Multiple sequence alignment - TraesCS3B01G495100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G495100 chr3B 100.000 3701 0 0 1 3701 739328188 739324488 0.000000e+00 6835.0
1 TraesCS3B01G495100 chr3B 79.167 144 20 7 2844 2978 451404696 451404838 1.420000e-14 91.6
2 TraesCS3B01G495100 chr3D 92.158 2818 191 12 7 2814 556855706 556852909 0.000000e+00 3952.0
3 TraesCS3B01G495100 chr3D 82.613 1133 177 6 1665 2797 556622567 556621455 0.000000e+00 983.0
4 TraesCS3B01G495100 chr3D 82.274 818 123 12 1 801 556626839 556626027 0.000000e+00 688.0
5 TraesCS3B01G495100 chr3D 95.699 279 11 1 3298 3575 556852639 556852361 7.290000e-122 448.0
6 TraesCS3B01G495100 chr3D 88.306 248 17 5 2862 3107 556852899 556852662 1.680000e-73 287.0
7 TraesCS3B01G495100 chr3D 77.157 394 60 19 434 807 556635444 556635061 6.270000e-48 202.0
8 TraesCS3B01G495100 chr3D 81.098 164 27 4 2824 2987 593235171 593235012 1.080000e-25 128.0
9 TraesCS3B01G495100 chr3D 73.882 425 62 26 1085 1501 556610899 556611282 1.400000e-24 124.0
10 TraesCS3B01G495100 chr3D 78.659 164 25 5 2824 2978 47711946 47712108 2.350000e-17 100.0
11 TraesCS3B01G495100 chr2A 81.765 170 25 3 2824 2987 8042548 8042379 1.790000e-28 137.0
12 TraesCS3B01G495100 chr7D 81.818 165 18 4 2835 2987 64007141 64007305 1.080000e-25 128.0
13 TraesCS3B01G495100 chr4B 82.734 139 16 5 2850 2982 612876272 612876136 2.340000e-22 117.0
14 TraesCS3B01G495100 chr5D 85.849 106 14 1 3597 3701 548292719 548292614 1.090000e-20 111.0
15 TraesCS3B01G495100 chr5D 79.070 172 27 4 2824 2987 456039597 456039767 3.910000e-20 110.0
16 TraesCS3B01G495100 chr6D 77.907 172 30 6 2824 2987 419484812 419484641 2.350000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G495100 chr3B 739324488 739328188 3700 True 6835.000000 6835 100.000000 1 3701 1 chr3B.!!$R1 3700
1 TraesCS3B01G495100 chr3D 556852361 556855706 3345 True 1562.333333 3952 92.054333 7 3575 3 chr3D.!!$R4 3568
2 TraesCS3B01G495100 chr3D 556621455 556626839 5384 True 835.500000 983 82.443500 1 2797 2 chr3D.!!$R3 2796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 87 0.980231 GTGGATGAGGCTCTGGAGGT 60.980 60.0 16.72 0.0 0.00 3.85 F
1011 3619 0.248296 GCGACGAGATGAGTCACTCC 60.248 60.0 1.24 0.0 38.46 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 4261 0.396435 AACTGGAGCCAACATCGTCA 59.604 50.0 0.00 0.0 0.00 4.35 R
2817 5503 0.175073 GCCGACCGAGACTTGGTTAT 59.825 55.0 15.92 0.0 40.63 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 31 1.069765 GCCCGATGGTGATGACGAT 59.930 57.895 0.00 0.00 0.00 3.73
42 46 1.482593 GACGATGGACTCAAGGTGGAT 59.517 52.381 0.00 0.00 0.00 3.41
83 87 0.980231 GTGGATGAGGCTCTGGAGGT 60.980 60.000 16.72 0.00 0.00 3.85
152 156 3.037686 AACACGACTGTGGTGGCCA 62.038 57.895 23.67 0.00 46.59 5.36
265 269 2.731374 CGGGCGATCTCCTTCTCC 59.269 66.667 0.93 0.00 0.00 3.71
295 308 1.891919 GGTGTCGTTGCAGCCTTCA 60.892 57.895 0.00 0.00 0.00 3.02
323 336 3.935993 CGGAGGACTTGGATGTGTT 57.064 52.632 0.00 0.00 0.00 3.32
374 387 2.742372 CGCTTTGGTCCTGGTCCG 60.742 66.667 5.51 0.00 0.00 4.79
399 412 3.276846 GCACAACCCGTCGCTGTT 61.277 61.111 0.00 0.00 0.00 3.16
400 413 2.631428 CACAACCCGTCGCTGTTG 59.369 61.111 18.59 18.59 45.65 3.33
462 475 1.153628 GCAGGGTAAGCGTCGTGAT 60.154 57.895 0.00 0.00 0.00 3.06
572 585 2.043939 TCTCCCCAGCTTTGGTAGAGTA 59.956 50.000 8.34 0.00 32.46 2.59
696 712 3.470888 CGGGGCGAAGTGGAGGAT 61.471 66.667 0.00 0.00 0.00 3.24
758 774 4.129737 CGGCCATCGTCCACGTCT 62.130 66.667 2.24 0.00 40.80 4.18
900 3452 3.918276 TATTTGGGCAGGCAACGACGT 62.918 52.381 0.00 0.00 46.39 4.34
903 3455 1.962306 GGGCAGGCAACGACGTAAA 60.962 57.895 0.00 0.00 46.39 2.01
904 3456 1.205820 GGCAGGCAACGACGTAAAC 59.794 57.895 0.00 0.00 46.39 2.01
905 3457 1.154727 GCAGGCAACGACGTAAACG 60.155 57.895 0.00 0.04 46.39 3.60
927 3479 5.007823 ACGTCAGTTATGAACCGATCTCTAG 59.992 44.000 0.00 0.00 37.14 2.43
1011 3619 0.248296 GCGACGAGATGAGTCACTCC 60.248 60.000 1.24 0.00 38.46 3.85
1028 3636 0.611062 TCCCACCAGATCGTCGAACT 60.611 55.000 0.00 0.00 0.00 3.01
1036 3644 4.753877 TCGTCGAACTGGAGCGCG 62.754 66.667 0.00 0.00 0.00 6.86
1037 3645 4.753877 CGTCGAACTGGAGCGCGA 62.754 66.667 12.10 0.00 32.04 5.87
1038 3646 2.876645 GTCGAACTGGAGCGCGAG 60.877 66.667 12.10 0.00 33.00 5.03
1069 3677 1.578206 CGACCGTCTCAGCAGTCTCA 61.578 60.000 0.00 0.00 0.00 3.27
1226 3834 1.740285 GGCCCATCATCTACGACGT 59.260 57.895 5.52 5.52 0.00 4.34
1230 3838 1.269102 CCCATCATCTACGACGTGGTC 60.269 57.143 11.56 0.00 0.00 4.02
1245 3853 2.186076 GTGGTCGACGATGACTTGATC 58.814 52.381 9.92 0.00 38.91 2.92
1263 3871 5.707242 TGATCTATTCCACCGAGTACATC 57.293 43.478 0.00 0.00 0.00 3.06
1396 4013 3.041211 CTGGGAGTGAGATTGGGATACA 58.959 50.000 0.00 0.00 39.74 2.29
1512 4138 2.045926 ATCTGCAAGCACCCCGAC 60.046 61.111 0.00 0.00 0.00 4.79
1547 4173 2.327200 AGGCCATACGAGGTTAAAGC 57.673 50.000 5.01 0.00 0.00 3.51
1551 4177 2.624636 CCATACGAGGTTAAAGCCGTT 58.375 47.619 0.00 0.00 36.58 4.44
1552 4178 2.350498 CCATACGAGGTTAAAGCCGTTG 59.650 50.000 0.00 0.00 36.58 4.10
1572 4198 2.119611 TGGAAGCCTCCGGAGACA 59.880 61.111 33.39 18.76 45.85 3.41
1595 4221 2.656069 CCGACGACCATTCACCCCT 61.656 63.158 0.00 0.00 0.00 4.79
1598 4224 0.676782 GACGACCATTCACCCCTTGG 60.677 60.000 0.00 0.00 36.56 3.61
1617 4261 1.500844 GACAGACGACGACGATGGT 59.499 57.895 15.32 8.14 42.66 3.55
1677 4363 1.676635 CGGAGAGTACACCGTCCCA 60.677 63.158 14.81 0.00 43.28 4.37
1826 4512 0.877071 CACGTGCAAAGGCTCATCTT 59.123 50.000 0.82 0.00 41.91 2.40
1866 4552 1.153667 CCTGACTCTCGAGGCTTGC 60.154 63.158 13.56 0.00 37.35 4.01
1952 4638 2.425668 GCCATAAATTAGCCACCGTTGT 59.574 45.455 0.00 0.00 0.00 3.32
2029 4715 3.309436 TTCCTCACCATGGTCGGCG 62.309 63.158 16.53 3.63 0.00 6.46
2065 4751 3.806591 TCGTTCAAGGTCGACATCC 57.193 52.632 18.91 0.00 0.00 3.51
2166 4852 3.556213 CCACGAAACACCTCCACTTATCA 60.556 47.826 0.00 0.00 0.00 2.15
2169 4855 4.253685 CGAAACACCTCCACTTATCATGT 58.746 43.478 0.00 0.00 0.00 3.21
2175 4861 3.209410 CCTCCACTTATCATGTGCCTTC 58.791 50.000 0.00 0.00 34.38 3.46
2302 4988 3.641437 CGACAAGCAAAATCCTTTGGA 57.359 42.857 0.23 0.00 41.96 3.53
2305 4991 4.808364 CGACAAGCAAAATCCTTTGGAAAA 59.192 37.500 0.23 0.00 41.96 2.29
2334 5020 4.798882 ACCTGGAAACATTGTCCTTGTTA 58.201 39.130 0.00 0.00 41.51 2.41
2376 5062 2.502538 TCCCAATAAGTACGACCCCAAG 59.497 50.000 0.00 0.00 0.00 3.61
2386 5072 1.895966 GACCCCAAGGAGTACGACC 59.104 63.158 0.00 4.37 36.73 4.79
2387 5073 1.941999 GACCCCAAGGAGTACGACCG 61.942 65.000 0.00 0.00 36.73 4.79
