Multiple sequence alignment - TraesCS3B01G489500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G489500 chr3B 100.000 2354 0 0 1 2354 735382697 735380344 0.000000e+00 4348.0
1 TraesCS3B01G489500 chr3B 88.415 656 49 8 842 1489 735200658 735200022 0.000000e+00 765.0
2 TraesCS3B01G489500 chr3B 90.727 399 35 1 1614 2010 734879512 734879114 4.450000e-147 531.0
3 TraesCS3B01G489500 chr3B 82.090 201 16 9 660 849 735209431 735209240 1.130000e-33 154.0
4 TraesCS3B01G489500 chr3B 89.565 115 10 2 2037 2150 734879114 734879001 6.780000e-31 145.0
5 TraesCS3B01G489500 chr3B 75.862 203 43 6 304 503 780871232 780871033 5.350000e-17 99.0
6 TraesCS3B01G489500 chr3B 87.356 87 8 3 2270 2354 734878916 734878831 1.930000e-16 97.1
7 TraesCS3B01G489500 chr3D 87.659 1418 99 34 204 1597 553928127 553926762 0.000000e+00 1580.0
8 TraesCS3B01G489500 chr3D 83.234 167 17 6 1 167 553928289 553928134 2.440000e-30 143.0
9 TraesCS3B01G489500 chr3A 87.953 1353 103 31 204 1538 690461275 690459965 0.000000e+00 1541.0
10 TraesCS3B01G489500 chr3A 89.200 963 61 18 750 1692 690370900 690369961 0.000000e+00 1162.0
11 TraesCS3B01G489500 chr3A 91.262 515 39 4 750 1258 690397852 690397338 0.000000e+00 697.0
12 TraesCS3B01G489500 chr3A 85.961 463 28 20 1244 1692 690391082 690390643 5.930000e-126 460.0
13 TraesCS3B01G489500 chr3A 85.065 462 33 21 1244 1692 690418604 690418166 2.780000e-119 438.0
14 TraesCS3B01G489500 chr3A 90.878 296 23 4 1856 2150 690390451 690390159 6.100000e-106 394.0
15 TraesCS3B01G489500 chr3A 90.203 296 25 4 1856 2150 690417974 690417682 1.320000e-102 383.0
16 TraesCS3B01G489500 chr3A 89.865 296 24 5 1856 2150 690369769 690369479 2.210000e-100 375.0
17 TraesCS3B01G489500 chr3A 95.122 205 10 0 750 954 690425084 690424880 8.110000e-85 324.0
18 TraesCS3B01G489500 chr3A 85.366 205 19 7 660 859 690461907 690461709 3.970000e-48 202.0
19 TraesCS3B01G489500 chr3A 92.523 107 7 1 1718 1823 690418082 690417976 4.050000e-33 152.0
20 TraesCS3B01G489500 chr3A 90.741 108 9 1 1718 1824 690369877 690369770 2.440000e-30 143.0
21 TraesCS3B01G489500 chr3A 90.654 107 9 1 1718 1823 690390559 690390453 8.770000e-30 141.0
22 TraesCS3B01G489500 chr4B 75.100 498 84 19 40 504 552581806 552582296 1.850000e-46 196.0
23 TraesCS3B01G489500 chr4B 97.561 41 1 0 334 374 424722427 424722467 1.170000e-08 71.3
24 TraesCS3B01G489500 chr1B 75.203 492 76 21 82 538 681154960 681155440 8.590000e-45 191.0
25 TraesCS3B01G489500 chr4A 78.889 270 46 6 1 270 532348449 532348707 3.110000e-39 172.0
26 TraesCS3B01G489500 chr7B 79.512 205 31 6 306 503 179960621 179960421 4.080000e-28 135.0
27 TraesCS3B01G489500 chr7B 93.103 87 6 0 2190 2276 283123203 283123289 6.830000e-26 128.0
28 TraesCS3B01G489500 chr1A 94.186 86 5 0 2190 2275 548375624 548375539 5.280000e-27 132.0
29 TraesCS3B01G489500 chr1A 90.323 93 9 0 2190 2282 439847105 439847013 3.180000e-24 122.0
30 TraesCS3B01G489500 chr7A 91.304 92 8 0 2191 2282 467851822 467851913 2.460000e-25 126.0
31 TraesCS3B01G489500 chr2A 92.135 89 7 0 2190 2278 498099442 498099530 2.460000e-25 126.0
32 TraesCS3B01G489500 chr2A 87.255 102 10 3 2178 2278 773109790 773109889 1.910000e-21 113.0
33 TraesCS3B01G489500 chr6B 92.045 88 7 0 2191 2278 431701437 431701350 8.830000e-25 124.0
34 TraesCS3B01G489500 chr2D 92.045 88 5 2 2191 2278 579191500 579191585 3.180000e-24 122.0
35 TraesCS3B01G489500 chr1D 90.217 92 9 0 2191 2282 295840744 295840653 1.140000e-23 121.0
36 TraesCS3B01G489500 chr4D 77.778 189 38 4 15 201 480820891 480820705 1.910000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G489500 chr3B 735380344 735382697 2353 True 4348.000000 4348 100.000000 1 2354 1 chr3B.!!$R3 2353
1 TraesCS3B01G489500 chr3B 735200022 735200658 636 True 765.000000 765 88.415000 842 1489 1 chr3B.!!$R1 647
2 TraesCS3B01G489500 chr3B 734878831 734879512 681 True 257.700000 531 89.216000 1614 2354 3 chr3B.!!$R5 740
3 TraesCS3B01G489500 chr3D 553926762 553928289 1527 True 861.500000 1580 85.446500 1 1597 2 chr3D.!!$R1 1596
4 TraesCS3B01G489500 chr3A 690459965 690461907 1942 True 871.500000 1541 86.659500 204 1538 2 chr3A.!!$R6 1334
5 TraesCS3B01G489500 chr3A 690397338 690397852 514 True 697.000000 697 91.262000 750 1258 1 chr3A.!!$R1 508
6 TraesCS3B01G489500 chr3A 690369479 690370900 1421 True 560.000000 1162 89.935333 750 2150 3 chr3A.!!$R3 1400
7 TraesCS3B01G489500 chr3A 690390159 690391082 923 True 331.666667 460 89.164333 1244 2150 3 chr3A.!!$R4 906
8 TraesCS3B01G489500 chr3A 690417682 690418604 922 True 324.333333 438 89.263667 1244 2150 3 chr3A.!!$R5 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 874 0.103026 CGAGTTCGGATGAGGATGCA 59.897 55.0 0.0 0.0 35.37 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1852 2397 0.399376 ACACCACCAGTCCACCACTA 60.399 55.0 0.0 0.0 32.21 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.394797 AAAGAAGCTCAAATTCCTCCCT 57.605 40.909 0.00 0.00 0.00 4.20
22 23 3.643199 AGAAGCTCAAATTCCTCCCTC 57.357 47.619 0.00 0.00 0.00 4.30
23 24 2.093235 AGAAGCTCAAATTCCTCCCTCG 60.093 50.000 0.00 0.00 0.00 4.63
24 25 1.573108 AGCTCAAATTCCTCCCTCGA 58.427 50.000 0.00 0.00 0.00 4.04
26 27 2.158842 AGCTCAAATTCCTCCCTCGATG 60.159 50.000 0.00 0.00 0.00 3.84
27 28 2.158900 GCTCAAATTCCTCCCTCGATGA 60.159 50.000 0.00 0.00 0.00 2.92
28 29 3.726607 CTCAAATTCCTCCCTCGATGAG 58.273 50.000 5.37 5.37 0.00 2.90
37 38 2.892305 CCTCGATGAGGCGATCAAC 58.108 57.895 0.00 0.00 43.29 3.18
39 40 1.601663 CCTCGATGAGGCGATCAACTC 60.602 57.143 0.00 6.69 43.29 3.01
40 41 1.336440 CTCGATGAGGCGATCAACTCT 59.664 52.381 13.06 1.85 42.53 3.24
42 43 3.149981 TCGATGAGGCGATCAACTCTAT 58.850 45.455 13.06 6.71 42.53 1.98
43 44 3.057946 TCGATGAGGCGATCAACTCTATG 60.058 47.826 13.06 4.94 42.53 2.23
44 45 3.583806 GATGAGGCGATCAACTCTATGG 58.416 50.000 13.06 0.00 42.53 2.74
45 46 2.388735 TGAGGCGATCAACTCTATGGT 58.611 47.619 13.06 0.00 34.02 3.55
