>input_sequence_50583
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-------------------------------------ATAAGAACCGTGCGTAGAGAAGCCAAATACAGTAGCTGTATCG
CCAAGGAAAAATG---GTACTCGATCTGGTGCTACGATC-TTCATCCTACATTTGTTGTTGCTGACTGCACTTAGTT---
-TGATCTTACTTTCAAACTATGGCATTTGTTGCTGAAATGTTAACTAGGTCGACTGAGACCTGTTTCACCGTTCTAGCTG
TTCCACGAAGGTCGACTTCTTGATCATACCTGCGTTTTTGTAATGTAGGACGGTGAGAAGCAGATCAAGTTCATGACCTA
CAACGTCTGGTCCCGCGACGACGTTGTCGTCTACGAGCGGATGAAGGTGATCGGTGACCTCGTTCGGCAACATTCGCCGG
ACGTAATCTTCTTCCAGGTAA-------AAAAAAAACTCA--------GGTCAT-CGC---TACTGATTAGCCAGCT---
TAAATCAATTCTCATCCA--TCAACCA--T---CTAACTGTTCTTGGGATCGATGCCCAGGAAATCACGCCCTACATCCA
CTTGATCTTCGAAAGCTTCCCATGGTGGGACGACTACCACTGCTCACCAGTGCCCCCGGAAAAACAAACGGTGAACCATC
ACTTCTGCCTGATGGTACAATACGTCGGAAAC-----TTTTAGTTCCCGGTCCAAGAAATTTGTCTGATGCGGTGAATTA
ACGCAGAAGTTCTT------CT-T--------GCAGTTGAGCAAGCTTCCAATGGAGAGCTACGCGCGCTGGAAGTTTGG
CACTTCCCCGACTGGCAAGTGCTACCTAGAGGCCGATATTACCCCTGGA---------TCAATGAAGCCGATCCGCATCG
CCACTACGCAGCTCGAGTGCCCCATGCCACCGGCGTCGATGCACCTCAGGGATCGGTACATGCAGG-CCAAGCACGCCGT
CTCTGCGCTGAGCAGCGGGGACAACGTTGTGTTCGGTGGCGACATGAGC--TGGGACGACAAGGCCGACATGCCGTTCCC
TCTCCATGCAGGCTGGTGCGACGCCTGGGAAAAACTGAAATGTGGGACTGGAG---GTGAT-AGTTGGACGTACAGTAGT
TTGTGGGTGGAGAAGCCCCGGGAGTTCGGTGGCTTCGAATTCCCTCACCT------CTA---CAAGCGGTCAGACCGATT
TTTGTGCAAGCTACAAGACTACACTCTGGAAACAATTGAGCTGATCGGGGTTGGTCATCT---------------TGAGA
TATATTGTTACCATAAGGACCGCAGCAACGGCCACTTTAAGATAATGCCGAGTTGTCATCGTGGGTTGGTTCTCACAATC
GTCCCCAAGTGAGGTTTGTTGTTAAGTGCACAATGAAAGTTATATGCACCTGATCTGGATATCTGATGGGATTGCTTGCT
TTTCGTCACGGATGTCACCAGCATATTGGCATCAATGTATCCGAATAATTTTATTTCAGTAAATCATGCATCGAGGCTTA
ATTTGTAGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGGTCCCATACATGTATGCACTGTTCGGTTTTTGTTTCCC-ATCTAC
CACTTACCACAATGAACACCATTTTATTTA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_1_TraesCS3B01G521700
GTAGTACTACCTCCGTCCTGGTTTATTAGTCTCTTTAGTATTTTGTGCAAAATTTTAACCTTAGATTTAACTAAAAAATG
TTAAAGCATGTAACAAAAATAATATCTCTCAAAACTATGTTCAAATACGAATCCAGGGATATAATTTGTGCTAACATGTA
TTATTATTTACTAAGTCAAATCGATGGTCAAAGTTGGGCACAAAATACTATGGGGACCAATAAACCAGGACGGAGGTAGT
ATGTGTCATTGATACGGAAGGACAATGGCGGATAGGAAAGACCACATATGTTGTCCTAGAAGAGTACAGGAAGAAGATTT
TATGATTAATTATTGGAGGACGTTGTCGATGACAATAAATAAATAGGGCAAAATGTGATCTCTCTAAACCATATTATTTT
TTGCAAATAATCCATTTAATTACCAAGCAGTCTGCTCATGAGGATGGAAGTTCAACCTGAATGAAGGATGCCCTCAATCC
ACAAACAACACTTTAGTGGGGTCACTGGGGTGTCTACATTATTGTTGCATAGCAGCAGCCTCCCCTTAACAAAGTGATCT
AACTGACTAAGGTTATCAATCTTCAAAATGTAATGCGTAGAATAA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTCTCCTTTCTATTATATATCTACCCCAAAATAGATACAAATACTGC----TTAGTTATATA
TAACACGCGTGGTGTAATACACTTATTTACAACACGTTGACATACATGAATGGTGCACCTCCAAAGTTGTTTAGTCACCC
ATCTCTCATGCTTCCATGCGTACGTGACAGCATCATAGCGCTGTACTACTTCTGTTGAAGCTCAAACGACAGGTAGTATT
CC-TAGTGCGTGTATTAATTCAATCATCGATC-GGTTGGTGGCAGTCAATACATCCTTTCGTGTTCCGTCTCCATGACTT
