
1662 2037 2.165167 CTCCATTGGAAGCTTGCTCAA 58.835 47.619 19.34 13.09 0.00 3.02
1742 2117 4.202567 GGCTTCATTGATCCAGGGGTAATA 60.203 45.833 0.00 0.00 0.00 0.98
2167 2582 0.387239 CTTAAAGTGGCCGTTGCTGC 60.387 55.000 0.00 0.00 37.74 5.25
2169 2584 2.200373 ATCTTAAAGTGGCCGTTGCT 57.800 45.000 0.00 0.00 37.74 3.91
2183 2598 4.982295 CGATGACAACTCGGCATTATCTTA 59.018 41.667 0.00 0.00 32.58 2.10
2207 2622 1.142060 ACGATTGTGAGAACCAACCCA 59.858 47.619 0.00 0.00 0.00 4.51
2234 2649 4.102649 GTGCACTTAACAACAAACCTCAC 58.897 43.478 10.32 0.00 0.00 3.51
2268 2683 5.336102 TCAGATATCCAGATCAGGTGCATA 58.664 41.667 3.80 0.00 0.00 3.14
2311 2726 1.190643 TATGCTGGTGACATCCGTGA 58.809 50.000 0.00 0.00 41.51 4.35
2370 2785 4.297299 ACAAATTAAGCCTCGATGCATG 57.703 40.909 15.26 6.33 0.00 4.06
2393 2808 2.158682 TGCATACATGTATGGGACCACC 60.159 50.000 35.42 22.29 42.32 4.61
2394 2809 2.878406 GTGCATACATGTATGGGACCAC 59.122 50.000 35.42 29.93 42.32 4.16
2413 3012 3.183754 GGGAAACAAAAACCGAACAGTG 58.816 45.455 0.00 0.00 0.00 3.66
2415 3014 3.512033 TGGGAAACAAAAACCGAACAG 57.488 42.857 0.00 0.00 0.00 3.16
2421 3020 4.587262 AGTGGTAGATGGGAAACAAAAACC 59.413 41.667 0.00 0.00 0.00 3.27
2501 3101 1.134788 GTCCTAACCATCCGACCACAG 60.135 57.143 0.00 0.00 0.00 3.66
2508 3108 6.350277 GGAGATACTAATGTCCTAACCATCCG 60.350 46.154 0.00 0.00 41.39 4.18
2513 3113 5.279556 GGCTGGAGATACTAATGTCCTAACC 60.280 48.000 3.56 0.00 44.26 2.85
2523 3123 3.242867 CCTGATGGGCTGGAGATACTAA 58.757 50.000 0.00 0.00 37.79 2.24
2532 3132 0.038744 ACTTGAACCTGATGGGCTGG 59.961 55.000 0.00 0.00 41.12 4.85
2533 3133 1.457346 GACTTGAACCTGATGGGCTG 58.543 55.000 0.00 0.00 39.10 4.85
2534 3134 0.329596 GGACTTGAACCTGATGGGCT 59.670 55.000 0.00 0.00 39.10 5.19
2587 3187 1.463674 AAAGCATCGCCGAAATTCCT 58.536 45.000 0.00 0.00 0.00 3.36
2622 3222 2.666508 CACCTTGTAGTCGATGGAAACG 59.333 50.000 0.00 0.00 0.00 3.60
2627 3227 0.537188 AGGCACCTTGTAGTCGATGG 59.463 55.000 0.00 0.00 0.00 3.51
2629 3229 1.478510 CAGAGGCACCTTGTAGTCGAT 59.521 52.381 0.00 0.00 0.00 3.59
2634 3234 0.976641 TCACCAGAGGCACCTTGTAG 59.023 55.000 0.00 0.00 0.00 2.74
2636 3236 1.056700 AGTCACCAGAGGCACCTTGT 61.057 55.000 0.00 0.00 0.00 3.16
2679 3279 1.098129 CCGAGAGACTCAGCCGATCA 61.098 60.000 5.02 0.00 0.00 2.92
2688 3288 1.098869 TGAGCACATCCGAGAGACTC 58.901 55.000 0.00 0.00 0.00 3.36
2723 3323 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