47 48 3.126831 GAGGCGATCAACTCTATGGTTG 58.873 50.000 6.44 0.00 45.42 3.77
48 49 2.158900 AGGCGATCAACTCTATGGTTGG 60.159 50.000 7.37 0.00 44.52 3.77
49 50 2.420129 GGCGATCAACTCTATGGTTGGT 60.420 50.000 7.37 0.54 44.52 3.67
50 51 2.609459 GCGATCAACTCTATGGTTGGTG 59.391 50.000 7.37 0.00 44.52 4.17
51 52 3.678806 GCGATCAACTCTATGGTTGGTGA 60.679 47.826 7.37 2.74 44.52 4.02
52 53 4.697514 CGATCAACTCTATGGTTGGTGAT 58.302 43.478 7.37 5.43 44.52 3.06
54 55 4.220693 TCAACTCTATGGTTGGTGATGG 57.779 45.455 7.37 0.00 44.52 3.51
55 56 3.843619 TCAACTCTATGGTTGGTGATGGA 59.156 43.478 7.37 0.00 44.52 3.41
57 58 5.044919 TCAACTCTATGGTTGGTGATGGAAT 60.045 40.000 7.37 0.00 44.52 3.01
58 59 5.456921 ACTCTATGGTTGGTGATGGAATT 57.543 39.130 0.00 0.00 0.00 2.17
59 60 5.195940 ACTCTATGGTTGGTGATGGAATTG 58.804 41.667 0.00 0.00 0.00 2.32
60 61 4.535781 TCTATGGTTGGTGATGGAATTGG 58.464 43.478 0.00 0.00 0.00 3.16
61 62 1.935799 TGGTTGGTGATGGAATTGGG 58.064 50.000 0.00 0.00 0.00 4.12
63 64 2.158249 TGGTTGGTGATGGAATTGGGAA 60.158 45.455 0.00 0.00 0.00 3.97
64 65 2.233676 GGTTGGTGATGGAATTGGGAAC 59.766 50.000 0.00 0.00 0.00 3.62
66 67 4.340617 GTTGGTGATGGAATTGGGAACTA 58.659 43.478 0.00 0.00 0.00 2.24
67 68 4.235079 TGGTGATGGAATTGGGAACTAG 57.765 45.455 0.00 0.00 0.00 2.57
68 69 3.591527 TGGTGATGGAATTGGGAACTAGT 59.408 43.478 0.00 0.00 0.00 2.57
69 70 4.200092 GGTGATGGAATTGGGAACTAGTC 58.800 47.826 0.00 0.00 0.00 2.59
70 71 4.080299 GGTGATGGAATTGGGAACTAGTCT 60.080 45.833 0.00 0.00 30.93 3.24
71 72 5.130477 GGTGATGGAATTGGGAACTAGTCTA 59.870 44.000 0.00 0.00 30.93 2.59
73 74 6.931840 GTGATGGAATTGGGAACTAGTCTATC 59.068 42.308 0.00 0.00 44.01 2.08
74 75 5.888982 TGGAATTGGGAACTAGTCTATCC 57.111 43.478 0.00 0.00 30.93 2.59
75 76 5.285401 TGGAATTGGGAACTAGTCTATCCA 58.715 41.667 13.00 9.45 34.82 3.41
77 78 6.126768 TGGAATTGGGAACTAGTCTATCCAAG 60.127 42.308 13.00 0.00 37.63 3.61
78 79 4.755266 TTGGGAACTAGTCTATCCAAGC 57.245 45.455 13.00 0.00 34.82 4.01
79 80 2.693591 TGGGAACTAGTCTATCCAAGCG 59.306 50.000 13.00 0.00 34.82 4.68
81 82 2.036089 GGAACTAGTCTATCCAAGCGGG 59.964 54.545 7.14 0.00 38.37 6.13
82 83 1.705873 ACTAGTCTATCCAAGCGGGG 58.294 55.000 0.00 0.00 37.22 5.73
83 84 1.217183 ACTAGTCTATCCAAGCGGGGA 59.783 52.381 1.73 1.73 42.21 4.81
85 86 1.051812 AGTCTATCCAAGCGGGGATG 58.948 55.000 18.90 10.85 46.98 3.51
86 87 0.759346 GTCTATCCAAGCGGGGATGT 59.241 55.000 18.90 1.16 46.98 3.06
87 88 1.141053 GTCTATCCAAGCGGGGATGTT 59.859 52.381 18.90 0.52 46.98 2.71
88 89 1.140852 TCTATCCAAGCGGGGATGTTG 59.859 52.381 18.90 10.80 46.98 3.33
89 90 0.916086 TATCCAAGCGGGGATGTTGT 59.084 50.000 18.90 0.00 46.98 3.32
90 91 0.680921 ATCCAAGCGGGGATGTTGTG 60.681 55.000 10.88 0.00 45.90 3.33
91 92 2.342650 CCAAGCGGGGATGTTGTGG 61.343 63.158 0.00 0.00 0.00 4.17
93 94 1.603455 AAGCGGGGATGTTGTGGTG 60.603 57.895 0.00 0.00 0.00 4.17
94 95 3.061848 GCGGGGATGTTGTGGTGG 61.062 66.667 0.00 0.00 0.00 4.61
97 98 3.061848 GGGATGTTGTGGTGGCGG 61.062 66.667 0.00 0.00 0.00 6.13
98 99 3.747976 GGATGTTGTGGTGGCGGC 61.748 66.667 0.00 0.00 0.00 6.53
99 100 4.101790 GATGTTGTGGTGGCGGCG 62.102 66.667 0.51 0.51 0.00 6.46
100 101 4.947147 ATGTTGTGGTGGCGGCGT 62.947 61.111 9.37 0.00 0.00 5.68
103 104 4.634703 TTGTGGTGGCGGCGTCAT 62.635 61.111 20.33 0.00 0.00 3.06
107 108 4.778143 GGTGGCGGCGTCATCCTT 62.778 66.667 20.33 0.00 0.00 3.36
108 109 3.499737 GTGGCGGCGTCATCCTTG 61.500 66.667 20.33 0.00 0.00 3.61
109 110 4.015406 TGGCGGCGTCATCCTTGT 62.015 61.111 11.51 0.00 0.00 3.16
110 111 3.499737 GGCGGCGTCATCCTTGTG 61.500 66.667 6.63 0.00 0.00 3.33
111 112 3.499737 GCGGCGTCATCCTTGTGG 61.500 66.667 9.37 0.00 0.00 4.17
114 115 2.401766 GGCGTCATCCTTGTGGCAG 61.402 63.158 0.00 0.00 0.00 4.85
115 116 1.375908 GCGTCATCCTTGTGGCAGA 60.376 57.895 0.00 0.00 0.00 4.26
116 117 1.639298 GCGTCATCCTTGTGGCAGAC 61.639 60.000 0.00 0.00 35.19 3.51
117 118 0.320683 CGTCATCCTTGTGGCAGACA 60.321 55.000 0.00 0.00 36.97 3.41
118 119 1.676916 CGTCATCCTTGTGGCAGACAT 60.677 52.381 0.00 0.00 36.97 3.06
120 121 1.352017 TCATCCTTGTGGCAGACATGT 59.648 47.619 0.00 0.00 33.40 3.21
122 123 0.473755 TCCTTGTGGCAGACATGTGT 59.526 50.000 1.15 0.00 33.40 3.72
123 124 1.696884 TCCTTGTGGCAGACATGTGTA 59.303 47.619 1.15 0.00 33.40 2.90
124 125 1.806542 CCTTGTGGCAGACATGTGTAC 59.193 52.381 1.15 0.00 33.40 2.90
126 127 2.455674 TGTGGCAGACATGTGTACTC 57.544 50.000 1.15 0.00 0.00 2.59
127 128 1.336795 TGTGGCAGACATGTGTACTCG 60.337 52.381 1.15 0.00 0.00 4.18
129 130 0.460284 GGCAGACATGTGTACTCGGG 60.460 60.000 1.15 0.00 0.00 5.14
131 132 0.532573 CAGACATGTGTACTCGGGCT 59.467 55.000 1.15 0.00 0.00 5.19
132 133 1.066858 CAGACATGTGTACTCGGGCTT 60.067 52.381 1.15 0.00 0.00 4.35
133 134 1.204941 AGACATGTGTACTCGGGCTTC 59.795 52.381 1.15 0.00 0.00 3.86
135 136 1.153628 ATGTGTACTCGGGCTTCGC 60.154 57.895 0.00 0.00 39.05 4.70
136 137 1.605058 ATGTGTACTCGGGCTTCGCT 61.605 55.000 0.00 0.00 39.05 4.93
137 138 1.805945 GTGTACTCGGGCTTCGCTG 60.806 63.158 0.00 0.00 39.05 5.18
139 140 1.080025 GTACTCGGGCTTCGCTGTT 60.080 57.895 0.00 0.00 39.05 3.16
140 141 1.080093 TACTCGGGCTTCGCTGTTG 60.080 57.895 0.00 0.00 39.05 3.33
151 152 3.862124 GCTGTTGCGATGACGTCT 58.138 55.556 17.92 1.84 41.98 4.18
152 153 1.417592 GCTGTTGCGATGACGTCTG 59.582 57.895 17.92 7.84 41.98 3.51
153 154 1.417592 CTGTTGCGATGACGTCTGC 59.582 57.895 17.92 17.54 41.98 4.26
154 155 1.006220 TGTTGCGATGACGTCTGCT 60.006 52.632 17.92 1.02 41.98 4.24
155 156 1.008875 TGTTGCGATGACGTCTGCTC 61.009 55.000 17.92 14.26 41.98 4.26
156 157 1.446099 TTGCGATGACGTCTGCTCC 60.446 57.895 17.92 2.23 41.98 4.70
157 158 2.153547 TTGCGATGACGTCTGCTCCA 62.154 55.000 17.92 4.87 41.98 3.86
158 159 1.875813 GCGATGACGTCTGCTCCAG 60.876 63.158 17.92 2.60 41.98 3.86
161 162 3.997064 ATGACGTCTGCTCCAGCGC 62.997 63.158 17.92 0.00 45.83 5.92
179 180 3.787001 GGACGGGGAGCTTGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
180 181 2.683933 GACGGGGAGCTTGGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
