AutoCloner

Multiple sequence alignment - TraesCS3B01G493800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G493800	chr3B	100.000	2615	0	0	1	2615	739030702	739028088	0.000000e+00	4830.0
1	TraesCS3B01G493800	chr3B	83.412	211	22	7	2418	2615	159519094	159519304	1.600000e-42	183.0
2	TraesCS3B01G493800	chr3B	83.654	104	12	5	2289	2389	472628616	472628717	2.770000e-15	93.5
3	TraesCS3B01G493800	chr1A	97.642	1060	16	6	1559	2615	312611309	312612362	0.000000e+00	1810.0
4	TraesCS3B01G493800	chr1A	84.058	276	44	0	1033	1308	256985325	256985050	1.540000e-67	267.0
5	TraesCS3B01G493800	chr1A	83.415	205	21	7	2424	2615	357788620	357788416	7.440000e-41	178.0
6	TraesCS3B01G493800	chr3A	97.269	1062	11	7	1558	2615	616496053	616497100	0.000000e+00	1784.0
7	TraesCS3B01G493800	chr3A	91.166	815	40	18	1	786	692964189	692963378	0.000000e+00	1077.0
8	TraesCS3B01G493800	chr3A	88.060	670	33	15	1558	2201	8496557	8497205	0.000000e+00	750.0
9	TraesCS3B01G493800	chr3A	90.517	580	32	10	999	1558	692963155	692962579	0.000000e+00	745.0
10	TraesCS3B01G493800	chr3A	87.124	466	31	15	1848	2305	745072425	745071981	3.890000e-138	501.0
11	TraesCS3B01G493800	chr3A	86.910	466	33	15	1848	2305	744995332	744994887	5.030000e-137	497.0
12	TraesCS3B01G493800	chr3A	82.005	389	30	18	1832	2217	749486058	749486409	7.080000e-76	294.0
13	TraesCS3B01G493800	chr3A	94.595	185	10	0	2384	2568	745071980	745071796	1.180000e-73	287.0
14	TraesCS3B01G493800	chr3A	94.054	185	11	0	2384	2568	744920498	744920314	5.510000e-72	281.0
15	TraesCS3B01G493800	chr3A	93.651	189	11	1	2384	2571	744994886	744994698	5.510000e-72	281.0
16	TraesCS3B01G493800	chr3A	92.683	82	6	0	884	965	692963303	692963222	4.570000e-23	119.0
17	TraesCS3B01G493800	chr3A	78.862	123	22	4	96	216	569891076	569891196	2.160000e-11	80.5
18	TraesCS3B01G493800	chr3D	91.429	805	47	13	1	783	556029523	556028719	0.000000e+00	1085.0
19	TraesCS3B01G493800	chr3D	91.141	587	32	12	991	1558	556028508	556027923	0.000000e+00	778.0
20	TraesCS3B01G493800	chr3D	93.182	88	6	0	2303	2390	319344150	319344237	2.110000e-26	130.0
21	TraesCS3B01G493800	chr5D	89.237	799	38	15	1559	2328	54720197	54719418	0.000000e+00	955.0
22	TraesCS3B01G493800	chr5D	95.238	252	12	0	2317	2568	54716432	54716181	1.460000e-107	399.0
23	TraesCS3B01G493800	chr5D	94.318	88	5	0	2303	2390	434549312	434549399	4.540000e-28	135.0
24	TraesCS3B01G493800	chr1D	90.338	414	25	10	1832	2234	290451164	290450755	1.780000e-146	529.0
25	TraesCS3B01G493800	chr1D	94.737	38	1	1	2386	2422	360359145	360359108	1.010000e-04	58.4
26	TraesCS3B01G493800	chr2D	86.939	490	22	10	1559	2024	218271763	218271292	1.790000e-141	512.0
27	TraesCS3B01G493800	chr2D	89.547	287	13	7	2025	2308	218271150	218270878	5.360000e-92	348.0
