>input_sequence_86887
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--------------------------------------------------ATGATCCTCGTGGCGGTCATGGCGGAGCTG
CTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGGCGCCGCTGCGCATCCTGCCGCGCCG
CGTGCGGTTCGTCGTCCTCCGCACCCTCCCCTTCGCCTCCCCCTCGCCGCCCGTGCCGCCGCC------GCCCCCGCACG
CCGTCCCCGTTCTGCTCGCGCGCTGA------------------------------------------------------
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>chr3B_1_TraesCS3B01G488600
GCACAATTCACGTGGAAGCCCAGGGCGCCGCTGAGAAGCAGGTTTTTTGCATGGCTCGCCCTACGTAACAGATGCTGGAC
TTCTGACAGATTACCACGACGTGGACTAGACCACCAGCAAGCCTGCCCGTTAAGCGACCAAGCGGAGGAGACCGTAGATC
ACATCCTCGCCCAATGTGTCTTT-GCAAGAGAGGTATGG-----ACCCGGACATGCACGGCGATGAACAAACAAGAGTGG
ATACCAATTGCAGATACAAGGCTTATAGAGTGGTGCCCAAGTAAGGGTGGAAACAATGGAGACGGAAAAGATGTTCATGT
TCTCGTCTTACTTGTGATGTGGGAATTATGAAAGCATCGAAATGCGATCGTGTTTGATGGTGCAACATCATTGGTGGAAG
AGGTACTCTCCGCAAAATCGAGGCCGAGGATAGATCATGGAAAACAACAGGCATCATCAAGGCGGATGGGGAGAGTCTCT
TTAGAGCTCTAACGGTGGGTAGTGATGCGAGAAGTTAGCAGCGTGTATACTGGA-TGCGTGGAGTTGGGTGTA-TATATG
TATATGTAAACCCAAAATGAAGGGGCTCTCTACCCCTCTCTCTC-TCTCTTCTATAATA---AGTACGCGTACTCATGCA
TATTTGAAAAAAAGAAAGAAATGAAAAAGAGATCTTTTATCAGATCGGAAGAGATTTTGGTGCGTACCGAGCGCGCTGGC
CAAAAGAGTCTTTTGGCATTGCTAGTGACTCGGCGCCCCAGCTGCAGTGTAGGCTC------------------------
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-------------------------------------GCCAAAAGATCAGCCCCACAGCGGTTGCACTGGATAAGATCGA
CACTAATCT--TATCGAAAACGAAAAGGCCGAACAAAACTATCCGCC---------CCCGCTTCTGGAAACTGCGACCCA
AGAACCAACC---CCCTCC---CTCCAAGCAGCCGCAACGCTCAGCAGAACGCAAACACGCCATCACCGCCGTCACACCA
AACGCAACAAAGCAGAGCAGACAGCAGAGGGTGGTCGACATCGGATCGGCATGATCCTCGTGGCGGTCATGGCGGAGCTG
CTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGGCGCCGCTGCGCATCCTGCCGCGCCG
CGTGCGGTTCGTCGTCCTCCGCACCCTCCCCTTCGCCTCCCCCTCGCCGCCCGTGCCGCCGCC------GCCCCCGCACG
CCGTCCCCGTTCTGCTCGCGCGCTGATCATGGGCGGATCGAGCTCAGCTCATGCTCTGG-------ACTC-----AAGTG
AGGCTGCTTCTTGTACATACTCCGGTCCGGTTACCGGCCCAATAACTCGGTCAGCAT-------GTACTCTGCTTGAGAT
GTTG-----------------------------------CTTGCCTGTTGTTTGACCTTGCGGACTAGTCA---GTCATG
GCTCAACTGGTGATGAGATATGTAAATTTCTGTA----TATATATGCCAGCTTGTCACTTTCAGATGTAGTATTTCGATT
CGCAAATTGTTGACTTGGAACAAAAATTCTCAAAGAGTCGATCAACTGCTAGTCTGCGTACAAACACTGTACAGGCAACC
CGCAAAACCGTCGGGTAAAAACCGTATTACGCC----------------------------GATTAAAGGGGATTGTGAG
GATTAAATCCCCTGC--------AAGTTAAATTCCTCCCCAATCCTTTTCAAGC---TCCAATCCCCTTGGGAAAAGATT
GAATTAAGGCAAGTGTTTGGAAATAAATAAATAACCATGAGTTTGTATAAATAAATAAAATAATTGTACCATTGATAAGC
CCGGTACGAGTACGGGA-GGCAATACACATACCGTGTATCCGCATATCTATATGTTAGAAGGGAGAGAGAGGATTGGTGG
AATAGTTGTTGTATTGCTTGAGCCTCGTTGGCATATATATAGGAGTACATGATCTACTTGGAGTACAAGCCAAGCCAGAA