181 182 2.041265 ACGGGGAGCTTGGGAGAT 59.959 61.111 0.00 0.00 0.00 2.75
182 183 0.759436 GACGGGGAGCTTGGGAGATA 60.759 60.000 0.00 0.00 0.00 1.98
184 185 1.059913 CGGGGAGCTTGGGAGATAAT 58.940 55.000 0.00 0.00 0.00 1.28
188 189 3.497584 GGGGAGCTTGGGAGATAATCAAG 60.498 52.174 0.00 0.00 40.38 3.02
191 192 4.504689 GGAGCTTGGGAGATAATCAAGGAG 60.505 50.000 0.00 0.00 38.52 3.69
192 193 3.145286 GCTTGGGAGATAATCAAGGAGC 58.855 50.000 0.00 0.00 38.52 4.70
193 194 3.181446 GCTTGGGAGATAATCAAGGAGCT 60.181 47.826 0.00 0.00 38.52 4.09
194 195 4.387598 CTTGGGAGATAATCAAGGAGCTG 58.612 47.826 0.00 0.00 35.53 4.24
195 196 3.657610 TGGGAGATAATCAAGGAGCTGA 58.342 45.455 0.00 0.00 0.00 4.26
196 197 4.237843 TGGGAGATAATCAAGGAGCTGAT 58.762 43.478 0.00 0.00 37.66 2.90
198 199 4.041444 GGGAGATAATCAAGGAGCTGATGT 59.959 45.833 0.00 0.00 36.16 3.06
201 202 6.210385 GGAGATAATCAAGGAGCTGATGTAGA 59.790 42.308 0.00 0.00 36.16 2.59
202 203 7.093377 GGAGATAATCAAGGAGCTGATGTAGAT 60.093 40.741 0.00 0.00 36.16 1.98
203 204 8.891985 AGATAATCAAGGAGCTGATGTAGATA 57.108 34.615 0.00 0.00 36.16 1.98
204 205 8.970020 AGATAATCAAGGAGCTGATGTAGATAG 58.030 37.037 0.00 0.00 36.16 2.08
205 206 6.992664 AATCAAGGAGCTGATGTAGATAGT 57.007 37.500 0.00 0.00 36.16 2.12
206 207 5.781210 TCAAGGAGCTGATGTAGATAGTG 57.219 43.478 0.00 0.00 0.00 2.74
207 208 4.586421 TCAAGGAGCTGATGTAGATAGTGG 59.414 45.833 0.00 0.00 0.00 4.00
212 642 4.541705 AGCTGATGTAGATAGTGGTCTGT 58.458 43.478 0.00 0.00 0.00 3.41
234 664 9.338622 TCTGTATTAATGACATCTAGAAGACGA 57.661 33.333 1.17 0.00 0.00 4.20
242 672 7.153217 TGACATCTAGAAGACGAATTGTGTA 57.847 36.000 1.17 0.00 0.00 2.90
243 673 7.251281 TGACATCTAGAAGACGAATTGTGTAG 58.749 38.462 1.17 0.00 0.00 2.74
250 680 3.660865 AGACGAATTGTGTAGTGGGTTC 58.339 45.455 0.00 0.00 0.00 3.62
270 700 2.991540 GGTTGGTGGAAGGCAGGC 60.992 66.667 0.00 0.00 0.00 4.85
273 703 0.323360 GTTGGTGGAAGGCAGGCATA 60.323 55.000 0.00 0.00 0.00 3.14
287 717 3.808728 CAGGCATAATTTTCTCCTCCGA 58.191 45.455 0.00 0.00 0.00 4.55
291 721 3.621715 GCATAATTTTCTCCTCCGACGTT 59.378 43.478 0.00 0.00 0.00 3.99
294 724 0.601841 TTTTCTCCTCCGACGTTGGC 60.602 55.000 17.75 0.00 0.00 4.52
341 786 4.110482 CCCTAGTCTAATTCGTTCAACGG 58.890 47.826 10.69 0.00 42.81 4.44
347 792 3.997681 TCTAATTCGTTCAACGGCAATGA 59.002 39.130 10.69 1.13 42.81 2.57
353 798 0.237235 TTCAACGGCAATGACTTCGC 59.763 50.000 0.00 0.00 0.00 4.70
384 829 1.142870 TCACCTTGGAGACCCACAAAG 59.857 52.381 0.00 0.00 43.41 2.77
388 833 0.550914 TTGGAGACCCACAAAGCTGT 59.449 50.000 0.00 0.00 43.41 4.40
389 834 1.429930 TGGAGACCCACAAAGCTGTA 58.570 50.000 0.00 0.00 37.58 2.74
390 835 1.771854 TGGAGACCCACAAAGCTGTAA 59.228 47.619 0.00 0.00 37.58 2.41
417 862 1.248721 GTGAAGCTACGTCGAGTTCG 58.751 55.000 0.00 0.00 41.45 3.95
426 871 0.663688 CGTCGAGTTCGGATGAGGAT 59.336 55.000 1.26 0.00 40.29 3.24
427 872 1.598183 CGTCGAGTTCGGATGAGGATG 60.598 57.143 1.26 0.00 40.29 3.51
428 873 0.385751 TCGAGTTCGGATGAGGATGC 59.614 55.000 1.26 0.00 40.29 3.91
429 874 0.103026 CGAGTTCGGATGAGGATGCA 59.897 55.000 0.00 0.00 35.37 3.96
430 875 1.269988 CGAGTTCGGATGAGGATGCAT 60.270 52.381 0.00 0.00 35.37 3.96
438 883 3.336468 GGATGAGGATGCATGTGATCTC 58.664 50.000 2.46 3.94 0.00 2.75
466 911 0.106268 TCCATTGGTGGTTGCTGTGT 60.106 50.000 1.86 0.00 46.16 3.72
485 930 2.993008 GCAGAGGCAGGTGATGGA 59.007 61.111 0.00 0.00 40.72 3.41
487 932 1.153489 CAGAGGCAGGTGATGGACG 60.153 63.158 0.00 0.00 0.00 4.79
490 935 2.509336 GGCAGGTGATGGACGTCG 60.509 66.667 9.92 0.00 0.00 5.12
491 936 2.571757 GCAGGTGATGGACGTCGA 59.428 61.111 9.92 5.99 0.00 4.20
508 953 0.460987 CGATGTCAAGCTCAGGGGAC 60.461 60.000 0.00 0.00 0.00 4.46
510 955 0.908198 ATGTCAAGCTCAGGGGACTC 59.092 55.000 0.00 0.00 40.21 3.36
513 958 1.066502 GTCAAGCTCAGGGGACTCTTC 60.067 57.143 0.00 0.00 40.21 2.87
514 959 0.251634 CAAGCTCAGGGGACTCTTCC 59.748 60.000 0.00 0.00 40.21 3.46
515 960 0.178891 AAGCTCAGGGGACTCTTCCA 60.179 55.000 0.00 0.00 44.98 3.53
525 970 2.484889 GGACTCTTCCACAGTGTTGAC 58.515 52.381 0.00 0.00 42.30 3.18
543 988 7.339466 AGTGTTGACTGTAATTTTCTTTCCTGT 59.661 33.333 0.00 0.00 0.00 4.00
561 1006 9.525409 CTTTCCTGTGATTGATGAATAAATTCC 57.475 33.333 0.41 0.00 35.97 3.01
563 1008 8.592529 TCCTGTGATTGATGAATAAATTCCAA 57.407 30.769 0.41 0.00 35.97 3.53
564 1009 9.033711 TCCTGTGATTGATGAATAAATTCCAAA 57.966 29.630 0.41 0.00 35.97 3.28
565 1010 9.656040 CCTGTGATTGATGAATAAATTCCAAAA 57.344 29.630 0.41 0.00 35.97 2.44
601 1046 5.238650 GCACCAGCTTCAAGTTTAAGACTTA 59.761 40.000 0.85 0.00 41.33 2.24
605 1050 8.352942 ACCAGCTTCAAGTTTAAGACTTAAATG 58.647 33.333 20.42 15.99 46.75 2.32
606 1051 8.567948 CCAGCTTCAAGTTTAAGACTTAAATGA 58.432 33.333 20.42 17.64 46.75 2.57
607 1052 9.387123 CAGCTTCAAGTTTAAGACTTAAATGAC 57.613 33.333 20.42 10.84 46.75 3.06
608 1053 8.568794 AGCTTCAAGTTTAAGACTTAAATGACC 58.431 33.333 20.42 14.19 46.75 4.02
609 1054 7.808381 GCTTCAAGTTTAAGACTTAAATGACCC 59.192 37.037 20.42 9.56 46.75 4.46
613 1058 6.849151 AGTTTAAGACTTAAATGACCCTGGT 58.151 36.000 20.42 0.00 37.44 4.00
614 1059 7.981142 AGTTTAAGACTTAAATGACCCTGGTA 58.019 34.615 20.42 0.00 37.44 3.25
615 1060 8.101419 AGTTTAAGACTTAAATGACCCTGGTAG 58.899 37.037 20.42 0.00 37.44 3.18
616 1061 5.437191 AAGACTTAAATGACCCTGGTAGG 57.563 43.478 0.00 0.00 34.30 3.18
617 1062 3.200165 AGACTTAAATGACCCTGGTAGGC 59.800 47.826 0.00 0.00 32.73 3.93
619 1064 3.527665 ACTTAAATGACCCTGGTAGGCAT 59.472 43.478 0.00 0.00 32.73 4.40
628 1073 2.567615 CCCTGGTAGGCATAGATACCAC 59.432 54.545 0.00 0.00 45.05 4.16
642 1087 5.831702 AGATACCACTGTACTTCTAACCG 57.168 43.478 0.00 0.00 0.00 4.44
663 1108 1.471119 TCTACCGGTTCGCTTCTCAT 58.529 50.000 15.04 0.00 0.00 2.90
667 1112 1.066143 ACCGGTTCGCTTCTCATCATT 60.066 47.619 0.00 0.00 0.00 2.57
701 1146 8.219178 GGTAGATCTTATCCCTATCCGATAGAA 58.781 40.741 15.85 5.22 34.77 2.10
1402 1876 1.669779 GATGAAGCAAGCACAGCTAGG 59.330 52.381 0.00 0.00 42.53 3.02