28	TraesCS3B01G493800	chr2D	96.757	185	6	0	2384	2568	218270885	218270701	2.530000e-80	309.0
29	TraesCS3B01G493800	chr2D	91.919	99	5	3	2303	2399	38220623	38220526	4.540000e-28	135.0
30	TraesCS3B01G493800	chr2D	90.385	104	6	3	2300	2399	208540140	208540243	1.630000e-27	134.0
31	TraesCS3B01G493800	chr2D	91.489	94	8	0	2303	2396	184121945	184122038	2.110000e-26	130.0
32	TraesCS3B01G493800	chr7D	89.512	410	31	8	1834	2234	27666100	27666506	2.320000e-140	508.0
33	TraesCS3B01G493800	chr7D	88.780	205	17	3	1629	1830	572186561	572186360	2.010000e-61	246.0
34	TraesCS3B01G493800	chr7D	82.383	193	27	6	2235	2424	572186349	572186161	7.490000e-36	161.0
35	TraesCS3B01G493800	chr4D	88.564	411	35	8	1835	2234	16536841	16537250	3.020000e-134	488.0
36	TraesCS3B01G493800	chr4D	89.109	101	10	1	2295	2395	252173697	252173796	9.830000e-25	124.0
37	TraesCS3B01G493800	chr6D	87.805	410	37	7	1835	2234	329442465	329442059	3.940000e-128	468.0
38	TraesCS3B01G493800	chrUn	89.607	356	15	5	1558	1893	362451269	362451622	1.440000e-117	433.0
39	TraesCS3B01G493800	chrUn	83.412	211	22	7	2418	2615	153246560	153246770	1.600000e-42	183.0
40	TraesCS3B01G493800	chrUn	91.549	71	5	1	2235	2305	153246428	153246497	2.140000e-16	97.1
41	TraesCS3B01G493800	chr4B	83.777	413	38	12	1833	2235	441157428	441157821	5.320000e-97	364.0
42	TraesCS3B01G493800	chr4B	88.571	280	23	5	1557	1830	626766469	626766193	5.390000e-87	331.0
43	TraesCS3B01G493800	chr4B	93.836	146	8	1	2424	2568	626766053	626765908	4.380000e-53	219.0
44	TraesCS3B01G493800	chr4B	95.349	43	2	0	2573	2615	626765875	626765833	4.670000e-08	69.4
45	TraesCS3B01G493800	chr2A	88.929	280	23	4	1557	1830	669436177	669436454	3.220000e-89	339.0
46	TraesCS3B01G493800	chr2A	89.933	149	13	2	2418	2565	669436596	669436743	9.550000e-45	191.0
47	TraesCS3B01G493800	chr2A	97.619	42	1	0	2574	2615	669436780	669436821	3.610000e-09	73.1
48	TraesCS3B01G493800	chr2A	93.617	47	3	0	1559	1605	773226963	773227009	1.300000e-08	71.3
49	TraesCS3B01G493800	chr1B	85.214	257	38	0	1052	1308	296811244	296810988	5.550000e-67	265.0
50	TraesCS3B01G493800	chr7B	83.886	211	21	7	2418	2615	363190862	363191072	3.440000e-44	189.0
51	TraesCS3B01G493800	chr7B	94.595	37	1	1	2386	2421	376804793	376804757	3.640000e-04	56.5
52	TraesCS3B01G493800	chr2B	78.205	312	41	12	1052	1354	775373664	775373371	9.620000e-40	174.0
53	TraesCS3B01G493800	chr6B	81.818	110	15	4	2284	2389	447890717	447890609	1.290000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G493800	chr3B	739028088	739030702	2614	True	4830.000000	4830	100.000000	1	2615	1	chr3B.!!$R1	2614
1	TraesCS3B01G493800	chr1A	312611309	312612362	1053	False	1810.000000	1810	97.642000	1559	2615	1	chr1A.!!$F1	1056