TTCTTTGGTTA-----TGCGGCCTA---CGCCACTTCGTTTCTCACGATGCCATTAAGCCTGAACCAGCACACGACTATA
TATACGATAA----------TACTAGTACTCCAAAGGATAAGAACCGTGCGTAGAGAAGCCAAATACAGTAGCTGTATCG
CCAAGGAAAAATG---GTACTCGATCTGGTGCTACGATC-TTCATCCTACATTTGTTGTTGCTGACTGCACTTAGTT---
-TGATCTTACTTTCAAACTATGGCATTTGTTGCTGAAATGTTAACTAGGTCGACTGAGACCTGTTTCACCGTTCTAGCTG
TTCCACGAAGGTCGACTTCTTGATCATACCTGCGTTTTTGTAATGTAGGACGGTGAGAAGCAGATCAAGTTCATGACCTA
CAACGTCTGGTCCCGCGACGACGTTGTCGTCTACGAGCGGATGAAGGTGATCGGTGACCTCGTTCGGCAACATTCGCCGG
ACGTAATCTTCTTCCAGGTAA-------AAAAAAAACTCA--------GGTCAT-CGC---TACTGATTAGCCAGCT---
TAAATCAATTCTCATCCA--TCAACCA--T---CTAACTGTTCTTGGGATCGATGCCCAGGAAATCACGCCCTACATCCA
CTTGATCTTCGAAAGCTTCCCATGGTGGGACGACTACCACTGCTCACCAGTGCCCCCGGAAAAACAAACGGTGAACCATC
ACTTCTGCCTGATGGTACAATACGTCGGAAAC-----TTTTAGTTCCCGGTCCAAGAAATTTGTCTGATGCGGTGAATTA
ACGCAGAAGTTCTT------CT-T--------GCAGTTGAGCAAGCTTCCAATGGAGAGCTACGCGCGCTGGAAGTTTGG
CACTTCCCCGACTGGCAAGTGCTACCTAGAGGCCGATATTACCCCTGGA---------TCAATGAAGCCGATCCGCATCG
CCACTACGCAGCTCGAGTGCCCCATGCCACCGGCGTCGATGCACCTCAGGGATCGGTACATGCAGG-CCAAGCACGCCGT
CTCTGCGCTGAGCAGCGGGGACAACGTTGTGTTCGGTGGCGACATGAGC--TGGGACGACAAGGCCGACATGCCGTTCCC
TCTCCATGCAGGCTGGTGCGACGCCTGGGAAAAACTGAAATGTGGGACTGGAG---GTGAT-AGTTGGACGTACAGTAGT
TTGTGGGTGGAGAAGCCCCGGGAGTTCGGTGGCTTCGAATTCCCTCACCT------CTA---CAAGCGGTCAGACCGATT
TTTGTGCAAGCTACAAGACTACACTCTGGAAACAATTGAGCTGATCGGGGTTGGTCATCT---------------TGAGA
TATATTGTTACCATAAGGACCGCAGCAACGGCCACTTTAAGATAATGCCGAGTTGTCATCGTGGGTTGGTTCTCACAATC
GTCCCCAAGTGAGGTTTGTTGTTAAGTGCACAATGAAAGTTATATGCACCTGATCTGGATATCTGATGGGATTGCTTGCT
TTTCGTCACGGATGTCACCAGCATATTGGCATCAATGTATCCGAATAATTTTATTTCAGTAAATCATGCATCGAGGCTTA
ATTTGTAGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGGTCCCATACATGTATGCACTGTTCGGTTTTTGTTTCCC-ATCTAC
CACTTACCACAATGAACACCATTTTATTTACGCCCCAACTCATCTTTGCCACTGCCCAAGCTGTGGTCGGATGGTTAGGA
CATTAGTATCTCCAGCCCATCAGGTTCAAGTCCTGCTGCTCGCATATTCCTGAATTTATTTATTTCAGGAATTTCGGCGA
TGCTTTTTCAGTGTGAGAAGACGTTTCCATCGACTACAAGGTGCCTCTGGTGACTTCTTCAATCTTAAGATAATATGTTG
ATCGGCTGAGTCTCTCGGATGTGCTCATAGAGGTAGGGTGTGCGTGTGTGTGTTCATAGGGGTGAGTGTACCTGTGTATA
TATGAGCACCTGTGTTTGTCTGTGTTATACAAAAAAA----CTCATCTTTGTCGTGCTCTTGGGTACTCCCTCCAGTATT
TGCATCAAAAGCTGACCATGAATTTGGTTAGCAAAATATAGGTTATATCTATTAGTTAGATTCACATCTAATTTTTTTAA
AGTAATTTTTGTTATATACACCCATCGTTCTAAAATGTACAGTGTATAAGTTTTTATTTAAGTCAAACATATTCATGTTT
GACCAAGTTTTTAGATAAAAATATCAATATCTACAGTATCATGATGAAATACGTTGAAATGCGACCTGTGTGAAAAAAGA
--------------------------------------------------------------------------------
-----------------------CAAATTCATGGCTTGGAAGGATGAATAGTATCATGTGTTAAATAGCCCCGGGTT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGTCTTTCTTGCACAACCCTCATTTCAACGTATTTTGCCCTGAAA
ATTTACACATATGTGTATTATGCCTTCATGTATATCTGTACTATTTTTTAGAATTGTTTGAAATGTAAAAATATGAATTA
CAATTAAATTTGAATTTTGAATCTGAAGGCCTCCAGTGAGCTCGGTCACCAAAGTCAGTTTCCGGGCGAAAGTCTACTTC