1410 1884 4.673403 CACAGCTAGGTCGTGCAA 57.327 55.556 10.22 0.00 0.00 4.08
1486 1960 0.825410 TCCACCTTGTGTACGTGTGT 59.175 50.000 0.00 0.00 0.00 3.72
1489 1963 2.481622 CCACCTTGTGTACGTGTGTGTA 60.482 50.000 0.00 0.00 0.00 2.90
1490 1964 3.386486 CACCTTGTGTACGTGTGTGTAT 58.614 45.455 0.00 0.00 0.00 2.29
1491 1965 3.183574 CACCTTGTGTACGTGTGTGTATG 59.816 47.826 0.00 0.00 0.00 2.39
1492 1966 3.181473 ACCTTGTGTACGTGTGTGTATGT 60.181 43.478 0.00 0.00 0.00 2.29
1493 1967 3.183574 CCTTGTGTACGTGTGTGTATGTG 59.816 47.826 0.00 0.00 0.00 3.21
1494 1968 3.439895 TGTGTACGTGTGTGTATGTGT 57.560 42.857 0.00 0.00 0.00 3.72
1495 1969 3.117046 TGTGTACGTGTGTGTATGTGTG 58.883 45.455 0.00 0.00 0.00 3.82
1496 1970 3.117794 GTGTACGTGTGTGTATGTGTGT 58.882 45.455 0.00 0.00 0.00 3.72
1497 1971 3.060807 GTGTACGTGTGTGTATGTGTGTG 60.061 47.826 0.00 0.00 0.00 3.82
1504 1978 4.739228 GTGTGTGTATGTGTGTGTACGTAA 59.261 41.667 0.00 0.00 0.00 3.18
1589 2063 3.663644 TGCTTGTGCATTGTGGTTG 57.336 47.368 0.00 0.00 45.31 3.77
1790 2335 2.303707 GCTGATAGCGAGACGTCTAC 57.696 55.000 20.09 14.00 0.00 2.59
1824 2369 2.450609 TCTTAAAGCACCACGACTCC 57.549 50.000 0.00 0.00 0.00 3.85
1825 2370 1.068474 CTTAAAGCACCACGACTCCG 58.932 55.000 0.00 0.00 42.50 4.63
1826 2371 0.320073 TTAAAGCACCACGACTCCGG 60.320 55.000 0.00 0.00 40.78 5.14
1827 2372 1.466025 TAAAGCACCACGACTCCGGT 61.466 55.000 0.00 0.00 40.78 5.28
1828 2373 2.319890 AAAGCACCACGACTCCGGTT 62.320 55.000 0.00 0.00 40.78 4.44
1829 2374 1.466025 AAGCACCACGACTCCGGTTA 61.466 55.000 0.00 0.00 40.78 2.85
1830 2375 1.005867 GCACCACGACTCCGGTTAA 60.006 57.895 0.00 0.00 40.78 2.01
1831 2376 0.390735 GCACCACGACTCCGGTTAAT 60.391 55.000 0.00 0.00 40.78 1.40
1832 2377 1.355971 CACCACGACTCCGGTTAATG 58.644 55.000 0.00 0.00 40.78 1.90
1833 2378 0.971386 ACCACGACTCCGGTTAATGT 59.029 50.000 0.00 0.00 40.78 2.71
1834 2379 1.345415 ACCACGACTCCGGTTAATGTT 59.655 47.619 0.00 0.00 40.78 2.71
1835 2380 1.730064 CCACGACTCCGGTTAATGTTG 59.270 52.381 0.00 0.99 40.78 3.33
1836 2381 2.409975 CACGACTCCGGTTAATGTTGT 58.590 47.619 0.00 1.62 40.78 3.32
1837 2382 2.156891 CACGACTCCGGTTAATGTTGTG 59.843 50.000 0.00 10.17 40.78 3.33
1838 2383 2.224113 ACGACTCCGGTTAATGTTGTGT 60.224 45.455 0.00 0.00 40.78 3.72
1839 2384 2.156891 CGACTCCGGTTAATGTTGTGTG 59.843 50.000 0.00 0.00 0.00 3.82
1840 2385 3.395639 GACTCCGGTTAATGTTGTGTGA 58.604 45.455 0.00 0.00 0.00 3.58
1841 2386 3.399330 ACTCCGGTTAATGTTGTGTGAG 58.601 45.455 0.00 0.00 0.00 3.51
1842 2387 3.181458 ACTCCGGTTAATGTTGTGTGAGT 60.181 43.478 0.00 0.00 0.00 3.41
1843 2388 4.039488 ACTCCGGTTAATGTTGTGTGAGTA 59.961 41.667 0.00 0.00 0.00 2.59
1844 2389 5.155278 TCCGGTTAATGTTGTGTGAGTAT 57.845 39.130 0.00 0.00 0.00 2.12
1845 2390 4.932799 TCCGGTTAATGTTGTGTGAGTATG 59.067 41.667 0.00 0.00 0.00 2.39
1846 2391 4.693566 CCGGTTAATGTTGTGTGAGTATGT 59.306 41.667 0.00 0.00 0.00 2.29
1847 2392 5.390461 CCGGTTAATGTTGTGTGAGTATGTG 60.390 44.000 0.00 0.00 0.00 3.21
1848 2393 5.390613 GGTTAATGTTGTGTGAGTATGTGC 58.609 41.667 0.00 0.00 0.00 4.57
1849 2394 5.390613 GTTAATGTTGTGTGAGTATGTGCC 58.609 41.667 0.00 0.00 0.00 5.01
1850 2395 2.629336 TGTTGTGTGAGTATGTGCCA 57.371 45.000 0.00 0.00 0.00 4.92
1851 2396 3.138884 TGTTGTGTGAGTATGTGCCAT 57.861 42.857 0.00 0.00 0.00 4.40
1852 2397 3.485394 TGTTGTGTGAGTATGTGCCATT 58.515 40.909 0.00 0.00 0.00 3.16
1853 2398 4.646572 TGTTGTGTGAGTATGTGCCATTA 58.353 39.130 0.00 0.00 0.00 1.90
1854 2399 4.694982 TGTTGTGTGAGTATGTGCCATTAG 59.305 41.667 0.00 0.00 0.00 1.73
1875 2451 0.981183 GGTGGACTGGTGGTGTATCA 59.019 55.000 0.00 0.00 0.00 2.15
1960 2536 8.019669 GCAGCTTCTGACCAAATTACATATATG 58.980 37.037 11.29 11.29 32.44 1.78
2011 2587 7.488187 TGCAAAATTGAATTTCGGATGAAAA 57.512 28.000 3.32 0.00 46.53 2.29
2046 2622 3.012502 TGACATGGTCCTAGGTTCCTAGT 59.987 47.826 20.29 18.11 35.50 2.57
2069 2645 2.458951 TGTGCGTCAAAAGAATTGTGC 58.541 42.857 0.00 0.00 0.00 4.57
2116 2692 1.302832 CCCAAACGCAAGCTCTCCT 60.303 57.895 0.00 0.00 45.62 3.69
2117 2693 1.580845 CCCAAACGCAAGCTCTCCTG 61.581 60.000 0.00 0.00 45.62 3.86
2147 2772 8.989980 GGAGTGATTTTGTTAGTACATATAGGC 58.010 37.037 0.00 0.00 33.44 3.93
2157 2782 9.976511 TGTTAGTACATATAGGCACTTGTTATC 57.023 33.333 0.00 0.00 41.75 1.75
2169 2794 5.393962 GCACTTGTTATCAACTGGAATGTC 58.606 41.667 0.00 0.00 0.00 3.06
2174 2799 6.627395 TGTTATCAACTGGAATGTCGTTTT 57.373 33.333 0.00 0.00 0.00 2.43
2184 2809 6.189677 TGGAATGTCGTTTTCCATTGATAC 57.810 37.500 10.87 0.00 45.91 2.24
2186 2811 6.128035 TGGAATGTCGTTTTCCATTGATACAG 60.128 38.462 10.87 0.00 45.91 2.74
2187 2812 5.818136 ATGTCGTTTTCCATTGATACAGG 57.182 39.130 0.00 0.00 0.00 4.00
2188 2813 4.900684 TGTCGTTTTCCATTGATACAGGA 58.099 39.130 0.00 0.00 0.00 3.86
2189 2814 5.309638 TGTCGTTTTCCATTGATACAGGAA 58.690 37.500 0.00 0.00 39.53 3.36
2190 2815 5.943416 TGTCGTTTTCCATTGATACAGGAAT 59.057 36.000 0.00 0.00 40.80 3.01
2191 2816 7.106890 TGTCGTTTTCCATTGATACAGGAATA 58.893 34.615 0.00 0.00 40.80 1.75
2192 2817 7.065324 TGTCGTTTTCCATTGATACAGGAATAC 59.935 37.037 0.00 0.00 40.80 1.89
2193 2818 7.280205 GTCGTTTTCCATTGATACAGGAATACT 59.720 37.037 0.00 0.00 40.80 2.12
2194 2819 7.494625 TCGTTTTCCATTGATACAGGAATACTC 59.505 37.037 0.00 0.00 40.80 2.59
2195 2820 7.254795 CGTTTTCCATTGATACAGGAATACTCC 60.255 40.741 0.00 0.00 40.80 3.85
2196 2821 5.825593 TCCATTGATACAGGAATACTCCC 57.174 43.478 0.00 0.00 43.64 4.30
2197 2822 5.476983 TCCATTGATACAGGAATACTCCCT 58.523 41.667 0.00 0.00 43.64 4.20
2202 2827 3.669354 CAGGAATACTCCCTGCGTC 57.331 57.895 0.00 0.00 43.93 5.19
2203 2828 0.105039 CAGGAATACTCCCTGCGTCC 59.895 60.000 0.00 0.00 43.93 4.79
2204 2829 1.049289 AGGAATACTCCCTGCGTCCC 61.049 60.000 0.00 0.00 43.64 4.46
2205 2830 1.335132 GGAATACTCCCTGCGTCCCA 61.335 60.000 0.00 0.00 35.42 4.37
2206 2831 0.759346 GAATACTCCCTGCGTCCCAT 59.241 55.000 0.00 0.00 0.00 4.00
2207 2832 1.968493 GAATACTCCCTGCGTCCCATA 59.032 52.381 0.00 0.00 0.00 2.74
