Multiple sequence alignment - TraesCS3B01G488600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G488600 chr3B 100.000 2210 0 0 1 2210 734484121 734486330 0.000000e+00 4082.0
1 TraesCS3B01G488600 chr3B 78.367 490 88 13 161 645 629955903 629956379 3.570000e-78 302.0
2 TraesCS3B01G488600 chr5B 88.154 650 61 13 1 641 608341933 608341291 0.000000e+00 760.0
3 TraesCS3B01G488600 chr5B 86.769 650 64 14 1 641 608201066 608200430 0.000000e+00 704.0
4 TraesCS3B01G488600 chr5B 94.483 435 23 1 1776 2210 335746797 335746364 0.000000e+00 669.0
5 TraesCS3B01G488600 chr3D 89.649 570 24 15 765 1307 553242228 553242789 0.000000e+00 693.0
6 TraesCS3B01G488600 chr3D 79.585 578 109 7 1 576 473729493 473730063 2.640000e-109 405.0
7 TraesCS3B01G488600 chr3D 89.560 182 13 2 1327 1505 553242851 553243029 2.210000e-55 226.0
8 TraesCS3B01G488600 chr3D 90.164 122 8 2 1557 1675 553243098 553243218 2.940000e-34 156.0
9 TraesCS3B01G488600 chr3D 97.727 44 1 0 682 725 553242169 553242212 2.350000e-10 76.8
10 TraesCS3B01G488600 chr2B 94.713 435 22 1 1776 2210 461572557 461572990 0.000000e+00 675.0
11 TraesCS3B01G488600 chr2B 81.310 626 100 15 7 626 142247840 142247226 1.970000e-135 492.0
12 TraesCS3B01G488600 chr1A 94.713 435 22 1 1776 2210 432878611 432878178 0.000000e+00 675.0
13 TraesCS3B01G488600 chr1A 89.171 434 41 4 65 496 395493998 395493569 8.980000e-149 536.0
14 TraesCS3B01G488600 chr5A 94.495 436 22 2 1776 2210 572036744 572036310 0.000000e+00 671.0
15 TraesCS3B01G488600 chr5A 93.919 444 23 4 1769 2210 502534272 502534713 0.000000e+00 667.0
16 TraesCS3B01G488600 chr5A 94.266 436 22 3 1776 2210 2861093 2860660 0.000000e+00 664.0
17 TraesCS3B01G488600 chr1D 94.495 436 23 1 1776 2210 457163112 457163547 0.000000e+00 671.0
18 TraesCS3B01G488600 chr1B 94.495 436 21 3 1776 2210 684678669 684678236 0.000000e+00 669.0
19 TraesCS3B01G488600 chr4B 94.860 428 21 1 1775 2201 247463052 247463479 0.000000e+00 667.0
20 TraesCS3B01G488600 chr3A 93.377 453 12 10 861 1298 689514184 689514633 0.000000e+00 654.0
21 TraesCS3B01G488600 chr3A 89.130 230 18 5 1327 1556 689514704 689514926 1.670000e-71 279.0
22 TraesCS3B01G488600 chr3A 87.446 231 17 5 1558 1776 689514955 689515185 2.820000e-64 255.0
23 TraesCS3B01G488600 chr3A 94.186 86 4 1 676 760 689513040 689513125 1.780000e-26 130.0
24 TraesCS3B01G488600 chr3A 100.000 54 0 0 700 753 689514099 689514152 1.400000e-17 100.0
25 TraesCS3B01G488600 chr5D 82.016 645 107 6 4 645 217915605 217916243 6.940000e-150 540.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G488600 chr3B 734484121 734486330 2209 False 4082.00 4082 100.0000 1 2210 1 chr3B.!!$F2 2209
1 TraesCS3B01G488600 chr5B 608341291 608341933 642 True 760.00 760 88.1540 1 641 1 chr5B.!!$R3 640
2 TraesCS3B01G488600 chr5B 608200430 608201066 636 True 704.00 704 86.7690 1 641 1 chr5B.!!$R2 640
3 TraesCS3B01G488600 chr3D 473729493 473730063 570 False 405.00 405 79.5850 1 576 1 chr3D.!!$F1 575
4 TraesCS3B01G488600 chr3D 553242169 553243218 1049 False 287.95 693 91.7750 682 1675 4 chr3D.!!$F2 993
5 TraesCS3B01G488600 chr2B 142247226 142247840 614 True 492.00 492 81.3100 7 626 1 chr2B.!!$R1 619
6 TraesCS3B01G488600 chr3A 689513040 689515185 2145 False 283.60 654 92.8278 676 1776 5 chr3A.!!$F1 1100
7 TraesCS3B01G488600 chr5D 217915605 217916243 638 False 540.00 540 82.0160 4 645 1 chr5D.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1887 0.0982 GCCGAACAAAACTATCCGCC 59.902 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 3019 0.036732 CTGGCTTGGCTTGTACTCCA 59.963 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.092081 GCACAATTCACGTGGAAGC 57.908 52.632 17.00 6.94 39.30 3.86
80 81 2.427453 CCTACGTAACAGATGCTGGACT 59.573 50.000 0.00 0.00 35.51 3.85
93 94 4.193826 TGCTGGACTTCTGACAGATTAC 57.806 45.455 5.87 0.00 34.21 1.89
98 99 3.192844 GGACTTCTGACAGATTACCACGA 59.807 47.826 5.87 0.00 0.00 4.35
188 190 1.340889 GCCCAATGTGTCTTTGCAAGA 59.659 47.619 0.00 0.00 34.51 3.02
241 248 6.068010 TGAACAAACAAGAGTGGATACCAAT 58.932 36.000 0.00 0.00 34.18 3.16
244 251 5.163513 CAAACAAGAGTGGATACCAATTGC 58.836 41.667 0.00 0.00 34.18 3.56
310 317 3.762407 TGGAGACGGAAAAGATGTTCA 57.238 42.857 0.00 0.00 0.00 3.18
313 320 4.003648 GGAGACGGAAAAGATGTTCATGT 58.996 43.478 0.00 0.00 0.00 3.21
314 321 4.455877 GGAGACGGAAAAGATGTTCATGTT 59.544 41.667 0.00 0.00 0.00 2.71
321 328 5.409826 GGAAAAGATGTTCATGTTCTCGTCT 59.590 40.000 0.00 0.00 0.00 4.18
353 360 4.522114 TGTGGGAATTATGAAAGCATCGA 58.478 39.130 0.00 0.00 35.94 3.59
381 388 1.952990 TCGTGTTTGATGGTGCAACAT 59.047 42.857 19.35 19.35 39.98 2.71
394 401 2.557924 GTGCAACATCATTGGTGGAAGA 59.442 45.455 1.31 0.00 43.02 2.87
399 406 4.222124 ACATCATTGGTGGAAGAGGTAC 57.778 45.455 1.31 0.00 0.00 3.34
400 407 5.804446 CAACATCATTGGTGGAAGAGGTACT 60.804 44.000 1.31 0.00 38.13 2.73
436 443 2.303022 GGCCGAGGATAGATCATGGAAA 59.697 50.000 0.00 0.00 0.00 3.13
440 447 5.368145 CCGAGGATAGATCATGGAAAACAA 58.632 41.667 0.00 0.00 0.00 2.83
462 469 1.521450 GGCATCATCAAGGCGGATGG 61.521 60.000 17.97 7.77 43.82 3.51
470 477 2.066999 AAGGCGGATGGGGAGAGTC 61.067 63.158 0.00 0.00 0.00 3.36
499 506 1.755380 GCTCTAACGGTGGGTAGTGAT 59.245 52.381 0.00 0.00 0.00 3.06
581 590 1.478631 CCCAAAATGAAGGGGCTCTC 58.521 55.000 0.00 0.00 41.58 3.20
591 600 4.611119 GGGCTCTCTACCCCTCTC 57.389 66.667 0.00 0.00 42.01 3.20
592 601 1.935191 GGGCTCTCTACCCCTCTCT 59.065 63.158 0.00 0.00 42.01 3.10
617 630 8.242085 TCTCTCTCTTCTATAATAAGTACGCG 57.758 38.462 3.53 3.53 0.00 6.01
623 636 8.593492 TCTTCTATAATAAGTACGCGTACTCA 57.407 34.615 42.34 33.98 44.96 3.41
627 640 3.703286 ATAAGTACGCGTACTCATGCA 57.297 42.857 42.34 27.51 44.96 3.96
632 645 4.617959 AGTACGCGTACTCATGCATATTT 58.382 39.130 38.93 17.97 42.30 1.40
635 648 3.868661 ACGCGTACTCATGCATATTTGAA 59.131 39.130 11.67 0.00 36.39 2.69
760 773 2.270205 CCCCAGCTGCAGTGTAGG 59.730 66.667 16.64 11.70 0.00 3.18
761 774 2.437359 CCCAGCTGCAGTGTAGGC 60.437 66.667 16.64 0.00 0.00 3.93
763 776 1.449246 CCAGCTGCAGTGTAGGCTC 60.449 63.158 16.64 0.00 32.30 4.70
803 1837 1.210478 AGCGGTTGCACTGGATAAGAT 59.790 47.619 0.00 0.00 46.23 2.40
813 1847 5.069119 TGCACTGGATAAGATCGACACTAAT 59.931 40.000 0.00 0.00 0.00 1.73
815 1849 6.515862 GCACTGGATAAGATCGACACTAATCT 60.516 42.308 0.00 0.00 33.67 2.40
833 1869 7.425595 CACTAATCTTATCGAAAACGAAAAGGC 59.574 37.037 0.00 0.00 0.00 4.35
837 1873 1.297664 TCGAAAACGAAAAGGCCGAA 58.702 45.000 0.00 0.00 0.00 4.30
851 1887 0.098200 GCCGAACAAAACTATCCGCC 59.902 55.000 0.00 0.00 0.00 6.13
877 1922 0.250295 TCTGGAAACTGCGACCCAAG 60.250 55.000 0.00 0.00 0.00 3.61
890 1938 1.076727 CCCAAGAACCAACCCCCTC 59.923 63.158 0.00 0.00 0.00 4.30
921 1972 2.171940 GCAACGCTCAGCAGAACG 59.828 61.111 0.00 0.00 39.17 3.95
956 2007 3.102985 CCGTCACACCAAACGCAA 58.897 55.556 0.00 0.00 37.56 4.85
971 2022 0.385223 CGCAACAAAGCAGAGCAGAC 60.385 55.000 0.00 0.00 0.00 3.51
972 2023 0.664761 GCAACAAAGCAGAGCAGACA 59.335 50.000 0.00 0.00 0.00 3.41
1299 2368 1.671979 GGTTACCGGCCCAATAACTC 58.328 55.000 0.00 5.38 0.00 3.01