2450 5136 2.863740 TCAACTGCAACAAGTACGACAG 59.136 45.455 0.00 0.00 0.00 3.51
2467 5153 4.736896 GCCTCGACGTTCCGGCTT 62.737 66.667 13.57 0.00 39.42 4.35
2476 5162 3.676605 TTCCGGCTTCGAGCGTGA 61.677 61.111 0.00 0.00 43.62 4.35
2578 5264 0.817634 CAGGTTCTTGGTCCGCAACA 60.818 55.000 0.00 0.00 0.00 3.33
2636 5322 0.394352 GGGCCGTTGTGGATTCAGAT 60.394 55.000 0.00 0.00 42.00 2.90
2643 5329 3.753272 CGTTGTGGATTCAGATGGAACTT 59.247 43.478 0.00 0.00 38.60 2.66
2655 5341 1.922570 TGGAACTTAAGCGCGAGATC 58.077 50.000 12.10 1.71 0.00 2.75
2675 5361 4.752879 ACGATGGGCGGTGAACGG 62.753 66.667 0.00 0.00 46.49 4.44
2678 5364 3.615509 GATGGGCGGTGAACGGGAA 62.616 63.158 0.00 0.00 44.51 3.97
2687 5373 1.534163 GGTGAACGGGAAAACTAGCAC 59.466 52.381 0.00 0.00 0.00 4.40
2718 5404 1.202687 TGATCGGGTGATGGATGCTTC 60.203 52.381 0.00 0.00 34.09 3.86
2720 5406 0.465705 TCGGGTGATGGATGCTTCTC 59.534 55.000 1.88 0.00 0.00 2.87
2805 5491 9.653287 ACATAATTCTCTAAACATTCGTCTCAA 57.347 29.630 0.00 0.00 0.00 3.02
2810 5496 6.796426 TCTCTAAACATTCGTCTCAATCGAT 58.204 36.000 0.00 0.00 37.18 3.59
2811 5497 7.258441 TCTCTAAACATTCGTCTCAATCGATT 58.742 34.615 4.39 4.39 37.18 3.34
2812 5498 8.403236 TCTCTAAACATTCGTCTCAATCGATTA 58.597 33.333 10.97 0.00 37.18 1.75
2813 5499 8.920509 TCTAAACATTCGTCTCAATCGATTAA 57.079 30.769 10.97 0.47 37.18 1.40
2814 5500 9.020813 TCTAAACATTCGTCTCAATCGATTAAG 57.979 33.333 10.97 6.08 37.18 1.85
2815 5501 7.827819 AAACATTCGTCTCAATCGATTAAGA 57.172 32.000 10.97 8.84 37.18 2.10
2816 5502 6.814076 ACATTCGTCTCAATCGATTAAGAC 57.186 37.500 25.63 25.63 37.18 3.01
2817 5503 6.330278 ACATTCGTCTCAATCGATTAAGACA 58.670 36.000 31.33 18.93 38.41 3.41
2818 5504 6.980978 ACATTCGTCTCAATCGATTAAGACAT 59.019 34.615 31.33 20.05 38.41 3.06
2819 5505 8.135529 ACATTCGTCTCAATCGATTAAGACATA 58.864 33.333 31.33 21.89 38.41 2.29
2820 5506 8.968242 CATTCGTCTCAATCGATTAAGACATAA 58.032 33.333 31.33 25.55 38.41 1.90
2821 5507 7.909777 TCGTCTCAATCGATTAAGACATAAC 57.090 36.000 31.33 12.81 38.41 1.89
2822 5508 6.916387 TCGTCTCAATCGATTAAGACATAACC 59.084 38.462 31.33 11.74 38.41 2.85
2823 5509 6.695713 CGTCTCAATCGATTAAGACATAACCA 59.304 38.462 31.33 0.83 38.41 3.67
2824 5510 7.222031 CGTCTCAATCGATTAAGACATAACCAA 59.778 37.037 31.33 0.17 38.41 3.67
2825 5511 8.543774 GTCTCAATCGATTAAGACATAACCAAG 58.456 37.037 28.95 6.34 38.39 3.61
2826 5512 8.258007 TCTCAATCGATTAAGACATAACCAAGT 58.742 33.333 10.97 0.00 0.00 3.16
2827 5513 8.420374 TCAATCGATTAAGACATAACCAAGTC 57.580 34.615 10.97 0.00 35.02 3.01
2828 5514 8.258007 TCAATCGATTAAGACATAACCAAGTCT 58.742 33.333 10.97 0.00 46.45 3.24
2829 5515 8.543774 CAATCGATTAAGACATAACCAAGTCTC 58.456 37.037 10.97 0.00 43.88 3.36
2830 5516 6.263344 TCGATTAAGACATAACCAAGTCTCG 58.737 40.000 0.00 0.00 43.88 4.04
2831 5517 5.459107 CGATTAAGACATAACCAAGTCTCGG 59.541 44.000 0.00 0.00 43.88 4.63
2832 5518 5.733620 TTAAGACATAACCAAGTCTCGGT 57.266 39.130 0.00 0.00 43.88 4.69
2833 5519 3.870633 AGACATAACCAAGTCTCGGTC 57.129 47.619 0.00 0.00 40.96 4.79
2834 5520 2.163815 AGACATAACCAAGTCTCGGTCG 59.836 50.000 0.00 0.00 40.96 4.79
2835 5521 1.203994 ACATAACCAAGTCTCGGTCGG 59.796 52.381 0.00 0.00 34.99 4.79
2836 5522 0.175073 ATAACCAAGTCTCGGTCGGC 59.825 55.000 0.00 0.00 34.99 5.54
2837 5523 0.896940 TAACCAAGTCTCGGTCGGCT 60.897 55.000 0.00 0.00 34.99 5.52
2838 5524 0.896940 AACCAAGTCTCGGTCGGCTA 60.897 55.000 0.00 0.00 34.99 3.93
2839 5525 0.896940 ACCAAGTCTCGGTCGGCTAA 60.897 55.000 0.00 0.00 27.30 3.09
2840 5526 0.460311 CCAAGTCTCGGTCGGCTAAT 59.540 55.000 0.00 0.00 0.00 1.73
2841 5527 1.679680 CCAAGTCTCGGTCGGCTAATA 59.320 52.381 0.00 0.00 0.00 0.98
2850 5536 3.446873 TCGGTCGGCTAATACTTAACCAA 59.553 43.478 0.00 0.00 0.00 3.67
2856 5542 6.035758 GTCGGCTAATACTTAACCAAGTCTTG 59.964 42.308 5.53 5.53 44.04 3.02
2870 5556 4.999950 CCAAGTCTTGGTCCATGCTATATC 59.000 45.833 21.76 0.00 45.93 1.63
2872 5558 3.259374 AGTCTTGGTCCATGCTATATCCG 59.741 47.826 0.00 0.00 0.00 4.18
2884 5570 6.096141 CCATGCTATATCCGTGAGATCTTACT 59.904 42.308 14.97 0.17 36.33 2.24
2897 5583 5.807520 TGAGATCTTACTTTGAGATTCGTGC 59.192 40.000 0.00 0.00 34.13 5.34
2898 5584 5.724328 AGATCTTACTTTGAGATTCGTGCA 58.276 37.500 0.00 0.00 34.13 4.57
2899 5585 6.166279 AGATCTTACTTTGAGATTCGTGCAA 58.834 36.000 0.00 0.00 34.13 4.08
2900 5586 6.820656 AGATCTTACTTTGAGATTCGTGCAAT 59.179 34.615 0.00 0.00 34.13 3.56
2901 5587 6.801539 TCTTACTTTGAGATTCGTGCAATT 57.198 33.333 0.00 0.00 0.00 2.32
2902 5588 7.202016 TCTTACTTTGAGATTCGTGCAATTT 57.798 32.000 0.00 0.00 0.00 1.82
2903 5589 7.298122 TCTTACTTTGAGATTCGTGCAATTTC 58.702 34.615 0.00 0.00 0.00 2.17
2904 5590 5.695851 ACTTTGAGATTCGTGCAATTTCT 57.304 34.783 0.00 0.00 0.00 2.52
2905 5591 6.076981 ACTTTGAGATTCGTGCAATTTCTT 57.923 33.333 0.00 0.00 0.00 2.52
2906 5592 6.507023 ACTTTGAGATTCGTGCAATTTCTTT 58.493 32.000 0.00 0.00 0.00 2.52
2907 5593 6.638468 ACTTTGAGATTCGTGCAATTTCTTTC 59.362 34.615 0.00 0.00 0.00 2.62
2911 5597 6.857964 TGAGATTCGTGCAATTTCTTTCTTTC 59.142 34.615 0.00 0.00 0.00 2.62
2916 5602 7.826260 TCGTGCAATTTCTTTCTTTCTTTTT 57.174 28.000 0.00 0.00 0.00 1.94
2929 5615 5.766222 TCTTTCTTTTTCTCTCTTGCATGC 58.234 37.500 11.82 11.82 0.00 4.06
2942 5628 3.937079 TCTTGCATGCTATGTCACTTGAG 59.063 43.478 20.33 0.00 0.00 3.02
2945 5631 2.223203 GCATGCTATGTCACTTGAGTGC 60.223 50.000 11.37 3.04 45.25 4.40
2952 5638 1.136110 TGTCACTTGAGTGCGACTTGA 59.864 47.619 6.27 0.00 45.25 3.02
2963 5649 5.578336 TGAGTGCGACTTGATTAAATCTCAG 59.422 40.000 0.00 0.00 0.00 3.35
3023 5709 8.954950 ATTGTCTAGAATGTCTACAGGAATTG 57.045 34.615 0.00 0.00 0.00 2.32
3040 5728 9.856488 ACAGGAATTGCAGTTATATATAGTACG 57.144 33.333 0.00 0.00 0.00 3.67
3064 5752 0.250858 TATCATGCGGATTGCCCCTG 60.251 55.000 0.00 0.00 45.60 4.45
3087 5775 1.461461 TGCCCCTAGCCCCATCTAC 60.461 63.158 0.00 0.00 42.71 2.59
3121 5816 3.356290 AGCAATCCACATGTTAGGGTTC 58.644 45.455 0.00 0.00 0.00 3.62
3122 5817 2.097466 GCAATCCACATGTTAGGGTTCG 59.903 50.000 0.00 0.00 0.00 3.95
3123 5818 3.605634 CAATCCACATGTTAGGGTTCGA 58.394 45.455 0.00 0.00 0.00 3.71
3124 5819 4.199310 CAATCCACATGTTAGGGTTCGAT 58.801 43.478 0.00 0.00 0.00 3.59
3125 5820 5.364778 CAATCCACATGTTAGGGTTCGATA 58.635 41.667 0.00 0.00 0.00 2.92
3126 5821 5.825593 ATCCACATGTTAGGGTTCGATAT 57.174 39.130 0.00 0.00 0.00 1.63
3127 5822 6.928348 ATCCACATGTTAGGGTTCGATATA 57.072 37.500 0.00 0.00 0.00 0.86
3128 5823 6.092955 TCCACATGTTAGGGTTCGATATAC 57.907 41.667 0.00 0.00 0.00 1.47
3129 5824 5.011329 TCCACATGTTAGGGTTCGATATACC 59.989 44.000 0.00 0.00 34.82 2.73