2743 3343 6.775629 TGCTCATATATACACAGGTACACTCA 59.224 38.462 0.00 0.00 30.94 3.41
2831 3435 4.523943 TGGTCAGCTTTTGATGCAAATACT 59.476 37.500 0.00 0.00 38.29 2.12
2838 3442 3.581024 TTCATGGTCAGCTTTTGATGC 57.419 42.857 0.00 0.00 38.29 3.91
3035 3639 5.964751 CGCATTTCAACGTATTTCATCATGA 59.035 36.000 0.00 0.00 0.00 3.07
3038 3642 5.320723 GTCGCATTTCAACGTATTTCATCA 58.679 37.500 0.00 0.00 0.00 3.07
3039 3643 4.728608 GGTCGCATTTCAACGTATTTCATC 59.271 41.667 0.00 0.00 0.00 2.92
3040 3644 4.394920 AGGTCGCATTTCAACGTATTTCAT 59.605 37.500 0.00 0.00 0.00 2.57
3042 3646 4.088648 CAGGTCGCATTTCAACGTATTTC 58.911 43.478 0.00 0.00 0.00 2.17
3043 3647 3.500680 ACAGGTCGCATTTCAACGTATTT 59.499 39.130 0.00 0.00 0.00 1.40
3044 3648 3.071479 ACAGGTCGCATTTCAACGTATT 58.929 40.909 0.00 0.00 0.00 1.89
3047 3651 0.586319 CACAGGTCGCATTTCAACGT 59.414 50.000 0.00 0.00 0.00 3.99
3048 3652 0.586319 ACACAGGTCGCATTTCAACG 59.414 50.000 0.00 0.00 0.00 4.10
3049 3653 1.601903 TCACACAGGTCGCATTTCAAC 59.398 47.619 0.00 0.00 0.00 3.18
3051 3655 1.960417 TTCACACAGGTCGCATTTCA 58.040 45.000 0.00 0.00 0.00 2.69
3071 3675 5.549742 TCCAAGCCATGAATTTGTCTTTT 57.450 34.783 0.00 0.00 0.00 2.27
3072 3676 5.511888 CCTTCCAAGCCATGAATTTGTCTTT 60.512 40.000 0.00 0.00 0.00 2.52
3073 3677 4.020839 CCTTCCAAGCCATGAATTTGTCTT 60.021 41.667 0.00 0.00 0.00 3.01
3074 3678 3.512724 CCTTCCAAGCCATGAATTTGTCT 59.487 43.478 0.00 0.00 0.00 3.41
3075 3679 3.511146 TCCTTCCAAGCCATGAATTTGTC 59.489 43.478 0.00 0.00 0.00 3.18
3076 3680 3.509442 TCCTTCCAAGCCATGAATTTGT 58.491 40.909 0.00 0.00 0.00 2.83
3088 3795 7.935755 ACACATGATACTATTCATCCTTCCAAG 59.064 37.037 0.00 0.00 34.09 3.61
3090 3797 7.379059 ACACATGATACTATTCATCCTTCCA 57.621 36.000 0.00 0.00 34.09 3.53
3091 3798 9.778741 TTAACACATGATACTATTCATCCTTCC 57.221 33.333 0.00 0.00 34.09 3.46
3098 3805 9.502091 GGGCTATTTAACACATGATACTATTCA 57.498 33.333 0.00 0.00 0.00 2.57
3099 3806 8.947115 GGGGCTATTTAACACATGATACTATTC 58.053 37.037 0.00 0.00 0.00 1.75
3100 3807 7.606456 CGGGGCTATTTAACACATGATACTATT 59.394 37.037 0.00 0.00 0.00 1.73
3101 3808 7.103641 CGGGGCTATTTAACACATGATACTAT 58.896 38.462 0.00 0.00 0.00 2.12
3102 3809 6.460781 CGGGGCTATTTAACACATGATACTA 58.539 40.000 0.00 0.00 0.00 1.82
3104 3811 4.454504 CCGGGGCTATTTAACACATGATAC 59.545 45.833 0.00 0.00 0.00 2.24
3105 3812 4.505918 CCCGGGGCTATTTAACACATGATA 60.506 45.833 14.71 0.00 0.00 2.15