1303 2372 1.523032 CCGGCCCAATAACTCGGTC 60.523 63.158 0.00 0.00 36.38 4.79
1307 2376 0.392461 GCCCAATAACTCGGTCAGCA 60.392 55.000 0.00 0.00 0.00 4.41
1308 2377 1.747206 GCCCAATAACTCGGTCAGCAT 60.747 52.381 0.00 0.00 0.00 3.79
1328 2404 4.201792 GCATGTACTCTGCTTGAGATGTTG 60.202 45.833 12.88 7.21 45.39 3.33
1339 2450 1.610038 TGAGATGTTGCTTGCCTGTTG 59.390 47.619 0.00 0.00 0.00 3.33
1354 2465 0.736053 TGTTGTTTGACCTTGCGGAC 59.264 50.000 0.00 0.00 0.00 4.79
1419 2537 7.480760 TCTGTATATATATGCCAGCTTGTCA 57.519 36.000 14.75 0.00 0.00 3.58
1431 2549 4.318332 CCAGCTTGTCACTTTCAGATGTA 58.682 43.478 0.00 0.00 0.00 2.29
1432 2550 4.391216 CCAGCTTGTCACTTTCAGATGTAG 59.609 45.833 0.00 0.00 0.00 2.74
1433 2551 4.993584 CAGCTTGTCACTTTCAGATGTAGT 59.006 41.667 0.00 0.00 0.00 2.73
1442 2560 9.088512 GTCACTTTCAGATGTAGTATTTCGATT 57.911 33.333 0.00 0.00 0.00 3.34
1447 2565 6.270064 TCAGATGTAGTATTTCGATTCGCAA 58.730 36.000 0.00 0.00 0.00 4.85
1456 2574 5.745653 ATTTCGATTCGCAAATTGTTGAC 57.254 34.783 0.00 0.00 36.83 3.18
1529 2647 0.752009 TGTACAGGCAACCCGCAAAA 60.752 50.000 0.00 0.00 45.17 2.44
1533 2651 3.906879 GGCAACCCGCAAAACCGT 61.907 61.111 0.00 0.00 45.17 4.83
1534 2652 2.354188 GCAACCCGCAAAACCGTC 60.354 61.111 0.00 0.00 41.79 4.79
1667 2824 6.825610 TGAATTAAGGCAAGTGTTTGGAAAT 58.174 32.000 0.00 0.00 34.79 2.17
1751 2909 1.479323 GAGTACGGGAGGCAATACACA 59.521 52.381 0.00 0.00 0.00 3.72
1756 2914 1.872237 CGGGAGGCAATACACATACCG 60.872 57.143 0.00 0.00 0.00 4.02
1757 2915 1.140252 GGGAGGCAATACACATACCGT 59.860 52.381 0.00 0.00 0.00 4.83
1776 2934 6.073327 ACCGTGTATCCGCATATCTATATG 57.927 41.667 5.73 5.73 42.30 1.78
1777 2935 5.593095 ACCGTGTATCCGCATATCTATATGT 59.407 40.000 10.77 0.00 41.63 2.29
1778 2936 6.096423 ACCGTGTATCCGCATATCTATATGTT 59.904 38.462 10.77 0.00 41.63 2.71
1779 2937 7.283807 ACCGTGTATCCGCATATCTATATGTTA 59.716 37.037 10.77 0.00 41.63 2.41
1780 2938 7.803659 CCGTGTATCCGCATATCTATATGTTAG 59.196 40.741 10.77 4.40 41.63 2.34
1781 2939 8.557029 CGTGTATCCGCATATCTATATGTTAGA 58.443 37.037 10.77 6.53 41.63 2.10
1784 2942 9.900710 GTATCCGCATATCTATATGTTAGAAGG 57.099 37.037 10.77 6.28 41.63 3.46
1785 2943 7.348080 TCCGCATATCTATATGTTAGAAGGG 57.652 40.000 10.77 3.48 41.63 3.95
1786 2944 7.123383 TCCGCATATCTATATGTTAGAAGGGA 58.877 38.462 10.77 5.18 41.63 4.20
1787 2945 7.285629 TCCGCATATCTATATGTTAGAAGGGAG 59.714 40.741 10.77 0.00 41.63 4.30
1788 2946 7.285629 CCGCATATCTATATGTTAGAAGGGAGA 59.714 40.741 10.77 0.00 41.63 3.71
1789 2947 8.349245 CGCATATCTATATGTTAGAAGGGAGAG 58.651 40.741 10.77 0.00 41.63 3.20
1790 2948 9.415008 GCATATCTATATGTTAGAAGGGAGAGA 57.585 37.037 10.77 0.00 41.63 3.10
1794 2952 7.695055 TCTATATGTTAGAAGGGAGAGAGAGG 58.305 42.308 0.00 0.00 0.00 3.69
1795 2953 4.890499 ATGTTAGAAGGGAGAGAGAGGA 57.110 45.455 0.00 0.00 0.00 3.71
1796 2954 4.890499 TGTTAGAAGGGAGAGAGAGGAT 57.110 45.455 0.00 0.00 0.00 3.24
1797 2955 5.213868 TGTTAGAAGGGAGAGAGAGGATT 57.786 43.478 0.00 0.00 0.00 3.01
1798 2956 4.959210 TGTTAGAAGGGAGAGAGAGGATTG 59.041 45.833 0.00 0.00 0.00 2.67
1799 2957 3.044873 AGAAGGGAGAGAGAGGATTGG 57.955 52.381 0.00 0.00 0.00 3.16
1800 2958 2.317594 AGAAGGGAGAGAGAGGATTGGT 59.682 50.000 0.00 0.00 0.00 3.67
1801 2959 2.173126 AGGGAGAGAGAGGATTGGTG 57.827 55.000 0.00 0.00 0.00 4.17
1802 2960 1.127343 GGGAGAGAGAGGATTGGTGG 58.873 60.000 0.00 0.00 0.00 4.61
1803 2961 1.343478 GGGAGAGAGAGGATTGGTGGA 60.343 57.143 0.00 0.00 0.00 4.02
1804 2962 2.472029 GGAGAGAGAGGATTGGTGGAA 58.528 52.381 0.00 0.00 0.00 3.53
1805 2963 3.044894 GGAGAGAGAGGATTGGTGGAAT 58.955 50.000 0.00 0.00 0.00 3.01
1806 2964 4.227197 GGAGAGAGAGGATTGGTGGAATA 58.773 47.826 0.00 0.00 0.00 1.75
1807 2965 4.283212 GGAGAGAGAGGATTGGTGGAATAG 59.717 50.000 0.00 0.00 0.00 1.73
1808 2966 4.889780 AGAGAGAGGATTGGTGGAATAGT 58.110 43.478 0.00 0.00 0.00 2.12
1809 2967 5.284582 AGAGAGAGGATTGGTGGAATAGTT 58.715 41.667 0.00 0.00 0.00 2.24
1810 2968 5.130145 AGAGAGAGGATTGGTGGAATAGTTG 59.870 44.000 0.00 0.00 0.00 3.16
1811 2969 4.785376 AGAGAGGATTGGTGGAATAGTTGT 59.215 41.667 0.00 0.00 0.00 3.32
1812 2970 5.251700 AGAGAGGATTGGTGGAATAGTTGTT 59.748 40.000 0.00 0.00 0.00 2.83
1813 2971 5.256474 AGAGGATTGGTGGAATAGTTGTTG 58.744 41.667 0.00 0.00 0.00 3.33
1814 2972 4.998051 AGGATTGGTGGAATAGTTGTTGT 58.002 39.130 0.00 0.00 0.00 3.32
1815 2973 6.012858 AGAGGATTGGTGGAATAGTTGTTGTA 60.013 38.462 0.00 0.00 0.00 2.41
1816 2974 6.731467 AGGATTGGTGGAATAGTTGTTGTAT 58.269 36.000 0.00 0.00 0.00 2.29
1817 2975 7.182060 AGGATTGGTGGAATAGTTGTTGTATT 58.818 34.615 0.00 0.00 0.00 1.89
1818 2976 7.122650 AGGATTGGTGGAATAGTTGTTGTATTG 59.877 37.037 0.00 0.00 0.00 1.90
1819 2977 5.637006 TGGTGGAATAGTTGTTGTATTGC 57.363 39.130 0.00 0.00 0.00 3.56
1820 2978 5.321102 TGGTGGAATAGTTGTTGTATTGCT 58.679 37.500 0.00 0.00 31.43 3.91
1821 2979 5.772672 TGGTGGAATAGTTGTTGTATTGCTT 59.227 36.000 0.00 0.00 31.43 3.91
1822 2980 6.092748 GGTGGAATAGTTGTTGTATTGCTTG 58.907 40.000 0.00 0.00 31.43 4.01
1823 2981 6.072175 GGTGGAATAGTTGTTGTATTGCTTGA 60.072 38.462 0.00 0.00 31.43 3.02
1824 2982 7.023575 GTGGAATAGTTGTTGTATTGCTTGAG 58.976 38.462 0.00 0.00 31.43 3.02
1825 2983 6.030228 GGAATAGTTGTTGTATTGCTTGAGC 58.970 40.000 0.00 0.00 42.50 4.26
1826 2984 3.923017 AGTTGTTGTATTGCTTGAGCC 57.077 42.857 0.00 0.00 41.18 4.70
1827 2985 3.490348 AGTTGTTGTATTGCTTGAGCCT 58.510 40.909 0.00 0.00 41.18 4.58
1828 2986 3.503748 AGTTGTTGTATTGCTTGAGCCTC 59.496 43.478 0.00 0.00 41.18 4.70
1829 2987 2.076100 TGTTGTATTGCTTGAGCCTCG 58.924 47.619 0.00 0.00 41.18 4.63
1830 2988 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
1831 2989 2.472695 TGTATTGCTTGAGCCTCGTT 57.527 45.000 0.00 0.00 41.18 3.85
1832 2990 2.076100 TGTATTGCTTGAGCCTCGTTG 58.924 47.619 0.00 0.00 41.18 4.10
1833 2991 1.398390 GTATTGCTTGAGCCTCGTTGG 59.602 52.381 0.00 0.00 41.18 3.77
1848 3006 6.716934 CCTCGTTGGCATATATATAGGAGT 57.283 41.667 8.56 0.00 0.00 3.85
1849 3007 7.818997 CCTCGTTGGCATATATATAGGAGTA 57.181 40.000 8.56 0.00 0.00 2.59
1850 3008 7.649973 CCTCGTTGGCATATATATAGGAGTAC 58.350 42.308 8.56 1.95 0.00 2.73
1851 3009 7.284716 CCTCGTTGGCATATATATAGGAGTACA 59.715 40.741 8.56 0.00 0.00 2.90
1852 3010 8.762481 TCGTTGGCATATATATAGGAGTACAT 57.238 34.615 8.56 0.00 0.00 2.29
1853 3011 8.630037 TCGTTGGCATATATATAGGAGTACATG 58.370 37.037 8.56 0.00 0.00 3.21
1854 3012 8.630037 CGTTGGCATATATATAGGAGTACATGA 58.370 37.037 8.56 0.00 0.00 3.07
1865 3023 9.693739 ATATAGGAGTACATGATCTACTTGGAG 57.306 37.037 0.00 0.00 0.00 3.86
1866 3024 5.772004 AGGAGTACATGATCTACTTGGAGT 58.228 41.667 0.00 0.00 0.00 3.85
1867 3025 6.912426 AGGAGTACATGATCTACTTGGAGTA 58.088 40.000 0.00 0.00 0.00 2.59
1868 3026 6.773685 AGGAGTACATGATCTACTTGGAGTAC 59.226 42.308 0.00 0.00 0.00 2.73
1869 3027 6.546403 GGAGTACATGATCTACTTGGAGTACA 59.454 42.308 0.00 0.00 0.00 2.90
1870 3028 7.068348 GGAGTACATGATCTACTTGGAGTACAA 59.932 40.741 0.00 0.00 37.55 2.41
1878 3036 3.339547 TTGGAGTACAAGCCAAGCC 57.660 52.632 9.86 0.00 39.14 4.35
1879 3037 0.476338 TTGGAGTACAAGCCAAGCCA 59.524 50.000 9.86 0.00 39.14 4.75