2	TraesCS3B01G493800	chr3A	616496053	616497100	1047	False	1784.000000	1784	97.269000	1558	2615	1	chr3A.!!$F3	1057
3	TraesCS3B01G493800	chr3A	8496557	8497205	648	False	750.000000	750	88.060000	1558	2201	1	chr3A.!!$F1	643
4	TraesCS3B01G493800	chr3A	692962579	692964189	1610	True	647.000000	1077	91.455333	1	1558	3	chr3A.!!$R2	1557
5	TraesCS3B01G493800	chr3A	745071796	745072425	629	True	394.000000	501	90.859500	1848	2568	2	chr3A.!!$R4	720
6	TraesCS3B01G493800	chr3A	744994698	744995332	634	True	389.000000	497	90.280500	1848	2571	2	chr3A.!!$R3	723
7	TraesCS3B01G493800	chr3D	556027923	556029523	1600	True	931.500000	1085	91.285000	1	1558	2	chr3D.!!$R1	1557
8	TraesCS3B01G493800	chr5D	54716181	54720197	4016	True	677.000000	955	92.237500	1559	2568	2	chr5D.!!$R1	1009
9	TraesCS3B01G493800	chr2D	218270701	218271763	1062	True	389.666667	512	91.081000	1559	2568	3	chr2D.!!$R2	1009
10	TraesCS3B01G493800	chr4B	626765833	626766469	636	True	206.466667	331	92.585333	1557	2615	3	chr4B.!!$R1	1058
11	TraesCS3B01G493800	chr2A	669436177	669436821	644	False	201.033333	339	92.160333	1557	2615	3	chr2A.!!$F2	1058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
805	835	0.179215	GTTCGGCACTGATTCTTGCG	60.179	55.0	5.19	0.0	39.81	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2496	5841	2.746904	TCGAACATTCATCGCAACCAAT	59.253	40.909	0.0	0.0	40.04	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
277	285	7.227711	GCACTGAACTACTACTGATCTGATCTA	59.772	40.741	17.82	3.28	0.00	1.98
283	313	9.733556	AACTACTACTGATCTGATCTACCATAG	57.266	37.037	17.82	14.82	0.00	2.23
287	317	8.397957	ACTACTGATCTGATCTACCATAGGATT	58.602	37.037	17.82	0.00	0.00	3.01
296	326	7.445121	TGATCTACCATAGGATTGATGACAAC	58.555	38.462	0.00	0.00	38.90	3.32
307	337	6.494491	AGGATTGATGACAACCTTTTGAATCA	59.506	34.615	0.00	0.00	38.90	2.57
309	339	7.820872	GGATTGATGACAACCTTTTGAATCATT	59.179	33.333	0.00	5.70	38.24	2.57
315	345	6.165700	ACAACCTTTTGAATCATTTCTGCT	57.834	33.333	0.00	0.00	36.48	4.24
316	346	5.987347	ACAACCTTTTGAATCATTTCTGCTG	59.013	36.000	0.00	0.00	36.48	4.41
317	347	6.183360	ACAACCTTTTGAATCATTTCTGCTGA	60.183	34.615	0.00	0.00	36.48	4.26
319	349	6.628185	ACCTTTTGAATCATTTCTGCTGATC	58.372	36.000	0.00	0.00	32.22	2.92
320	350	6.436532	ACCTTTTGAATCATTTCTGCTGATCT	59.563	34.615	0.00	0.00	32.22	2.75
321	351	6.973474	CCTTTTGAATCATTTCTGCTGATCTC	59.027	38.462	0.00	0.00	32.22	2.75
594	624	4.719106	ACCGAGGAGGACGCGACT	62.719	66.667	15.93	11.01	45.76	4.18
747	777	3.628032	CCGACAAGTACATCTGAGCTAGA	59.372	47.826	0.00	0.00	40.37	2.43
768	798	1.109920	ATCAGCTCATCGCCGGTACT	61.110	55.000	1.90	0.00	40.39	2.73
787	817	2.339712	GCTGCCGTTTGCCATTGT	59.660	55.556	0.00	0.00	40.16	2.71