GTTGTCATCATACAAAAGCTTCTTTACTTCAATACATGTCCAGCTCATAACACTAGTGCAGAACCGGGCAATAGCACCGG
TTCGTAAGGCCCTTTAGTGCCGGTTCCATAACCGGCACTAAAGTGTGGGCACTAA
>chr3D_236
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTAGT
ATGTGTCATTGATACGGAAGGACAATGACGGATAGGAAAGACCACATATGTTGGCCTAGAAGAGTAGAGGAAGAAGATTT
TATGATTAATTC--GGAGGACGTTGTCGATGACACTAAATAAATAGGGCAAGATGTGATCTATCTAAACCATATTATTTC
TTGCAAATAATCCATTTAATTACCAAGCAGTCTGCTCATGAGGATGGAAGTTCAACCTGAATGAAGGATGCCCTCAATCC
ACGAACAACACTTTAGTGGGGTCACTAGGGTGTCTACATTA---------------------------ACAAAGTGATCT
AACTAACTAAGGTTATCAATCTTCGAAAAGTAATACTCCCTCCGTCTAGGTGAGTAAGTCATCTTAGGTTGTGCACCGTG
ACCAAGGAGAAGGAGAAAACGAGAAATCTTAATGTTTATTTGCTAATTAATAGCATTGCATGCAATGAACTAACCACTGC
ATGTCGTGTTTGGTAGTCTCAAGTTATTAAAAGCATGCACACCCCTCATCTCTTATTGGTTGATATGTCAAGAAACAAGA
AACGAGGTAGAAGTTAATGCACCGCGCCTTAGTGTTTTGGGATTATTTGGTTTTCGTAAGATGACTTACACACCTAGATG
GAGGGAGTACGTAGAGTGGTCTCCTTTCTTTTATATATCTACCCCAAAATAGATACAAATACTGCTTAATTAGTTATATA
TAACGCGCGTGGTGTAATACACTTATTTACAACACGTTGACATGCACGAATGGTGCACCTCCAAAGTTGTTTAGTCACCC
ATCTCTCATTTTTCCATGGGTACGTGACAGCATCATAGCACTGTACTACTCCTGTTGAAGCTCAAACGACAGGTAGTATT
CCCTAGTGCGTGTATTAATTCAATCATCCATC-G-TTGGTGGCAGTCAATGCATCCTTTCGTGTTCCGTCTCCATGACTT
TT-TTTGTGTA-----TGCTGCCTA---CGCCTCTTCGTTTCTCACGATGCCATTAAGCCTGAACCAGCACATGGCTATA
TATACGATAAGA--------TACTAGTACTCCAAAGAATCAGAACTCTGCGCAGAGAGGCCAAATACAATAGCTGTATCG
CCAAGGAAAAATGGTAGTACTCGATCTGGTGCTACGATCGTTCATCCTACATTTGTTGTTGCTGACTGTACTTGGTT---
-TGATCTTACTTTCAAACTATGGCATTTGTTGCTGAAATGTTAACTAGGTCGACTGAGATCTGTTTCACCTTTCTAGCTG
TTCCACAATAGTCAACCTCTTGATCATACCTGCGCTTTTGCAATTTAGGACGGTGAGAAGCAGATCAAGTTCATGACCTA
CAACGTCTGGTCCCGCGAGGACGTTGTCGTCTACGAGAGGATGAAGGTCATCGGTGACCTCGTTCGGGAACATTCGCCGG
ACGTAATCTTCTTCCAGGTAA-------AAAGAAAACTCACTATTACTGGTCAT-CGC---TACTGATTCGCCTGCG---
TAAATCCATTCTCATCCA--TCGATGA--T---CTAACTGTTCTTGGGATCGATGCACAGGAAATCACGCCCTACATGCA
CTTCATCTTCGAGAGCTTTGCATGGTGGAAGGACTACCACTGCTCACCAGTGCCCCCGGGAGAACAAACGGTGAACCATC
ACTTCTGCCTGATGGTACAATAC-TCGGAAAT-----TTTCAGTTCCCCGTCCTAGAAATTTGTCTGATCCGGAGAATTA
ACGCAGAAATTCTG-------T-C--------GCAGCTGAGCAAGCTTTCAATGGAGAGCTATGCGCGCTGGGAGTACGG
TACTTCGCCGACCGGCAAGTGCTACCTAGAGGCCGACATTACCCCTGGA---------TCAATGAAGCCGATCCGCATCG
CCACTACTCAGCTCGAGTGCCCCGTGCCACCGGCGTCGATGCACCTCAGGGATCGGTACATGCAGG-CCAAGCACTCCGT
CTCCGCGCTGAGCAGCGGGGACAACGTTGTGTTCGGTGGCGACATGTTCGGTGGGACGACAAGGCCGACATGCCGTTCCC
TCTCCCTGCAAGATGGTGCGACGCCTGGGAAAAACTGAAATGTGGGACTGGAG---GTGAT-AGTTGGACGTACAGTAGT
TTGTGGGTGGAGAAGCCCCGGGAGTTCGGTGGCTTCGAATTCCCTCACTT------CAA---CAAGCGCTCAGACCGACT
TTTGTGCAAGCTACAAGACTACACTCTGGAAACAATTGAGCTGATCGGGGTTGGTCATCT---------------TGAAA
TATATTGTTACCATAAGGACCACGGCAACGGCCACTTGAAGATAATGCCGAGTTGTCATCGCGGGTTGGTTCTCACAATC
GTCCCCAAATGAGGTTTGTTGTTAAGTGCACAATGAAAGTTACATGCACCTGATCTGGATATCTGATGGGATTGCTTGCT
TTTCGCCACGGATGTCACCAGCATATTGACATCTATGTATCCGAATAATTTTATTTCAGTAAATTATGCATCGAGGCTTA
ATTTGTACAGTTTGTCTAATTCACATCTAGATTTTTTTTAAGGATGTCACATCTAAGCTTTCACAAATATATGATGCAAC