TATTTCCTAGTCTAACCTATGTTTCCTAATACAATCACATTATTCAACATCCCCCCGCAGTCACAACGGTAGCAATGCAG
ACCGTGAGACTGAAGAAGAATTTGAAGGCAAGCCGACGGACACCCTCCAAAGTCGTAACGGTCGACGCATCACGGAGTCG
TGGCTAGAGTGGAAACCAATGAGGTTGCTCAAGCAGGCGGTAGCCCTTTGTGCCGTTTGTCGATGTAGCCGAGAGCGTGG
GTGGTGGAGTCGTGGTCGAGGTAGCCGTGCGAAGAATGCCGCGGTCGATGTCGAGTCGGGGTGGCCGGTGTCGAGGAAGT
CACCGTG
>chr5B_1
GCACAGTTCACATGGAAGTCCCGAGCGGCGCTGAGATGCAGATTCTTTGCATGGCTTGCCCTACGTAACAGATGCTGGAC
ATCTGACAGATTAGCACGGCATGGACTAGACCACCGAGAAGCCTGCCCGTTCTGCGACCAAGCGGAGGAGACCATAGATC
ATATCCTCGCCCAATGTGTCTTT-GCAAGGGAGGTATGGTATGGACCTGGACCTGCACGGCAATGAACAAACAAGAGTGG
ATACCAACTGGGGATACACGGCTTATAGAGTGGTGCCCAAATAAGGGTGGAAACAATGGAGACGGAAAAGATGTCCGTGC
CCTCGTCCTACTTGTGATGTGGGAATTATGGAAACATCGCAATGCGATCGTGTTCGATGGTGCAACACCATCGGTGGAAG
GGGTA--CTCCGCAAAATCGAGGCCGAGGGTAGATCATGGAAGGCAGCAGGCATCATCAAGGCGGATGAGGAGAGTTTCT
TTGGAGCTCTAATCGTGGGTAGTGACGCGAGAAGTTAGCAGCGTATATACTG-AACGCGTGGAGTTGGGTGTA-TATATG
TATATGTAAACCCAACGTGGTGGGGCTCTTTACCCC-----CTC-TCTCTTCTATAATATAAAGTACGCATACTCGTGCG
TATTCGAGAAAAAA------------------------------------------------------------------
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>chr5B_1
GCACAGTTCACATGGAAGTCCAGGGGGGCGCTGAGATGCAGATTCTTTGCATGGCTTGCCCTACGTAACAGATGCTGGAC
ATCTGACTGATTAGCACGGCGTGGACTAGACCACCAAGAAGCCTGCCCGTTCTGCAACCAAGCTGAGGAGACCATAGATC
ACATCCTCGCCCAATGTGTCTTT-GCAAGGGAGGTATGGTATGGACCTGGACCTGCACGACAATGAACAAACAAGAGTGG
ATACCAACTGGGGATACACGGCTTATAGAGTGGTGCCCAAATAAGGGTGGAAGCAATGGAGACGGAAAAGATGTCCGTGC
CCTCGTCCTACTTGTGATGTGGGAATTATGGAAACATCGCAATGCGATCGTGTTCGATGGTGCAACACCATCGGTGGAAG
GGGTA--CTCCGCAAAATCGAGGCCGAGGGTAGATCATGGAAGGCAGCAGGCATCATCAAGGCGGATGAGCAGAGTTTCT
TTGGAGCTCTAATGGTGGGTAGTGACGCGAGAAGTTAGCAGCGT--------GGACACGTGGAGTTGGGTCTATTATATG
TATATGTAAACCCAACGTGGAGGGGCTCTTTACCCC-----CTC-TCTCTTCTATAATATAAAGTACGCACACTCGTGCG
TATTCGAGAAAAAA------------------------------------------------------------------
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>chr3D_1
GCATAGTTCACTTGGAAGTTGAGGACGCCGCTGAGATGTAGGTTCTTTGCATGGCTTGCCCTGCGGAACAGATGTTGGAC
CTCTGACAGACTAGCACGGCGTGGACTAGACCACCAAGAAGCCTGCCCATTCTGCGACCAAGCGGACGAAAGCATTGGCG
ACATCCTTGTCCAATGTGTCCTT-GCAAGGGAGGTATGG------CCCGAGCCTACATGGCATTGAACAAACAAGAATGG
ATCCCAACAGGGGCTACAAGGCTTATATAATGGTGCACAAGTAAGGGTGGAAACAACGGAGAAGGGAAGGATGTATGTGC
CCTAATCCTGCTAGTGATGTCAAAACTATGGAAGCATAGTAACGCGATCGTGTTCGACGGTGCAACACCATCGGCGGGAA
GTGTA--CTCCGTAGAATTGAGGTTGAGAGTAGATCATGGAAGTCAGCGGGCATTATCAAGGCGGACATGGAGAGCTCCT
C-GGAGCTCTAAGAGT--GTAGTGACGTGAGAAGTTAGCACCATGTAAATTGGAACGCGTGGAGTTGGGTGTA-TATATG
TATATGTAAACCCAACATGGAGGG--------------------------------------------------------
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>chr5D_4