3130 5825 5.011738 CCACATGTTAGGGTTCGATATACCT 59.988 44.000 0.00 4.20 35.92 3.08
3131 5826 5.926542 CACATGTTAGGGTTCGATATACCTG 59.073 44.000 0.00 0.00 35.92 4.00
3132 5827 5.601313 ACATGTTAGGGTTCGATATACCTGT 59.399 40.000 4.81 0.00 35.92 4.00
3133 5828 5.524971 TGTTAGGGTTCGATATACCTGTG 57.475 43.478 4.81 0.00 35.92 3.66
3134 5829 5.202765 TGTTAGGGTTCGATATACCTGTGA 58.797 41.667 4.81 0.00 35.92 3.58
3135 5830 5.657745 TGTTAGGGTTCGATATACCTGTGAA 59.342 40.000 4.81 0.00 35.92 3.18
3136 5831 6.154877 TGTTAGGGTTCGATATACCTGTGAAA 59.845 38.462 4.81 0.00 35.92 2.69
3137 5832 5.687166 AGGGTTCGATATACCTGTGAAAA 57.313 39.130 4.81 0.00 35.92 2.29
3138 5833 5.425630 AGGGTTCGATATACCTGTGAAAAC 58.574 41.667 4.81 0.00 35.92 2.43
3139 5834 5.046159 AGGGTTCGATATACCTGTGAAAACA 60.046 40.000 4.81 0.00 35.92 2.83
3140 5835 5.644636 GGGTTCGATATACCTGTGAAAACAA 59.355 40.000 4.81 0.00 35.92 2.83
3141 5836 6.402875 GGGTTCGATATACCTGTGAAAACAAC 60.403 42.308 4.81 0.00 35.92 3.32
3142 5837 6.370718 GGTTCGATATACCTGTGAAAACAACT 59.629 38.462 0.00 0.00 32.75 3.16
3143 5838 6.961359 TCGATATACCTGTGAAAACAACTG 57.039 37.500 0.00 0.00 0.00 3.16
3144 5839 6.693466 TCGATATACCTGTGAAAACAACTGA 58.307 36.000 0.00 0.00 0.00 3.41
3145 5840 7.156000 TCGATATACCTGTGAAAACAACTGAA 58.844 34.615 0.00 0.00 0.00 3.02
3146 5841 7.330946 TCGATATACCTGTGAAAACAACTGAAG 59.669 37.037 0.00 0.00 0.00 3.02
3147 5842 7.330946 CGATATACCTGTGAAAACAACTGAAGA 59.669 37.037 0.00 0.00 0.00 2.87
3148 5843 9.167311 GATATACCTGTGAAAACAACTGAAGAT 57.833 33.333 0.00 0.00 0.00 2.40
3149 5844 5.757850 ACCTGTGAAAACAACTGAAGATC 57.242 39.130 0.00 0.00 0.00 2.75
3150 5845 4.580580 ACCTGTGAAAACAACTGAAGATCC 59.419 41.667 0.00 0.00 0.00 3.36
3151 5846 4.580167 CCTGTGAAAACAACTGAAGATCCA 59.420 41.667 0.00 0.00 0.00 3.41
3152 5847 5.067674 CCTGTGAAAACAACTGAAGATCCAA 59.932 40.000 0.00 0.00 0.00 3.53
3153 5848 6.135290 TGTGAAAACAACTGAAGATCCAAG 57.865 37.500 0.00 0.00 0.00 3.61
3154 5849 5.885352 TGTGAAAACAACTGAAGATCCAAGA 59.115 36.000 0.00 0.00 0.00 3.02
3155 5850 6.547141 TGTGAAAACAACTGAAGATCCAAGAT 59.453 34.615 0.00 0.00 0.00 2.40
3156 5851 7.719193 TGTGAAAACAACTGAAGATCCAAGATA 59.281 33.333 0.00 0.00 0.00 1.98
3157 5852 8.567948 GTGAAAACAACTGAAGATCCAAGATAA 58.432 33.333 0.00 0.00 0.00 1.75
3158 5853 9.300681 TGAAAACAACTGAAGATCCAAGATAAT 57.699 29.630 0.00 0.00 0.00 1.28
3160 5855 9.918630 AAAACAACTGAAGATCCAAGATAATTG 57.081 29.630 0.00 0.00 0.00 2.32
3161 5856 7.093322 ACAACTGAAGATCCAAGATAATTGC 57.907 36.000 0.00 0.00 0.00 3.56
3162 5857 6.096001 ACAACTGAAGATCCAAGATAATTGCC 59.904 38.462 0.00 0.00 0.00 4.52
3163 5858 4.818546 ACTGAAGATCCAAGATAATTGCCG 59.181 41.667 0.00 0.00 0.00 5.69
3164 5859 5.034852 TGAAGATCCAAGATAATTGCCGA 57.965 39.130 0.00 0.00 0.00 5.54
3165 5860 5.624159 TGAAGATCCAAGATAATTGCCGAT 58.376 37.500 0.00 0.00 0.00 4.18
3166 5861 5.471116 TGAAGATCCAAGATAATTGCCGATG 59.529 40.000 0.00 0.00 0.00 3.84
3167 5862 4.330250 AGATCCAAGATAATTGCCGATGG 58.670 43.478 0.00 0.00 0.00 3.51
3168 5863 3.855255 TCCAAGATAATTGCCGATGGA 57.145 42.857 0.00 0.00 33.32 3.41
3169 5864 4.371624 TCCAAGATAATTGCCGATGGAT 57.628 40.909 0.00 0.00 30.90 3.41
3170 5865 5.497464 TCCAAGATAATTGCCGATGGATA 57.503 39.130 0.00 0.00 30.90 2.59
3171 5866 6.065976 TCCAAGATAATTGCCGATGGATAT 57.934 37.500 0.00 0.00 30.90 1.63
3172 5867 5.882000 TCCAAGATAATTGCCGATGGATATG 59.118 40.000 0.00 0.00 30.90 1.78
3173 5868 5.882000 CCAAGATAATTGCCGATGGATATGA 59.118 40.000 0.00 0.00 0.00 2.15
3174 5869 6.544931 CCAAGATAATTGCCGATGGATATGAT 59.455 38.462 0.00 0.00 0.00 2.45
3175 5870 7.255035 CCAAGATAATTGCCGATGGATATGATC 60.255 40.741 0.00 0.00 0.00 2.92
3176 5871 7.134362 AGATAATTGCCGATGGATATGATCT 57.866 36.000 0.00 0.00 0.00 2.75
3177 5872 7.571919 AGATAATTGCCGATGGATATGATCTT 58.428 34.615 0.00 0.00 0.00 2.40
3178 5873 5.892160 AATTGCCGATGGATATGATCTTG 57.108 39.130 0.00 0.00 0.00 3.02
3179 5874 3.339253 TGCCGATGGATATGATCTTGG 57.661 47.619 0.00 0.00 0.00 3.61
3180 5875 2.026915 TGCCGATGGATATGATCTTGGG 60.027 50.000 0.00 0.00 0.00 4.12
3181 5876 2.026822 GCCGATGGATATGATCTTGGGT 60.027 50.000 0.00 0.00 0.00 4.51
3182 5877 3.560025 GCCGATGGATATGATCTTGGGTT 60.560 47.826 0.00 0.00 0.00 4.11
3183 5878 4.323485 GCCGATGGATATGATCTTGGGTTA 60.323 45.833 0.00 0.00 0.00 2.85
3184 5879 5.630069 GCCGATGGATATGATCTTGGGTTAT 60.630 44.000 0.00 0.00 0.00 1.89
3185 5880 6.051717 CCGATGGATATGATCTTGGGTTATC 58.948 44.000 0.00 0.00 0.00 1.75
3186 5881 6.051717 CGATGGATATGATCTTGGGTTATCC 58.948 44.000 0.00 0.00 39.07 2.59
3187 5882 6.126940 CGATGGATATGATCTTGGGTTATCCT 60.127 42.308 8.33 0.00 39.27 3.24
3188 5883 7.069950 CGATGGATATGATCTTGGGTTATCCTA 59.930 40.741 8.33 0.00 39.27 2.94
3189 5884 8.700145 ATGGATATGATCTTGGGTTATCCTAA 57.300 34.615 8.33 0.00 39.27 2.69
3190 5885 8.518720 TGGATATGATCTTGGGTTATCCTAAA 57.481 34.615 8.33 0.00 39.27 1.85
3191 5886 8.954729 TGGATATGATCTTGGGTTATCCTAAAA 58.045 33.333 8.33 0.00 39.27 1.52
3192 5887 9.232473 GGATATGATCTTGGGTTATCCTAAAAC 57.768 37.037 0.00 0.00 36.78 2.43
3193 5888 9.793259 GATATGATCTTGGGTTATCCTAAAACA 57.207 33.333 0.00 0.00 33.89 2.83
3195 5890 8.697507 ATGATCTTGGGTTATCCTAAAACATC 57.302 34.615 0.00 0.00 33.89 3.06
3196 5891 7.872138 TGATCTTGGGTTATCCTAAAACATCT 58.128 34.615 0.00 0.00 33.89 2.90
3197 5892 8.336235 TGATCTTGGGTTATCCTAAAACATCTT 58.664 33.333 0.00 0.00 33.89 2.40
3198 5893 8.753497 ATCTTGGGTTATCCTAAAACATCTTC 57.247 34.615 0.00 0.00 33.89 2.87
3199 5894 7.928873 TCTTGGGTTATCCTAAAACATCTTCT 58.071 34.615 0.00 0.00 33.89 2.85
3200 5895 8.047310 TCTTGGGTTATCCTAAAACATCTTCTC 58.953 37.037 0.00 0.00 33.89 2.87
3201 5896 7.510675 TGGGTTATCCTAAAACATCTTCTCT 57.489 36.000 0.00 0.00 36.20 3.10
3202 5897 7.565680 TGGGTTATCCTAAAACATCTTCTCTC 58.434 38.462 0.00 0.00 36.20 3.20
3203 5898 6.993308 GGGTTATCCTAAAACATCTTCTCTCC 59.007 42.308 0.00 0.00 0.00 3.71
3204 5899 7.365652 GGGTTATCCTAAAACATCTTCTCTCCA 60.366 40.741 0.00 0.00 0.00 3.86
3205 5900 7.496263 GGTTATCCTAAAACATCTTCTCTCCAC 59.504 40.741 0.00 0.00 0.00 4.02
3206 5901 5.073311 TCCTAAAACATCTTCTCTCCACG 57.927 43.478 0.00 0.00 0.00 4.94
3207 5902 4.527038 TCCTAAAACATCTTCTCTCCACGT 59.473 41.667 0.00 0.00 0.00 4.49
3208 5903 5.011738 TCCTAAAACATCTTCTCTCCACGTT 59.988 40.000 0.00 0.00 0.00 3.99
3209 5904 5.348997 CCTAAAACATCTTCTCTCCACGTTC 59.651 44.000 0.00 0.00 0.00 3.95
3210 5905 4.336889 AAACATCTTCTCTCCACGTTCA 57.663 40.909 0.00 0.00 0.00 3.18
3211 5906 4.336889 AACATCTTCTCTCCACGTTCAA 57.663 40.909 0.00 0.00 0.00 2.69