AATAAAAAACAAAAACTAGAAAAAAAATAGACCACAAACAAAGTGAACATCAGTTTAGATGTGACATAACTAGTCACATC
TAGACGTGTCCTAGACAGACCCTAATTTGTATATGGTCCCATACATGTATGTATTGTTCAGTTTTTGTTTCCCAATCTAC
CACTTACCACAATGAACACCATTTTATTTACGCCCCAACTCATCTTTGCCGCTACCCAAGTTGTGGTTGGATCGTTAGGA
CAATAGTATCTTGGGCCCATCAGGTCCAAGTCCTGCTGCTCGCATATTCTTGAATTTATTTATTTCGGGAATTTCGGCGA
TGCTTTTTCAGTGTGAGAAGATGTTTTCGTCGATTGCAAGGTGCCTCAGGTGACTTCGTCAATCTTAAGATAATATGTCG
ATCGGCTAAGTCTCTCGGATGTGCTCATAGAGGTAGGGTGTGGGTGTGTGTGTTCATAGGGGGGAGTGTACCTGTGTATA
TATGAGCACCTGTGTTTGTCTGTGTTATACAAAAAAAAAAACTCATCTTTGTCGTGCTCTTGGGTACTCCCTCCTGTATT
TACATCAAAAGTTGACCATGAATTTAGTTAGCAAAATACAAGTTATATCTATTAATTAGATTCACATCTAATTTTTTTAA
A-TAATTTTTGTTATATACACCCATCGTTCTAAAATGTTCGGTGTATAAG-TTTTTTTAAAGTCAAACATATTCATGTTT
GACCAAGTTTTTAGATAAAAATATCAATATCTACAGTACCAAATTTGTATCATTAGATTCATCGTGAAAAGAAATTTCAT
ATTTATTTAATTTGTTTTGTAGATGCTGATGTTTTTCTATAATCTTGATCAAACATTCATAAGTTTGACTTACACGAAAA
TAATTCAACTATAATGTGTTGATCAAATTCATGGTTAAAATATGACCCAAAATACAAGTGATCCTTACGTGCAGGGTACC
TCTTAAATTGCCGAACACATGTAAGTTGTGTCAGACCGATTTTTTGTGCAAACTTCAAGACTACACTCTGGAAACAATCT
TGATATTTATTGTATGAAGGACAGCAGCAACTACTTGACGGTGAAGC---------CGAGTTGCCACCGCGGGTTGGTTT
TGACCATCGTCCCCAAATGAGCTTTCGTAAGTGCACAGCATGATCTTCGAAAAATAATAGTGCTCGGTGAAAACTACGCC
CACTTGATCTGGATATCAAATCATGCATGGATGCTGATGCGGTCTATCCATTTATGCACTTTCTTTAGGCCCCAGTCCAT
CTTTTGTTGTACTCTAATGACCTCTTATATTGCCGAATCCATGAGGTTGTGCCACCGGGTGTAATTGTTCATCAT-----
--------------------------------------------------------------------------------
------ATCATACAAAAGCTTCTTTACTTCAATACATGTCCAGCTCATAA------------------------------
-------------------------------------------------------
>chr3B_777
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------CATAGCACTGTACTACTCCGGTTGAAGCTCAAACGACAGGTAGTATT
CCCTAGTGCGTCTGTTAATTCAATTATCGATC-GGTTGGTGGCAGTCAATGCACCCTTTCGTGTTCCGTCTCCATGACAT
TTTTTT--GGTATTCCTACTGCCTAGGCCGCCTCTTCGTTTCTCACGATGCCATTAAACCCGAACCAGCACACGGCTATA
TATACGATTATACTCC----TACTAGTACTCCAAAGAATCAGAACTCTGTGTGGAGAAGCCAAATACATTAGCTGTATCG
CCAAGGAAAAATG---GTACTCGATCTGGTGCTACAATCGTTCATCC--CTTTTTTTGTTGCTGACTGTAGTTTCTTAGG
TTGACCTTAATTTCAAACTATAGTATTTGTTGCTGAAATGTTAATAG-GTTGATTTGGTCTTGTTTCACTGTTCTAACTC
TTCTACAAAGGTTGACTTCTTGATCATACCTGCGTTTTCGTAATTTAGGACGGCGAGAAGGGGATCAAGTTCATGACCTA
CAACGTCTGGTCCCGCGAGGACGTTGCCGTCTACACGAGGATGAAGGCCATCGGCGACCTTGTTCGGGATGATTCTCCGG
ACGTAATCTTCTTCCAGGTAA-------TAAAA---CTCATGATTATAGGTCATGCGC---CACTCGTTCACCTGCT---
TAGATCCATTCTCATCCA--TCGATCA--TTTTTTAACTGTTCTTATGATCCATGCACAGGAAGTCACGCCGTACATTCA
GTCGATCTTCGAGAGCTTCCCATGGTGGGAGGAGTACAACAGCTCACCAGTGCCCCCCGAGGAACAAACGGGGAACCACC
ACTTCTGCCTGATGGTAC-TG----------CTCTCATTTCAGTTCCCGCCCTAG--AAATGGTTTGATCCGGTTAACTG
ACGTAGAAGCTCAT------CA-TTATTTGTGGCAGCTGAGCAAGCTTCCAATGGAGAGGTACGCGCGCTGGAAGTTCGC
CACTTCCCCGACAGGCAAGTGCTACCTGGAGGCCGACATTACCCCTCGAAAT---------ATGTACCCGATACGCATCG