788	818	1.300853	GCTGCCGTTTGCCATTGTT	60.301	52.632	0.00	0.00	40.16	2.83
800	830	2.549633	CCATTGTTCGGCACTGATTC	57.450	50.000	0.00	0.00	30.29	2.52
801	831	2.086869	CCATTGTTCGGCACTGATTCT	58.913	47.619	0.00	0.00	30.29	2.40
802	832	2.489329	CCATTGTTCGGCACTGATTCTT	59.511	45.455	0.00	0.00	30.29	2.52
803	833	3.495193	CATTGTTCGGCACTGATTCTTG	58.505	45.455	0.00	0.00	30.29	3.02
804	834	0.874390	TGTTCGGCACTGATTCTTGC	59.126	50.000	3.09	3.09	38.06	4.01
805	835	0.179215	GTTCGGCACTGATTCTTGCG	60.179	55.000	5.19	0.00	39.81	4.85
806	836	1.911293	TTCGGCACTGATTCTTGCGC	61.911	55.000	0.00	0.00	39.81	6.09
807	837	2.486966	GGCACTGATTCTTGCGCC	59.513	61.111	4.18	0.00	39.81	6.53
808	838	2.099062	GCACTGATTCTTGCGCCG	59.901	61.111	4.18	0.00	0.00	6.46
809	839	2.390599	GCACTGATTCTTGCGCCGA	61.391	57.895	4.18	0.00	0.00	5.54
810	840	1.911293	GCACTGATTCTTGCGCCGAA	61.911	55.000	4.18	8.46	0.00	4.30
811	841	0.516877	CACTGATTCTTGCGCCGAAA	59.483	50.000	4.18	0.00	0.00	3.46
812	842	0.798776	ACTGATTCTTGCGCCGAAAG	59.201	50.000	4.18	0.00	0.00	2.62
863	893	5.760193	GCATCTCGCTATCTTATGAACTG	57.240	43.478	0.00	0.00	37.77	3.16
864	894	5.226396	GCATCTCGCTATCTTATGAACTGT	58.774	41.667	0.00	0.00	37.77	3.55
865	895	6.382608	GCATCTCGCTATCTTATGAACTGTA	58.617	40.000	0.00	0.00	37.77	2.74
866	896	6.306837	GCATCTCGCTATCTTATGAACTGTAC	59.693	42.308	0.00	0.00	37.77	2.90
867	897	6.315091	TCTCGCTATCTTATGAACTGTACC	57.685	41.667	0.00	0.00	0.00	3.34
868	898	5.826208	TCTCGCTATCTTATGAACTGTACCA	59.174	40.000	0.00	0.00	0.00	3.25
869	899	6.320418	TCTCGCTATCTTATGAACTGTACCAA	59.680	38.462	0.00	0.00	0.00	3.67
870	900	7.014326	TCTCGCTATCTTATGAACTGTACCAAT	59.986	37.037	0.00	0.00	0.00	3.16
872	902	8.635328	TCGCTATCTTATGAACTGTACCAATAA	58.365	33.333	0.00	0.00	0.00	1.40
925	964	2.231478	ACATCTCAACCACCACTCGTAG	59.769	50.000	0.00	0.00	0.00	3.51
965	1004	1.474879	TGATCATGTCGCGTGGACTAA	59.525	47.619	5.77	0.00	46.24	2.24
966	1005	2.094442	TGATCATGTCGCGTGGACTAAA	60.094	45.455	5.77	0.00	46.24	1.85
967	1006	1.705256	TCATGTCGCGTGGACTAAAC	58.295	50.000	5.77	0.00	46.24	2.01
968	1007	1.271379	TCATGTCGCGTGGACTAAACT	59.729	47.619	5.77	0.00	46.24	2.66
969	1008	2.488937	TCATGTCGCGTGGACTAAACTA	59.511	45.455	5.77	0.00	46.24	2.24
971	1010	1.881973	TGTCGCGTGGACTAAACTAGT	59.118	47.619	5.77	0.00	46.24	2.57
997	1095	0.534203	AAAGAGCTCGGCGGACAAAA	60.534	50.000	7.21	0.00	0.00	2.44
1011	1109	0.602638	ACAAAACGATGGAGAGCGCA	60.603	50.000	11.47	0.00	33.02	6.09
1262	1366	4.684134	GGTGCTGGTGGGCCACAT	62.684	66.667	35.69	0.00	40.46	3.21
1368	1481	0.543174	AGCCCCTCAAGTTCGTCTCT	60.543	55.000	0.00	0.00	0.00	3.10
1380	1493	0.598562	TCGTCTCTGAACAGGTGAGC	59.401	55.000	1.93	0.00	0.00	4.26
1408	1524	2.660064	GCCCACTCGATCCACACCT	61.660	63.158	0.00	0.00	0.00	4.00