---CAGTTCACGTGGAGGTCCAGGGCGCCGTTGAGGTGCCGGTTCTTTGCATGGCTCGTGCTGCGAAACAGATGTTGGAC
CTCCGGTCGTTTAGCACGGCGTGGGCTGGACCATCAGGACACCTGCCCGTTCTACGACCAAGCGGAGGAGACCATAGATC
ACATCCTCGCCCAATGTGTTTGT-GCGAGGGAGATATGG-----ACCCGGATATGCACGGCGATGAACAAACAAGAGTGG
ATACCAACTGGGGCTACAAGGCTGATTGAGTGGTGCCCGAGCAAAGGTGGAAACAGTGGAGACGGTAAAGATATTCGCGC
CCTCGTCCTCCTTGTGATGTGGAAACTATGGAAGCACCGCAACTCGATCATGTTTGATGGTGCAACACCATCAGTGGAAG
GGGTA--CTCCGCAGAATAGAGACGAAGGGAAGATCGTGGAAGACAGCACGCATCATCAAGGCCGATGTGGAGAGCTTCT
TTAGAGCTCTAGCGGTGGGCAATGACGCGAGAAGTTAGCAACATGTAGG-TCGAACGCGTGGAGTTGGGTGTG-TATATG
TGTATATAAACCCAAAGTGGAGGGGCTCTTTACCCT-----CTTTTCTCTTCTATAATATATAGTACGCACACTCGTGCG
TATTCGAGAAAAAAAAA---------------------------------------------------------------
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>chr2B_7
------TTCACGTGGAAGTCCAGGGCGCCGTTGAGAGCCGG---TTTTGTGTGGCTTGAATTACGGAACACATGTTGGAC
CTCAGACAGACTAGCACGGCGTGAACTAGACCACCAAGAAGCCTGCCCGTTCTGCGACCAAGCGGAGGAGACCATCAATC
ACATCCTCGCCCAACATGTCTTTCGCGAGGGAGGTATGG-----ACCCGAGCCTGCACGGCCATGAATAAACAAGAGTGG
ATCCCAACAGGAGATACAAGGCTTATAGAGTGGTGCCCAAGCAAGGGTGGAAACAATGGAGAAGGGAGAGATGTCTGTGC
CCTAGTCATACTAGTGATGTGAGAACTATGAAAACATCGTAACGCGGTTGCGTTTGATGGTGCAACACCATCGGTGGAAA
GTGTA--CTCCATAAAATTGAGGTCGAGAGTAGATCATGGAAGTCAGTGGGCATTATCAAGGCGGACATAGAGAGCTTTC
TTGGAGCTCTTATAGTGGGTAGTGACGCGAGAGGATAGCAGCATGTATACTCAAATGCGTGAAGTTGTGTGTA-TGTATG
TATATCTAAACCCAACGTGGAAAGGCTCTTTACCCC-----CTC-TCTCTCCTTTAATGTAAAGTACGCACACTCGTG--
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>chr3A_676
GAACGA--------------------------------------------------------------------------
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----------------------------------------------------GATTTTGGTGCGTACCGAACTCGCTGGC
CAAAAGAGTCTTTTTGCATTGCTAGTGACTCGGCGCCCCAGCTGTAGTGTAGTGTGGCAAAAATGAACTGTGTTTGAAAT
TTTTTCACTCCACTGACTTTTTAGTGTGACGCTCGACAGTCAGGCGTCACACTATATTGTCCAGCGCCTAATTGACAGGC
GCTACACGCCTGTCTAGCGTCGCACTCTGAATTGTCTAAAAATTATTAAATTAGTGTGCAACGTTTAAGAGCTAAGCGCT
GCACTATTTGCATTATCCGTGCCGTGTTTTAGTTTAGTTTTCTGTACCGTGGCAGAGACAGGCCTGCCGCTGCTACGGGA
TGCTCGTCAGCAGCGTAGCTTGGCTTTTGTCAGTGATTTGTATGGTCTACTGCTAGCTATAGTATGGTCTACTGCTAGCT
GCTATAGTATGCTAGCCGGCTAGGCTGGATGAGATTTATTTTATCTCTTTCTTGTTTCTCCAGTAGATGTCTGCTCCCCT
CCCATGTACGGCGCTGCAACATCTTTCTTGCGTTTCATCAACTCTTGGATTTTTCTGCCCTCTCTTTACCACTAGTGGCA
TTTGCTACATAATTTGATTCTAATTCATCTATCTACATTACACCCTCTGCACCGCTGCGTACATGCAAGTAGTGCAGCGC
CTATGATCTAGGCGCTACACTATACTGTGTAGCGCCTAGCTCTTAGGCGTTGCACATTGACTTAGCAATTTTTAGATATT
CCGGAGTACGATGCTAGCCAGATGTGTAGCGCCTGTCAGTCAGGCGCTACACAGTGTAGTGTGACGCCTAGCTGTCGGGC
GCTACACGAAAGAGTCAGCAGAGTGAAAAAATTTCAAAGACAGTTCATTTTGTAAATTCTTTTTGTCCACAGGTTAAAAT