3106 3813 3.486383 CCGGGGCTATTTAACACATGAT 58.514 45.455 0.00 0.00 0.00 2.45
3107 3814 2.422235 CCCGGGGCTATTTAACACATGA 60.422 50.000 14.71 0.00 0.00 3.07
3110 3817 0.993470 ACCCGGGGCTATTTAACACA 59.007 50.000 27.92 0.00 0.00 3.72
3114 3821 2.309458 AGACAAACCCGGGGCTATTTAA 59.691 45.455 27.92 0.00 0.00 1.52
3116 3823 0.702316 AGACAAACCCGGGGCTATTT 59.298 50.000 27.92 13.59 0.00 1.40
3117 3824 0.702316 AAGACAAACCCGGGGCTATT 59.298 50.000 27.92 11.44 0.00 1.73
3118 3825 0.702316 AAAGACAAACCCGGGGCTAT 59.298 50.000 27.92 7.47 0.00 2.97
3121 3828 0.826256 AAGAAAGACAAACCCGGGGC 60.826 55.000 27.92 8.49 0.00 5.80
3122 3829 0.958822 CAAGAAAGACAAACCCGGGG 59.041 55.000 27.92 12.73 0.00 5.73
3123 3830 0.313987 GCAAGAAAGACAAACCCGGG 59.686 55.000 22.25 22.25 0.00 5.73
3124 3831 1.028905 TGCAAGAAAGACAAACCCGG 58.971 50.000 0.00 0.00 0.00 5.73
3126 3833 3.186909 GTTGTGCAAGAAAGACAAACCC 58.813 45.455 0.00 0.00 31.62 4.11
3129 3836 3.096092 AGGGTTGTGCAAGAAAGACAAA 58.904 40.909 0.00 0.00 31.62 2.83
3134 4119 4.202141 TGAAATGAGGGTTGTGCAAGAAAG 60.202 41.667 0.00 0.00 0.00 2.62
3142 4127 5.371115 AATACGTTGAAATGAGGGTTGTG 57.629 39.130 0.00 0.00 0.00 3.33
3146 4131 4.321675 GGCAAAATACGTTGAAATGAGGGT 60.322 41.667 0.00 0.00 0.00 4.34
3148 4133 4.082245 AGGGCAAAATACGTTGAAATGAGG 60.082 41.667 0.00 0.00 0.00 3.86
3151 4136 4.804108 TCAGGGCAAAATACGTTGAAATG 58.196 39.130 0.00 0.00 0.00 2.32
3152 4137 5.461032 TTCAGGGCAAAATACGTTGAAAT 57.539 34.783 0.00 0.00 0.00 2.17
3153 4138 4.920640 TTCAGGGCAAAATACGTTGAAA 57.079 36.364 0.00 0.00 0.00 2.69
3154 4139 4.920640 TTTCAGGGCAAAATACGTTGAA 57.079 36.364 0.00 0.00 0.00 2.69
3156 4141 6.538189 AAATTTTCAGGGCAAAATACGTTG 57.462 33.333 0.00 0.00 35.35 4.10
3157 4142 7.170151 GTGTAAATTTTCAGGGCAAAATACGTT 59.830 33.333 0.00 0.00 35.35 3.99
3159 4144 6.642950 TGTGTAAATTTTCAGGGCAAAATACG 59.357 34.615 0.00 0.00 35.35 3.06
3164 4149 7.601886 CACATATGTGTAAATTTTCAGGGCAAA 59.398 33.333 24.91 0.00 40.96 3.68
3165 4150 7.095910 CACATATGTGTAAATTTTCAGGGCAA 58.904 34.615 24.91 0.00 40.96 4.52
3166 4151 6.629128 CACATATGTGTAAATTTTCAGGGCA 58.371 36.000 24.91 0.00 40.96 5.36
3180 4165 7.720957 ACATGAAGGCATAATACACATATGTGT 59.279 33.333 36.40 36.40 45.98 3.72
3181 4166 8.102800 ACATGAAGGCATAATACACATATGTG 57.897 34.615 29.97 29.97 41.42 3.21
3182 4167 9.964354 ATACATGAAGGCATAATACACATATGT 57.036 29.630 1.41 1.41 36.63 2.29