1880 3038 0.036732 TGGAGTACAAGCCAAGCCAG 59.963 55.000 0.00 0.00 0.00 4.85
1881 3039 0.324943 GGAGTACAAGCCAAGCCAGA 59.675 55.000 0.00 0.00 0.00 3.86
1882 3040 1.271379 GGAGTACAAGCCAAGCCAGAA 60.271 52.381 0.00 0.00 0.00 3.02
1883 3041 2.619074 GGAGTACAAGCCAAGCCAGAAT 60.619 50.000 0.00 0.00 0.00 2.40
1884 3042 3.370527 GGAGTACAAGCCAAGCCAGAATA 60.371 47.826 0.00 0.00 0.00 1.75
1885 3043 4.455606 GAGTACAAGCCAAGCCAGAATAT 58.544 43.478 0.00 0.00 0.00 1.28
1886 3044 4.860022 AGTACAAGCCAAGCCAGAATATT 58.140 39.130 0.00 0.00 0.00 1.28
1887 3045 5.264395 AGTACAAGCCAAGCCAGAATATTT 58.736 37.500 0.00 0.00 0.00 1.40
1888 3046 4.725790 ACAAGCCAAGCCAGAATATTTC 57.274 40.909 0.00 0.00 0.00 2.17
1889 3047 3.448660 ACAAGCCAAGCCAGAATATTTCC 59.551 43.478 0.00 0.00 0.00 3.13
1890 3048 3.677156 AGCCAAGCCAGAATATTTCCT 57.323 42.857 0.00 0.00 0.00 3.36
1891 3049 4.796110 AGCCAAGCCAGAATATTTCCTA 57.204 40.909 0.00 0.00 0.00 2.94
1892 3050 4.723309 AGCCAAGCCAGAATATTTCCTAG 58.277 43.478 0.00 0.00 0.00 3.02
1893 3051 4.166919 AGCCAAGCCAGAATATTTCCTAGT 59.833 41.667 0.00 0.00 0.00 2.57
1894 3052 4.517075 GCCAAGCCAGAATATTTCCTAGTC 59.483 45.833 0.00 0.00 0.00 2.59
1895 3053 5.688766 GCCAAGCCAGAATATTTCCTAGTCT 60.689 44.000 0.00 0.00 35.19 3.24
1896 3054 6.464465 GCCAAGCCAGAATATTTCCTAGTCTA 60.464 42.308 0.00 0.00 33.14 2.59
1897 3055 7.509546 CCAAGCCAGAATATTTCCTAGTCTAA 58.490 38.462 0.00 0.00 33.14 2.10
1898 3056 7.442666 CCAAGCCAGAATATTTCCTAGTCTAAC 59.557 40.741 0.00 0.00 33.14 2.34
1899 3057 7.068686 AGCCAGAATATTTCCTAGTCTAACC 57.931 40.000 0.00 0.00 33.14 2.85
1900 3058 6.847036 AGCCAGAATATTTCCTAGTCTAACCT 59.153 38.462 0.00 0.00 33.14 3.50
1901 3059 8.011290 AGCCAGAATATTTCCTAGTCTAACCTA 58.989 37.037 0.00 0.00 33.14 3.08
1902 3060 8.817876 GCCAGAATATTTCCTAGTCTAACCTAT 58.182 37.037 0.00 0.00 33.14 2.57
1909 3067 8.625467 ATTTCCTAGTCTAACCTATGTTTCCT 57.375 34.615 0.00 0.00 35.87 3.36
1910 3068 9.725206 ATTTCCTAGTCTAACCTATGTTTCCTA 57.275 33.333 0.00 0.00 35.87 2.94
1911 3069 9.551339 TTTCCTAGTCTAACCTATGTTTCCTAA 57.449 33.333 0.00 0.00 35.87 2.69
1912 3070 9.725206 TTCCTAGTCTAACCTATGTTTCCTAAT 57.275 33.333 0.00 0.00 35.87 1.73
1922 3080 9.920946 AACCTATGTTTCCTAATACAATCACAT 57.079 29.630 0.00 0.00 0.00 3.21
1923 3081 9.920946 ACCTATGTTTCCTAATACAATCACATT 57.079 29.630 0.00 0.00 0.00 2.71
1936 3094 6.469782 ACAATCACATTATTCAACATCCCC 57.530 37.500 0.00 0.00 0.00 4.81
1937 3095 5.363580 ACAATCACATTATTCAACATCCCCC 59.636 40.000 0.00 0.00 0.00 5.40
1952 3110 4.619227 CCCCGCAGTCACAACGGT 62.619 66.667 7.64 0.00 45.49 4.83
1953 3111 2.340809 CCCGCAGTCACAACGGTA 59.659 61.111 7.64 0.00 45.49 4.02
1954 3112 1.736645 CCCGCAGTCACAACGGTAG 60.737 63.158 7.64 0.00 45.49 3.18
1955 3113 2.380410 CCGCAGTCACAACGGTAGC 61.380 63.158 0.43 0.00 42.01 3.58
1956 3114 1.663388 CGCAGTCACAACGGTAGCA 60.663 57.895 0.00 0.00 0.00 3.49
1957 3115 1.218875 CGCAGTCACAACGGTAGCAA 61.219 55.000 0.00 0.00 0.00 3.91
1958 3116 1.156736 GCAGTCACAACGGTAGCAAT 58.843 50.000 0.00 0.00 0.00 3.56
1959 3117 1.135972 GCAGTCACAACGGTAGCAATG 60.136 52.381 0.00 0.00 0.00 2.82
1960 3118 1.135972 CAGTCACAACGGTAGCAATGC 60.136 52.381 0.00 0.00 0.00 3.56
1961 3119 0.871722 GTCACAACGGTAGCAATGCA 59.128 50.000 8.35 0.00 0.00 3.96
1962 3120 1.135972 GTCACAACGGTAGCAATGCAG 60.136 52.381 8.35 0.00 0.00 4.41
1963 3121 1.155889 CACAACGGTAGCAATGCAGA 58.844 50.000 8.35 0.00 0.00 4.26
1964 3122 1.135972 CACAACGGTAGCAATGCAGAC 60.136 52.381 8.35 4.78 0.00 3.51
1965 3123 0.447801 CAACGGTAGCAATGCAGACC 59.552 55.000 16.50 16.50 34.73 3.85
1967 3125 4.617875 GGTAGCAATGCAGACCGT 57.382 55.556 8.35 0.00 29.68 4.83
1968 3126 2.089854 GGTAGCAATGCAGACCGTG 58.910 57.895 8.35 0.00 29.68 4.94
1969 3127 0.391130 GGTAGCAATGCAGACCGTGA 60.391 55.000 8.35 0.00 29.68 4.35
1970 3128 1.002366 GTAGCAATGCAGACCGTGAG 58.998 55.000 8.35 0.00 0.00 3.51
1971 3129 0.894835 TAGCAATGCAGACCGTGAGA 59.105 50.000 8.35 0.00 0.00 3.27
1972 3130 0.671781 AGCAATGCAGACCGTGAGAC 60.672 55.000 8.35 0.00 0.00 3.36
1973 3131 0.671781 GCAATGCAGACCGTGAGACT 60.672 55.000 0.00 0.00 0.00 3.24
1974 3132 1.073964 CAATGCAGACCGTGAGACTG 58.926 55.000 0.00 0.00 37.97 3.51
1975 3133 0.969149 AATGCAGACCGTGAGACTGA 59.031 50.000 0.00 0.00 37.45 3.41
1976 3134 0.969149 ATGCAGACCGTGAGACTGAA 59.031 50.000 0.00 0.00 37.45 3.02
1977 3135 0.315251 TGCAGACCGTGAGACTGAAG 59.685 55.000 0.00 0.00 37.45 3.02
1978 3136 0.598562 GCAGACCGTGAGACTGAAGA 59.401 55.000 0.00 0.00 37.45 2.87
1979 3137 1.000163 GCAGACCGTGAGACTGAAGAA 60.000 52.381 0.00 0.00 37.45 2.52
1980 3138 2.924454 GCAGACCGTGAGACTGAAGAAG 60.924 54.545 0.00 0.00 37.45 2.85
1981 3139 2.554462 CAGACCGTGAGACTGAAGAAGA 59.446 50.000 0.00 0.00 37.45 2.87
1982 3140 3.004839 CAGACCGTGAGACTGAAGAAGAA 59.995 47.826 0.00 0.00 37.45 2.52
1983 3141 3.829601 AGACCGTGAGACTGAAGAAGAAT 59.170 43.478 0.00 0.00 0.00 2.40
1984 3142 4.282195 AGACCGTGAGACTGAAGAAGAATT 59.718 41.667 0.00 0.00 0.00 2.17
1985 3143 4.962155 ACCGTGAGACTGAAGAAGAATTT 58.038 39.130 0.00 0.00 0.00 1.82
1986 3144 4.752101 ACCGTGAGACTGAAGAAGAATTTG 59.248 41.667 0.00 0.00 0.00 2.32
1987 3145 4.991056 CCGTGAGACTGAAGAAGAATTTGA 59.009 41.667 0.00 0.00 0.00 2.69
1988 3146 5.466728 CCGTGAGACTGAAGAAGAATTTGAA 59.533 40.000 0.00 0.00 0.00 2.69
1989 3147 6.347240 CCGTGAGACTGAAGAAGAATTTGAAG 60.347 42.308 0.00 0.00 0.00 3.02
1990 3148 6.347240 CGTGAGACTGAAGAAGAATTTGAAGG 60.347 42.308 0.00 0.00 0.00 3.46
1991 3149 5.471456 TGAGACTGAAGAAGAATTTGAAGGC 59.529 40.000 0.00 0.00 0.00 4.35
1992 3150 5.380043 AGACTGAAGAAGAATTTGAAGGCA 58.620 37.500 0.00 0.00 0.00 4.75
1993 3151 5.829924 AGACTGAAGAAGAATTTGAAGGCAA 59.170 36.000 0.00 0.00 0.00 4.52
1994 3152 6.016443 AGACTGAAGAAGAATTTGAAGGCAAG 60.016 38.462 0.00 0.00 35.04 4.01
1995 3153 4.874970 TGAAGAAGAATTTGAAGGCAAGC 58.125 39.130 0.00 0.00 35.04 4.01
1996 3154 3.949842 AGAAGAATTTGAAGGCAAGCC 57.050 42.857 2.02 2.02 35.04 4.35
1997 3155 2.229784 AGAAGAATTTGAAGGCAAGCCG 59.770 45.455 5.28 0.00 41.95 5.52
1998 3156 1.909700 AGAATTTGAAGGCAAGCCGA 58.090 45.000 5.28 0.00 41.95 5.54
1999 3157 1.541588 AGAATTTGAAGGCAAGCCGAC 59.458 47.619 5.28 4.65 41.95 4.79
2000 3158 0.240945 AATTTGAAGGCAAGCCGACG 59.759 50.000 5.28 0.00 41.95 5.12
2001 3159 1.586154 ATTTGAAGGCAAGCCGACGG 61.586 55.000 10.29 10.29 41.95 4.79
2002 3160 2.668185 TTTGAAGGCAAGCCGACGGA 62.668 55.000 20.50 0.00 41.95 4.69
2003 3161 3.119096 GAAGGCAAGCCGACGGAC 61.119 66.667 20.50 9.27 41.95 4.79
2004 3162 3.876589 GAAGGCAAGCCGACGGACA 62.877 63.158 20.50 0.00 41.95 4.02
2005 3163 4.681978 AGGCAAGCCGACGGACAC 62.682 66.667 20.50 0.00 41.95 3.67
2008 3166 4.003788 CAAGCCGACGGACACCCT 62.004 66.667 20.50 0.79 0.00 4.34
2009 3167 3.692406 AAGCCGACGGACACCCTC 61.692 66.667 20.50 0.00 0.00 4.30
2012 3170 3.307906 CCGACGGACACCCTCCAA 61.308 66.667 8.64 0.00 39.39 3.53
2013 3171 2.738480 CGACGGACACCCTCCAAA 59.262 61.111 0.00 0.00 39.39 3.28
2014 3172 1.374252 CGACGGACACCCTCCAAAG 60.374 63.158 0.00 0.00 39.39 2.77
2015 3173 1.752833 GACGGACACCCTCCAAAGT 59.247 57.895 0.00 0.00 39.39 2.66