2208 2833 2.097110 ATACTCCCTGCGTCCCATAA 57.903 50.000 0.00 0.00 0.00 1.90
2209 2834 2.097110 TACTCCCTGCGTCCCATAAT 57.903 50.000 0.00 0.00 0.00 1.28
2210 2835 2.097110 ACTCCCTGCGTCCCATAATA 57.903 50.000 0.00 0.00 0.00 0.98
2211 2836 2.621070 ACTCCCTGCGTCCCATAATAT 58.379 47.619 0.00 0.00 0.00 1.28
2212 2837 3.786553 ACTCCCTGCGTCCCATAATATA 58.213 45.455 0.00 0.00 0.00 0.86
2213 2838 4.164981 ACTCCCTGCGTCCCATAATATAA 58.835 43.478 0.00 0.00 0.00 0.98
2214 2839 4.223032 ACTCCCTGCGTCCCATAATATAAG 59.777 45.833 0.00 0.00 0.00 1.73
2215 2840 4.422057 TCCCTGCGTCCCATAATATAAGA 58.578 43.478 0.00 0.00 0.00 2.10
2216 2841 4.466370 TCCCTGCGTCCCATAATATAAGAG 59.534 45.833 0.00 0.00 0.00 2.85
2217 2842 4.184629 CCTGCGTCCCATAATATAAGAGC 58.815 47.826 0.00 0.00 0.00 4.09
2218 2843 3.845178 TGCGTCCCATAATATAAGAGCG 58.155 45.455 0.00 0.00 0.00 5.03
2219 2844 3.257375 TGCGTCCCATAATATAAGAGCGT 59.743 43.478 0.00 0.00 0.00 5.07
2220 2845 4.243270 GCGTCCCATAATATAAGAGCGTT 58.757 43.478 0.00 0.00 0.00 4.84
2221 2846 4.689345 GCGTCCCATAATATAAGAGCGTTT 59.311 41.667 0.00 0.00 0.00 3.60
2222 2847 5.865552 GCGTCCCATAATATAAGAGCGTTTA 59.134 40.000 0.00 0.00 0.00 2.01
2223 2848 6.534079 GCGTCCCATAATATAAGAGCGTTTAT 59.466 38.462 2.15 2.15 0.00 1.40
2224 2849 7.464178 GCGTCCCATAATATAAGAGCGTTTATG 60.464 40.741 6.15 0.00 32.57 1.90
2225 2850 7.758076 CGTCCCATAATATAAGAGCGTTTATGA 59.242 37.037 0.00 0.00 33.93 2.15
2226 2851 8.870879 GTCCCATAATATAAGAGCGTTTATGAC 58.129 37.037 0.00 0.00 33.93 3.06
2227 2852 8.590204 TCCCATAATATAAGAGCGTTTATGACA 58.410 33.333 0.00 0.00 33.93 3.58
2228 2853 8.656849 CCCATAATATAAGAGCGTTTATGACAC 58.343 37.037 0.00 0.00 33.93 3.67
2229 2854 9.424319 CCATAATATAAGAGCGTTTATGACACT 57.576 33.333 0.00 0.00 33.93 3.55
2233 2858 8.798748 ATATAAGAGCGTTTATGACACTACAC 57.201 34.615 6.15 0.00 0.00 2.90
2234 2859 4.785511 AGAGCGTTTATGACACTACACT 57.214 40.909 0.00 0.00 0.00 3.55
2235 2860 5.892160 AGAGCGTTTATGACACTACACTA 57.108 39.130 0.00 0.00 0.00 2.74
2236 2861 5.881447 AGAGCGTTTATGACACTACACTAG 58.119 41.667 0.00 0.00 0.00 2.57
2237 2862 5.415077 AGAGCGTTTATGACACTACACTAGT 59.585 40.000 0.00 0.00 40.28 2.57
2265 2890 8.433421 AAAAGACACACTTATATTATGGGACG 57.567 34.615 0.00 0.00 37.93 4.79
2266 2891 6.097915 AGACACACTTATATTATGGGACGG 57.902 41.667 0.00 0.00 0.00 4.79
2267 2892 5.836898 AGACACACTTATATTATGGGACGGA 59.163 40.000 0.00 0.00 0.00 4.69
2268 2893 6.015350 AGACACACTTATATTATGGGACGGAG 60.015 42.308 0.00 0.00 0.00 4.63
2272 2897 5.024118 ACTTATATTATGGGACGGAGGGAG 58.976 45.833 0.00 0.00 0.00 4.30
2291 2916 7.016268 GGAGGGAGTAATACATATTGGTGAGAA 59.984 40.741 0.00 0.00 0.00 2.87
2292 2917 7.967908 AGGGAGTAATACATATTGGTGAGAAG 58.032 38.462 0.00 0.00 0.00 2.85
2293 2918 6.651225 GGGAGTAATACATATTGGTGAGAAGC 59.349 42.308 0.00 0.00 0.00 3.86
2295 2920 7.171678 GGAGTAATACATATTGGTGAGAAGCAC 59.828 40.741 0.00 0.00 46.98 4.40
2307 2932 4.781071 GTGAGAAGCACAAAGACATCAAG 58.219 43.478 0.00 0.00 46.91 3.02
2312 2937 6.291377 AGAAGCACAAAGACATCAAGACTAA 58.709 36.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.573108 TCGAGGGAGGAATTTGAGCT 58.427 50.000 0.00 0.00 0.00 4.09
6 7 2.158900 TCATCGAGGGAGGAATTTGAGC 60.159 50.000 0.00 0.00 28.47 4.26
7 8 3.726607 CTCATCGAGGGAGGAATTTGAG 58.273 50.000 8.60 0.74 31.74 3.02
20 21 1.336440 AGAGTTGATCGCCTCATCGAG 59.664 52.381 12.42 0.00 42.14 4.04
21 22 1.393603 AGAGTTGATCGCCTCATCGA 58.606 50.000 12.42 0.00 43.09 3.59
22 23 3.240884 CATAGAGTTGATCGCCTCATCG 58.759 50.000 12.42 0.00 32.72 3.84
23 24 3.006323 ACCATAGAGTTGATCGCCTCATC 59.994 47.826 12.42 0.00 32.72 2.92
24 25 2.968574 ACCATAGAGTTGATCGCCTCAT 59.031 45.455 12.42 3.61 32.72 2.90
26 27 3.460857 AACCATAGAGTTGATCGCCTC 57.539 47.619 3.81 3.81 0.00 4.70
35 36 4.927267 TTCCATCACCAACCATAGAGTT 57.073 40.909 0.00 0.00 0.00 3.01
36 37 5.195940 CAATTCCATCACCAACCATAGAGT 58.804 41.667 0.00 0.00 0.00 3.24
37 38 4.581824 CCAATTCCATCACCAACCATAGAG 59.418 45.833 0.00 0.00 0.00 2.43
39 40 3.638160 CCCAATTCCATCACCAACCATAG 59.362 47.826 0.00 0.00 0.00 2.23
40 41 3.270696 TCCCAATTCCATCACCAACCATA 59.729 43.478 0.00 0.00 0.00 2.74
42 43 1.430853 TCCCAATTCCATCACCAACCA 59.569 47.619 0.00 0.00 0.00 3.67
43 44 2.230130 TCCCAATTCCATCACCAACC 57.770 50.000 0.00 0.00 0.00 3.77
44 45 3.165071 AGTTCCCAATTCCATCACCAAC 58.835 45.455 0.00 0.00 0.00 3.77
45 46 3.541242 AGTTCCCAATTCCATCACCAA 57.459 42.857 0.00 0.00 0.00 3.67
47 48 4.080299 AGACTAGTTCCCAATTCCATCACC 60.080 45.833 0.00 0.00 0.00 4.02
48 49 5.104259 AGACTAGTTCCCAATTCCATCAC 57.896 43.478 0.00 0.00 0.00 3.06
49 50 6.043243 GGATAGACTAGTTCCCAATTCCATCA 59.957 42.308 0.00 0.00 0.00 3.07
50 51 6.043243 TGGATAGACTAGTTCCCAATTCCATC 59.957 42.308 9.19 0.00 0.00 3.51
51 52 5.911178 TGGATAGACTAGTTCCCAATTCCAT 59.089 40.000 9.19 0.00 0.00 3.41
52 53 5.285401 TGGATAGACTAGTTCCCAATTCCA 58.715 41.667 9.19 6.97 0.00 3.53
54 55 5.760743 GCTTGGATAGACTAGTTCCCAATTC 59.239 44.000 15.02 9.46 33.77 2.17
55 56 5.685075 CGCTTGGATAGACTAGTTCCCAATT 60.685 44.000 15.02 0.00 33.77 2.32
57 58 3.132289 CGCTTGGATAGACTAGTTCCCAA 59.868 47.826 9.19 12.17 33.26 4.12
58 59 2.693591 CGCTTGGATAGACTAGTTCCCA 59.306 50.000 9.19 6.12 0.00 4.37
59 60 2.036089 CCGCTTGGATAGACTAGTTCCC 59.964 54.545 9.19 3.86 33.02 3.97
60 61 2.036089 CCCGCTTGGATAGACTAGTTCC 59.964 54.545 5.28 5.28 35.39 3.62
61 62 2.036089 CCCCGCTTGGATAGACTAGTTC 59.964 54.545 0.00 0.00 35.39 3.01
63 64 1.217183 TCCCCGCTTGGATAGACTAGT 59.783 52.381 0.00 0.00 35.39 2.57
64 65 1.996798 TCCCCGCTTGGATAGACTAG 58.003 55.000 0.00 0.00 35.39 2.57
66 67 1.051812 CATCCCCGCTTGGATAGACT 58.948 55.000 3.79 0.00 43.39 3.24
67 68 0.759346 ACATCCCCGCTTGGATAGAC 59.241 55.000 3.79 0.00 43.39 2.59
68 69 1.140852 CAACATCCCCGCTTGGATAGA 59.859 52.381 3.79 0.00 43.39 1.98
69 70 1.134098 ACAACATCCCCGCTTGGATAG 60.134 52.381 3.79 2.65 43.39 2.08
70 71 0.916086 ACAACATCCCCGCTTGGATA 59.084 50.000 3.79 0.00 43.39 2.59
71 72 0.680921 CACAACATCCCCGCTTGGAT 60.681 55.000 0.00 0.00 46.22 3.41