CCACGACCCATCTTGAGTGCCCCGTGCCACCGGCGTCGATGCACCTCAGGGATCGGTACATGCAGG-CTAAGCATGTCGT
CTCCGCGCTCAGCAGCGCCGGCAACGTCGTGTTCGGCGGCGACATGAGC--TGGGACGACGACGCCGACCTGCCATTCCC
CCTCCCCGAAGGCTGGGGCGACGCCTGGGTGAAGCTGGGACGTTCGACTGCTTTGAGTCAT-AGTTGGACCTACAGTAGT
TTCTGGGTGGAGAAGCCCCGGGAGTTCAATGGCCACAAATTCCCTAGCTA------CTCCGGCAAGCGGTCTGACCGATT
TGTGTGCAAGCTACAGGACTACACAGTGAAAACTATCGGGCGGATCGGGGGAGATAATCT---------------TGGGA
TTTATTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACGAAGGACAGCGTAGAATCCTTGCCGATTATGC---------CTAGTTGTCACCGCGGGTTGGTTC
TGACCATCGTCCC-AAATGAGCTTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATCATCCATCGG-TTGGTGCCAGTCAATGCATCCTTTCGTATTCCGTCTCCAAGACTT
CTTTTTTGGGTATTCCTGCTGCCTAGGCCGCCTCTTCGTTTCTCACGATCCCATTAAGCCTGAACCAGCACACGGCTATA
TATATACACATGATAATACTTACTAGTACTCCAAAGGATCAGAACTCTGTGTAGGGAAGCCAAAGACAGTAGCCGTATCG
ACAAGAAAAAATG---GTACTCGGTCTGGTGCTACGATCTTCCATCC--CATTTTTTGTTGCTGACTGTACTTGCTTAAT
TTGACCTTACTTTCAAACTGTGGTATATGTCGCTGAGATGTTAGCTATGTTGATTTGGTCCTGTTCCACCGTTCTAGCTG
TTCCACAAAGGCTGAGTTCTTGATCATACCTGCGATTTTGTCATTTAGGACGGTGAGATGCAGATCAAGTTTATGACCTA
CAACGTCTGGTCCCGCGACGACGTTGTCGTCTACGAGAGGATGAAGGTGACCGGTGACCTCGTTGGGCAACATTCGCCGG
ACGTAATCCTCTTCCAGGTAA-------AAT--AAACTCATGAGTACTGCTCAT-CGC---TAGTGATTCGCCTGCT---
TAAATCCATTCTCATACA--TCCATCA--T---ATAATTGTACTTGGGATCGATGCCCAGGAAATCACGCCCTACATCCA
CTCGATCTTCGAGAGCTTCCCATGGTGGAAGGACTACCACTGCTCACCAGTGCCCCCGGAAGAACAAACGGTGAACCATC
CCTTCTGCCTGATGGTACAATAC-TCGGAAAT-----TTTTAGTTCCCAGTCCAAGAAATTTGTCTGATCCGGTGAATTA
ACGCAGAAGCTCTT------CTGT--------GCAGCTGAGCAAGCTTCCAATGGAGAGCTACGCGCGCTGGAAGTTTGG
CACTTCCCCGACTGGCAAGTGCTACCTAGAGGCCGACATTACCCCTGGA---------TCAATGAAGCCGATCCGCATCG
CCACTACGCAGCTCGAGTGCCCCGTGCCACCGGCGTCGATGCACCTCAGGGATCGGTACATGCAGGTCCAAGCACGCCGT
CTCCGCGCTGAACAGCGGGGACAACGTTGTGTTCGGTGGTGACATGAGC--TGGGACGACAAGGCCGACCTGCCGTTCCC
CCTCCCCGAAGGCTGGGGCGACGCCTGGGGAAAGCTGAGGCGTGGGACTGCTGAGAGTGAT-AGTTGGACCTTCTGTAGT
TTGTGGGTGGAGCAGGCCCGGGATTTCAATGGCTACAAATTCCCTAACTTAG-------------GCGGTCGGACCGATT
TGTGTGTAAGCTACGAGACTACACACTGAAAACAATTGAGCTGATCGGGGGAGGTCATCT---------------TGAAA
TTTATTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACGAAGGACAGCAGCCACTACGTAAGGATGGTGC---------CGAGTTGTCACCGCGGGTTGGTTC
TGACCATCCTCCC-CAAATGAGGTTTTG---TA-------------------------AGTGCACGATGAATGTTATGTG
CACCTGATCTGGATATCTGATGACATATTGCTTGCTGTTTTTCTTGGATGTCACCAGCACATAGGTATCCATAGATCCGA
ATATTATTATTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chrUn_1217
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GATCTTACCTACATTTTCGTAATCTAGGATGGGAAGAGGGAGATCAAATTCATGACCTA
CAACGTCTGGTCCCGCGAGGACGTCGTCC-----------------GCCATCGGTGACCTCGTTCAAGAACATTCGCTGG
ACGTAATCTTTTTCCAGGTAA-------TAAAAA--CTCACGGTTATTGTTCATGTGCTAGTATTGATTCATGTGCT---
AAATTCCATTCTCAGA------GTTCA--T---TTAGATGTTTGTGGGATCCATGGCCAGGAGATCACGCCGTACATCCA
CTCGATCTTCGAGAGTTTTGCATGGTGGGAGGGCTACCACTGCTCACCAGTGCCCCCAGAAGGACAA-------------