2016 3174 0.320508 GACGGACACCCTCCAAAGTC 60.321 60.000 0.00 0.00 39.39 3.01
2017 3175 1.374252 CGGACACCCTCCAAAGTCG 60.374 63.158 0.00 0.00 39.39 4.18
2018 3176 1.752833 GGACACCCTCCAAAGTCGT 59.247 57.895 0.00 0.00 39.21 4.34
2019 3177 0.971386 GGACACCCTCCAAAGTCGTA 59.029 55.000 0.00 0.00 39.21 3.43
2020 3178 1.345415 GGACACCCTCCAAAGTCGTAA 59.655 52.381 0.00 0.00 39.21 3.18
2021 3179 2.410939 GACACCCTCCAAAGTCGTAAC 58.589 52.381 0.00 0.00 0.00 2.50
2022 3180 1.269936 ACACCCTCCAAAGTCGTAACG 60.270 52.381 0.00 0.00 0.00 3.18
2023 3181 0.319405 ACCCTCCAAAGTCGTAACGG 59.681 55.000 0.00 0.00 0.00 4.44
2024 3182 0.319405 CCCTCCAAAGTCGTAACGGT 59.681 55.000 0.00 0.00 0.00 4.83
2025 3183 1.670967 CCCTCCAAAGTCGTAACGGTC 60.671 57.143 0.00 0.00 0.00 4.79
2026 3184 1.334054 CTCCAAAGTCGTAACGGTCG 58.666 55.000 0.00 0.00 0.00 4.79
2027 3185 0.950836 TCCAAAGTCGTAACGGTCGA 59.049 50.000 0.00 0.00 34.91 4.20
2052 3210 3.906718 CGGAGTCGTGGCTAGAGT 58.093 61.111 0.00 0.00 0.00 3.24
2053 3211 1.429825 CGGAGTCGTGGCTAGAGTG 59.570 63.158 0.00 0.00 0.00 3.51
2054 3212 1.810532 GGAGTCGTGGCTAGAGTGG 59.189 63.158 0.00 0.00 0.00 4.00
2055 3213 0.680280 GGAGTCGTGGCTAGAGTGGA 60.680 60.000 0.00 0.00 0.00 4.02
2056 3214 1.174783 GAGTCGTGGCTAGAGTGGAA 58.825 55.000 0.00 0.00 0.00 3.53
2057 3215 1.544691 GAGTCGTGGCTAGAGTGGAAA 59.455 52.381 0.00 0.00 0.00 3.13
2058 3216 1.272769 AGTCGTGGCTAGAGTGGAAAC 59.727 52.381 0.00 0.00 0.00 2.78
2059 3217 0.606604 TCGTGGCTAGAGTGGAAACC 59.393 55.000 0.00 0.00 0.00 3.27
2060 3218 0.320374 CGTGGCTAGAGTGGAAACCA 59.680 55.000 0.00 0.00 0.00 3.67
2061 3219 1.270625 CGTGGCTAGAGTGGAAACCAA 60.271 52.381 0.00 0.00 34.18 3.67
2062 3220 2.615493 CGTGGCTAGAGTGGAAACCAAT 60.615 50.000 0.00 0.00 34.18 3.16
2063 3221 2.749621 GTGGCTAGAGTGGAAACCAATG 59.250 50.000 0.00 0.00 34.18 2.82
2064 3222 2.642311 TGGCTAGAGTGGAAACCAATGA 59.358 45.455 0.00 0.00 34.18 2.57
2065 3223 3.274288 GGCTAGAGTGGAAACCAATGAG 58.726 50.000 0.00 0.00 34.18 2.90
2066 3224 3.274288 GCTAGAGTGGAAACCAATGAGG 58.726 50.000 0.00 0.00 45.67 3.86
2086 3244 3.198489 GCTCAAGCAGGCGGTAGC 61.198 66.667 0.00 0.44 41.59 3.58
2096 3254 3.440415 GCGGTAGCCCTTTGTGCC 61.440 66.667 0.00 0.00 37.42 5.01
2097 3255 3.124921 CGGTAGCCCTTTGTGCCG 61.125 66.667 0.00 0.00 0.00 5.69
2098 3256 2.033602 GGTAGCCCTTTGTGCCGT 59.966 61.111 0.00 0.00 0.00 5.68
2099 3257 1.602605 GGTAGCCCTTTGTGCCGTT 60.603 57.895 0.00 0.00 0.00 4.44
2100 3258 1.176619 GGTAGCCCTTTGTGCCGTTT 61.177 55.000 0.00 0.00 0.00 3.60
2101 3259 0.039527 GTAGCCCTTTGTGCCGTTTG 60.040 55.000 0.00 0.00 0.00 2.93
2102 3260 0.466555 TAGCCCTTTGTGCCGTTTGT 60.467 50.000 0.00 0.00 0.00 2.83
2103 3261 1.299850 GCCCTTTGTGCCGTTTGTC 60.300 57.895 0.00 0.00 0.00 3.18
2104 3262 1.008995 CCCTTTGTGCCGTTTGTCG 60.009 57.895 0.00 0.00 39.52 4.35
2105 3263 1.440938 CCCTTTGTGCCGTTTGTCGA 61.441 55.000 0.00 0.00 42.86 4.20
2106 3264 0.591170 CCTTTGTGCCGTTTGTCGAT 59.409 50.000 0.00 0.00 42.86 3.59
2107 3265 1.662876 CCTTTGTGCCGTTTGTCGATG 60.663 52.381 0.00 0.00 42.86 3.84
2108 3266 1.002900 CTTTGTGCCGTTTGTCGATGT 60.003 47.619 0.00 0.00 42.86 3.06
2109 3267 1.867166 TTGTGCCGTTTGTCGATGTA 58.133 45.000 0.00 0.00 42.86 2.29
2110 3268 1.424403 TGTGCCGTTTGTCGATGTAG 58.576 50.000 0.00 0.00 42.86 2.74
2111 3269 0.094730 GTGCCGTTTGTCGATGTAGC 59.905 55.000 0.00 0.00 42.86 3.58
2112 3270 1.017177 TGCCGTTTGTCGATGTAGCC 61.017 55.000 0.00 0.00 42.86 3.93
2113 3271 1.995991 CCGTTTGTCGATGTAGCCG 59.004 57.895 0.00 0.00 42.86 5.52
2114 3272 0.457166 CCGTTTGTCGATGTAGCCGA 60.457 55.000 0.00 0.00 42.86 5.54
2115 3273 0.914551 CGTTTGTCGATGTAGCCGAG 59.085 55.000 0.00 0.00 42.86 4.63
2116 3274 1.466866 CGTTTGTCGATGTAGCCGAGA 60.467 52.381 0.00 0.00 42.86 4.04
2117 3275 2.186076 GTTTGTCGATGTAGCCGAGAG 58.814 52.381 0.00 0.00 36.66 3.20
2118 3276 0.100682 TTGTCGATGTAGCCGAGAGC 59.899 55.000 0.00 0.00 44.25 4.09
2128 3286 4.742201 CCGAGAGCGTGGGTGGTG 62.742 72.222 0.00 0.00 35.23 4.17
2129 3287 4.742201 CGAGAGCGTGGGTGGTGG 62.742 72.222 0.00 0.00 0.00 4.61
2130 3288 3.311110 GAGAGCGTGGGTGGTGGA 61.311 66.667 0.00 0.00 0.00 4.02
2131 3289 3.302347 GAGAGCGTGGGTGGTGGAG 62.302 68.421 0.00 0.00 0.00 3.86
2132 3290 3.626924 GAGCGTGGGTGGTGGAGT 61.627 66.667 0.00 0.00 0.00 3.85
2133 3291 3.591254 GAGCGTGGGTGGTGGAGTC 62.591 68.421 0.00 0.00 0.00 3.36
2135 3293 3.612681 CGTGGGTGGTGGAGTCGT 61.613 66.667 0.00 0.00 0.00 4.34
2136 3294 2.030562 GTGGGTGGTGGAGTCGTG 59.969 66.667 0.00 0.00 0.00 4.35
2137 3295 3.238497 TGGGTGGTGGAGTCGTGG 61.238 66.667 0.00 0.00 0.00 4.94
2138 3296 3.239253 GGGTGGTGGAGTCGTGGT 61.239 66.667 0.00 0.00 0.00 4.16
2139 3297 2.342648 GGTGGTGGAGTCGTGGTC 59.657 66.667 0.00 0.00 0.00 4.02
2140 3298 2.049433 GTGGTGGAGTCGTGGTCG 60.049 66.667 0.00 0.00 38.55 4.79
2141 3299 2.203379 TGGTGGAGTCGTGGTCGA 60.203 61.111 0.00 0.00 44.12 4.20
2142 3300 2.265904 TGGTGGAGTCGTGGTCGAG 61.266 63.158 0.00 0.00 46.96 4.04
2143 3301 2.567049 GTGGAGTCGTGGTCGAGG 59.433 66.667 0.00 0.00 46.96 4.63
2144 3302 2.114625 TGGAGTCGTGGTCGAGGT 59.885 61.111 0.00 0.00 46.96 3.85
2145 3303 0.957395 GTGGAGTCGTGGTCGAGGTA 60.957 60.000 0.00 0.00 46.96 3.08
2146 3304 0.675837 TGGAGTCGTGGTCGAGGTAG 60.676 60.000 0.00 0.00 46.96 3.18
2147 3305 1.428620 GAGTCGTGGTCGAGGTAGC 59.571 63.158 0.00 0.00 46.96 3.58
2148 3306 1.991099 GAGTCGTGGTCGAGGTAGCC 61.991 65.000 0.00 0.00 46.96 3.93
2149 3307 3.129502 TCGTGGTCGAGGTAGCCG 61.130 66.667 0.00 0.00 41.35 5.52
2150 3308 3.437795 CGTGGTCGAGGTAGCCGT 61.438 66.667 0.00 0.00 39.71 5.68
2151 3309 2.181021 GTGGTCGAGGTAGCCGTG 59.819 66.667 0.00 0.00 0.00 4.94
2152 3310 3.755628 TGGTCGAGGTAGCCGTGC 61.756 66.667 0.00 0.00 0.00 5.34
2153 3311 4.849329 GGTCGAGGTAGCCGTGCG 62.849 72.222 0.00 0.00 0.00 5.34
2154 3312 3.807538 GTCGAGGTAGCCGTGCGA 61.808 66.667 0.00 0.00 0.00 5.10
2155 3313 3.057548 TCGAGGTAGCCGTGCGAA 61.058 61.111 0.00 0.00 0.00 4.70
2156 3314 2.579787 CGAGGTAGCCGTGCGAAG 60.580 66.667 0.00 0.00 0.00 3.79
2157 3315 2.882876 GAGGTAGCCGTGCGAAGA 59.117 61.111 0.00 0.00 0.00 2.87
2158 3316 1.214589 GAGGTAGCCGTGCGAAGAA 59.785 57.895 0.00 0.00 0.00 2.52
2159 3317 0.179108 GAGGTAGCCGTGCGAAGAAT 60.179 55.000 0.00 0.00 0.00 2.40
2160 3318 0.460284 AGGTAGCCGTGCGAAGAATG 60.460 55.000 0.00 0.00 0.00 2.67
2161 3319 1.348594 GTAGCCGTGCGAAGAATGC 59.651 57.895 0.00 0.00 0.00 3.56
2162 3320 1.813753 TAGCCGTGCGAAGAATGCC 60.814 57.895 0.00 0.00 0.00 4.40
2163 3321 4.520846 GCCGTGCGAAGAATGCCG 62.521 66.667 0.00 0.00 0.00 5.69
2168 3326 4.223964 GCGAAGAATGCCGCGGTC 62.224 66.667 28.70 19.46 42.02 4.79
2169 3327 3.913573 CGAAGAATGCCGCGGTCG 61.914 66.667 28.70 22.39 0.00 4.79
2170 3328 2.508439 GAAGAATGCCGCGGTCGA 60.508 61.111 28.70 11.81 38.10 4.20
2171 3329 1.883084 GAAGAATGCCGCGGTCGAT 60.883 57.895 28.70 13.76 38.10 3.59
2172 3330 2.094126 GAAGAATGCCGCGGTCGATG 62.094 60.000 28.70 0.00 38.10 3.84
2173 3331 2.852495 AAGAATGCCGCGGTCGATGT 62.852 55.000 28.70 6.60 38.10 3.06
2174 3332 2.871427 GAATGCCGCGGTCGATGTC 61.871 63.158 28.70 11.93 38.10 3.06
2184 3342 2.045634 TCGATGTCGAGTCGGGGT 60.046 61.111 13.54 0.00 44.22 4.95