3212 5907 3.654414 ACATCTTCTCTCCACGTTCAAC 58.346 45.455 0.00 0.00 0.00 3.18
3213 5908 3.322254 ACATCTTCTCTCCACGTTCAACT 59.678 43.478 0.00 0.00 0.00 3.16
3214 5909 3.371102 TCTTCTCTCCACGTTCAACTG 57.629 47.619 0.00 0.00 0.00 3.16
3215 5910 1.795286 CTTCTCTCCACGTTCAACTGC 59.205 52.381 0.00 0.00 0.00 4.40
3216 5911 0.750249 TCTCTCCACGTTCAACTGCA 59.250 50.000 0.00 0.00 0.00 4.41
3217 5912 1.143305 CTCTCCACGTTCAACTGCAG 58.857 55.000 13.48 13.48 0.00 4.41
3218 5913 0.880278 TCTCCACGTTCAACTGCAGC 60.880 55.000 15.27 0.00 0.00 5.25
3219 5914 1.845809 CTCCACGTTCAACTGCAGCC 61.846 60.000 15.27 0.00 0.00 4.85
3220 5915 2.639286 CACGTTCAACTGCAGCCC 59.361 61.111 15.27 0.00 0.00 5.19
3221 5916 2.594592 ACGTTCAACTGCAGCCCC 60.595 61.111 15.27 0.00 0.00 5.80
3222 5917 3.726517 CGTTCAACTGCAGCCCCG 61.727 66.667 15.27 5.54 0.00 5.73
3223 5918 4.043200 GTTCAACTGCAGCCCCGC 62.043 66.667 15.27 0.00 0.00 6.13
3232 5927 3.882326 CAGCCCCGCCCATGAGAT 61.882 66.667 0.00 0.00 0.00 2.75
3233 5928 3.564218 AGCCCCGCCCATGAGATC 61.564 66.667 0.00 0.00 0.00 2.75
3234 5929 3.877450 GCCCCGCCCATGAGATCA 61.877 66.667 0.00 0.00 0.00 2.92
3235 5930 2.918248 CCCCGCCCATGAGATCAA 59.082 61.111 0.00 0.00 0.00 2.57
3236 5931 1.227102 CCCCGCCCATGAGATCAAA 59.773 57.895 0.00 0.00 0.00 2.69
3237 5932 0.178981 CCCCGCCCATGAGATCAAAT 60.179 55.000 0.00 0.00 0.00 2.32
3238 5933 1.696063 CCCGCCCATGAGATCAAATT 58.304 50.000 0.00 0.00 0.00 1.82
3239 5934 1.610522 CCCGCCCATGAGATCAAATTC 59.389 52.381 0.00 0.00 0.00 2.17
3240 5935 2.300433 CCGCCCATGAGATCAAATTCA 58.700 47.619 0.00 0.00 0.00 2.57
3241 5936 2.033801 CCGCCCATGAGATCAAATTCAC 59.966 50.000 0.00 0.00 0.00 3.18
3242 5937 2.684374 CGCCCATGAGATCAAATTCACA 59.316 45.455 0.00 0.00 0.00 3.58
3243 5938 3.242969 CGCCCATGAGATCAAATTCACAG 60.243 47.826 0.00 0.00 0.00 3.66
3244 5939 3.067742 GCCCATGAGATCAAATTCACAGG 59.932 47.826 0.00 0.00 0.00 4.00
3245 5940 3.067742 CCCATGAGATCAAATTCACAGGC 59.932 47.826 0.00 0.00 0.00 4.85
3246 5941 3.242969 CCATGAGATCAAATTCACAGGCG 60.243 47.826 0.00 0.00 0.00 5.52
3247 5942 1.739466 TGAGATCAAATTCACAGGCGC 59.261 47.619 0.00 0.00 0.00 6.53
3248 5943 1.739466 GAGATCAAATTCACAGGCGCA 59.261 47.619 10.83 0.00 0.00 6.09
3249 5944 2.161855 AGATCAAATTCACAGGCGCAA 58.838 42.857 10.83 0.00 0.00 4.85
3250 5945 2.557924 AGATCAAATTCACAGGCGCAAA 59.442 40.909 10.83 0.00 0.00 3.68
3251 5946 2.879002 TCAAATTCACAGGCGCAAAA 57.121 40.000 10.83 0.00 0.00 2.44
3252 5947 3.170791 TCAAATTCACAGGCGCAAAAA 57.829 38.095 10.83 0.00 0.00 1.94
3253 5948 2.863137 TCAAATTCACAGGCGCAAAAAC 59.137 40.909 10.83 0.00 0.00 2.43
3254 5949 1.864565 AATTCACAGGCGCAAAAACC 58.135 45.000 10.83 0.00 0.00 3.27
3255 5950 0.749649 ATTCACAGGCGCAAAAACCA 59.250 45.000 10.83 0.00 0.00 3.67
3256 5951 0.179124 TTCACAGGCGCAAAAACCAC 60.179 50.000 10.83 0.00 0.00 4.16
3257 5952 1.140589 CACAGGCGCAAAAACCACA 59.859 52.632 10.83 0.00 0.00 4.17
3258 5953 0.249405 CACAGGCGCAAAAACCACAT 60.249 50.000 10.83 0.00 0.00 3.21
3259 5954 0.031994 ACAGGCGCAAAAACCACATC 59.968 50.000 10.83 0.00 0.00 3.06
3260 5955 0.031857 CAGGCGCAAAAACCACATCA 59.968 50.000 10.83 0.00 0.00 3.07
3261 5956 0.749649 AGGCGCAAAAACCACATCAA 59.250 45.000 10.83 0.00 0.00 2.57
3262 5957 1.137872 AGGCGCAAAAACCACATCAAA 59.862 42.857 10.83 0.00 0.00 2.69
3263 5958 1.526464 GGCGCAAAAACCACATCAAAG 59.474 47.619 10.83 0.00 0.00 2.77
3264 5959 1.526464 GCGCAAAAACCACATCAAAGG 59.474 47.619 0.30 0.00 0.00 3.11
3265 5960 2.134346 CGCAAAAACCACATCAAAGGG 58.866 47.619 0.00 0.00 0.00 3.95
3266 5961 2.223923 CGCAAAAACCACATCAAAGGGA 60.224 45.455 0.00 0.00 0.00 4.20
3267 5962 3.392882 GCAAAAACCACATCAAAGGGAG 58.607 45.455 0.00 0.00 0.00 4.30
3268 5963 3.392882 CAAAAACCACATCAAAGGGAGC 58.607 45.455 0.00 0.00 0.00 4.70
3269 5964 2.380064 AAACCACATCAAAGGGAGCA 57.620 45.000 0.00 0.00 0.00 4.26
3270 5965 1.620822 AACCACATCAAAGGGAGCAC 58.379 50.000 0.00 0.00 0.00 4.40
3271 5966 0.773644 ACCACATCAAAGGGAGCACT 59.226 50.000 0.00 0.00 0.00 4.40
3272 5967 1.171308 CCACATCAAAGGGAGCACTG 58.829 55.000 0.00 0.00 0.00 3.66
3273 5968 1.171308 CACATCAAAGGGAGCACTGG 58.829 55.000 0.00 0.00 0.00 4.00
3274 5969 0.038744 ACATCAAAGGGAGCACTGGG 59.961 55.000 0.00 0.00 0.00 4.45
3275 5970 0.329261 CATCAAAGGGAGCACTGGGA 59.671 55.000 0.00 0.00 0.00 4.37
3276 5971 1.064166 CATCAAAGGGAGCACTGGGAT 60.064 52.381 0.00 0.00 0.00 3.85
3277 5972 0.329261 TCAAAGGGAGCACTGGGATG 59.671 55.000 0.00 0.00 0.00 3.51
3278 5973 1.000396 AAAGGGAGCACTGGGATGC 60.000 57.895 0.00 0.00 46.50 3.91
3287 5982 2.436417 GCACTGGGATGCTTAAACTCA 58.564 47.619 0.00 0.00 42.62 3.41
3288 5983 2.819608 GCACTGGGATGCTTAAACTCAA 59.180 45.455 0.00 0.00 42.62 3.02
3289 5984 3.255642 GCACTGGGATGCTTAAACTCAAA 59.744 43.478 0.00 0.00 42.62 2.69
3290 5985 4.616835 GCACTGGGATGCTTAAACTCAAAG 60.617 45.833 0.00 0.00 42.62 2.77
3291 5986 4.082125 ACTGGGATGCTTAAACTCAAAGG 58.918 43.478 0.00 0.00 0.00 3.11
3292 5987 4.082125 CTGGGATGCTTAAACTCAAAGGT 58.918 43.478 0.00 0.00 0.00 3.50
3293 5988 3.826157 TGGGATGCTTAAACTCAAAGGTG 59.174 43.478 0.00 0.00 0.00 4.00
3294 5989 3.367395 GGGATGCTTAAACTCAAAGGTGC 60.367 47.826 0.00 0.00 0.00 5.01
3295 5990 3.367395 GGATGCTTAAACTCAAAGGTGCC 60.367 47.826 0.00 0.00 0.00 5.01
3296 5991 2.660572 TGCTTAAACTCAAAGGTGCCA 58.339 42.857 0.00 0.00 0.00 4.92
3310 6005 1.069227 GGTGCCACGATTTGACAGTTC 60.069 52.381 0.00 0.00 0.00 3.01
3319 6014 3.057315 CGATTTGACAGTTCCAAATGCCT 60.057 43.478 5.21 0.00 42.35 4.75
3322 6017 2.942804 TGACAGTTCCAAATGCCTCAA 58.057 42.857 0.00 0.00 0.00 3.02
3371 6067 9.880157 GTAGTATAAAACTTTCACCATCAGGTA 57.120 33.333 0.00 0.00 42.48 3.08
3403 6099 8.373048 TGTAGTATCAAACTTTTCACGTTCAT 57.627 30.769 0.00 0.00 39.80 2.57
3417 6113 2.266554 CGTTCATGTCCTTCTGCTCTC 58.733 52.381 0.00 0.00 0.00 3.20
3445 6141 3.253230 GGCTGTTTGTTGTTGGATATGC 58.747 45.455 0.00 0.00 0.00 3.14
3491 6187 4.602340 ACGTCCTCAGTAGTGAATTGTT 57.398 40.909 1.11 0.00 30.14 2.83
3495 6191 3.327757 TCCTCAGTAGTGAATTGTTGGCT 59.672 43.478 1.11 0.00 30.14 4.75
3577 6273 9.913310 TCATCTCTTATAGTGTCTATATCAGGG 57.087 37.037 0.00 0.00 0.00 4.45
3578 6274 9.693739 CATCTCTTATAGTGTCTATATCAGGGT 57.306 37.037 0.00 0.00 0.00 4.34
3609 6305 8.984891 AATTCAGTGAAATTTCGCATATTTCA 57.015 26.923 28.38 11.61 45.06 2.69
3615 6311 6.047870 TGAAATTTCGCATATTTCAATGGGG 58.952 36.000 13.34 0.00 44.58 4.96
3616 6312 5.612725 AATTTCGCATATTTCAATGGGGT 57.387 34.783 1.73 0.00 39.56 4.95
3617 6313 5.612725 ATTTCGCATATTTCAATGGGGTT 57.387 34.783 1.73 0.00 39.56 4.11