73 74 2.342650 CCACAACATCCCCGCTTGG 61.343 63.158 0.00 0.00 0.00 3.61
74 75 1.603455 ACCACAACATCCCCGCTTG 60.603 57.895 0.00 0.00 0.00 4.01
75 76 1.603455 CACCACAACATCCCCGCTT 60.603 57.895 0.00 0.00 0.00 4.68
77 78 3.061848 CCACCACAACATCCCCGC 61.062 66.667 0.00 0.00 0.00 6.13
78 79 3.061848 GCCACCACAACATCCCCG 61.062 66.667 0.00 0.00 0.00 5.73
79 80 3.061848 CGCCACCACAACATCCCC 61.062 66.667 0.00 0.00 0.00 4.81
81 82 3.747976 GCCGCCACCACAACATCC 61.748 66.667 0.00 0.00 0.00 3.51
82 83 4.101790 CGCCGCCACCACAACATC 62.102 66.667 0.00 0.00 0.00 3.06
83 84 4.947147 ACGCCGCCACCACAACAT 62.947 61.111 0.00 0.00 0.00 2.71
86 87 4.634703 ATGACGCCGCCACCACAA 62.635 61.111 0.00 0.00 0.00 3.33
90 91 4.778143 AAGGATGACGCCGCCACC 62.778 66.667 0.00 0.00 0.00 4.61
91 92 3.499737 CAAGGATGACGCCGCCAC 61.500 66.667 0.00 0.00 0.00 5.01
93 94 3.499737 CACAAGGATGACGCCGCC 61.500 66.667 0.00 0.00 0.00 6.13
94 95 3.499737 CCACAAGGATGACGCCGC 61.500 66.667 0.00 0.00 36.89 6.53
97 98 1.375908 TCTGCCACAAGGATGACGC 60.376 57.895 0.00 0.00 36.89 5.19
98 99 0.320683 TGTCTGCCACAAGGATGACG 60.321 55.000 0.00 0.00 39.75 4.35
99 100 1.741706 CATGTCTGCCACAAGGATGAC 59.258 52.381 0.00 0.00 38.97 3.06
100 101 1.352017 ACATGTCTGCCACAAGGATGA 59.648 47.619 0.00 0.00 38.97 2.92
101 102 1.471287 CACATGTCTGCCACAAGGATG 59.529 52.381 0.00 0.00 38.97 3.51
103 104 0.473755 ACACATGTCTGCCACAAGGA 59.526 50.000 0.00 0.00 38.97 3.36
104 105 1.806542 GTACACATGTCTGCCACAAGG 59.193 52.381 0.00 0.00 38.97 3.61
105 106 2.738846 GAGTACACATGTCTGCCACAAG 59.261 50.000 0.00 0.00 38.97 3.16
106 107 2.766313 GAGTACACATGTCTGCCACAA 58.234 47.619 0.00 0.00 38.97 3.33
107 108 1.336795 CGAGTACACATGTCTGCCACA 60.337 52.381 0.00 0.00 40.18 4.17
108 109 1.350193 CGAGTACACATGTCTGCCAC 58.650 55.000 0.00 0.00 0.00 5.01
109 110 0.246360 CCGAGTACACATGTCTGCCA 59.754 55.000 0.00 0.00 0.00 4.92
110 111 0.460284 CCCGAGTACACATGTCTGCC 60.460 60.000 0.00 0.00 0.00 4.85
111 112 1.084370 GCCCGAGTACACATGTCTGC 61.084 60.000 0.00 0.00 0.00 4.26
114 115 1.641577 GAAGCCCGAGTACACATGTC 58.358 55.000 0.00 0.00 0.00 3.06
115 116 0.108804 CGAAGCCCGAGTACACATGT 60.109 55.000 0.00 0.00 41.76 3.21
116 117 2.665777 CGAAGCCCGAGTACACATG 58.334 57.895 0.00 0.00 41.76 3.21
135 136 1.010935 AGCAGACGTCATCGCAACAG 61.011 55.000 19.50 0.00 41.18 3.16
136 137 1.006220 AGCAGACGTCATCGCAACA 60.006 52.632 19.50 0.00 41.18 3.33
137 138 1.687494 GGAGCAGACGTCATCGCAAC 61.687 60.000 19.50 13.85 41.18 4.17
139 140 2.181777 GGAGCAGACGTCATCGCA 59.818 61.111 19.50 0.00 41.18 5.10
140 141 1.875813 CTGGAGCAGACGTCATCGC 60.876 63.158 19.50 16.66 41.18 4.58
143 144 2.182791 CGCTGGAGCAGACGTCAT 59.817 61.111 19.50 2.61 42.21 3.06
144 145 4.724602 GCGCTGGAGCAGACGTCA 62.725 66.667 19.50 0.00 42.21 4.35
162 163 3.787001 CTCCCAAGCTCCCCGTCC 61.787 72.222 0.00 0.00 0.00 4.79
163 164 0.759436 TATCTCCCAAGCTCCCCGTC 60.759 60.000 0.00 0.00 0.00 4.79
164 165 0.326238 TTATCTCCCAAGCTCCCCGT 60.326 55.000 0.00 0.00 0.00 5.28
165 166 1.002544 GATTATCTCCCAAGCTCCCCG 59.997 57.143 0.00 0.00 0.00 5.73
166 167 2.057922 TGATTATCTCCCAAGCTCCCC 58.942 52.381 0.00 0.00 0.00 4.81
168 169 3.392616 TCCTTGATTATCTCCCAAGCTCC 59.607 47.826 0.00 0.00 36.78 4.70
169 170 4.640364 CTCCTTGATTATCTCCCAAGCTC 58.360 47.826 0.00 0.00 36.78 4.09
170 171 3.181446 GCTCCTTGATTATCTCCCAAGCT 60.181 47.826 0.00 0.00 36.78 3.74
171 172 3.145286 GCTCCTTGATTATCTCCCAAGC 58.855 50.000 0.00 0.00 36.78 4.01
172 173 4.102210 TCAGCTCCTTGATTATCTCCCAAG 59.898 45.833 0.00 0.00 37.58 3.61
173 174 4.040047 TCAGCTCCTTGATTATCTCCCAA 58.960 43.478 0.00 0.00 0.00 4.12
174 175 3.657610 TCAGCTCCTTGATTATCTCCCA 58.342 45.455 0.00 0.00 0.00 4.37
175 176 4.041444 ACATCAGCTCCTTGATTATCTCCC 59.959 45.833 0.00 0.00 35.67 4.30
176 177 5.226194 ACATCAGCTCCTTGATTATCTCC 57.774 43.478 0.00 0.00 35.67 3.71
178 179 7.795534 ATCTACATCAGCTCCTTGATTATCT 57.204 36.000 0.00 0.00 35.67 1.98
179 180 8.748412 ACTATCTACATCAGCTCCTTGATTATC 58.252 37.037 0.00 0.00 35.67 1.75
180 181 8.530311 CACTATCTACATCAGCTCCTTGATTAT 58.470 37.037 0.00 0.00 35.67 1.28
181 182 7.039434 CCACTATCTACATCAGCTCCTTGATTA 60.039 40.741 0.00 0.00 35.67 1.75
182 183 6.239543 CCACTATCTACATCAGCTCCTTGATT 60.240 42.308 0.00 0.00 35.67 2.57
184 185 4.586421 CCACTATCTACATCAGCTCCTTGA 59.414 45.833 0.00 0.00 0.00 3.02
188 189 4.022416 CAGACCACTATCTACATCAGCTCC 60.022 50.000 0.00 0.00 0.00 4.70
191 192 4.927978 ACAGACCACTATCTACATCAGC 57.072 45.455 0.00 0.00 0.00 4.26
196 197 9.416284 TGTCATTAATACAGACCACTATCTACA 57.584 33.333 2.86 0.00 0.00 2.74
202 203 9.862149 TCTAGATGTCATTAATACAGACCACTA 57.138 33.333 0.00 5.39 0.00 2.74
203 204 8.768501 TCTAGATGTCATTAATACAGACCACT 57.231 34.615 0.00 4.73 0.00 4.00
204 205 9.469807 CTTCTAGATGTCATTAATACAGACCAC 57.530 37.037 0.00 0.00 0.00 4.16
205 206 9.421399 TCTTCTAGATGTCATTAATACAGACCA 57.579 33.333 5.60 0.00 0.00 4.02
206 207 9.685828 GTCTTCTAGATGTCATTAATACAGACC 57.314 37.037 5.60 0.00 0.00 3.85
207 208 9.388346 CGTCTTCTAGATGTCATTAATACAGAC 57.612 37.037 5.60 4.38 0.00 3.51
218 648 6.025749 ACACAATTCGTCTTCTAGATGTCA 57.974 37.500 5.60 0.00 33.10 3.58
234 664 2.158726 ACCACGAACCCACTACACAATT 60.159 45.455 0.00 0.00 0.00 2.32
242 672 1.153046 CACCAACCACGAACCCACT 60.153 57.895 0.00 0.00 0.00 4.00
243 673 2.190841 CCACCAACCACGAACCCAC 61.191 63.158 0.00 0.00 0.00 4.61
250 680 2.203280 TGCCTTCCACCAACCACG 60.203 61.111 0.00 0.00 0.00 4.94
270 700 4.034048 CCAACGTCGGAGGAGAAAATTATG 59.966 45.833 4.48 0.00 0.00 1.90
273 703 2.423577 CCAACGTCGGAGGAGAAAATT 58.576 47.619 4.48 0.00 0.00 1.82
322 767 4.177165 TGCCGTTGAACGAATTAGACTA 57.823 40.909 20.47 0.00 46.05 2.59
323 768 3.034721 TGCCGTTGAACGAATTAGACT 57.965 42.857 20.47 0.00 46.05 3.24
332 777 1.721489 CGAAGTCATTGCCGTTGAACG 60.721 52.381 11.30 11.30 42.11 3.95
341 786 0.598065 ACCAAAGGCGAAGTCATTGC 59.402 50.000 0.00 0.00 0.00 3.56
347 792 0.468226 TGACTCACCAAAGGCGAAGT 59.532 50.000 0.00 0.00 0.00 3.01