2185 3343 2.102357 CGATGTCGAGTCGGGGTG 59.898 66.667 13.54 0.00 43.02 4.61
2186 3344 2.494918 GATGTCGAGTCGGGGTGG 59.505 66.667 13.54 0.00 0.00 4.61
2187 3345 3.718210 GATGTCGAGTCGGGGTGGC 62.718 68.421 13.54 0.00 0.00 5.01
2200 3358 3.998672 GTGGCCGGTGTCGAGGAA 61.999 66.667 1.90 0.00 39.00 3.36
2201 3359 3.691342 TGGCCGGTGTCGAGGAAG 61.691 66.667 1.90 0.00 39.00 3.46
2202 3360 3.692406 GGCCGGTGTCGAGGAAGT 61.692 66.667 1.90 0.00 39.00 3.01
2203 3361 2.126031 GCCGGTGTCGAGGAAGTC 60.126 66.667 1.90 0.00 39.00 3.01
2204 3362 2.927580 GCCGGTGTCGAGGAAGTCA 61.928 63.158 1.90 0.00 39.00 3.41
2205 3363 1.080705 CCGGTGTCGAGGAAGTCAC 60.081 63.158 0.00 0.00 39.00 3.67
2206 3364 1.080705 CGGTGTCGAGGAAGTCACC 60.081 63.158 9.90 9.90 43.56 4.02
2207 3365 1.080705 GGTGTCGAGGAAGTCACCG 60.081 63.158 5.03 0.00 39.65 4.94
2208 3366 1.658673 GTGTCGAGGAAGTCACCGT 59.341 57.895 0.00 0.00 34.73 4.83
2209 3367 0.663568 GTGTCGAGGAAGTCACCGTG 60.664 60.000 0.00 0.00 34.73 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.555325 ACGTCGTGGTAATCTGTCAGAA 59.445 45.455 6.64 0.00 0.00 3.02
117 118 2.877691 GCTTAACGGGCAGGCTTG 59.122 61.111 0.00 0.00 0.00 4.01
131 132 3.302347 CTCCTCCGCTTGGTCGCTT 62.302 63.158 0.00 0.00 0.00 4.68
132 133 3.764466 CTCCTCCGCTTGGTCGCT 61.764 66.667 0.00 0.00 0.00 4.93
153 154 1.040646 TGGGCGAGGATGTGATCTAC 58.959 55.000 0.00 0.00 0.00 2.59
188 190 0.264955 ATGTCCGGGTCCATACCTCT 59.735 55.000 0.00 0.00 45.95 3.69
241 248 6.283694 CACTCTATAAGCCTTGTATCTGCAA 58.716 40.000 0.00 0.00 0.00 4.08
244 251 6.219473 CACCACTCTATAAGCCTTGTATCTG 58.781 44.000 0.00 0.00 0.00 2.90
310 317 5.635280 CACATCACAAGTAAGACGAGAACAT 59.365 40.000 0.00 0.00 0.00 2.71
313 320 4.556233 CCACATCACAAGTAAGACGAGAA 58.444 43.478 0.00 0.00 0.00 2.87
314 321 3.056821 CCCACATCACAAGTAAGACGAGA 60.057 47.826 0.00 0.00 0.00 4.04
321 328 8.642935 TTTCATAATTCCCACATCACAAGTAA 57.357 30.769 0.00 0.00 0.00 2.24
353 360 2.487762 ACCATCAAACACGATCGCATTT 59.512 40.909 16.60 12.99 0.00 2.32
381 388 3.769844 GAGAGTACCTCTTCCACCAATGA 59.230 47.826 0.00 0.00 41.35 2.57
385 392 1.616187 CGGAGAGTACCTCTTCCACCA 60.616 57.143 10.11 0.00 41.35 4.17
394 401 1.822990 TCGATTTTGCGGAGAGTACCT 59.177 47.619 0.00 0.00 0.00 3.08
399 406 1.432270 GGCCTCGATTTTGCGGAGAG 61.432 60.000 0.00 0.00 0.00 3.20
400 407 1.449601 GGCCTCGATTTTGCGGAGA 60.450 57.895 0.00 0.00 0.00 3.71
423 430 5.263599 TGCCTGTTGTTTTCCATGATCTAT 58.736 37.500 0.00 0.00 0.00 1.98
436 443 1.547372 GCCTTGATGATGCCTGTTGTT 59.453 47.619 0.00 0.00 0.00 2.83
440 447 1.452651 CCGCCTTGATGATGCCTGT 60.453 57.895 0.00 0.00 0.00 4.00
462 469 3.898482 AGAGCTCTAAAGAGACTCTCCC 58.102 50.000 16.50 1.18 44.49 4.30
470 477 3.181485 CCCACCGTTAGAGCTCTAAAGAG 60.181 52.174 36.18 29.14 44.75 2.85
499 506 1.008875 CACGCTGCTAACTTCTCGCA 61.009 55.000 0.00 0.00 0.00 5.10
581 590 3.716872 AGAAGAGAGAGAGAGAGGGGTAG 59.283 52.174 0.00 0.00 0.00 3.18
590 599 9.426837 GCGTACTTATTATAGAAGAGAGAGAGA 57.573 37.037 4.04 0.00 0.00 3.10
591 600 8.377681 CGCGTACTTATTATAGAAGAGAGAGAG 58.622 40.741 0.00 0.00 0.00 3.20
592 601 7.871973 ACGCGTACTTATTATAGAAGAGAGAGA 59.128 37.037 11.67 0.00 0.00 3.10
658 671 9.487790 AAATCTCTTCCGATCTGATAAAAGATC 57.512 33.333 4.45 4.45 46.14 2.75
659 672 9.844257 AAAATCTCTTCCGATCTGATAAAAGAT 57.156 29.630 8.43 0.00 39.66 2.40
660 673 9.102757 CAAAATCTCTTCCGATCTGATAAAAGA 57.897 33.333 0.00 0.06 0.00 2.52
661 674 8.341173 CCAAAATCTCTTCCGATCTGATAAAAG 58.659 37.037 0.00 0.00 0.00 2.27
662 675 7.829211 ACCAAAATCTCTTCCGATCTGATAAAA 59.171 33.333 0.00 0.00 0.00 1.52
663 676 7.280876 CACCAAAATCTCTTCCGATCTGATAAA 59.719 37.037 0.00 0.00 0.00 1.40
664 677 6.763135 CACCAAAATCTCTTCCGATCTGATAA 59.237 38.462 0.00 0.00 0.00 1.75
665 678 6.283694 CACCAAAATCTCTTCCGATCTGATA 58.716 40.000 0.00 0.00 0.00 2.15
666 679 5.121811 CACCAAAATCTCTTCCGATCTGAT 58.878 41.667 0.00 0.00 0.00 2.90
667 680 4.507710 CACCAAAATCTCTTCCGATCTGA 58.492 43.478 0.00 0.00 0.00 3.27
668 681 3.064545 GCACCAAAATCTCTTCCGATCTG 59.935 47.826 0.00 0.00 0.00 2.90
669 682 3.274288 GCACCAAAATCTCTTCCGATCT 58.726 45.455 0.00 0.00 0.00 2.75
670 683 2.030946 CGCACCAAAATCTCTTCCGATC 59.969 50.000 0.00 0.00 0.00 3.69
671 684 2.009774 CGCACCAAAATCTCTTCCGAT 58.990 47.619 0.00 0.00 0.00 4.18
672 685 1.270625 ACGCACCAAAATCTCTTCCGA 60.271 47.619 0.00 0.00 0.00 4.55
673 686 1.156736 ACGCACCAAAATCTCTTCCG 58.843 50.000 0.00 0.00 0.00 4.30
674 687 2.418976 GGTACGCACCAAAATCTCTTCC 59.581 50.000 0.00 0.00 45.04 3.46
675 688 3.741805 GGTACGCACCAAAATCTCTTC 57.258 47.619 0.00 0.00 45.04 2.87
752 765 0.798776 CTTTTGGCGAGCCTACACTG 59.201 55.000 15.75 0.00 36.94 3.66
760 773 1.431036 GGCTGATCTTTTGGCGAGC 59.569 57.895 0.00 0.00 0.00 5.03
761 774 1.379642 GGGGCTGATCTTTTGGCGAG 61.380 60.000 0.00 0.00 0.00 5.03
763 776 1.678635 TGGGGCTGATCTTTTGGCG 60.679 57.895 0.00 0.00 0.00 5.69
820 1856 2.478547 TGTTCGGCCTTTTCGTTTTC 57.521 45.000 0.00 0.00 0.00 2.29
821 1857 2.943449 TTGTTCGGCCTTTTCGTTTT 57.057 40.000 0.00 0.00 0.00 2.43
833 1869 0.730840 GGGCGGATAGTTTTGTTCGG 59.269 55.000 0.00 0.00 0.00 4.30
837 1873 1.078001 CGGGGGCGGATAGTTTTGT 60.078 57.895 0.00 0.00 0.00 2.83
851 1887 2.335712 GCAGTTTCCAGAAGCGGGG 61.336 63.158 0.00 0.00 0.00 5.73
877 1922 2.613482 GGAGGGAGGGGGTTGGTTC 61.613 68.421 0.00 0.00 0.00 3.62
921 1972 2.126888 CGGTGATGGCGTGTTTGC 60.127 61.111 0.00 0.00 0.00 3.68
956 2007 0.179037 TGCTGTCTGCTCTGCTTTGT 60.179 50.000 3.20 0.00 43.37 2.83
971 2022 1.892819 ATGTCGACCACCCTCTGCTG 61.893 60.000 14.12 0.00 0.00 4.41
972 2023 1.608717 GATGTCGACCACCCTCTGCT 61.609 60.000 14.12 0.00 0.00 4.24
975 2026 2.052690 CCGATGTCGACCACCCTCT 61.053 63.158 14.12 0.00 43.02 3.69
976 2027 1.392710 ATCCGATGTCGACCACCCTC 61.393 60.000 14.12 1.42 43.02 4.30
979 2030 1.299165 CGATCCGATGTCGACCACC 60.299 63.158 14.12 0.86 41.40 4.61
980 2031 1.299165 CCGATCCGATGTCGACCAC 60.299 63.158 14.12 6.06 41.40 4.16
981 2032 3.116463 CCGATCCGATGTCGACCA 58.884 61.111 14.12 1.26 41.40 4.02
1242 2299 1.001860 AGAAGCAGCCTCACTTGAGTC 59.998 52.381 5.53 0.00 40.48 3.36
1286 2355 0.810031 CTGACCGAGTTATTGGGCCG 60.810 60.000 0.00 0.00 37.14 6.13
1299 2368 2.670635 GCAGAGTACATGCTGACCG 58.329 57.895 14.02 0.00 40.59 4.79
1307 2376 3.937706 GCAACATCTCAAGCAGAGTACAT 59.062 43.478 6.15 0.00 44.98 2.29
1308 2377 3.007290 AGCAACATCTCAAGCAGAGTACA 59.993 43.478 6.15 0.00 44.98 2.90
1320 2396 1.610522 ACAACAGGCAAGCAACATCTC 59.389 47.619 0.00 0.00 0.00 2.75
1321 2397 1.696063 ACAACAGGCAAGCAACATCT 58.304 45.000 0.00 0.00 0.00 2.90
1328 2404 0.746659 AGGTCAAACAACAGGCAAGC 59.253 50.000 0.00 0.00 0.00 4.01
1354 2465 3.519579 CAGTTGAGCCATGACTGACTAG 58.480 50.000 5.74 0.00 42.54 2.57
1404 2522 3.689347 TGAAAGTGACAAGCTGGCATAT 58.311 40.909 0.00 0.00 37.93 1.78
1405 2523 3.076621 CTGAAAGTGACAAGCTGGCATA 58.923 45.455 0.00 0.00 37.93 3.14
1406 2524 1.884579 CTGAAAGTGACAAGCTGGCAT 59.115 47.619 0.00 0.00 37.93 4.40
1407 2525 1.134128 TCTGAAAGTGACAAGCTGGCA 60.134 47.619 0.00 0.00 29.15 4.92