3188 4173 9.658799 ACAGATATACATGAAGGCATAATACAC 57.341 33.333 0.00 0.00 32.27 2.90
3260 4245 9.218440 GGCCTTCAGATTCAAAATTCAAATTTA 57.782 29.630 0.00 0.00 37.62 1.40
3261 4246 7.940688 AGGCCTTCAGATTCAAAATTCAAATTT 59.059 29.630 0.00 0.00 40.15 1.82
3262 4247 7.455891 AGGCCTTCAGATTCAAAATTCAAATT 58.544 30.769 0.00 0.00 0.00 1.82
3263 4248 7.012661 AGGCCTTCAGATTCAAAATTCAAAT 57.987 32.000 0.00 0.00 0.00 2.32
3264 4249 6.423776 AGGCCTTCAGATTCAAAATTCAAA 57.576 33.333 0.00 0.00 0.00 2.69
3265 4250 5.047092 GGAGGCCTTCAGATTCAAAATTCAA 60.047 40.000 6.77 0.00 0.00 2.69
3266 4251 4.463891 GGAGGCCTTCAGATTCAAAATTCA 59.536 41.667 6.77 0.00 0.00 2.57
3267 4252 4.463891 TGGAGGCCTTCAGATTCAAAATTC 59.536 41.667 10.69 0.00 0.00 2.17
3268 4253 4.419282 TGGAGGCCTTCAGATTCAAAATT 58.581 39.130 10.69 0.00 0.00 1.82
3269 4254 4.021916 CTGGAGGCCTTCAGATTCAAAAT 58.978 43.478 34.69 0.00 33.11 1.82
3270 4255 3.181429 ACTGGAGGCCTTCAGATTCAAAA 60.181 43.478 42.24 4.79 35.20 2.44
3271 4256 2.376518 ACTGGAGGCCTTCAGATTCAAA 59.623 45.455 42.24 5.60 35.20 2.69
3272 4257 1.988107 ACTGGAGGCCTTCAGATTCAA 59.012 47.619 42.24 6.42 35.20 2.69
3273 4258 1.280133 CACTGGAGGCCTTCAGATTCA 59.720 52.381 42.24 8.24 35.20 2.57
3274 4259 1.556911 TCACTGGAGGCCTTCAGATTC 59.443 52.381 42.24 12.85 35.20 2.52
3275 4260 1.558756 CTCACTGGAGGCCTTCAGATT 59.441 52.381 42.24 22.29 37.51 2.40
3276 4261 1.202330 CTCACTGGAGGCCTTCAGAT 58.798 55.000 42.24 25.46 37.51 2.90
3277 4262 1.548357 GCTCACTGGAGGCCTTCAGA 61.548 60.000 42.24 23.44 41.67 3.27
3278 4263 1.078567 GCTCACTGGAGGCCTTCAG 60.079 63.158 35.71 35.71 41.67 3.02
3279 4264 1.537397 AGCTCACTGGAGGCCTTCA 60.537 57.895 14.76 14.76 41.67 3.02
3280 4265 1.220477 GAGCTCACTGGAGGCCTTC 59.780 63.158 6.77 4.87 41.67 3.46
3281 4266 2.654079 CGAGCTCACTGGAGGCCTT 61.654 63.158 15.40 0.00 41.67 4.35
3282 4267 3.073735 CGAGCTCACTGGAGGCCT 61.074 66.667 15.40 3.86 41.67 5.19
3283 4268 4.154347 CCGAGCTCACTGGAGGCC 62.154 72.222 15.40 0.00 41.67 5.19
3284 4269 3.363844 GACCGAGCTCACTGGAGGC 62.364 68.421 15.40 0.00 41.67 4.70
3285 4270 1.979155 TGACCGAGCTCACTGGAGG 60.979 63.158 15.40 8.04 41.67 4.30
3286 4271 1.214062 GTGACCGAGCTCACTGGAG 59.786 63.158 15.40 0.00 44.33 3.86
3287 4272 2.276116 GGTGACCGAGCTCACTGGA 61.276 63.158 15.40 0.00 40.50 3.86
3288 4273 2.099652 TTGGTGACCGAGCTCACTGG 62.100 60.000 15.40 9.60 40.50 4.00
3289 4274 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66