388 833 2.094390 ACGTAGCTTCACCGCTGATTTA 60.094 45.455 0.00 0.00 41.12 1.40
389 834 1.337823 ACGTAGCTTCACCGCTGATTT 60.338 47.619 0.00 0.00 41.12 2.17
390 835 0.246635 ACGTAGCTTCACCGCTGATT 59.753 50.000 0.00 0.00 41.12 2.57
396 841 0.109873 AACTCGACGTAGCTTCACCG 60.110 55.000 0.00 0.00 0.00 4.94
406 851 0.675837 TCCTCATCCGAACTCGACGT 60.676 55.000 0.00 0.00 43.02 4.34
411 856 2.141517 CATGCATCCTCATCCGAACTC 58.858 52.381 0.00 0.00 0.00 3.01
417 862 3.008157 AGAGATCACATGCATCCTCATCC 59.992 47.826 0.00 0.00 0.00 3.51
449 894 1.855513 CAACACAGCAACCACCAATG 58.144 50.000 0.00 0.00 0.00 2.82
450 895 0.104671 GCAACACAGCAACCACCAAT 59.895 50.000 0.00 0.00 0.00 3.16
451 896 1.253593 TGCAACACAGCAACCACCAA 61.254 50.000 0.00 0.00 42.46 3.67
456 901 1.656441 CCTCTGCAACACAGCAACC 59.344 57.895 0.00 0.00 46.76 3.77
485 930 0.109086 CCTGAGCTTGACATCGACGT 60.109 55.000 0.00 0.00 0.00 4.34
487 932 0.460987 CCCCTGAGCTTGACATCGAC 60.461 60.000 0.00 0.00 0.00 4.20
490 935 0.908198 AGTCCCCTGAGCTTGACATC 59.092 55.000 0.00 0.00 0.00 3.06
491 936 0.908198 GAGTCCCCTGAGCTTGACAT 59.092 55.000 0.00 0.00 0.00 3.06
517 962 7.339466 ACAGGAAAGAAAATTACAGTCAACACT 59.661 33.333 0.00 0.00 0.00 3.55
518 963 7.432252 CACAGGAAAGAAAATTACAGTCAACAC 59.568 37.037 0.00 0.00 0.00 3.32
519 964 7.338196 TCACAGGAAAGAAAATTACAGTCAACA 59.662 33.333 0.00 0.00 0.00 3.33
520 965 7.703328 TCACAGGAAAGAAAATTACAGTCAAC 58.297 34.615 0.00 0.00 0.00 3.18
525 970 9.350357 CATCAATCACAGGAAAGAAAATTACAG 57.650 33.333 0.00 0.00 0.00 2.74
567 1012 4.972591 GCTGGTGCTCGCATTTTT 57.027 50.000 0.00 0.00 36.03 1.94
592 1037 6.577638 GCCTACCAGGGTCATTTAAGTCTTAA 60.578 42.308 0.65 0.65 35.37 1.85
596 1041 3.054655 TGCCTACCAGGGTCATTTAAGTC 60.055 47.826 0.00 0.00 35.37 3.01
601 1046 3.393687 TCTATGCCTACCAGGGTCATTT 58.606 45.455 0.00 0.00 35.37 2.32
605 1050 2.832733 GGTATCTATGCCTACCAGGGTC 59.167 54.545 0.00 0.00 37.83 4.46
606 1051 2.181419 TGGTATCTATGCCTACCAGGGT 59.819 50.000 0.00 0.00 41.85 4.34
607 1052 2.567615 GTGGTATCTATGCCTACCAGGG 59.432 54.545 1.79 0.00 46.05 4.45
608 1053 3.259374 CAGTGGTATCTATGCCTACCAGG 59.741 52.174 1.79 0.00 46.05 4.45
609 1054 3.898123 ACAGTGGTATCTATGCCTACCAG 59.102 47.826 1.79 0.00 46.05 4.00
613 1058 6.611785 AGAAGTACAGTGGTATCTATGCCTA 58.388 40.000 0.00 0.00 33.30 3.93
614 1059 5.459505 AGAAGTACAGTGGTATCTATGCCT 58.540 41.667 0.00 0.00 33.30 4.75
615 1060 5.793030 AGAAGTACAGTGGTATCTATGCC 57.207 43.478 0.00 0.00 0.00 4.40
616 1061 7.146648 GGTTAGAAGTACAGTGGTATCTATGC 58.853 42.308 0.00 0.00 0.00 3.14
617 1062 7.013083 ACGGTTAGAAGTACAGTGGTATCTATG 59.987 40.741 0.00 0.00 0.00 2.23
619 1064 6.418101 ACGGTTAGAAGTACAGTGGTATCTA 58.582 40.000 0.00 0.00 0.00 1.98
628 1073 4.656041 CGGTAGAACGGTTAGAAGTACAG 58.344 47.826 0.00 0.00 0.00 2.74
642 1087 1.068055 TGAGAAGCGAACCGGTAGAAC 60.068 52.381 8.00 0.00 36.27 3.01
663 1108 8.429641 GGGATAAGATCTACCAGTAAACAATGA 58.570 37.037 13.14 0.00 0.00 2.57
667 1112 9.310449 GATAGGGATAAGATCTACCAGTAAACA 57.690 37.037 13.14 0.00 0.00 2.83
719 1164 7.096023 GCTCGAATACATGTACTCTGGTATTTG 60.096 40.741 7.96 1.40 36.77 2.32
720 1165 6.924060 GCTCGAATACATGTACTCTGGTATTT 59.076 38.462 7.96 0.00 36.77 1.40
968 1422 1.068264 TGATATGGTGATCGCTCGCTC 60.068 52.381 6.18 0.07 32.30 5.03
1221 1691 1.675714 CGCTTGTGGAACCTGAGCATA 60.676 52.381 11.59 0.00 36.46 3.14
1423 1897 1.065109 CGACATGGATGCGACGGTA 59.935 57.895 0.00 0.00 32.02 4.02
1486 1960 4.548494 CAGGTTACGTACACACACATACA 58.452 43.478 0.00 0.00 0.00 2.29
1489 1963 2.224090 TGCAGGTTACGTACACACACAT 60.224 45.455 0.00 0.00 0.00 3.21
1490 1964 1.136500 TGCAGGTTACGTACACACACA 59.864 47.619 0.00 0.00 0.00 3.72
1491 1965 1.523934 GTGCAGGTTACGTACACACAC 59.476 52.381 8.04 7.07 31.02 3.82
1492 1966 1.855513 GTGCAGGTTACGTACACACA 58.144 50.000 8.04 0.00 31.02 3.72
1493 1967 0.780002 CGTGCAGGTTACGTACACAC 59.220 55.000 12.15 7.85 36.83 3.82
1494 1968 3.182538 CGTGCAGGTTACGTACACA 57.817 52.632 12.15 0.00 36.83 3.72
1574 2048 6.765036 ACAAATTAATCAACCACAATGCACAA 59.235 30.769 0.00 0.00 0.00 3.33
1606 2083 5.105877 GCACATCGATGGCCTAATAGTACTA 60.106 44.000 28.09 4.77 0.00 1.82
1607 2084 4.322049 GCACATCGATGGCCTAATAGTACT 60.322 45.833 28.09 0.00 0.00 2.73
1608 2085 3.927142 GCACATCGATGGCCTAATAGTAC 59.073 47.826 28.09 0.00 0.00 2.73
1609 2086 3.366985 CGCACATCGATGGCCTAATAGTA 60.367 47.826 28.09 0.00 41.67 1.82
1610 2087 2.610479 CGCACATCGATGGCCTAATAGT 60.610 50.000 28.09 1.89 41.67 2.12
1611 2088 1.995484 CGCACATCGATGGCCTAATAG 59.005 52.381 28.09 11.26 41.67 1.73
1756 2301 4.570772 GCTATCAGCGAAAACATCACCTTA 59.429 41.667 0.00 0.00 0.00 2.69
1824 2369 5.617609 CACATACTCACACAACATTAACCG 58.382 41.667 0.00 0.00 0.00 4.44
1825 2370 5.390613 GCACATACTCACACAACATTAACC 58.609 41.667 0.00 0.00 0.00 2.85
1826 2371 5.049060 TGGCACATACTCACACAACATTAAC 60.049 40.000 0.00 0.00 0.00 2.01
1827 2372 5.066593 TGGCACATACTCACACAACATTAA 58.933 37.500 0.00 0.00 0.00 1.40
1828 2373 4.646572 TGGCACATACTCACACAACATTA 58.353 39.130 0.00 0.00 0.00 1.90
1829 2374 3.485394 TGGCACATACTCACACAACATT 58.515 40.909 0.00 0.00 0.00 2.71
1830 2375 3.138884 TGGCACATACTCACACAACAT 57.861 42.857 0.00 0.00 0.00 2.71
1831 2376 2.629336 TGGCACATACTCACACAACA 57.371 45.000 0.00 0.00 0.00 3.33
1849 2394 1.351017 ACCACCAGTCCACCACTAATG 59.649 52.381 0.00 0.00 32.21 1.90
1850 2395 1.351017 CACCACCAGTCCACCACTAAT 59.649 52.381 0.00 0.00 32.21 1.73
1851 2396 0.762418 CACCACCAGTCCACCACTAA 59.238 55.000 0.00 0.00 32.21 2.24
1852 2397 0.399376 ACACCACCAGTCCACCACTA 60.399 55.000 0.00 0.00 32.21 2.74
1853 2398 0.399376 TACACCACCAGTCCACCACT 60.399 55.000 0.00 0.00 34.67 4.00
1854 2399 0.690762 ATACACCACCAGTCCACCAC 59.309 55.000 0.00 0.00 0.00 4.16
1875 2451 4.391830 CACCGAATACAACACAACATAGCT 59.608 41.667 0.00 0.00 0.00 3.32
1960 2536 4.453136 TGGCGTTATCTGAAACAGGTTTAC 59.547 41.667 0.00 0.00 32.11 2.01
1966 2542 4.324402 GCAAAATGGCGTTATCTGAAACAG 59.676 41.667 0.00 0.00 0.00 3.16