3618 6314 4.647424 TTCGCATATTTCAATGGGGTTC 57.353 40.909 1.73 0.00 39.56 3.62
3619 6315 3.625853 TCGCATATTTCAATGGGGTTCA 58.374 40.909 1.73 0.00 39.56 3.18
3620 6316 4.019858 TCGCATATTTCAATGGGGTTCAA 58.980 39.130 1.73 0.00 39.56 2.69
3621 6317 4.464244 TCGCATATTTCAATGGGGTTCAAA 59.536 37.500 1.73 0.00 39.56 2.69
3622 6318 5.047021 TCGCATATTTCAATGGGGTTCAAAA 60.047 36.000 1.73 0.00 39.56 2.44
3623 6319 5.816777 CGCATATTTCAATGGGGTTCAAAAT 59.183 36.000 0.00 0.00 36.46 1.82
3624 6320 6.983307 CGCATATTTCAATGGGGTTCAAAATA 59.017 34.615 0.00 0.00 36.46 1.40
3625 6321 7.656948 CGCATATTTCAATGGGGTTCAAAATAT 59.343 33.333 0.00 0.00 36.46 1.28
3626 6322 9.341078 GCATATTTCAATGGGGTTCAAAATATT 57.659 29.630 0.00 0.00 30.33 1.28
3633 6329 9.508642 TCAATGGGGTTCAAAATATTTTTAACC 57.491 29.630 31.53 31.53 46.29 2.85
3634 6330 9.513906 CAATGGGGTTCAAAATATTTTTAACCT 57.486 29.630 34.49 23.00 46.26 3.50
3638 6334 9.562408 GGGGTTCAAAATATTTTTAACCTCAAA 57.438 29.630 34.49 12.30 46.63 2.69
3651 6347 8.954950 TTTTAACCTCAAAATTTTGATGCAGA 57.045 26.923 28.86 15.23 45.26 4.26
3652 6348 9.558396 TTTTAACCTCAAAATTTTGATGCAGAT 57.442 25.926 28.86 16.69 45.26 2.90
3653 6349 9.558396 TTTAACCTCAAAATTTTGATGCAGATT 57.442 25.926 28.86 18.94 45.26 2.40
3654 6350 7.662604 AACCTCAAAATTTTGATGCAGATTC 57.337 32.000 28.86 0.00 45.26 2.52
3655 6351 6.761312 ACCTCAAAATTTTGATGCAGATTCA 58.239 32.000 28.86 7.57 45.26 2.57
3656 6352 7.218614 ACCTCAAAATTTTGATGCAGATTCAA 58.781 30.769 28.86 7.11 45.26 2.69
3657 6353 7.716123 ACCTCAAAATTTTGATGCAGATTCAAA 59.284 29.630 28.86 9.38 45.26 2.69
3658 6354 8.013378 CCTCAAAATTTTGATGCAGATTCAAAC 58.987 33.333 28.86 0.00 45.26 2.93
3659 6355 8.665643 TCAAAATTTTGATGCAGATTCAAACT 57.334 26.923 26.01 6.01 41.45 2.66
3660 6356 9.111613 TCAAAATTTTGATGCAGATTCAAACTT 57.888 25.926 26.01 10.92 41.45 2.66
3666 6362 9.761504 TTTTGATGCAGATTCAAACTTATTTCA 57.238 25.926 12.37 0.00 41.45 2.69
3667 6363 9.761504 TTTGATGCAGATTCAAACTTATTTCAA 57.238 25.926 9.38 0.00 37.97 2.69
3668 6364 9.761504 TTGATGCAGATTCAAACTTATTTCAAA 57.238 25.926 0.00 0.00 30.44 2.69
3669 6365 9.414295 TGATGCAGATTCAAACTTATTTCAAAG 57.586 29.630 0.00 0.00 0.00 2.77
3670 6366 9.415544 GATGCAGATTCAAACTTATTTCAAAGT 57.584 29.630 0.00 0.00 41.46 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.964860 CATCACCATCGGGCCAACAA 60.965 55.000 4.39 0.00 37.90 2.83
27 31 0.692476 CACCATCCACCTTGAGTCCA 59.308 55.000 0.00 0.00 0.00 4.02
66 70 0.689080 TGACCTCCAGAGCCTCATCC 60.689 60.000 0.00 0.00 0.00 3.51
69 73 1.039785 CGATGACCTCCAGAGCCTCA 61.040 60.000 0.00 0.00 0.00 3.86
83 87 4.794439 CACCGTGCGCCTCGATGA 62.794 66.667 20.45 0.00 0.00 2.92
147 151 2.233566 AGCATCCTTCCACTGGCCA 61.234 57.895 4.71 4.71 0.00 5.36
152 156 0.111061 TGCAACAGCATCCTTCCACT 59.889 50.000 0.00 0.00 32.31 4.00
216 220 0.249238 CGAGTACATGCTCAGCCTCC 60.249 60.000 0.00 0.00 35.33 4.30
265 269 1.022735 ACGACACCTACTATGAGCCG 58.977 55.000 0.00 0.00 0.00 5.52
383 396 2.631428 CAACAGCGACGGGTTGTG 59.369 61.111 0.00 0.00 39.36 3.33
518 531 0.035458 CTGGAGGCCACGTTCTTCTT 59.965 55.000 5.01 0.00 0.00 2.52
572 585 0.523546 CACGTCGAGCGCATAGAACT 60.524 55.000 11.47 0.00 46.11 3.01
679 695 3.470888 ATCCTCCACTTCGCCCCG 61.471 66.667 0.00 0.00 0.00 5.73
886 3438 1.205820 GTTTACGTCGTTGCCTGCC 59.794 57.895 1.78 0.00 0.00 4.85
908 3460 5.697067 AGGACTAGAGATCGGTTCATAACT 58.303 41.667 0.00 0.00 0.00 2.24
914 3466 4.512571 GTGTAGAGGACTAGAGATCGGTTC 59.487 50.000 0.00 0.00 0.00 3.62
927 3479 0.386113 GGAGATGCCGTGTAGAGGAC 59.614 60.000 0.00 0.00 0.00 3.85
949 3501 2.018866 CGGCGGCGATCTCAGAATC 61.019 63.158 29.19 0.00 0.00 2.52
950 3502 2.028190 CGGCGGCGATCTCAGAAT 59.972 61.111 29.19 0.00 0.00 2.40
951 3503 4.873129 GCGGCGGCGATCTCAGAA 62.873 66.667 36.87 0.00 0.00 3.02
997 3605 1.480137 CTGGTGGGAGTGACTCATCTC 59.520 57.143 15.33 6.79 30.11 2.75
998 3606 1.077828 TCTGGTGGGAGTGACTCATCT 59.922 52.381 15.33 0.00 30.11 2.90
1011 3619 0.458543 CCAGTTCGACGATCTGGTGG 60.459 60.000 32.91 18.02 41.83 4.61
1059 3667 1.138636 CGACATCGCTGAGACTGCTG 61.139 60.000 0.00 0.00 0.00 4.41
1069 3677 3.121030 GCCAAGCACGACATCGCT 61.121 61.111 0.14 0.00 44.43 4.93
1226 3834 2.092323 AGATCAAGTCATCGTCGACCA 58.908 47.619 10.58 0.00 36.52 4.02
1230 3838 4.677378 GTGGAATAGATCAAGTCATCGTCG 59.323 45.833 0.00 0.00 0.00 5.12
1236 3844 4.023980 ACTCGGTGGAATAGATCAAGTCA 58.976 43.478 0.00 0.00 0.00 3.41
1241 3849 5.137551 TGATGTACTCGGTGGAATAGATCA 58.862 41.667 0.00 0.00 33.80 2.92
1242 3850 5.707242 TGATGTACTCGGTGGAATAGATC 57.293 43.478 0.00 0.00 28.54 2.75
1245 3853 5.692204 GTGATTGATGTACTCGGTGGAATAG 59.308 44.000 0.00 0.00 0.00 1.73
1396 4013 1.880646 CGTGGTCTTTTGGTCGGGATT 60.881 52.381 0.00 0.00 0.00 3.01
1431 4048 1.742411 GCATGCTTCAGGGCGTAAGTA 60.742 52.381 11.37 0.00 41.68 2.24
1572 4198 1.301087 TGAATGGTCGTCGGCGTTT 60.301 52.632 10.18 0.00 39.49 3.60
1595 4221 1.239296 ATCGTCGTCGTCTGTCCCAA 61.239 55.000 1.33 0.00 38.33 4.12
1598 4224 1.226323 CCATCGTCGTCGTCTGTCC 60.226 63.158 1.33 0.00 38.33 4.02
1605 4231 1.062047 ATCGTCACCATCGTCGTCG 59.938 57.895 0.00 0.00 38.55 5.12
1617 4261 0.396435 AACTGGAGCCAACATCGTCA 59.604 50.000 0.00 0.00 0.00 4.35
1750 4436 2.543802 CGAGCCATGGCATGCTGAG 61.544 63.158 37.18 16.03 44.88 3.35
1794 4480 3.432588 ACGTGCTCCTCCTCGTCG 61.433 66.667 0.00 0.00 30.71 5.12
1866 4552 4.657824 AGCGTGGTCACCGTTCCG 62.658 66.667 0.00 0.00 0.00 4.30
2001 4687 2.224159 GGTGAGGAAGGAGTGGCCA 61.224 63.158 0.00 0.00 40.02 5.36
2005 4691 0.987294 ACCATGGTGAGGAAGGAGTG 59.013 55.000 18.99 0.00 0.00 3.51
2029 4715 1.719600 GACATGATAGATGGCGAGCC 58.280 55.000 7.26 7.26 0.00 4.70
2065 4751 2.390599 CCCCAACACAGATCGCACG 61.391 63.158 0.00 0.00 0.00 5.34
2117 4803 2.029290 ACGAACTGCTGTACGAAGGAAT 60.029 45.455 0.00 0.00 0.00 3.01
2175 4861 2.249535 CGCGAAGGATGAGCCCATG 61.250 63.158 0.00 0.00 37.37 3.66
2298 4984 0.468400 CCAGGTTCGGGGTTTTCCAA 60.468 55.000 0.00 0.00 42.91 3.53
2302 4988 1.342175 TGTTTCCAGGTTCGGGGTTTT 60.342 47.619 0.00 0.00 0.00 2.43
2305 4991 0.481128 AATGTTTCCAGGTTCGGGGT 59.519 50.000 0.00 0.00 0.00 4.95
2334 5020 1.705256 TGCGACGCTTTACTTCGAAT 58.295 45.000 22.08 0.00 42.29 3.34
2465 5151 3.470567 GCACGGTCACGCTCGAAG 61.471 66.667 0.00 0.00 46.04 3.79
2485 5171 2.496817 CCGACTACTGAGGCAGGC 59.503 66.667 0.00 0.00 35.51 4.85
2496 5182 2.758979 GTTGATCTTCCTCACCCGACTA 59.241 50.000 0.00 0.00 0.00 2.59
2578 5264 6.481644 CAGTAAAGCTTCTCAAGAACTTCAGT 59.518 38.462 0.00 0.00 30.69 3.41
2636 5322 1.797713 CGATCTCGCGCTTAAGTTCCA 60.798 52.381 5.56 0.00 0.00 3.53