--TTCTGCCTGATGGTAC-TGGTACATACTACTATCAGTCCAGTTGCCAGTCCTAGAAATTGTT-----TCAGTGAATTA
ACGCAGAAGCTCATTTGTCGCT-T--------GCAGCTGAGCAAGCTTCCATTGGAGAGCTACGCGCGCTGGAATTTCTG
CACTTCGCCTACAGGCAAGTGCTACCTGGAGGCCGACATTACCCCTCGG---------TCAATGAAGCCAATCCGCATCG
CCACGGCCCAGCTCGAGTGCCCCGAGCCGCCGGTGTCGATGCACCTCCCGGAGCGGCACATGCAGG-CCAAGCATGCTGT
CTCCGCGCTGAACAGCGCAGACAACGTCGTGCTGGGCGGCGACATGAGC--TGGGATGATGACGCGGATCTGCCATTCCC
TCTCCCCGCAGGCTGGTGCGACGCCTGGGCGGAACTGAAATATGAGACTGGGACTAAAAAACAGTTGGACTTACGATAGT
TTCTGGGTGGAATAGCTAGGGGAGTTGAATGGCCACAAAGTCCCTGACTCATGGATGAA---GAAGCGGTCAGATAGATT
TGTGTGCAAGCTACAAGACTACACACTGATAACCATCGGTCTGATCG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3A_1217
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GATCTTACCTACATTTTCGTAATCTAGGATGGGAAGAGGGAGATCAAATTCATGACCTA
CAACGTCTGGTCCCGCGAGGACGTCGTCC-----------------GCCATCGGTGACCTCGTTCAAGAACATTCGCTGG
ACGTAATCTTTTTCCAGGTAA-------TAAAAA--CTCACGGTTATTGTTCATGTGCTAGTATTGATTCATGTGCT---
AAATTCCATTCTCAGA------GTTCA--T---TTAGATGTTTGTGGGATCCATGGCCAGGAGATCACGCCGTACATCCA
CTCGATCTTCGAGAGTTTTGCATGGTGGGAGGGCTACCACTGCTCACCAGTGCCCCCAGAAGGACAA-------------
--TTCTGCCTGATGGTAC-TGGTACATACTACTATCAGTCCAGTTGCCAGTCCTAGAAATTGTT-----TCAGTGAATTA
ACGCAGAAGCTCATTTGTCGCT-T--------GCAGCTGAGCAAGCTTCCATTGGAGAGCTACGCGCGCTGGAATTTCTG
CACTTCGCCTACAGGCAAGTGCTACCTGGAGGCCGACATTACCCCTCGG---------TCAATGAAGCCAATCCGCATCG
CCACGGCCCAGCTCGAGTGCCCCGAGCCGCCGGTGTCGATGCACCTCCCGGAGCGGCACATGCAGG-CCAAGCATGCTGT
CTCCGCGCTGAACAGCGCAGACAACGTCGTGCTGGGCGGCGACATGAGC--TGGGATGATGACGCGGATCTGCCATTCCC
TCTCCCCGCAGGCTGGTGCGACGCCTGGGCGGAACTGAAATATGAGACTGGGACTAAAAAACAGTTGGACTTACGATAGT
TTCTGGGTGGAATAGCTAGGGGAGTTGAATGGCCACAAAGTCCCTGACTCATGGATGAA---GAAGCGGTCAGATAGATT
TGTGTGCAAGCTACAAGACTACACACTGATAACCATCGGTCTGATCG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_1236
TAAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TAGGACGGCAAGATGCAGATCAAGTTCATGACTTA
CAACGTCTGGTGCCGCGAAGACGTTGTCGTCCACAAGAGGATGAAGGCCATCGGCGAACATGTTCGGAAACATTCGCCGG
ACGTAATTTTCTTCCAGGTAA-------AAA-----CTCACGATTACTGGTCATGTGC---TATTCATTCGCCTCCA---
TAAATCCTTTCTCGATCGTCTCGGTCA--T---CTAACTGTTCCTCCGACCGATGATCAGGAGGTCACGCCGTACATCCA
CTCGATCTTTGAGAGCTTCGCATGGTGGAAATCCTATCACTGTTCACCGGTGCCCCCGGAAGATCAAACGGGGAACCGCC
ACTTCTGCTTGATGGTAC-TCC-------------CAGTTCAATTCGCTGTCCTAGAAATTGTT-----T-GGTGAACTA
ACGCAGAACCTCAT------CA----TTTGTCGCAGATGAGCAAGCTTCGTCTGCAGGGCTACGCGCGCTGGAAGTTCGG
CACTTCGCCTACGGGAAAGTGCTACCTGGAGGCAGACATTACGCCTGGACCGGCTTCTTCAACGCAGCCAATCCGCATAG
CCACCACCCAGCTCGAATGCCCAGTACCGCCTGAATCGATGCACCTCCGGGAGCGCTACATGCAGG-CAAAGCATGCGGT
CTCAGCGCTGAGTAGCGCTGACAACGTTGTGTTCGGCGGCGACATGAGC--TGGGATGATGATGCCGACTTGCCGTTCCC
CCTCCACAATGGCTGGTTCGACGCCTGGGCAAAACTGACATGTGGAACTGACAGTTACAGCG-GTTGGACTTGTGATAGT
TTCTGGGTGGAAAAGCTCGGGGAGTTCAATGGCCACATAGTACATGAACCATGGACGAA---GAAGCGGTCAGACCGATT