TGTCGTTTTTGCCGTGTAGTGTAGGCTCGCCTCACCAAAAGATCATCCCCACAACCAGCACGTAGGTCTAGCATTACTCG
TTAAAACCAAGTGAAAGGAGATTTATTACTAGCAGATCCCAATCAGGGGAAGAGATTACGCGGTACGCGCTGGCCAAAAG
AGTCTTTTGGCATTGCTAGTGACTCGGCGCCCCAGCTGCCAAAAGATCAGCCCCACAGCGGCGGTTGCAA----------
----------------------------------------------------------------TGGAAACTGCGACCCA
ACAACCAACC---TCCCTCCCTCTCCAAGCAGCCGCAACGCTCACCAGAACCCAAACACGCCATCACCGCCGTCACACCA
AACGCAGCAAAGCAGAGCAGAGGGCGAAG---GGTCGACATCGGATCGGCATGATCCTGGTGGCGGTCATGGCGGAGCTG
CTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGGCGCCGCTGCGCATCCTGCCGCGCCG
CGTGCGGTTCGTCGTCCTCCGCCCCCTCCCCTTCGCCTCCCCCTCGGCGCCCGTGCCGCCGCC------GCCCCCGCACG
CCGTCCCCGTTCTGCTCGCGCGCTGATCATGGGCGGATCCAGCTCAGCTCATGCTCTGAGCTCTGAACTCAAGTGAAGTG
AGGCTGCTTCTTGTACATACTCCGGTCCGGTTACTGGCCCAATAACATGGTTAGCTAAAAGAAAGTACTCTGCTTCTGAT
GTTTGGCTGTCCTAGAGATGTTGGGGTACCTTGTAATTTCTTGCCTGTTCTTTGACCTTGCGGAGTAGTCA---GTCATG
GCTCAACTGGTGATGAGATATGTAAATTTCTGTA----TAT----TCCAGCTTGTCGCTTTCAGATGT---ATTTCGATC
TGTAGACTGTTGATTTGGAACAAAAATTCCGAAAGAGTCGATCAACTGCTAGTCTGCGTACAAACACTGTACATGCAACC
CGCAAACCCGGGGGGTAAAAACCATATTATGCCTCGTTA-GATTGCAGTGGGTTTGAGGGGTATTAAAGGGGATTGTGAG
GATTATATCCCCTATTCCCCTGTAAGTTAAATTCCTCCCCAATCCTTTTCAAGCCTCTCCAATCCCCTTGGGAAGAGATT
AAATTAGGGCAAGTGTTTGGAAAAAAATAAATTCCCATGAGTTCATATAAATAAATGAAATAATTGTACCATTCATAAGG
CCGGTACGAGTACGGGAAGGCAATACACGTACCACGTACCTGCATATCTATAT---------------------------
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>chr3D_682
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-----------------------------------------------------ATTTTGGTGCGTACCGAGCGCGCTGGC
CAAAAGAGTCCTTTGGC---------------------------------------------------------------
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----------------------CTCGGCGCCCCAGCAGCCAAAAGATCAGCCCCACAGCGGTTGCAATGGATAAGACCGA
CACTAAACCTCTATCCGAAACGAAAAGGTCGAGCAAAACTATCCGCGGCGAAGCCACCCGCTTCCGGAAACTCCGACCCA
ACAACCAGCCTCTCCCTTC---CTCCAAGCAGCCGCAACGCTCAGCAGAACCCAAACAAACCATCACCGCTGTCACACCA
AACAAAGCA-----GAGCAGAGGGCGAAG---GGTCGACATCGGATCGGCATGATCCTCGTGGCGGTCATGGCGGAGCTG
CTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGGCGCCGCTGCGCATCCTGCCGCGCCG
CGTGCGGTTCGTCGTCCTCCGCACCCTCCCCTTCGCCTCCCCCTCGCCGCCCGTGCCGCCGCCGCCGCCGCCCGCGCACG
CCGTCCCCGTTCTGCTCGCGCGCTGATCATGGGCGGATCGAGCTTAGCTCATGCTTTGAGCTCTGAACTC-----AAGTG
AGGCTGCTTCTTGTACATACTCCGGTCCGGTTACTGGCCCAATAACTTGGTTAGCTAAAAGCAAGTACTCTGCTTCTGAT
GTTTGGCTGTCCTAGAGATGTTGGTGTACCTTGTAATTTCTTGCCTGTTCTTTGACCTTGCGGAGTAGTAGTCGGTCATG
GCTCAACTGGTGATGAGATATGTAAATTTCTGTATATATAT----GCCAGCATGTCGCTTTCGGATGC---ATTTCGATC
CGCAGATTGTTGATTTGGAACAAAAATTCCGAAAGAGTCGATCAACTGCTAGTCTGCGTACA-----------GGCAACC