2643 5329 0.306840 ATCGTTCGATCTCGCGCTTA 59.693 50.000 5.56 0.00 39.60 3.09
2655 5341 2.433491 TTCACCGCCCATCGTTCG 60.433 61.111 0.00 0.00 36.19 3.95
2675 5361 2.074576 GGAACTCCGTGCTAGTTTTCC 58.925 52.381 0.00 0.00 37.31 3.13
2705 5391 1.134159 AGGCAGAGAAGCATCCATCAC 60.134 52.381 0.00 0.00 35.83 3.06
2720 5406 5.945447 TTGTACCGCAATTGCAAAGGCAG 62.945 47.826 28.77 14.42 40.96 4.85
2782 5468 9.020813 CGATTGAGACGAATGTTTAGAGAATTA 57.979 33.333 0.00 0.00 0.00 1.40
2783 5469 7.759886 TCGATTGAGACGAATGTTTAGAGAATT 59.240 33.333 0.00 0.00 36.84 2.17
2800 5486 8.258007 ACTTGGTTATGTCTTAATCGATTGAGA 58.742 33.333 24.21 24.21 31.04 3.27
2805 5491 6.918569 CGAGACTTGGTTATGTCTTAATCGAT 59.081 38.462 0.00 0.00 40.30 3.59
2810 5496 5.620654 CGACCGAGACTTGGTTATGTCTTAA 60.621 44.000 15.92 0.00 40.30 1.85
2811 5497 4.142534 CGACCGAGACTTGGTTATGTCTTA 60.143 45.833 15.92 0.00 40.30 2.10
2812 5498 3.367087 CGACCGAGACTTGGTTATGTCTT 60.367 47.826 15.92 0.00 40.30 3.01
2813 5499 2.163815 CGACCGAGACTTGGTTATGTCT 59.836 50.000 15.92 0.00 42.18 3.41
2814 5500 2.527100 CGACCGAGACTTGGTTATGTC 58.473 52.381 15.92 1.87 40.63 3.06
2815 5501 1.203994 CCGACCGAGACTTGGTTATGT 59.796 52.381 15.92 0.00 40.63 2.29
2816 5502 1.922570 CCGACCGAGACTTGGTTATG 58.077 55.000 15.92 8.89 40.63 1.90
2817 5503 0.175073 GCCGACCGAGACTTGGTTAT 59.825 55.000 15.92 0.00 40.63 1.89
2818 5504 0.896940 AGCCGACCGAGACTTGGTTA 60.897 55.000 15.92 0.00 40.63 2.85
2819 5505 0.896940 TAGCCGACCGAGACTTGGTT 60.897 55.000 15.92 2.52 40.63 3.67
2820 5506 0.896940 TTAGCCGACCGAGACTTGGT 60.897 55.000 14.73 14.73 44.10 3.67
2821 5507 0.460311 ATTAGCCGACCGAGACTTGG 59.540 55.000 7.25 7.25 0.00 3.61
2822 5508 2.358267 AGTATTAGCCGACCGAGACTTG 59.642 50.000 0.00 0.00 0.00 3.16
2823 5509 2.652590 AGTATTAGCCGACCGAGACTT 58.347 47.619 0.00 0.00 0.00 3.01
2824 5510 2.345124 AGTATTAGCCGACCGAGACT 57.655 50.000 0.00 0.00 0.00 3.24
2825 5511 4.286101 GTTAAGTATTAGCCGACCGAGAC 58.714 47.826 0.00 0.00 0.00 3.36
2826 5512 3.316308 GGTTAAGTATTAGCCGACCGAGA 59.684 47.826 0.00 0.00 42.09 4.04
2827 5513 3.636381 GGTTAAGTATTAGCCGACCGAG 58.364 50.000 0.00 0.00 42.09 4.63
2828 5514 3.715628 GGTTAAGTATTAGCCGACCGA 57.284 47.619 0.00 0.00 42.09 4.69
2850 5536 3.259374 CGGATATAGCATGGACCAAGACT 59.741 47.826 0.00 0.00 0.00 3.24
2856 5542 2.826128 TCTCACGGATATAGCATGGACC 59.174 50.000 0.00 0.00 0.00 4.46
2857 5543 4.400884 AGATCTCACGGATATAGCATGGAC 59.599 45.833 0.00 0.00 34.33 4.02
2858 5544 4.604156 AGATCTCACGGATATAGCATGGA 58.396 43.478 0.00 0.00 34.33 3.41
2859 5545 4.998671 AGATCTCACGGATATAGCATGG 57.001 45.455 0.00 0.00 34.33 3.66
2860 5546 7.094508 AGTAAGATCTCACGGATATAGCATG 57.905 40.000 0.00 0.00 34.33 4.06
2864 5550 9.004717 TCTCAAAGTAAGATCTCACGGATATAG 57.995 37.037 0.00 0.00 34.33 1.31
2870 5556 5.457148 CGAATCTCAAAGTAAGATCTCACGG 59.543 44.000 0.00 0.00 32.29 4.94
2872 5558 6.237701 GCACGAATCTCAAAGTAAGATCTCAC 60.238 42.308 0.00 0.00 32.29 3.51
2884 5570 6.738114 AGAAAGAAATTGCACGAATCTCAAA 58.262 32.000 0.00 0.00 0.00 2.69
2899 5585 9.526713 GCAAGAGAGAAAAAGAAAGAAAGAAAT 57.473 29.630 0.00 0.00 0.00 2.17
2900 5586 8.522830 TGCAAGAGAGAAAAAGAAAGAAAGAAA 58.477 29.630 0.00 0.00 0.00 2.52
2901 5587 8.055279 TGCAAGAGAGAAAAAGAAAGAAAGAA 57.945 30.769 0.00 0.00 0.00 2.52
2902 5588 7.630242 TGCAAGAGAGAAAAAGAAAGAAAGA 57.370 32.000 0.00 0.00 0.00 2.52
2903 5589 7.096147 GCATGCAAGAGAGAAAAAGAAAGAAAG 60.096 37.037 14.21 0.00 0.00 2.62
2904 5590 6.698766 GCATGCAAGAGAGAAAAAGAAAGAAA 59.301 34.615 14.21 0.00 0.00 2.52
2905 5591 6.040166 AGCATGCAAGAGAGAAAAAGAAAGAA 59.960 34.615 21.98 0.00 0.00 2.52
2906 5592 5.533903 AGCATGCAAGAGAGAAAAAGAAAGA 59.466 36.000 21.98 0.00 0.00 2.52
2907 5593 5.770417 AGCATGCAAGAGAGAAAAAGAAAG 58.230 37.500 21.98 0.00 0.00 2.62
2911 5597 6.128090 TGACATAGCATGCAAGAGAGAAAAAG 60.128 38.462 21.98 0.00 0.00 2.27
2916 5602 3.450096 AGTGACATAGCATGCAAGAGAGA 59.550 43.478 21.98 0.00 0.00 3.10
2942 5628 5.786401 ACTGAGATTTAATCAAGTCGCAC 57.214 39.130 7.74 0.00 29.52 5.34
2963 5649 3.366171 GGTTTGACTAGGTCTCAGTCGAC 60.366 52.174 7.70 7.70 44.44 4.20
2979 5665 6.432783 AGACAATCAATAAATGACGGGTTTGA 59.567 34.615 0.00 0.00 41.93 2.69
3040 5728 3.815401 GGGGCAATCCGCATGATATATAC 59.185 47.826 0.00 0.00 45.17 1.47
3076 5764 7.633018 TTTATCTTTAGATGTAGATGGGGCT 57.367 36.000 2.51 0.00 36.05 5.19
3077 5765 6.372937 GCTTTATCTTTAGATGTAGATGGGGC 59.627 42.308 2.51 0.00 36.05 5.80
3087 5775 8.627403 ACATGTGGATTGCTTTATCTTTAGATG 58.373 33.333 0.00 0.00 36.05 2.90
3107 5795 5.926542 CAGGTATATCGAACCCTAACATGTG 59.073 44.000 0.00 0.00 37.77 3.21
3121 5816 6.961359 TCAGTTGTTTTCACAGGTATATCG 57.039 37.500 0.00 0.00 33.22 2.92
3122 5817 8.547967 TCTTCAGTTGTTTTCACAGGTATATC 57.452 34.615 0.00 0.00 33.22 1.63
3123 5818 9.167311 GATCTTCAGTTGTTTTCACAGGTATAT 57.833 33.333 0.00 0.00 33.22 0.86
3124 5819 7.606456 GGATCTTCAGTTGTTTTCACAGGTATA 59.394 37.037 0.00 0.00 33.22 1.47
3125 5820 6.431234 GGATCTTCAGTTGTTTTCACAGGTAT 59.569 38.462 0.00 0.00 33.22 2.73
3126 5821 5.763204 GGATCTTCAGTTGTTTTCACAGGTA 59.237 40.000 0.00 0.00 33.22 3.08
3127 5822 4.580580 GGATCTTCAGTTGTTTTCACAGGT 59.419 41.667 0.00 0.00 33.22 4.00
3128 5823 4.580167 TGGATCTTCAGTTGTTTTCACAGG 59.420 41.667 0.00 0.00 33.22 4.00
3129 5824 5.756195 TGGATCTTCAGTTGTTTTCACAG 57.244 39.130 0.00 0.00 33.22 3.66
3130 5825 5.885352 TCTTGGATCTTCAGTTGTTTTCACA 59.115 36.000 0.00 0.00 0.00 3.58
3131 5826 6.377327 TCTTGGATCTTCAGTTGTTTTCAC 57.623 37.500 0.00 0.00 0.00 3.18
3132 5827 8.690203 TTATCTTGGATCTTCAGTTGTTTTCA 57.310 30.769 0.00 0.00 0.00 2.69
3134 5829 9.918630 CAATTATCTTGGATCTTCAGTTGTTTT 57.081 29.630 0.00 0.00 0.00 2.43
3135 5830 8.031277 GCAATTATCTTGGATCTTCAGTTGTTT 58.969 33.333 0.00 0.00 0.00 2.83
3136 5831 7.363268 GGCAATTATCTTGGATCTTCAGTTGTT 60.363 37.037 0.00 0.00 0.00 2.83
3137 5832 6.096001 GGCAATTATCTTGGATCTTCAGTTGT 59.904 38.462 0.00 0.00 0.00 3.32
3138 5833 6.501781 GGCAATTATCTTGGATCTTCAGTTG 58.498 40.000 0.00 0.00 0.00 3.16
3139 5834 5.297776 CGGCAATTATCTTGGATCTTCAGTT 59.702 40.000 0.00 0.00 0.00 3.16
3140 5835 4.818546 CGGCAATTATCTTGGATCTTCAGT 59.181 41.667 0.00 0.00 0.00 3.41
3141 5836 5.059161 TCGGCAATTATCTTGGATCTTCAG 58.941 41.667 0.00 0.00 0.00 3.02
3142 5837 5.034852 TCGGCAATTATCTTGGATCTTCA 57.965 39.130 0.00 0.00 0.00 3.02
3143 5838 5.106396 CCATCGGCAATTATCTTGGATCTTC 60.106 44.000 0.00 0.00 0.00 2.87
3144 5839 4.763793 CCATCGGCAATTATCTTGGATCTT 59.236 41.667 0.00 0.00 0.00 2.40
3145 5840 4.042062 TCCATCGGCAATTATCTTGGATCT 59.958 41.667 0.00 0.00 0.00 2.75