1419 2537 7.043325 GCGAATCGAAATACTACATCTGAAAGT 60.043 37.037 6.91 0.00 33.76 2.66
1431 2549 6.523201 GTCAACAATTTGCGAATCGAAATACT 59.477 34.615 6.91 0.00 32.17 2.12
1432 2550 6.523201 AGTCAACAATTTGCGAATCGAAATAC 59.477 34.615 6.91 4.96 32.17 1.89
1433 2551 6.607689 AGTCAACAATTTGCGAATCGAAATA 58.392 32.000 6.91 0.00 32.17 1.40
1442 2560 3.129462 TGTTCCAAGTCAACAATTTGCGA 59.871 39.130 0.00 0.00 30.67 5.10
1447 2565 8.791327 AGAATTTTTGTTCCAAGTCAACAATT 57.209 26.923 0.00 0.00 42.04 2.32
1456 2574 7.166473 CGACTCTTTGAGAATTTTTGTTCCAAG 59.834 37.037 1.25 0.00 33.32 3.61
1472 2590 3.667497 AGCAGTTGATCGACTCTTTGA 57.333 42.857 13.01 0.00 0.00 2.69
1473 2591 4.489810 ACTAGCAGTTGATCGACTCTTTG 58.510 43.478 13.01 4.28 0.00 2.77
1552 2670 1.333619 CACAATCCCCTTTAATCGGCG 59.666 52.381 0.00 0.00 0.00 6.46
1638 2795 6.930722 CCAAACACTTGCCTTAATTCAATCTT 59.069 34.615 0.00 0.00 0.00 2.40
1644 2801 8.825667 TTATTTCCAAACACTTGCCTTAATTC 57.174 30.769 0.00 0.00 0.00 2.17
1717 2874 1.069636 CGTACTCGTACCGGGCTTATC 60.070 57.143 6.32 0.00 32.61 1.75
1723 2880 2.124736 TCCCGTACTCGTACCGGG 60.125 66.667 17.58 17.58 44.11 5.73
1751 2909 7.447545 ACATATAGATATGCGGATACACGGTAT 59.552 37.037 0.00 0.00 42.98 2.73
1761 2919 7.123383 TCCCTTCTAACATATAGATATGCGGA 58.877 38.462 9.05 3.50 42.98 5.54
1763 2921 8.226819 TCTCCCTTCTAACATATAGATATGCG 57.773 38.462 9.05 0.26 42.98 4.73
1776 2934 4.343814 CCAATCCTCTCTCTCCCTTCTAAC 59.656 50.000 0.00 0.00 0.00 2.34
1777 2935 4.016105 ACCAATCCTCTCTCTCCCTTCTAA 60.016 45.833 0.00 0.00 0.00 2.10
1778 2936 3.533907 ACCAATCCTCTCTCTCCCTTCTA 59.466 47.826 0.00 0.00 0.00 2.10
1779 2937 2.317594 ACCAATCCTCTCTCTCCCTTCT 59.682 50.000 0.00 0.00 0.00 2.85
1780 2938 2.433970 CACCAATCCTCTCTCTCCCTTC 59.566 54.545 0.00 0.00 0.00 3.46
1781 2939 2.476199 CACCAATCCTCTCTCTCCCTT 58.524 52.381 0.00 0.00 0.00 3.95
1782 2940 1.343884 CCACCAATCCTCTCTCTCCCT 60.344 57.143 0.00 0.00 0.00 4.20
1783 2941 1.127343 CCACCAATCCTCTCTCTCCC 58.873 60.000 0.00 0.00 0.00 4.30
1784 2942 2.166907 TCCACCAATCCTCTCTCTCC 57.833 55.000 0.00 0.00 0.00 3.71
1785 2943 4.898861 ACTATTCCACCAATCCTCTCTCTC 59.101 45.833 0.00 0.00 0.00 3.20
1786 2944 4.889780 ACTATTCCACCAATCCTCTCTCT 58.110 43.478 0.00 0.00 0.00 3.10
1787 2945 5.104735 ACAACTATTCCACCAATCCTCTCTC 60.105 44.000 0.00 0.00 0.00 3.20
1788 2946 4.785376 ACAACTATTCCACCAATCCTCTCT 59.215 41.667 0.00 0.00 0.00 3.10
1789 2947 5.104259 ACAACTATTCCACCAATCCTCTC 57.896 43.478 0.00 0.00 0.00 3.20
1790 2948 5.222130 ACAACAACTATTCCACCAATCCTCT 60.222 40.000 0.00 0.00 0.00 3.69
1791 2949 5.010282 ACAACAACTATTCCACCAATCCTC 58.990 41.667 0.00 0.00 0.00 3.71
1792 2950 4.998051 ACAACAACTATTCCACCAATCCT 58.002 39.130 0.00 0.00 0.00 3.24
1793 2951 7.257722 CAATACAACAACTATTCCACCAATCC 58.742 38.462 0.00 0.00 0.00 3.01
1794 2952 6.751888 GCAATACAACAACTATTCCACCAATC 59.248 38.462 0.00 0.00 0.00 2.67
1795 2953 6.437162 AGCAATACAACAACTATTCCACCAAT 59.563 34.615 0.00 0.00 0.00 3.16
1796 2954 5.772672 AGCAATACAACAACTATTCCACCAA 59.227 36.000 0.00 0.00 0.00 3.67
1797 2955 5.321102 AGCAATACAACAACTATTCCACCA 58.679 37.500 0.00 0.00 0.00 4.17
1798 2956 5.897377 AGCAATACAACAACTATTCCACC 57.103 39.130 0.00 0.00 0.00 4.61
1799 2957 6.908825 TCAAGCAATACAACAACTATTCCAC 58.091 36.000 0.00 0.00 0.00 4.02
1800 2958 6.349280 GCTCAAGCAATACAACAACTATTCCA 60.349 38.462 0.00 0.00 41.59 3.53
1801 2959 6.030228 GCTCAAGCAATACAACAACTATTCC 58.970 40.000 0.00 0.00 41.59 3.01
1802 2960 6.030228 GGCTCAAGCAATACAACAACTATTC 58.970 40.000 4.13 0.00 44.36 1.75
1803 2961 5.711976 AGGCTCAAGCAATACAACAACTATT 59.288 36.000 4.13 0.00 44.36 1.73
1804 2962 5.256474 AGGCTCAAGCAATACAACAACTAT 58.744 37.500 4.13 0.00 44.36 2.12
1805 2963 4.651778 AGGCTCAAGCAATACAACAACTA 58.348 39.130 4.13 0.00 44.36 2.24
1806 2964 3.490348 AGGCTCAAGCAATACAACAACT 58.510 40.909 4.13 0.00 44.36 3.16
1807 2965 3.667960 CGAGGCTCAAGCAATACAACAAC 60.668 47.826 15.95 0.00 44.36 3.32
1808 2966 2.483877 CGAGGCTCAAGCAATACAACAA 59.516 45.455 15.95 0.00 44.36 2.83
1809 2967 2.076100 CGAGGCTCAAGCAATACAACA 58.924 47.619 15.95 0.00 44.36 3.33
1810 2968 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
1811 2969 2.472695 ACGAGGCTCAAGCAATACAA 57.527 45.000 15.95 0.00 44.36 2.41
1812 2970 2.076100 CAACGAGGCTCAAGCAATACA 58.924 47.619 15.95 0.00 44.36 2.29
1813 2971 1.398390 CCAACGAGGCTCAAGCAATAC 59.602 52.381 15.95 0.00 44.36 1.89
1814 2972 1.737838 CCAACGAGGCTCAAGCAATA 58.262 50.000 15.95 0.00 44.36 1.90
1815 2973 2.559785 CCAACGAGGCTCAAGCAAT 58.440 52.632 15.95 0.00 44.36 3.56
1816 2974 4.063529 CCAACGAGGCTCAAGCAA 57.936 55.556 15.95 0.00 44.36 3.91
1825 2983 6.716934 ACTCCTATATATATGCCAACGAGG 57.283 41.667 5.44 2.71 41.84 4.63
1826 2984 8.221965 TGTACTCCTATATATATGCCAACGAG 57.778 38.462 5.44 4.01 0.00 4.18
1827 2985 8.630037 CATGTACTCCTATATATATGCCAACGA 58.370 37.037 5.44 0.00 0.00 3.85
1828 2986 8.630037 TCATGTACTCCTATATATATGCCAACG 58.370 37.037 5.44 0.00 0.00 4.10
1839 2997 9.693739 CTCCAAGTAGATCATGTACTCCTATAT 57.306 37.037 0.00 0.00 30.11 0.86
1840 2998 8.670490 ACTCCAAGTAGATCATGTACTCCTATA 58.330 37.037 0.00 0.00 30.11 1.31
1841 2999 7.531317 ACTCCAAGTAGATCATGTACTCCTAT 58.469 38.462 0.00 0.00 30.11 2.57
1842 3000 6.912426 ACTCCAAGTAGATCATGTACTCCTA 58.088 40.000 0.00 0.00 30.11 2.94
1843 3001 5.772004 ACTCCAAGTAGATCATGTACTCCT 58.228 41.667 0.00 0.00 30.11 3.69
1844 3002 6.546403 TGTACTCCAAGTAGATCATGTACTCC 59.454 42.308 0.00 0.00 30.12 3.85
1845 3003 7.569639 TGTACTCCAAGTAGATCATGTACTC 57.430 40.000 0.00 0.00 30.12 2.59
1846 3004 7.956328 TTGTACTCCAAGTAGATCATGTACT 57.044 36.000 0.00 0.00 30.12 2.73
1860 3018 0.476338 TGGCTTGGCTTGTACTCCAA 59.524 50.000 12.11 12.11 39.81 3.53
1861 3019 0.036732 CTGGCTTGGCTTGTACTCCA 59.963 55.000 0.00 0.00 0.00 3.86
1862 3020 0.324943 TCTGGCTTGGCTTGTACTCC 59.675 55.000 0.00 0.00 0.00 3.85
1863 3021 2.185004 TTCTGGCTTGGCTTGTACTC 57.815 50.000 0.00 0.00 0.00 2.59
1864 3022 2.887151 ATTCTGGCTTGGCTTGTACT 57.113 45.000 0.00 0.00 0.00 2.73
1865 3023 5.450550 GGAAATATTCTGGCTTGGCTTGTAC 60.451 44.000 0.00 0.00 0.00 2.90
1866 3024 4.644685 GGAAATATTCTGGCTTGGCTTGTA 59.355 41.667 0.00 0.00 0.00 2.41
1867 3025 3.448660 GGAAATATTCTGGCTTGGCTTGT 59.551 43.478 0.00 0.00 0.00 3.16
1868 3026 3.703052 AGGAAATATTCTGGCTTGGCTTG 59.297 43.478 0.00 0.00 0.00 4.01
1869 3027 3.986435 AGGAAATATTCTGGCTTGGCTT 58.014 40.909 0.00 0.00 0.00 4.35
1870 3028 3.677156 AGGAAATATTCTGGCTTGGCT 57.323 42.857 0.00 0.00 0.00 4.75
1871 3029 4.464947 ACTAGGAAATATTCTGGCTTGGC 58.535 43.478 0.00 0.00 0.00 4.52
1872 3030 5.934781 AGACTAGGAAATATTCTGGCTTGG 58.065 41.667 0.00 0.00 0.00 3.61
1873 3031 7.442666 GGTTAGACTAGGAAATATTCTGGCTTG 59.557 40.741 0.00 0.00 0.00 4.01
1874 3032 7.348537 AGGTTAGACTAGGAAATATTCTGGCTT 59.651 37.037 0.00 0.00 0.00 4.35
1875 3033 6.847036 AGGTTAGACTAGGAAATATTCTGGCT 59.153 38.462 0.00 0.00 0.00 4.75
1876 3034 7.068686 AGGTTAGACTAGGAAATATTCTGGC 57.931 40.000 0.00 0.00 0.00 4.85
1883 3041 9.725206 AGGAAACATAGGTTAGACTAGGAAATA 57.275 33.333 0.00 0.00 35.82 1.40
1884 3042 8.625467 AGGAAACATAGGTTAGACTAGGAAAT 57.375 34.615 0.00 0.00 35.82 2.17