CGCAAACCCGGTTGGTAAAAACCGTATTATGCCTTTGTACGATTGCATTGGGTTTGAGGGGGATTAAAGGGGATTGTGAG
GATTAAATCCCCTGC--------AAGTTAAATTCCTTCCCAATTCTTTTCAAGCCTCTCCAATCCTCTTGGGAAGAGATT
AAATTAGGGCAAGCGTTTGGGAAAAATAAA--------------------------------------------------
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>SNPs
------------------S-----------------S-------------------------------------------
S------------S----S------------------S-------------SS--------------------S------
-----------------------------S--------------------------------------------------
-------S--S-----------------------------------------------------------------S--S
S------S-------------------------------S---------------------------S---S--------
S----SS----------------------S------------S---S---------------------S-------S---
-------------------------S------------------------------------------------------
-------------------S---------S------SSSSS----------------------------S-----S---S
----S--S-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
--------------------------------------------S-------SS-S------------------------
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------------------------------------------------------------------S---------S---
------S-S------SS-----------S---S-------------S---------------------------------
-S---------------S---------------------------------S----------------------------
------S--------------SS--SS--SSS------------------------------------------------
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----------------------------------------------------------S---------------------
----------------------------------S------------S---S---SS------------------SS---
---S---------------------------------------------S--------------S---------------
-----------------------------------------SSSS-----------S-----------SSS--------S
----S--------S---------------SS-------------------------------------------------
------S---SS-----------------S--------------------------------------------------
--------------------------------------------------------------------------S-----
S-----S----------------S--------SS---------SS-----------S----------------S-----S
----------------------------S----SS---S-S------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_1887
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---------------------------GCCGAACAAAACTATCCGCC---------------------------------
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>reverse_3019
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----------------------------------------------------------TGGAGTACAAGCCAAGCCAG--
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