3290 4275 0.034059 CTTTGGTGACCGAGCTCACT 59.966 55.000 15.40 0.00 40.50 3.41
3291 4276 0.249911 ACTTTGGTGACCGAGCTCAC 60.250 55.000 15.40 4.81 40.02 3.51
3292 4277 0.033504 GACTTTGGTGACCGAGCTCA 59.966 55.000 15.40 0.00 0.00 4.26
3293 4278 0.033504 TGACTTTGGTGACCGAGCTC 59.966 55.000 2.73 2.73 0.00 4.09
3294 4279 0.034059 CTGACTTTGGTGACCGAGCT 59.966 55.000 0.00 0.00 0.00 4.09
3295 4280 0.249911 ACTGACTTTGGTGACCGAGC 60.250 55.000 0.00 0.00 0.00 5.03
3296 4281 2.240493 AACTGACTTTGGTGACCGAG 57.760 50.000 0.00 0.00 0.00 4.63
3297 4282 2.557317 GAAACTGACTTTGGTGACCGA 58.443 47.619 0.00 0.00 0.00 4.69
3298 4283 1.602377 GGAAACTGACTTTGGTGACCG 59.398 52.381 0.00 0.00 0.00 4.79
3299 4284 1.602377 CGGAAACTGACTTTGGTGACC 59.398 52.381 0.00 0.00 0.00 4.02
3300 4285 1.602377 CCGGAAACTGACTTTGGTGAC 59.398 52.381 0.00 0.00 0.00 3.67
3301 4286 1.476110 CCCGGAAACTGACTTTGGTGA 60.476 52.381 0.73 0.00 0.00 4.02
3302 4287 0.951558 CCCGGAAACTGACTTTGGTG 59.048 55.000 0.73 0.00 0.00 4.17
3303 4288 0.822121 GCCCGGAAACTGACTTTGGT 60.822 55.000 0.73 0.00 0.00 3.67
3304 4289 1.852067 CGCCCGGAAACTGACTTTGG 61.852 60.000 0.73 0.00 0.00 3.28
3305 4290 0.882927 TCGCCCGGAAACTGACTTTG 60.883 55.000 0.73 0.00 0.00 2.77
3306 4291 0.179040 TTCGCCCGGAAACTGACTTT 60.179 50.000 0.73 0.00 0.00 2.66
3307 4292 0.179040 TTTCGCCCGGAAACTGACTT 60.179 50.000 0.73 0.00 39.67 3.01
3308 4293 0.602905 CTTTCGCCCGGAAACTGACT 60.603 55.000 0.73 0.00 39.67 3.41
3309 4294 0.883370 ACTTTCGCCCGGAAACTGAC 60.883 55.000 0.73 0.00 39.67 3.51
3310 4295 0.601841 GACTTTCGCCCGGAAACTGA 60.602 55.000 0.73 0.00 39.67 3.41
3311 4296 0.602905 AGACTTTCGCCCGGAAACTG 60.603 55.000 0.73 0.00 39.67 3.16
3312 4297 0.971386 TAGACTTTCGCCCGGAAACT 59.029 50.000 0.73 0.00 39.67 2.66
3313 4298 1.073964 GTAGACTTTCGCCCGGAAAC 58.926 55.000 0.73 0.00 39.67 2.78
3314 4299 0.971386 AGTAGACTTTCGCCCGGAAA 59.029 50.000 0.73 0.00 42.23 3.13
3315 4300 0.971386 AAGTAGACTTTCGCCCGGAA 59.029 50.000 0.73 0.00 30.82 4.30
3316 4301 0.529378 GAAGTAGACTTTCGCCCGGA 59.471 55.000 0.73 0.00 36.11 5.14
3317 4302 0.801067 CGAAGTAGACTTTCGCCCGG 60.801 60.000 0.00 0.00 36.11 5.73
3318 4303 0.109412 ACGAAGTAGACTTTCGCCCG 60.109 55.000 8.80 6.56 41.94 6.13
3319 4304 1.725164 CAACGAAGTAGACTTTCGCCC 59.275 52.381 8.80 0.00 45.00 6.13
3320 4305 2.401351 ACAACGAAGTAGACTTTCGCC 58.599 47.619 8.80 0.00 45.00 5.54