1973 2549 5.931146 TCAATTTTGCAAAATGGCGTTATCT 59.069 32.000 32.23 14.51 38.53 1.98
2011 2587 7.373617 AGGACCATGTCAACCTTTTATTTTT 57.626 32.000 0.00 0.00 33.68 1.94
2017 2593 3.397955 ACCTAGGACCATGTCAACCTTTT 59.602 43.478 17.98 0.00 33.68 2.27
2033 2609 8.295175 TTGACGCACAATACTAGGAACCTAGG 62.295 46.154 25.52 7.41 40.57 3.02
2046 2622 4.679197 GCACAATTCTTTTGACGCACAATA 59.321 37.500 0.00 0.00 38.36 1.90
2116 2692 6.358178 TGTACTAACAAAATCACTCCCAACA 58.642 36.000 0.00 0.00 30.91 3.33
2117 2693 6.870971 TGTACTAACAAAATCACTCCCAAC 57.129 37.500 0.00 0.00 30.91 3.77
2169 2794 7.254795 GGAGTATTCCTGTATCAATGGAAAACG 60.255 40.741 0.00 0.00 42.28 3.60
2174 2799 5.825593 GGGAGTATTCCTGTATCAATGGA 57.174 43.478 4.04 0.00 43.49 3.41
2186 2811 1.335132 TGGGACGCAGGGAGTATTCC 61.335 60.000 0.00 0.00 43.23 3.01
2187 2812 0.759346 ATGGGACGCAGGGAGTATTC 59.241 55.000 0.00 0.00 0.00 1.75
2188 2813 2.097110 TATGGGACGCAGGGAGTATT 57.903 50.000 0.00 0.00 0.00 1.89
2189 2814 2.097110 TTATGGGACGCAGGGAGTAT 57.903 50.000 0.00 0.00 0.00 2.12
2190 2815 2.097110 ATTATGGGACGCAGGGAGTA 57.903 50.000 0.00 0.00 0.00 2.59
2191 2816 2.097110 TATTATGGGACGCAGGGAGT 57.903 50.000 0.00 0.00 0.00 3.85
2192 2817 4.466370 TCTTATATTATGGGACGCAGGGAG 59.534 45.833 0.00 0.00 0.00 4.30
2193 2818 4.422057 TCTTATATTATGGGACGCAGGGA 58.578 43.478 0.00 0.00 0.00 4.20
2194 2819 4.759782 CTCTTATATTATGGGACGCAGGG 58.240 47.826 0.00 0.00 0.00 4.45
2195 2820 4.184629 GCTCTTATATTATGGGACGCAGG 58.815 47.826 0.00 0.00 0.00 4.85
2196 2821 3.859961 CGCTCTTATATTATGGGACGCAG 59.140 47.826 0.00 0.00 0.00 5.18
2197 2822 3.257375 ACGCTCTTATATTATGGGACGCA 59.743 43.478 0.00 0.00 0.00 5.24
2198 2823 3.846360 ACGCTCTTATATTATGGGACGC 58.154 45.455 0.00 0.00 0.00 5.19
2199 2824 7.758076 TCATAAACGCTCTTATATTATGGGACG 59.242 37.037 0.00 0.00 35.62 4.79
2200 2825 8.870879 GTCATAAACGCTCTTATATTATGGGAC 58.129 37.037 0.00 0.00 35.62 4.46
2201 2826 8.590204 TGTCATAAACGCTCTTATATTATGGGA 58.410 33.333 0.00 0.00 35.62 4.37
2202 2827 8.656849 GTGTCATAAACGCTCTTATATTATGGG 58.343 37.037 0.00 0.00 35.62 4.00
2203 2828 9.424319 AGTGTCATAAACGCTCTTATATTATGG 57.576 33.333 0.00 0.00 45.69 2.74
2207 2832 9.245962 GTGTAGTGTCATAAACGCTCTTATATT 57.754 33.333 0.00 0.00 45.69 1.28
2208 2833 8.630917 AGTGTAGTGTCATAAACGCTCTTATAT 58.369 33.333 0.00 0.00 45.69 0.86
2209 2834 7.993101 AGTGTAGTGTCATAAACGCTCTTATA 58.007 34.615 0.00 0.00 45.69 0.98
2210 2835 6.864342 AGTGTAGTGTCATAAACGCTCTTAT 58.136 36.000 0.00 0.00 45.69 1.73
2211 2836 6.263516 AGTGTAGTGTCATAAACGCTCTTA 57.736 37.500 0.00 0.00 45.69 2.10
2212 2837 5.135508 AGTGTAGTGTCATAAACGCTCTT 57.864 39.130 0.00 0.00 45.69 2.85
2213 2838 4.785511 AGTGTAGTGTCATAAACGCTCT 57.214 40.909 0.00 0.00 45.69 4.09
2214 2839 5.512082 CACTAGTGTAGTGTCATAAACGCTC 59.488 44.000 15.06 0.00 45.69 5.03
2239 2864 9.537192 CGTCCCATAATATAAGTGTGTCTTTTA 57.463 33.333 0.00 0.00 37.56 1.52
2240 2865 7.497909 CCGTCCCATAATATAAGTGTGTCTTTT 59.502 37.037 0.00 0.00 37.56 2.27
2241 2866 6.990349 CCGTCCCATAATATAAGTGTGTCTTT 59.010 38.462 0.00 0.00 37.56 2.52
2242 2867 6.325545 TCCGTCCCATAATATAAGTGTGTCTT 59.674 38.462 0.00 0.00 39.89 3.01
2243 2868 5.836898 TCCGTCCCATAATATAAGTGTGTCT 59.163 40.000 0.00 0.00 0.00 3.41
2244 2869 6.092955 TCCGTCCCATAATATAAGTGTGTC 57.907 41.667 0.00 0.00 0.00 3.67
2245 2870 5.011738 CCTCCGTCCCATAATATAAGTGTGT 59.988 44.000 0.00 0.00 0.00 3.72
2246 2871 5.479306 CCTCCGTCCCATAATATAAGTGTG 58.521 45.833 0.00 0.00 0.00 3.82
2247 2872 4.530946 CCCTCCGTCCCATAATATAAGTGT 59.469 45.833 0.00 0.00 0.00 3.55
2248 2873 4.775780 TCCCTCCGTCCCATAATATAAGTG 59.224 45.833 0.00 0.00 0.00 3.16
2249 2874 5.019657 TCCCTCCGTCCCATAATATAAGT 57.980 43.478 0.00 0.00 0.00 2.24
2250 2875 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2251 2876 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2252 2877 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2253 2878 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2254 2879 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2255 2880 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2256 2881 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2257 2882 3.140707 TGTATTACTCCCTCCGTCCCATA 59.859 47.826 0.00 0.00 0.00 2.74
2258 2883 2.090943 TGTATTACTCCCTCCGTCCCAT 60.091 50.000 0.00 0.00 0.00 4.00
2259 2884 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
2260 2885 2.077687 TGTATTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
2261 2886 5.337330 CCAATATGTATTACTCCCTCCGTCC 60.337 48.000 0.00 0.00 0.00 4.79
2262 2887 5.245526 ACCAATATGTATTACTCCCTCCGTC 59.754 44.000 0.00 0.00 0.00 4.79
2263 2888 5.011738 CACCAATATGTATTACTCCCTCCGT 59.988 44.000 0.00 0.00 0.00 4.69
2264 2889 5.245301 TCACCAATATGTATTACTCCCTCCG 59.755 44.000 0.00 0.00 0.00 4.63
2265 2890 6.497259 TCTCACCAATATGTATTACTCCCTCC 59.503 42.308 0.00 0.00 0.00 4.30
2266 2891 7.540474 TCTCACCAATATGTATTACTCCCTC 57.460 40.000 0.00 0.00 0.00 4.30
2267 2892 7.473511 GCTTCTCACCAATATGTATTACTCCCT 60.474 40.741 0.00 0.00 0.00 4.20
2268 2893 6.651225 GCTTCTCACCAATATGTATTACTCCC 59.349 42.308 0.00 0.00 0.00 4.30
2272 2897 7.786178 TGTGCTTCTCACCAATATGTATTAC 57.214 36.000 0.00 0.00 45.03 1.89
2291 2916 5.858381 TCTTAGTCTTGATGTCTTTGTGCT 58.142 37.500 0.00 0.00 0.00 4.40
2292 2917 6.593382 AGATCTTAGTCTTGATGTCTTTGTGC 59.407 38.462 0.00 0.00 0.00 4.57
2293 2918 8.545229 AAGATCTTAGTCTTGATGTCTTTGTG 57.455 34.615 6.06 0.00 37.08 3.33
2295 2920 8.802856 CGTAAGATCTTAGTCTTGATGTCTTTG 58.197 37.037 15.58 0.00 38.79 2.77
2298 2923 6.603997 ACCGTAAGATCTTAGTCTTGATGTCT 59.396 38.462 15.58 0.00 38.79 3.41
2305 2930 4.159879 CCACCACCGTAAGATCTTAGTCTT 59.840 45.833 15.58 0.00 41.18 3.01
2307 2932 3.181478 CCCACCACCGTAAGATCTTAGTC 60.181 52.174 15.58 4.38 43.02 2.59
2312 2937 0.617820 AGCCCACCACCGTAAGATCT 60.618 55.000 0.00 0.00 43.02 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.