1885 3043 9.551339 TTAGGAAACATAGGTTAGACTAGGAAA 57.449 33.333 0.00 0.00 35.82 3.13
1886 3044 9.725206 ATTAGGAAACATAGGTTAGACTAGGAA 57.275 33.333 0.00 0.00 35.82 3.36
1896 3054 9.920946 ATGTGATTGTATTAGGAAACATAGGTT 57.079 29.630 0.00 0.00 39.43 3.50
1897 3055 9.920946 AATGTGATTGTATTAGGAAACATAGGT 57.079 29.630 0.00 0.00 0.00 3.08
1910 3068 8.641541 GGGGATGTTGAATAATGTGATTGTATT 58.358 33.333 0.00 0.00 0.00 1.89
1911 3069 7.233348 GGGGGATGTTGAATAATGTGATTGTAT 59.767 37.037 0.00 0.00 0.00 2.29
1912 3070 6.549364 GGGGGATGTTGAATAATGTGATTGTA 59.451 38.462 0.00 0.00 0.00 2.41
1913 3071 5.363580 GGGGGATGTTGAATAATGTGATTGT 59.636 40.000 0.00 0.00 0.00 2.71
1914 3072 5.846203 GGGGGATGTTGAATAATGTGATTG 58.154 41.667 0.00 0.00 0.00 2.67
1938 3096 1.218875 TTGCTACCGTTGTGACTGCG 61.219 55.000 0.00 0.00 0.00 5.18
1939 3097 1.135972 CATTGCTACCGTTGTGACTGC 60.136 52.381 0.00 0.00 0.00 4.40
1940 3098 1.135972 GCATTGCTACCGTTGTGACTG 60.136 52.381 0.16 0.00 0.00 3.51
1941 3099 1.156736 GCATTGCTACCGTTGTGACT 58.843 50.000 0.16 0.00 0.00 3.41
1942 3100 0.871722 TGCATTGCTACCGTTGTGAC 59.128 50.000 10.49 0.00 0.00 3.67
1943 3101 1.155889 CTGCATTGCTACCGTTGTGA 58.844 50.000 10.49 0.00 0.00 3.58
1944 3102 1.135972 GTCTGCATTGCTACCGTTGTG 60.136 52.381 10.49 0.00 0.00 3.33
1945 3103 1.156736 GTCTGCATTGCTACCGTTGT 58.843 50.000 10.49 0.00 0.00 3.32
1946 3104 0.447801 GGTCTGCATTGCTACCGTTG 59.552 55.000 15.04 0.00 0.00 4.10
1947 3105 1.019278 CGGTCTGCATTGCTACCGTT 61.019 55.000 30.99 0.00 45.91 4.44
1948 3106 1.447838 CGGTCTGCATTGCTACCGT 60.448 57.895 30.99 0.00 45.91 4.83
1949 3107 3.398920 CGGTCTGCATTGCTACCG 58.601 61.111 28.77 28.77 45.85 4.02
1950 3108 0.391130 TCACGGTCTGCATTGCTACC 60.391 55.000 18.37 18.37 33.92 3.18
1951 3109 1.002366 CTCACGGTCTGCATTGCTAC 58.998 55.000 10.49 8.04 0.00 3.58
1952 3110 0.894835 TCTCACGGTCTGCATTGCTA 59.105 50.000 10.49 0.00 0.00 3.49
1953 3111 0.671781 GTCTCACGGTCTGCATTGCT 60.672 55.000 10.49 0.00 0.00 3.91
1954 3112 0.671781 AGTCTCACGGTCTGCATTGC 60.672 55.000 0.46 0.46 0.00 3.56
1955 3113 1.073964 CAGTCTCACGGTCTGCATTG 58.926 55.000 0.00 0.00 0.00 2.82
1956 3114 0.969149 TCAGTCTCACGGTCTGCATT 59.031 50.000 0.00 0.00 0.00 3.56
1957 3115 0.969149 TTCAGTCTCACGGTCTGCAT 59.031 50.000 0.00 0.00 0.00 3.96
1958 3116 0.315251 CTTCAGTCTCACGGTCTGCA 59.685 55.000 0.00 0.00 0.00 4.41
1959 3117 0.598562 TCTTCAGTCTCACGGTCTGC 59.401 55.000 0.00 0.00 0.00 4.26
1960 3118 2.554462 TCTTCTTCAGTCTCACGGTCTG 59.446 50.000 0.00 0.00 0.00 3.51
1961 3119 2.865079 TCTTCTTCAGTCTCACGGTCT 58.135 47.619 0.00 0.00 0.00 3.85
1962 3120 3.644884 TTCTTCTTCAGTCTCACGGTC 57.355 47.619 0.00 0.00 0.00 4.79
1963 3121 4.608948 AATTCTTCTTCAGTCTCACGGT 57.391 40.909 0.00 0.00 0.00 4.83
1964 3122 4.991056 TCAAATTCTTCTTCAGTCTCACGG 59.009 41.667 0.00 0.00 0.00 4.94
1965 3123 6.347240 CCTTCAAATTCTTCTTCAGTCTCACG 60.347 42.308 0.00 0.00 0.00 4.35
1966 3124 6.567511 GCCTTCAAATTCTTCTTCAGTCTCAC 60.568 42.308 0.00 0.00 0.00 3.51
1967 3125 5.471456 GCCTTCAAATTCTTCTTCAGTCTCA 59.529 40.000 0.00 0.00 0.00 3.27
1968 3126 5.471456 TGCCTTCAAATTCTTCTTCAGTCTC 59.529 40.000 0.00 0.00 0.00 3.36
1969 3127 5.380043 TGCCTTCAAATTCTTCTTCAGTCT 58.620 37.500 0.00 0.00 0.00 3.24
1970 3128 5.695851 TGCCTTCAAATTCTTCTTCAGTC 57.304 39.130 0.00 0.00 0.00 3.51
1971 3129 5.508657 GCTTGCCTTCAAATTCTTCTTCAGT 60.509 40.000 0.00 0.00 0.00 3.41
1972 3130 4.922103 GCTTGCCTTCAAATTCTTCTTCAG 59.078 41.667 0.00 0.00 0.00 3.02
1973 3131 4.262164 GGCTTGCCTTCAAATTCTTCTTCA 60.262 41.667 4.11 0.00 0.00 3.02
1974 3132 4.240888 GGCTTGCCTTCAAATTCTTCTTC 58.759 43.478 4.11 0.00 0.00 2.87
1975 3133 3.305608 CGGCTTGCCTTCAAATTCTTCTT 60.306 43.478 10.12 0.00 0.00 2.52
1976 3134 2.229784 CGGCTTGCCTTCAAATTCTTCT 59.770 45.455 10.12 0.00 0.00 2.85
1977 3135 2.228822 TCGGCTTGCCTTCAAATTCTTC 59.771 45.455 10.12 0.00 0.00 2.87
1978 3136 2.029918 GTCGGCTTGCCTTCAAATTCTT 60.030 45.455 10.12 0.00 0.00 2.52
1979 3137 1.541588 GTCGGCTTGCCTTCAAATTCT 59.458 47.619 10.12 0.00 0.00 2.40
1980 3138 1.729149 CGTCGGCTTGCCTTCAAATTC 60.729 52.381 10.12 0.00 0.00 2.17
1981 3139 0.240945 CGTCGGCTTGCCTTCAAATT 59.759 50.000 10.12 0.00 0.00 1.82
1982 3140 1.586154 CCGTCGGCTTGCCTTCAAAT 61.586 55.000 10.12 0.00 0.00 2.32
1983 3141 2.258013 CCGTCGGCTTGCCTTCAAA 61.258 57.895 10.12 0.00 0.00 2.69
1984 3142 2.668212 CCGTCGGCTTGCCTTCAA 60.668 61.111 10.12 0.00 0.00 2.69
1985 3143 3.621805 TCCGTCGGCTTGCCTTCA 61.622 61.111 6.34 0.00 0.00 3.02
1986 3144 3.119096 GTCCGTCGGCTTGCCTTC 61.119 66.667 6.34 1.98 0.00 3.46
1987 3145 3.936203 TGTCCGTCGGCTTGCCTT 61.936 61.111 6.34 0.00 0.00 4.35
1988 3146 4.681978 GTGTCCGTCGGCTTGCCT 62.682 66.667 6.34 0.00 0.00 4.75
1991 3149 3.934391 GAGGGTGTCCGTCGGCTTG 62.934 68.421 6.34 0.00 38.33 4.01
1992 3150 3.692406 GAGGGTGTCCGTCGGCTT 61.692 66.667 6.34 0.00 38.33 4.35
2001 3159 2.410939 GTTACGACTTTGGAGGGTGTC 58.589 52.381 0.00 0.00 0.00 3.67
2002 3160 1.269936 CGTTACGACTTTGGAGGGTGT 60.270 52.381 0.00 0.00 0.00 4.16
2003 3161 1.425412 CGTTACGACTTTGGAGGGTG 58.575 55.000 0.00 0.00 0.00 4.61
2004 3162 0.319405 CCGTTACGACTTTGGAGGGT 59.681 55.000 6.24 0.00 0.00 4.34
2005 3163 0.319405 ACCGTTACGACTTTGGAGGG 59.681 55.000 6.24 0.00 0.00 4.30
2006 3164 1.706443 GACCGTTACGACTTTGGAGG 58.294 55.000 6.24 0.00 0.00 4.30
2007 3165 1.069022 TCGACCGTTACGACTTTGGAG 60.069 52.381 6.24 0.00 34.85 3.86
2008 3166 0.950836 TCGACCGTTACGACTTTGGA 59.049 50.000 6.24 0.00 34.85 3.53
2009 3167 3.477504 TCGACCGTTACGACTTTGG 57.522 52.632 6.24 0.00 34.85 3.28
2015 3173 1.226101 GATGCGTCGACCGTTACGA 60.226 57.895 10.58 0.00 41.55 3.43
2016 3174 1.512522 TGATGCGTCGACCGTTACG 60.513 57.895 10.58 0.00 41.92 3.18
2017 3175 1.726845 CGTGATGCGTCGACCGTTAC 61.727 60.000 10.58 9.95 39.32 2.50
2018 3176 1.512522 CGTGATGCGTCGACCGTTA 60.513 57.895 10.58 0.00 39.32 3.18
2019 3177 2.803670 CGTGATGCGTCGACCGTT 60.804 61.111 10.58 0.00 39.32 4.44
2020 3178 4.771356 CCGTGATGCGTCGACCGT 62.771 66.667 10.58 4.15 39.32 4.83
2021 3179 4.470170 TCCGTGATGCGTCGACCG 62.470 66.667 10.58 6.32 39.32 4.79
2022 3180 2.579787 CTCCGTGATGCGTCGACC 60.580 66.667 10.58 3.43 39.32 4.79
2023 3181 1.868251 GACTCCGTGATGCGTCGAC 60.868 63.158 5.18 5.18 39.32 4.20
2024 3182 2.483745 GACTCCGTGATGCGTCGA 59.516 61.111 0.58 0.00 39.32 4.20
2025 3183 2.944557 CGACTCCGTGATGCGTCG 60.945 66.667 0.58 0.00 42.39 5.12
2035 3193 1.429825 CACTCTAGCCACGACTCCG 59.570 63.158 0.00 0.00 42.50 4.63
2036 3194 0.680280 TCCACTCTAGCCACGACTCC 60.680 60.000 0.00 0.00 0.00 3.85
2037 3195 1.174783 TTCCACTCTAGCCACGACTC 58.825 55.000 0.00 0.00 0.00 3.36
2038 3196 1.272769 GTTTCCACTCTAGCCACGACT 59.727 52.381 0.00 0.00 0.00 4.18
2039 3197 1.672145 GGTTTCCACTCTAGCCACGAC 60.672 57.143 0.00 0.00 0.00 4.34
2040 3198 0.606604 GGTTTCCACTCTAGCCACGA 59.393 55.000 0.00 0.00 0.00 4.35
2041 3199 0.320374 TGGTTTCCACTCTAGCCACG 59.680 55.000 0.00 0.00 0.00 4.94
2042 3200 2.561478 TTGGTTTCCACTCTAGCCAC 57.439 50.000 0.00 0.00 30.78 5.01
2043 3201 2.642311 TCATTGGTTTCCACTCTAGCCA 59.358 45.455 0.00 0.00 30.78 4.75