3321 4306 3.047796 TGACAACGAAGTAGACTTTCGC 58.952 45.455 8.80 0.00 45.00 4.70
3322 4307 4.915667 TGATGACAACGAAGTAGACTTTCG 59.084 41.667 7.57 7.57 45.00 3.46
3323 4308 6.952935 ATGATGACAACGAAGTAGACTTTC 57.047 37.500 0.00 0.00 45.00 2.62
3324 4309 7.375834 TGTATGATGACAACGAAGTAGACTTT 58.624 34.615 0.00 0.00 45.00 2.66
3325 4310 6.920817 TGTATGATGACAACGAAGTAGACTT 58.079 36.000 0.00 0.00 45.00 3.01
3326 4311 6.510879 TGTATGATGACAACGAAGTAGACT 57.489 37.500 0.00 0.00 45.00 3.24
3327 4312 7.576750 TTTGTATGATGACAACGAAGTAGAC 57.423 36.000 0.00 0.00 45.00 2.59
3328 4313 7.148639 GCTTTTGTATGATGACAACGAAGTAGA 60.149 37.037 0.00 0.00 45.00 2.59
3329 4314 6.955963 GCTTTTGTATGATGACAACGAAGTAG 59.044 38.462 0.00 0.00 45.00 2.57
3330 4315 6.649141 AGCTTTTGTATGATGACAACGAAGTA 59.351 34.615 0.00 0.00 45.00 2.24
3332 4317 5.931532 AGCTTTTGTATGATGACAACGAAG 58.068 37.500 0.00 0.00 39.02 3.79
3333 4318 5.940192 AGCTTTTGTATGATGACAACGAA 57.060 34.783 0.00 0.00 39.02 3.85
3334 4319 5.700832 AGAAGCTTTTGTATGATGACAACGA 59.299 36.000 0.00 0.00 39.02 3.85
3335 4320 5.931532 AGAAGCTTTTGTATGATGACAACG 58.068 37.500 0.00 0.00 39.02 4.10
3336 4321 9.118236 GTAAAGAAGCTTTTGTATGATGACAAC 57.882 33.333 0.00 0.00 39.02 3.32
3337 4322 9.066892 AGTAAAGAAGCTTTTGTATGATGACAA 57.933 29.630 0.00 0.00 37.54 3.18
3338 4323 8.621532 AGTAAAGAAGCTTTTGTATGATGACA 57.378 30.769 0.00 0.00 0.00 3.58
3339 4324 9.548208 GAAGTAAAGAAGCTTTTGTATGATGAC 57.452 33.333 0.00 0.00 0.00 3.06
3340 4325 9.283768 TGAAGTAAAGAAGCTTTTGTATGATGA 57.716 29.630 0.00 0.00 0.00 2.92
3341 4326 9.897744 TTGAAGTAAAGAAGCTTTTGTATGATG 57.102 29.630 0.00 0.00 0.00 3.07
3386 4371 1.741770 GCCCGGTTCTGCACTAGTG 60.742 63.158 18.93 18.93 0.00 2.74
3387 4372 1.764571 TTGCCCGGTTCTGCACTAGT 61.765 55.000 0.00 0.00 37.18 2.57
3388 4373 0.392998 ATTGCCCGGTTCTGCACTAG 60.393 55.000 0.00 0.00 37.18 2.57
3389 4374 0.906066 TATTGCCCGGTTCTGCACTA 59.094 50.000 0.00 0.00 37.18 2.74
3390 4375 0.392998 CTATTGCCCGGTTCTGCACT 60.393 55.000 0.00 0.00 37.18 4.40
3391 4376 1.993369 GCTATTGCCCGGTTCTGCAC 61.993 60.000 0.00 0.00 37.18 4.57
3392 4377 1.748879 GCTATTGCCCGGTTCTGCA 60.749 57.895 0.00 0.00 35.27 4.41
3393 4378 1.748879 TGCTATTGCCCGGTTCTGC 60.749 57.895 0.00 0.00 38.71 4.26
3394 4379 1.376609 GGTGCTATTGCCCGGTTCTG 61.377 60.000 0.00 0.00 38.71 3.02
3395 4380 1.077716 GGTGCTATTGCCCGGTTCT 60.078 57.895 0.00 0.00 38.71 3.01
3396 4381 2.469516 CGGTGCTATTGCCCGGTTC 61.470 63.158 16.86 0.00 43.94 3.62