1410	1526	0.972983	CCCACTCGATCCACACCTCT	60.973	60.000	0.00	0.00	0.00	3.69
1411	1527	0.898320	CCACTCGATCCACACCTCTT	59.102	55.000	0.00	0.00	0.00	2.85
1413	1529	1.821753	CACTCGATCCACACCTCTTCT	59.178	52.381	0.00	0.00	0.00	2.85
1455	1579	7.256286	ACCTAACACACTCGATATTACAGTTC	58.744	38.462	0.00	0.00	0.00	3.01
1507	1631	1.679305	AGCGTGATCGAGACCACCT	60.679	57.895	9.00	5.63	39.71	4.00
1508	1632	1.226717	GCGTGATCGAGACCACCTC	60.227	63.158	9.00	0.00	39.71	3.85
1548	1672	0.514691	CTTGCAAGACGTTCCTGCTC	59.485	55.000	22.31	0.00	0.00	4.26
1687	1816	3.991773	CCGAACTTCGTTACCAGAAATCA	59.008	43.478	10.22	0.00	38.40	2.57
1688	1817	4.630069	CCGAACTTCGTTACCAGAAATCAT	59.370	41.667	10.22	0.00	38.40	2.45
1689	1818	5.121768	CCGAACTTCGTTACCAGAAATCATT	59.878	40.000	10.22	0.00	38.40	2.57
1691	1820	7.148540	CCGAACTTCGTTACCAGAAATCATTAA	60.149	37.037	10.22	0.00	38.40	1.40
2496	5841	6.037062	CACGAGGCAGATGTAATTTGTGATAA	59.963	38.462	0.00	0.00	29.81	1.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
100	101	3.382832	AGGACCACCTTCTCGCCG	61.383	66.667	0.00	0.00	45.36	6.46
277	285	5.456921	AAGGTTGTCATCAATCCTATGGT	57.543	39.130	0.00	0.00	35.46	3.55
283	313	6.690530	TGATTCAAAAGGTTGTCATCAATCC	58.309	36.000	0.00	0.00	35.46	3.01
287	317	7.868922	CAGAAATGATTCAAAAGGTTGTCATCA	59.131	33.333	0.00	6.57	38.61	3.07
296	326	6.864342	AGATCAGCAGAAATGATTCAAAAGG	58.136	36.000	0.00	0.00	37.52	3.11
307	337	3.196469	TGGAACGAGAGATCAGCAGAAAT	59.804	43.478	0.00	0.00	34.15	2.17
309	339	2.165234	CTGGAACGAGAGATCAGCAGAA	59.835	50.000	0.00	0.00	34.15	3.02
705	735	1.369321	GATCTCCATGAGGACCGCC	59.631	63.158	0.00	0.00	39.61	6.13
709	739	1.006805	CGGCGATCTCCATGAGGAC	60.007	63.158	0.00	0.00	39.61	3.85
783	813	2.095059	GCAAGAATCAGTGCCGAACAAT	60.095	45.455	0.00	0.00	34.58	2.71
786	816	0.179215	CGCAAGAATCAGTGCCGAAC	60.179	55.000	3.81	0.00	37.47	3.95
787	817	1.911293	GCGCAAGAATCAGTGCCGAA	61.911	55.000	0.30	0.00	37.47	4.30
788	818	2.390599	GCGCAAGAATCAGTGCCGA	61.391	57.895	0.30	0.00	37.47	5.54
794	824	0.097674	CCTTTCGGCGCAAGAATCAG	59.902	55.000	20.56	9.37	43.02	2.90
795	825	0.321210	TCCTTTCGGCGCAAGAATCA	60.321	50.000	20.56	0.00	43.02	2.57
796	826	0.375106	CTCCTTTCGGCGCAAGAATC	59.625	55.000	20.56	0.00	43.02	2.52
797	827	0.036388	TCTCCTTTCGGCGCAAGAAT	60.036	50.000	20.56	0.00	43.02	2.40
798	828	0.250124	TTCTCCTTTCGGCGCAAGAA	60.250	50.000	20.56	11.88	43.02	2.52
799	829	0.036388	ATTCTCCTTTCGGCGCAAGA	60.036	50.000	20.56	4.98	43.02	3.02
800	830	0.375106	GATTCTCCTTTCGGCGCAAG	59.625	55.000	12.38	12.38	43.44	4.01
801	831	0.321210	TGATTCTCCTTTCGGCGCAA	60.321	50.000	10.83	0.00	0.00	4.85
802	832	0.107703	ATGATTCTCCTTTCGGCGCA	60.108	50.000	10.83	0.00	0.00	6.09