3146 5841 4.326826 TCCATCGGCAATTATCTTGGATC 58.673 43.478 0.00 0.00 0.00 3.36
3147 5842 4.371624 TCCATCGGCAATTATCTTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
3148 5843 3.855255 TCCATCGGCAATTATCTTGGA 57.145 42.857 0.00 0.00 0.00 3.53
3149 5844 5.882000 TCATATCCATCGGCAATTATCTTGG 59.118 40.000 0.00 0.00 0.00 3.61
3150 5845 6.990341 TCATATCCATCGGCAATTATCTTG 57.010 37.500 0.00 0.00 0.00 3.02
3151 5846 7.571919 AGATCATATCCATCGGCAATTATCTT 58.428 34.615 0.00 0.00 0.00 2.40
3152 5847 7.134362 AGATCATATCCATCGGCAATTATCT 57.866 36.000 0.00 0.00 0.00 1.98
3153 5848 7.255035 CCAAGATCATATCCATCGGCAATTATC 60.255 40.741 0.00 0.00 0.00 1.75
3154 5849 6.544931 CCAAGATCATATCCATCGGCAATTAT 59.455 38.462 0.00 0.00 0.00 1.28
3155 5850 5.882000 CCAAGATCATATCCATCGGCAATTA 59.118 40.000 0.00 0.00 0.00 1.40
3156 5851 4.703575 CCAAGATCATATCCATCGGCAATT 59.296 41.667 0.00 0.00 0.00 2.32
3157 5852 4.267536 CCAAGATCATATCCATCGGCAAT 58.732 43.478 0.00 0.00 0.00 3.56
3158 5853 3.559811 CCCAAGATCATATCCATCGGCAA 60.560 47.826 0.00 0.00 0.00 4.52
3159 5854 2.026915 CCCAAGATCATATCCATCGGCA 60.027 50.000 0.00 0.00 0.00 5.69
3160 5855 2.026822 ACCCAAGATCATATCCATCGGC 60.027 50.000 0.00 0.00 0.00 5.54
3161 5856 3.988976 ACCCAAGATCATATCCATCGG 57.011 47.619 0.00 0.00 0.00 4.18
3162 5857 6.051717 GGATAACCCAAGATCATATCCATCG 58.948 44.000 0.00 0.00 41.00 3.84
3163 5858 7.205515 AGGATAACCCAAGATCATATCCATC 57.794 40.000 11.50 3.18 42.85 3.51
3164 5859 8.700145 TTAGGATAACCCAAGATCATATCCAT 57.300 34.615 11.50 1.88 42.85 3.41
3165 5860 8.518720 TTTAGGATAACCCAAGATCATATCCA 57.481 34.615 11.50 0.00 42.85 3.41
3166 5861 9.232473 GTTTTAGGATAACCCAAGATCATATCC 57.768 37.037 0.00 0.00 41.43 2.59
3167 5862 9.793259 TGTTTTAGGATAACCCAAGATCATATC 57.207 33.333 0.00 0.00 37.41 1.63
3169 5864 9.793259 GATGTTTTAGGATAACCCAAGATCATA 57.207 33.333 0.00 0.00 37.41 2.15
3170 5865 8.506083 AGATGTTTTAGGATAACCCAAGATCAT 58.494 33.333 0.00 0.00 37.41 2.45
3171 5866 7.872138 AGATGTTTTAGGATAACCCAAGATCA 58.128 34.615 0.00 0.00 37.41 2.92
3172 5867 8.753497 AAGATGTTTTAGGATAACCCAAGATC 57.247 34.615 0.00 0.00 37.41 2.75
3173 5868 8.560903 AGAAGATGTTTTAGGATAACCCAAGAT 58.439 33.333 0.00 0.00 37.41 2.40
3174 5869 7.928873 AGAAGATGTTTTAGGATAACCCAAGA 58.071 34.615 0.00 0.00 37.41 3.02
3175 5870 8.049721 AGAGAAGATGTTTTAGGATAACCCAAG 58.950 37.037 0.00 0.00 37.41 3.61
3176 5871 7.928873 AGAGAAGATGTTTTAGGATAACCCAA 58.071 34.615 0.00 0.00 37.41 4.12
3177 5872 7.365652 GGAGAGAAGATGTTTTAGGATAACCCA 60.366 40.741 0.00 0.00 37.41 4.51
3178 5873 6.993308 GGAGAGAAGATGTTTTAGGATAACCC 59.007 42.308 0.00 0.00 36.73 4.11
3179 5874 7.496263 GTGGAGAGAAGATGTTTTAGGATAACC 59.504 40.741 0.00 0.00 0.00 2.85
3180 5875 7.222999 CGTGGAGAGAAGATGTTTTAGGATAAC 59.777 40.741 0.00 0.00 0.00 1.89
3181 5876 7.093465 ACGTGGAGAGAAGATGTTTTAGGATAA 60.093 37.037 0.00 0.00 0.00 1.75
3182 5877 6.380274 ACGTGGAGAGAAGATGTTTTAGGATA 59.620 38.462 0.00 0.00 0.00 2.59
3183 5878 5.187967 ACGTGGAGAGAAGATGTTTTAGGAT 59.812 40.000 0.00 0.00 0.00 3.24
3184 5879 4.527038 ACGTGGAGAGAAGATGTTTTAGGA 59.473 41.667 0.00 0.00 0.00 2.94
3185 5880 4.822026 ACGTGGAGAGAAGATGTTTTAGG 58.178 43.478 0.00 0.00 0.00 2.69
3186 5881 5.926542 TGAACGTGGAGAGAAGATGTTTTAG 59.073 40.000 0.00 0.00 0.00 1.85
3187 5882 5.849510 TGAACGTGGAGAGAAGATGTTTTA 58.150 37.500 0.00 0.00 0.00 1.52
3188 5883 4.703897 TGAACGTGGAGAGAAGATGTTTT 58.296 39.130 0.00 0.00 0.00 2.43
3189 5884 4.336889 TGAACGTGGAGAGAAGATGTTT 57.663 40.909 0.00 0.00 0.00 2.83
3190 5885 4.058817 GTTGAACGTGGAGAGAAGATGTT 58.941 43.478 0.00 0.00 0.00 2.71
3191 5886 3.322254 AGTTGAACGTGGAGAGAAGATGT 59.678 43.478 0.00 0.00 0.00 3.06
3192 5887 3.677121 CAGTTGAACGTGGAGAGAAGATG 59.323 47.826 0.00 0.00 0.00 2.90
3193 5888 3.862642 GCAGTTGAACGTGGAGAGAAGAT 60.863 47.826 0.00 0.00 0.00 2.40
3194 5889 2.545952 GCAGTTGAACGTGGAGAGAAGA 60.546 50.000 0.00 0.00 0.00 2.87
3195 5890 1.795286 GCAGTTGAACGTGGAGAGAAG 59.205 52.381 0.00 0.00 0.00 2.85
3196 5891 1.138069 TGCAGTTGAACGTGGAGAGAA 59.862 47.619 0.00 0.00 0.00 2.87
3197 5892 0.750249 TGCAGTTGAACGTGGAGAGA 59.250 50.000 0.00 0.00 0.00 3.10
3198 5893 1.143305 CTGCAGTTGAACGTGGAGAG 58.857 55.000 5.25 0.00 34.22 3.20
3199 5894 0.880278 GCTGCAGTTGAACGTGGAGA 60.880 55.000 16.64 0.00 34.22 3.71
3200 5895 1.571460 GCTGCAGTTGAACGTGGAG 59.429 57.895 16.64 10.30 35.37 3.86
3201 5896 1.891919 GGCTGCAGTTGAACGTGGA 60.892 57.895 16.64 0.00 0.00 4.02
3202 5897 2.639286 GGCTGCAGTTGAACGTGG 59.361 61.111 16.64 0.00 0.00 4.94
3203 5898 2.639286 GGGCTGCAGTTGAACGTG 59.361 61.111 16.64 0.00 0.00 4.49
3204 5899 2.594592 GGGGCTGCAGTTGAACGT 60.595 61.111 16.64 0.00 0.00 3.99
3205 5900 3.726517 CGGGGCTGCAGTTGAACG 61.727 66.667 16.64 9.54 0.00 3.95
3206 5901 4.043200 GCGGGGCTGCAGTTGAAC 62.043 66.667 16.64 0.00 34.15 3.18
3215 5910 3.839353 GATCTCATGGGCGGGGCTG 62.839 68.421 0.00 0.00 0.00 4.85
3216 5911 3.564218 GATCTCATGGGCGGGGCT 61.564 66.667 0.00 0.00 0.00 5.19
3217 5912 2.909457 TTTGATCTCATGGGCGGGGC 62.909 60.000 0.00 0.00 0.00 5.80
3218 5913 0.178981 ATTTGATCTCATGGGCGGGG 60.179 55.000 0.00 0.00 0.00 5.73
3219 5914 1.610522 GAATTTGATCTCATGGGCGGG 59.389 52.381 0.00 0.00 0.00 6.13
3220 5915 2.033801 GTGAATTTGATCTCATGGGCGG 59.966 50.000 0.00 0.00 0.00 6.13
3221 5916 2.684374 TGTGAATTTGATCTCATGGGCG 59.316 45.455 0.00 0.00 0.00 6.13
3222 5917 3.067742 CCTGTGAATTTGATCTCATGGGC 59.932 47.826 0.00 0.00 0.00 5.36
3223 5918 3.067742 GCCTGTGAATTTGATCTCATGGG 59.932 47.826 0.00 0.00 0.00 4.00
3224 5919 3.242969 CGCCTGTGAATTTGATCTCATGG 60.243 47.826 0.00 0.00 0.00 3.66
3225 5920 3.791122 GCGCCTGTGAATTTGATCTCATG 60.791 47.826 0.00 0.00 0.00 3.07
3226 5921 2.357009 GCGCCTGTGAATTTGATCTCAT 59.643 45.455 0.00 0.00 0.00 2.90
3227 5922 1.739466 GCGCCTGTGAATTTGATCTCA 59.261 47.619 0.00 0.00 0.00 3.27
3228 5923 1.739466 TGCGCCTGTGAATTTGATCTC 59.261 47.619 4.18 0.00 0.00 2.75
3229 5924 1.825090 TGCGCCTGTGAATTTGATCT 58.175 45.000 4.18 0.00 0.00 2.75
3230 5925 2.634982 TTGCGCCTGTGAATTTGATC 57.365 45.000 4.18 0.00 0.00 2.92
3231 5926 3.383620 TTTTGCGCCTGTGAATTTGAT 57.616 38.095 4.18 0.00 0.00 2.57
3232 5927 2.863137 GTTTTTGCGCCTGTGAATTTGA 59.137 40.909 4.18 0.00 0.00 2.69
3233 5928 2.032979 GGTTTTTGCGCCTGTGAATTTG 60.033 45.455 4.18 0.00 0.00 2.32
3234 5929 2.209273 GGTTTTTGCGCCTGTGAATTT 58.791 42.857 4.18 0.00 0.00 1.82
3235 5930 1.137872 TGGTTTTTGCGCCTGTGAATT 59.862 42.857 4.18 0.00 0.00 2.17
3236 5931 0.749649 TGGTTTTTGCGCCTGTGAAT 59.250 45.000 4.18 0.00 0.00 2.57