2044 3202 3.274288 CTCATTGGTTTCCACTCTAGCC 58.726 50.000 0.00 0.00 30.78 3.93
2045 3203 3.274288 CCTCATTGGTTTCCACTCTAGC 58.726 50.000 0.00 0.00 30.78 3.42
2069 3227 3.198489 GCTACCGCCTGCTTGAGC 61.198 66.667 0.00 0.00 42.50 4.26
2079 3237 3.440415 GGCACAAAGGGCTACCGC 61.440 66.667 0.00 0.00 43.47 5.68
2080 3238 3.124921 CGGCACAAAGGGCTACCG 61.125 66.667 0.00 0.00 43.47 4.02
2081 3239 1.176619 AAACGGCACAAAGGGCTACC 61.177 55.000 0.00 0.00 0.00 3.18
2082 3240 0.039527 CAAACGGCACAAAGGGCTAC 60.040 55.000 0.00 0.00 0.00 3.58
2083 3241 0.466555 ACAAACGGCACAAAGGGCTA 60.467 50.000 0.00 0.00 0.00 3.93
2084 3242 1.734388 GACAAACGGCACAAAGGGCT 61.734 55.000 0.00 0.00 0.00 5.19
2085 3243 1.299850 GACAAACGGCACAAAGGGC 60.300 57.895 0.00 0.00 0.00 5.19
2086 3244 1.008995 CGACAAACGGCACAAAGGG 60.009 57.895 0.00 0.00 38.46 3.95
2087 3245 0.591170 ATCGACAAACGGCACAAAGG 59.409 50.000 0.00 0.00 42.82 3.11
2088 3246 1.002900 ACATCGACAAACGGCACAAAG 60.003 47.619 0.00 0.00 42.82 2.77
2089 3247 1.018148 ACATCGACAAACGGCACAAA 58.982 45.000 0.00 0.00 42.82 2.83
2090 3248 1.795872 CTACATCGACAAACGGCACAA 59.204 47.619 0.00 0.00 42.82 3.33
2091 3249 1.424403 CTACATCGACAAACGGCACA 58.576 50.000 0.00 0.00 42.82 4.57
2092 3250 0.094730 GCTACATCGACAAACGGCAC 59.905 55.000 0.00 0.00 42.82 5.01
2093 3251 1.017177 GGCTACATCGACAAACGGCA 61.017 55.000 0.00 0.00 42.82 5.69
2094 3252 1.713830 GGCTACATCGACAAACGGC 59.286 57.895 0.00 0.00 42.82 5.68
2095 3253 0.457166 TCGGCTACATCGACAAACGG 60.457 55.000 0.00 0.00 42.82 4.44
2096 3254 0.914551 CTCGGCTACATCGACAAACG 59.085 55.000 0.00 0.00 44.09 3.60
2097 3255 2.186076 CTCTCGGCTACATCGACAAAC 58.814 52.381 0.00 0.00 32.86 2.93
2098 3256 1.469251 GCTCTCGGCTACATCGACAAA 60.469 52.381 0.00 0.00 38.06 2.83
2099 3257 0.100682 GCTCTCGGCTACATCGACAA 59.899 55.000 0.00 0.00 38.06 3.18
2100 3258 1.728069 GCTCTCGGCTACATCGACA 59.272 57.895 0.00 0.00 38.06 4.35
2101 3259 1.369448 CGCTCTCGGCTACATCGAC 60.369 63.158 0.00 0.00 39.13 4.20
2102 3260 1.818363 ACGCTCTCGGCTACATCGA 60.818 57.895 0.00 0.00 40.69 3.59
2103 3261 1.655654 CACGCTCTCGGCTACATCG 60.656 63.158 0.00 0.00 40.69 3.84
2104 3262 1.299468 CCACGCTCTCGGCTACATC 60.299 63.158 0.00 0.00 40.69 3.06
2105 3263 2.786495 CCCACGCTCTCGGCTACAT 61.786 63.158 0.00 0.00 40.69 2.29
2106 3264 3.449227 CCCACGCTCTCGGCTACA 61.449 66.667 0.00 0.00 40.69 2.74
2107 3265 3.450115 ACCCACGCTCTCGGCTAC 61.450 66.667 0.00 0.00 40.69 3.58
2108 3266 3.449227 CACCCACGCTCTCGGCTA 61.449 66.667 0.00 0.00 40.69 3.93
2111 3269 4.742201 CACCACCCACGCTCTCGG 62.742 72.222 0.00 0.00 40.69 4.63
2112 3270 4.742201 CCACCACCCACGCTCTCG 62.742 72.222 0.00 0.00 42.43 4.04
2113 3271 3.302347 CTCCACCACCCACGCTCTC 62.302 68.421 0.00 0.00 0.00 3.20
2114 3272 3.314331 CTCCACCACCCACGCTCT 61.314 66.667 0.00 0.00 0.00 4.09
2115 3273 3.591254 GACTCCACCACCCACGCTC 62.591 68.421 0.00 0.00 0.00 5.03
2116 3274 3.626924 GACTCCACCACCCACGCT 61.627 66.667 0.00 0.00 0.00 5.07
2118 3276 3.612681 ACGACTCCACCACCCACG 61.613 66.667 0.00 0.00 0.00 4.94
2119 3277 2.030562 CACGACTCCACCACCCAC 59.969 66.667 0.00 0.00 0.00 4.61
2120 3278 3.238497 CCACGACTCCACCACCCA 61.238 66.667 0.00 0.00 0.00 4.51
2121 3279 3.236003 GACCACGACTCCACCACCC 62.236 68.421 0.00 0.00 0.00 4.61
2122 3280 2.342648 GACCACGACTCCACCACC 59.657 66.667 0.00 0.00 0.00 4.61
2123 3281 2.049433 CGACCACGACTCCACCAC 60.049 66.667 0.00 0.00 42.66 4.16
2124 3282 2.203379 TCGACCACGACTCCACCA 60.203 61.111 0.00 0.00 43.81 4.17
2125 3283 2.567049 CTCGACCACGACTCCACC 59.433 66.667 0.00 0.00 43.81 4.61
2126 3284 0.957395 TACCTCGACCACGACTCCAC 60.957 60.000 0.00 0.00 43.81 4.02
2127 3285 0.675837 CTACCTCGACCACGACTCCA 60.676 60.000 0.00 0.00 43.81 3.86
2128 3286 1.991099 GCTACCTCGACCACGACTCC 61.991 65.000 0.00 0.00 43.81 3.85
2129 3287 1.428620 GCTACCTCGACCACGACTC 59.571 63.158 0.00 0.00 43.81 3.36
2130 3288 2.045131 GGCTACCTCGACCACGACT 61.045 63.158 0.00 0.00 43.81 4.18
2131 3289 2.488820 GGCTACCTCGACCACGAC 59.511 66.667 0.00 0.00 43.81 4.34
2132 3290 3.129502 CGGCTACCTCGACCACGA 61.130 66.667 0.00 0.00 46.56 4.35
2133 3291 3.437795 ACGGCTACCTCGACCACG 61.438 66.667 0.00 0.00 41.26 4.94
2134 3292 2.181021 CACGGCTACCTCGACCAC 59.819 66.667 0.00 0.00 0.00 4.16
2135 3293 3.755628 GCACGGCTACCTCGACCA 61.756 66.667 0.00 0.00 0.00 4.02
2136 3294 4.849329 CGCACGGCTACCTCGACC 62.849 72.222 0.00 0.00 0.00 4.79
2137 3295 3.332493 TTCGCACGGCTACCTCGAC 62.332 63.158 0.00 0.00 0.00 4.20
2138 3296 3.047718 CTTCGCACGGCTACCTCGA 62.048 63.158 0.00 0.00 0.00 4.04
2139 3297 2.537792 TTCTTCGCACGGCTACCTCG 62.538 60.000 0.00 0.00 0.00 4.63
2140 3298 0.179108 ATTCTTCGCACGGCTACCTC 60.179 55.000 0.00 0.00 0.00 3.85
2141 3299 0.460284 CATTCTTCGCACGGCTACCT 60.460 55.000 0.00 0.00 0.00 3.08
2142 3300 2.006772 CATTCTTCGCACGGCTACC 58.993 57.895 0.00 0.00 0.00 3.18
2143 3301 1.348594 GCATTCTTCGCACGGCTAC 59.651 57.895 0.00 0.00 0.00 3.58
2144 3302 1.813753 GGCATTCTTCGCACGGCTA 60.814 57.895 0.00 0.00 0.00 3.93
2145 3303 3.127533 GGCATTCTTCGCACGGCT 61.128 61.111 0.00 0.00 0.00 5.52
2146 3304 4.520846 CGGCATTCTTCGCACGGC 62.521 66.667 0.00 0.00 0.00 5.68
2152 3310 3.913573 CGACCGCGGCATTCTTCG 61.914 66.667 28.58 22.08 0.00 3.79
2153 3311 1.883084 ATCGACCGCGGCATTCTTC 60.883 57.895 28.58 13.53 38.28 2.87
2154 3312 2.173669 CATCGACCGCGGCATTCTT 61.174 57.895 28.58 3.50 38.28 2.52
2155 3313 2.586079 CATCGACCGCGGCATTCT 60.586 61.111 28.58 4.48 38.28 2.40
2156 3314 2.871427 GACATCGACCGCGGCATTC 61.871 63.158 28.58 15.22 38.28 2.67
2157 3315 2.890474 GACATCGACCGCGGCATT 60.890 61.111 28.58 5.49 38.28 3.56
2161 3319 4.175489 ACTCGACATCGACCGCGG 62.175 66.667 26.86 26.86 44.22 6.46
2162 3320 2.648102 GACTCGACATCGACCGCG 60.648 66.667 0.00 0.00 44.22 6.46
2163 3321 2.648102 CGACTCGACATCGACCGC 60.648 66.667 8.33 0.00 44.22 5.68
2164 3322 2.022902 CCGACTCGACATCGACCG 59.977 66.667 14.38 7.06 44.22 4.79
2165 3323 2.408022 CCCGACTCGACATCGACC 59.592 66.667 14.38 0.00 44.22 4.79
2166 3324 2.404995 ACCCCGACTCGACATCGAC 61.405 63.158 14.38 0.00 44.22 4.20
2168 3326 2.102357 CACCCCGACTCGACATCG 59.898 66.667 0.00 7.25 39.33 3.84
2169 3327 2.494918 CCACCCCGACTCGACATC 59.505 66.667 0.00 0.00 0.00 3.06
2170 3328 3.771160 GCCACCCCGACTCGACAT 61.771 66.667 0.00 0.00 0.00 3.06
2183 3341 3.934391 CTTCCTCGACACCGGCCAC 62.934 68.421 0.00 0.00 36.24 5.01
2184 3342 3.691342 CTTCCTCGACACCGGCCA 61.691 66.667 0.00 0.00 36.24 5.36
2185 3343 3.644399 GACTTCCTCGACACCGGCC 62.644 68.421 0.00 0.00 36.24 6.13
2186 3344 2.126031 GACTTCCTCGACACCGGC 60.126 66.667 0.00 0.00 36.24 6.13
2187 3345 1.080705 GTGACTTCCTCGACACCGG 60.081 63.158 0.00 0.00 36.24 5.28
2188 3346 1.080705 GGTGACTTCCTCGACACCG 60.081 63.158 5.03 0.00 42.20 4.94
2189 3347 1.080705 CGGTGACTTCCTCGACACC 60.081 63.158 9.90 9.90 46.16 4.16
2190 3348 0.663568 CACGGTGACTTCCTCGACAC 60.664 60.000 0.74 0.00 0.00 3.67
2191 3349 1.658114 CACGGTGACTTCCTCGACA 59.342 57.895 0.74 0.00 0.00 4.35
2192 3350 4.554163 CACGGTGACTTCCTCGAC 57.446 61.111 0.74 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.