TTTGTGCAAGCTGCAAGACTACACGCTGAAGACAAT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_1236
TAAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TAGGACGGAAAGAAGCAGATCAAGTTCATGACTTA
CAACGTCTGGTGCCGGGAGGACCTTGTCGTCCACAAGAGGATGAAGGCCATCGGCGACCTCGTTCAGGAACATTCGCCAG
ACGTCATCTTCTTCCAGGTGAGAAAAAGAAA-----CTCACGATTGATGGTCATGTGC---TATATATTGATTCGCCTGC
TAGATCCATTCTTACT------GATCATGT---TTCATTGTTCTTGGGACCGATGGCCAGGAAATCACACCGTACATCCA
CTCGATCTTCGAGAGCTTCGCATGGTGGAAGGACTACCACTGCTCACCAGTGCCCACAGAAGGCCAA-------------
--TTCTGCTTGATGGTACATT----------CTATAAGTTCAGTTCAAGTCCTTC--AAATTATTAAACTCGGTGAACTA
ATGCGGAAGCTCATTTGCCGCT-C--------GCAGCTGAGCAAGCTTCGAATGGAGAGCTACGCGCGCTGGAAGTTTGG
CACTTCGCCGACGGGCAAGTGCTACCTGGAGGCAGACATTGTCCCTGGACCGCCTTCTTTGATGAAGCCGATCCGCATCG
CTACGACCGAGCTCGAGTGCCCCGTGCCGCCGGCGTGGATGCACCTCAGGGAGCGCTACACGCAGG-CAAAGCACGCGGT
CTCGGCGCTGAGTAGCGCGGATAATGTCGTTCTGGGCGGCGACATGAGC--TGGGATGATGATGCCGACTTGCCGTTTCC
GCTCCCTGGAGGCTGGTGTGACGCCTGGGAAGAACTAATCCGTGAGCGTGGGAGTTACT-ACAGTTGGACTTATGATAGT
TTCTGGGTGGAAAAGGTATGGGAGTTCAATGGCCACATAGTCCATCGACCATGGACCAA---GAAGCGGTCAGACCGATT
TGTGTGCAAGCTGCAAGACTACACGCTGAATACGATCCAGCTGATCGAGGGAAATCATGGTTTTGAGGCTTTTGGTCGTA
TTCGTTGT------------------------------------------------------------------------
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-------------ACGAACTACACGACATGCAACCACGAAGACCTGGCGCTACACGCGAGCTGTCACCGCGGGCTGGTTC
TGACCATCGTCCC-CAAATGATATTTCGTACTA-------------------------AGTGCCCAATGAAAGTTATGTC
CACCTGATCTTAATGTGTGATGACAATTTGTTGGCTTTTTGTTTTGGATGTCACCAGCATATTGGCATCAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------------------------S-------------------------S------------S-------------
-----------SSS--------------------S----------------S---------S-----------------S
--------------------------------------------------------------------------------
--S-----------------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSS------------
----S-------------------S---S-----S-SSSSSSSSS-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
----S--------------------------------------S--S---------------------------------
---------SS-------S--------------------S----------S-----------------------------
--------------------------------------------------S-----------------------------
--S-----S----------S------------S-----------------------------------------S-----
---------------------------------------S-----SS---------------------------------
--------------------------------------------------------------------S----S------
--------------------------------------------------------------------------------
------S-------------------------------------S-----------------------------------
-------------------------------------S------------------------------------------
---------------------------------------------------------------------S---S------