3237 5932 0.179124 GTGGTTTTTGCGCCTGTGAA 60.179 50.000 4.18 0.00 0.00 3.18
3238 5933 1.315981 TGTGGTTTTTGCGCCTGTGA 61.316 50.000 4.18 0.00 0.00 3.58
3239 5934 0.249405 ATGTGGTTTTTGCGCCTGTG 60.249 50.000 4.18 0.00 0.00 3.66
3240 5935 0.031994 GATGTGGTTTTTGCGCCTGT 59.968 50.000 4.18 0.00 0.00 4.00
3241 5936 0.031857 TGATGTGGTTTTTGCGCCTG 59.968 50.000 4.18 0.00 0.00 4.85
3242 5937 0.749649 TTGATGTGGTTTTTGCGCCT 59.250 45.000 4.18 0.00 0.00 5.52
3243 5938 1.526464 CTTTGATGTGGTTTTTGCGCC 59.474 47.619 4.18 0.00 0.00 6.53
3244 5939 1.526464 CCTTTGATGTGGTTTTTGCGC 59.474 47.619 0.00 0.00 0.00 6.09
3245 5940 2.134346 CCCTTTGATGTGGTTTTTGCG 58.866 47.619 0.00 0.00 0.00 4.85
3246 5941 3.392882 CTCCCTTTGATGTGGTTTTTGC 58.607 45.455 0.00 0.00 0.00 3.68
3247 5942 3.181467 TGCTCCCTTTGATGTGGTTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
3248 5943 3.037549 TGCTCCCTTTGATGTGGTTTTT 58.962 40.909 0.00 0.00 0.00 1.94
3249 5944 2.365293 GTGCTCCCTTTGATGTGGTTTT 59.635 45.455 0.00 0.00 0.00 2.43
3250 5945 1.963515 GTGCTCCCTTTGATGTGGTTT 59.036 47.619 0.00 0.00 0.00 3.27
3251 5946 1.145738 AGTGCTCCCTTTGATGTGGTT 59.854 47.619 0.00 0.00 0.00 3.67
3252 5947 0.773644 AGTGCTCCCTTTGATGTGGT 59.226 50.000 0.00 0.00 0.00 4.16
3253 5948 1.171308 CAGTGCTCCCTTTGATGTGG 58.829 55.000 0.00 0.00 0.00 4.17
3254 5949 1.171308 CCAGTGCTCCCTTTGATGTG 58.829 55.000 0.00 0.00 0.00 3.21
3255 5950 0.038744 CCCAGTGCTCCCTTTGATGT 59.961 55.000 0.00 0.00 0.00 3.06
3256 5951 0.329261 TCCCAGTGCTCCCTTTGATG 59.671 55.000 0.00 0.00 0.00 3.07
3257 5952 1.064166 CATCCCAGTGCTCCCTTTGAT 60.064 52.381 0.00 0.00 0.00 2.57
3258 5953 0.329261 CATCCCAGTGCTCCCTTTGA 59.671 55.000 0.00 0.00 0.00 2.69
3259 5954 1.318158 GCATCCCAGTGCTCCCTTTG 61.318 60.000 0.00 0.00 41.82 2.77
3260 5955 1.000396 GCATCCCAGTGCTCCCTTT 60.000 57.895 0.00 0.00 41.82 3.11
3261 5956 2.679716 GCATCCCAGTGCTCCCTT 59.320 61.111 0.00 0.00 41.82 3.95
3267 5962 2.436417 TGAGTTTAAGCATCCCAGTGC 58.564 47.619 0.00 0.00 45.38 4.40
3268 5963 4.082571 CCTTTGAGTTTAAGCATCCCAGTG 60.083 45.833 0.00 0.00 0.00 3.66
3269 5964 4.082125 CCTTTGAGTTTAAGCATCCCAGT 58.918 43.478 0.00 0.00 0.00 4.00
3270 5965 4.082125 ACCTTTGAGTTTAAGCATCCCAG 58.918 43.478 0.00 0.00 0.00 4.45
3271 5966 3.826157 CACCTTTGAGTTTAAGCATCCCA 59.174 43.478 0.00 0.00 0.00 4.37
3272 5967 3.367395 GCACCTTTGAGTTTAAGCATCCC 60.367 47.826 0.00 0.00 0.00 3.85
3273 5968 3.367395 GGCACCTTTGAGTTTAAGCATCC 60.367 47.826 0.00 0.00 0.00 3.51
3274 5969 3.255642 TGGCACCTTTGAGTTTAAGCATC 59.744 43.478 0.00 0.00 0.00 3.91
3275 5970 3.005791 GTGGCACCTTTGAGTTTAAGCAT 59.994 43.478 6.29 0.00 0.00 3.79
3276 5971 2.360801 GTGGCACCTTTGAGTTTAAGCA 59.639 45.455 6.29 0.00 0.00 3.91
3277 5972 2.604614 CGTGGCACCTTTGAGTTTAAGC 60.605 50.000 12.86 0.00 0.00 3.09
3278 5973 2.875933 TCGTGGCACCTTTGAGTTTAAG 59.124 45.455 12.86 0.00 0.00 1.85
3279 5974 2.920524 TCGTGGCACCTTTGAGTTTAA 58.079 42.857 12.86 0.00 0.00 1.52
3280 5975 2.623878 TCGTGGCACCTTTGAGTTTA 57.376 45.000 12.86 0.00 0.00 2.01
3281 5976 1.981256 ATCGTGGCACCTTTGAGTTT 58.019 45.000 12.86 0.00 0.00 2.66
3282 5977 1.981256 AATCGTGGCACCTTTGAGTT 58.019 45.000 12.86 0.00 0.00 3.01
3283 5978 1.608590 CAAATCGTGGCACCTTTGAGT 59.391 47.619 24.90 10.06 31.76 3.41
3284 5979 1.879380 TCAAATCGTGGCACCTTTGAG 59.121 47.619 26.48 9.51 33.84 3.02
3285 5980 1.606668 GTCAAATCGTGGCACCTTTGA 59.393 47.619 26.48 26.48 35.78 2.69
3286 5981 1.336440 TGTCAAATCGTGGCACCTTTG 59.664 47.619 23.90 23.90 36.75 2.77
3287 5982 1.608590 CTGTCAAATCGTGGCACCTTT 59.391 47.619 12.86 9.39 36.75 3.11
3288 5983 1.238439 CTGTCAAATCGTGGCACCTT 58.762 50.000 12.86 3.00 36.75 3.50
3289 5984 0.108585 ACTGTCAAATCGTGGCACCT 59.891 50.000 12.86 0.00 36.75 4.00
3290 5985 0.951558 AACTGTCAAATCGTGGCACC 59.048 50.000 12.86 0.00 36.75 5.01
3291 5986 1.069227 GGAACTGTCAAATCGTGGCAC 60.069 52.381 7.79 7.79 36.75 5.01
3292 5987 1.234821 GGAACTGTCAAATCGTGGCA 58.765 50.000 0.00 0.00 40.39 4.92
3293 5988 1.234821 TGGAACTGTCAAATCGTGGC 58.765 50.000 0.00 0.00 0.00 5.01
3294 5989 3.980646 TTTGGAACTGTCAAATCGTGG 57.019 42.857 0.00 0.00 0.00 4.94
3295 5990 3.670055 GCATTTGGAACTGTCAAATCGTG 59.330 43.478 4.91 0.00 41.28 4.35
3296 5991 3.305335 GGCATTTGGAACTGTCAAATCGT 60.305 43.478 4.91 0.00 41.28 3.73
3310 6005 4.460948 AGCTATTTGTTGAGGCATTTGG 57.539 40.909 0.00 0.00 0.00 3.28
3319 6014 3.691118 CCTTGCTGCTAGCTATTTGTTGA 59.309 43.478 17.23 0.00 42.97 3.18
3322 6017 2.019984 GCCTTGCTGCTAGCTATTTGT 58.980 47.619 17.23 0.00 42.97 2.83
3386 6082 4.920376 AGGACATGAACGTGAAAAGTTTG 58.080 39.130 0.00 0.00 39.06 2.93
3403 6099 1.627329 AGCAATGAGAGCAGAAGGACA 59.373 47.619 0.00 0.00 0.00 4.02
3417 6113 2.228138 ACAACAAACAGCCAGCAATG 57.772 45.000 0.00 0.00 0.00 2.82
3445 6141 9.882856 GTTTTCTTATATTCGTCTTTCGTACAG 57.117 33.333 0.00 0.00 40.80 2.74
3491 6187 5.164620 TGTCATGAAATAGTTGAGAGCCA 57.835 39.130 0.00 0.00 0.00 4.75
3495 6191 7.335171 CCACTGAATGTCATGAAATAGTTGAGA 59.665 37.037 0.00 0.00 0.00 3.27
3583 6279 9.421806 TGAAATATGCGAAATTTCACTGAATTT 57.578 25.926 17.99 14.36 44.39 1.82
3584 6280 8.984891 TGAAATATGCGAAATTTCACTGAATT 57.015 26.923 17.99 7.70 44.39 2.17
3591 6287 6.047870 CCCCATTGAAATATGCGAAATTTCA 58.952 36.000 17.99 13.72 46.40 2.69
3592 6288 6.048509 ACCCCATTGAAATATGCGAAATTTC 58.951 36.000 8.20 8.20 41.60 2.17
3593 6289 5.988287 ACCCCATTGAAATATGCGAAATTT 58.012 33.333 0.00 0.00 0.00 1.82
3594 6290 5.612725 ACCCCATTGAAATATGCGAAATT 57.387 34.783 0.00 0.00 0.00 1.82
3595 6291 5.128499 TGAACCCCATTGAAATATGCGAAAT 59.872 36.000 0.00 0.00 0.00 2.17
3596 6292 4.464244 TGAACCCCATTGAAATATGCGAAA 59.536 37.500 0.00 0.00 0.00 3.46
3597 6293 4.019858 TGAACCCCATTGAAATATGCGAA 58.980 39.130 0.00 0.00 0.00 4.70
3598 6294 3.625853 TGAACCCCATTGAAATATGCGA 58.374 40.909 0.00 0.00 0.00 5.10
3599 6295 4.383850 TTGAACCCCATTGAAATATGCG 57.616 40.909 0.00 0.00 0.00 4.73
3600 6296 8.907222 ATATTTTGAACCCCATTGAAATATGC 57.093 30.769 0.00 0.00 31.11 3.14
3634 6330 9.111613 AAGTTTGAATCTGCATCAAAATTTTGA 57.888 25.926 30.27 30.27 46.67 2.69
3640 6336 9.761504 TGAAATAAGTTTGAATCTGCATCAAAA 57.238 25.926 13.97 2.04 45.43 2.44
3641 6337 9.761504 TTGAAATAAGTTTGAATCTGCATCAAA 57.238 25.926 9.38 9.38 42.73 2.69
3642 6338 9.761504 TTTGAAATAAGTTTGAATCTGCATCAA 57.238 25.926 0.00 0.00 35.11 2.57
3643 6339 9.414295 CTTTGAAATAAGTTTGAATCTGCATCA 57.586 29.630 0.00 0.00 0.00 3.07
3644 6340 9.415544 ACTTTGAAATAAGTTTGAATCTGCATC 57.584 29.630 0.00 0.00 34.81 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.