3397 4382 2.437716 CGGTGCTATTGCCCGGTT 60.438 61.111 16.86 0.00 43.94 4.44
3400 4385 2.437716 AACCGGTGCTATTGCCCG 60.438 61.111 8.52 17.41 45.75 6.13
3401 4386 2.469516 CGAACCGGTGCTATTGCCC 61.470 63.158 8.52 0.00 38.71 5.36
3402 4387 0.460635 TACGAACCGGTGCTATTGCC 60.461 55.000 8.52 0.00 38.71 4.52
3403 4388 1.326548 CTTACGAACCGGTGCTATTGC 59.673 52.381 8.52 0.00 40.20 3.56
3404 4389 1.931172 CCTTACGAACCGGTGCTATTG 59.069 52.381 8.52 0.00 0.00 1.90
3405 4390 1.741394 GCCTTACGAACCGGTGCTATT 60.741 52.381 8.52 0.00 0.00 1.73
3406 4391 0.179092 GCCTTACGAACCGGTGCTAT 60.179 55.000 8.52 0.00 0.00 2.97
3407 4392 1.216178 GCCTTACGAACCGGTGCTA 59.784 57.895 8.52 0.00 0.00 3.49
3408 4393 2.047560 GCCTTACGAACCGGTGCT 60.048 61.111 8.52 0.00 0.00 4.40
3409 4394 3.122971 GGCCTTACGAACCGGTGC 61.123 66.667 8.52 4.53 0.00 5.01
3410 4395 2.435410 GGGCCTTACGAACCGGTG 60.435 66.667 8.52 0.00 0.00 4.94
3411 4396 1.771783 AAAGGGCCTTACGAACCGGT 61.772 55.000 21.25 0.00 0.00 5.28
3412 4397 0.249955 TAAAGGGCCTTACGAACCGG 59.750 55.000 21.25 0.00 0.00 5.28
3413 4398 1.066645 ACTAAAGGGCCTTACGAACCG 60.067 52.381 21.25 5.60 0.00 4.44
3414 4399 2.353323 CACTAAAGGGCCTTACGAACC 58.647 52.381 21.25 0.00 0.00 3.62
3415 4400 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
3416 4401 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
3417 4402 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
3418 4403 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
3423 4408 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
3424 4409 2.044555 GGAACCGGCACTAAAGGGC 61.045 63.158 0.00 0.00 0.00 5.19
3425 4410 0.034477 ATGGAACCGGCACTAAAGGG 60.034 55.000 0.00 0.00 0.00 3.95
3426 4411 2.681344 GTTATGGAACCGGCACTAAAGG 59.319 50.000 0.00 0.00 0.00 3.11
3427 4412 2.681344 GGTTATGGAACCGGCACTAAAG 59.319 50.000 0.00 0.00 45.73 1.85
3428 4413 2.713877 GGTTATGGAACCGGCACTAAA 58.286 47.619 0.00 0.00 45.73 1.85
3429 4414 2.406596 GGTTATGGAACCGGCACTAA 57.593 50.000 0.00 0.00 45.73 2.24
3437 4422 5.922080 CACTTTAGTGCCGGTTATGGAACC 61.922 50.000 1.90 0.00 44.16 3.62
3438 4423 3.126343 CACTTTAGTGCCGGTTATGGAAC 59.874 47.826 1.90 0.00 39.39 3.62
3439 4424 3.340034 CACTTTAGTGCCGGTTATGGAA 58.660 45.455 1.90 0.00 39.39 3.53
3440 4425 2.980568 CACTTTAGTGCCGGTTATGGA 58.019 47.619 1.90 0.00 39.39 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.