------S---------------S-S-------------------------------------------------------
------------S-----------------S------------------------------S------------------
-----------------------S---------------------------------------------S----------
------------------------------------S-------------------------------------------
------------------------------------S-------------------------------------------
-----------------------S--------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S-S-------------S-----------------------S------------------
--------S---------------------------------S-------------------------------------
-----S----------------------S----S------------------------------S---------------
-------SS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-S-----S--------------------
--------------------------------------------------S--S------S------S----S-------
--S--------SSS-----------S-----------------------S----------------S-------------
---------------------S----S-S----S-S-----------S---------S--------------------S-
-------S----------------------------------S-------------------S-----------------
--------------------------------------------------------------------------S-----
-S---------S-------------S------------S-S-------------S-------------------------
-S------------------------------------S-S---------S----S--S---------------------
--------------------------------------S--SSS-SSS--SSS-S--SSSSSSSSSSSSSSS--SSSSSS
--------------------------------------------------------------------------------
----------------------------------S-SSS-SSSSSSSSS-SSSS--S---S-SSS--SSSS-S--S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-------S---S-S--SSSS-SS-S----SSSS-SS-SS--
----SSSS----SSSS--S-SSS---SSSS-SSSSSSSSSS-SSSS--SS-SSSSSSSSSSS-SS-SSSS--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_200
--------------------------------------------------------------------------------
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--------------------TCGATGGTCAAAGTTGGGCA----------------------------------------
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-------------------------------------------------------
>reverse_1871
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------------------------------CGACTACCACTGCTCACCAG------------------------------
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>forward_1527
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-------------------------------------------------------------------ACCGTTCTAGCTG
TTCCACG-------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_3132
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-----------CCAGCCCATCAGGTTCAAGT-------------------------------------------------
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-------------------------------------------------------