803	833	0.583917	GATGATTCTCCTTTCGGCGC	59.416	55.000	0.00	0.00	0.00	6.53
804	834	1.939974	TGATGATTCTCCTTTCGGCG	58.060	50.000	0.00	0.00	0.00	6.46
805	835	3.009723	TGTTGATGATTCTCCTTTCGGC	58.990	45.455	0.00	0.00	0.00	5.54
806	836	3.064545	GCTGTTGATGATTCTCCTTTCGG	59.935	47.826	0.00	0.00	0.00	4.30
807	837	3.937706	AGCTGTTGATGATTCTCCTTTCG	59.062	43.478	0.00	0.00	0.00	3.46
808	838	6.992063	TTAGCTGTTGATGATTCTCCTTTC	57.008	37.500	0.00	0.00	0.00	2.62
809	839	7.765695	TTTTAGCTGTTGATGATTCTCCTTT	57.234	32.000	0.00	0.00	0.00	3.11
810	840	7.765695	TTTTTAGCTGTTGATGATTCTCCTT	57.234	32.000	0.00	0.00	0.00	3.36
907	946	2.281539	TCTACGAGTGGTGGTTGAGA	57.718	50.000	0.00	0.00	0.00	3.27
909	948	3.133362	ACTTTTCTACGAGTGGTGGTTGA	59.867	43.478	0.00	0.00	0.00	3.18
925	964	3.813166	TCACGTCCATTTCTCCACTTTTC	59.187	43.478	0.00	0.00	0.00	2.29
965	1004	4.561105	CGAGCTCTTTTCTTGGACTAGTT	58.439	43.478	12.85	0.00	0.00	2.24
966	1005	3.056465	CCGAGCTCTTTTCTTGGACTAGT	60.056	47.826	12.85	0.00	37.30	2.57
967	1006	3.516615	CCGAGCTCTTTTCTTGGACTAG	58.483	50.000	12.85	0.00	37.30	2.57
968	1007	2.353803	GCCGAGCTCTTTTCTTGGACTA	60.354	50.000	12.85	0.00	37.30	2.59
969	1008	1.609320	GCCGAGCTCTTTTCTTGGACT	60.609	52.381	12.85	0.00	37.30	3.85
971	1010	0.670546	CGCCGAGCTCTTTTCTTGGA	60.671	55.000	12.85	0.00	37.30	3.53
972	1011	1.639298	CCGCCGAGCTCTTTTCTTGG	61.639	60.000	12.85	4.63	38.01	3.61
974	1013	0.670854	GTCCGCCGAGCTCTTTTCTT	60.671	55.000	12.85	0.00	0.00	2.52
975	1014	1.079750	GTCCGCCGAGCTCTTTTCT	60.080	57.895	12.85	0.00	0.00	2.52
977	1016	0.534203	TTTGTCCGCCGAGCTCTTTT	60.534	50.000	12.85	0.00	0.00	2.27
997	1095	4.521062	GGCTGCGCTCTCCATCGT	62.521	66.667	9.73	0.00	0.00	3.73
1167	1271	3.003763	AACGAGCCCACCTCCTCC	61.004	66.667	0.00	0.00	37.27	4.30
1388	1504	4.451150	TGTGGATCGAGTGGGCGC	62.451	66.667	0.00	0.00	0.00	6.53
1394	1510	2.096248	GAGAAGAGGTGTGGATCGAGT	58.904	52.381	0.00	0.00	0.00	4.18
1408	1524	0.991920	GTTCATGGTGGGGGAGAAGA	59.008	55.000	0.00	0.00	0.00	2.87
1410	1526	0.838554	TCGTTCATGGTGGGGGAGAA	60.839	55.000	0.00	0.00	0.00	2.87
1411	1527	0.838554	TTCGTTCATGGTGGGGGAGA	60.839	55.000	0.00	0.00	0.00	3.71
1413	1529	1.377229	GTTCGTTCATGGTGGGGGA	59.623	57.895	0.00	0.00	0.00	4.81
1522	1646	2.058829	AACGTCTTGCAAGGGCGTTG	62.059	55.000	36.86	21.44	45.35	4.10
1524	1648	2.203153	AACGTCTTGCAAGGGCGT	60.203	55.556	30.02	30.02	45.35	5.68
1562	1686	0.951040	AGAAAAGTTCTGGCTCCGCG	60.951	55.000	0.00	0.00	38.91	6.46
1943	2108	6.452244	AATTTTGCACGCAGTTAGAAAATC	57.548	33.333	0.00	0.00	41.61	2.17
2023	2335	6.418057	TCCAAAATGCTTCCAACAATAGTT	57.582	33.333	0.00	0.00	38.88	2.24
2496	5841	2.746904	TCGAACATTCATCGCAACCAAT	59.253	40.909	0.00	0.00	40.04	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.