Multiple sequence alignment - TraesCS3B01G481600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G481600 chr3B 100.000 2724 0 0 1 2724 729002348 729005071 0.000000e+00 5031.0
1 TraesCS3B01G481600 chr3A 86.907 1833 112 52 651 2413 686807236 686809010 0.000000e+00 1938.0
2 TraesCS3B01G481600 chr3A 86.243 189 21 4 375 559 686807021 686807208 1.650000e-47 200.0
3 TraesCS3B01G481600 chr3A 78.689 183 9 14 2543 2724 686809082 686809235 8.030000e-16 95.3
4 TraesCS3B01G481600 chr3A 82.759 87 7 1 267 345 686806883 686806969 1.350000e-08 71.3
5 TraesCS3B01G481600 chr3D 84.699 1098 62 36 651 1734 549561949 549562954 0.000000e+00 1000.0
6 TraesCS3B01G481600 chr3D 79.512 410 50 22 2284 2678 549562969 549563359 7.480000e-66 261.0
7 TraesCS3B01G481600 chr3D 90.217 92 3 2 478 563 549561782 549561873 6.160000e-22 115.0
8 TraesCS3B01G481600 chr3D 94.444 36 0 2 71 105 556163449 556163483 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G481600 chr3B 729002348 729005071 2723 False 5031.000000 5031 100.000000 1 2724 1 chr3B.!!$F1 2723
1 TraesCS3B01G481600 chr3A 686806883 686809235 2352 False 576.150000 1938 83.649500 267 2724 4 chr3A.!!$F1 2457
2 TraesCS3B01G481600 chr3D 549561782 549563359 1577 False 458.666667 1000 84.809333 478 2678 3 chr3D.!!$F2 2200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.033920 ACCCGAAACTGTACCGGAAC 59.966 55.0 9.46 0.0 45.58 3.62 F
610 680 0.034896 GGCCCACTCGTCAGAAGAAA 59.965 55.0 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1330 0.112606 ACTGGTTGAGAGTCGGGAGA 59.887 55.0 0.0 0.0 0.0 3.71 R
2351 2497 0.031994 CTGAAACAAGGGGGCAAACG 59.968 55.0 0.0 0.0 0.0 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.875972 ACACATAGATGGTCCTTAAAGACT 57.124 37.500 4.28 0.00 36.95 3.24
24 25 7.973048 ACACATAGATGGTCCTTAAAGACTA 57.027 36.000 4.28 0.00 36.95 2.59
25 26 8.375493 ACACATAGATGGTCCTTAAAGACTAA 57.625 34.615 4.28 0.00 36.95 2.24
26 27 8.258708 ACACATAGATGGTCCTTAAAGACTAAC 58.741 37.037 4.28 0.00 36.95 2.34
27 28 7.711339 CACATAGATGGTCCTTAAAGACTAACC 59.289 40.741 4.28 0.00 36.95 2.85
28 29 7.402071 ACATAGATGGTCCTTAAAGACTAACCA 59.598 37.037 4.28 0.00 40.77 3.67
29 30 6.301169 AGATGGTCCTTAAAGACTAACCAG 57.699 41.667 4.28 0.00 39.92 4.00
30 31 4.903045 TGGTCCTTAAAGACTAACCAGG 57.097 45.455 4.28 0.00 36.95 4.45
31 32 3.585732 TGGTCCTTAAAGACTAACCAGGG 59.414 47.826 4.28 0.00 36.95 4.45
32 33 3.842436 GGTCCTTAAAGACTAACCAGGGA 59.158 47.826 4.28 0.00 36.95 4.20
33 34 4.473922 GGTCCTTAAAGACTAACCAGGGAT 59.526 45.833 4.28 0.00 36.95 3.85
34 35 5.045066 GGTCCTTAAAGACTAACCAGGGATT 60.045 44.000 4.28 0.00 36.95 3.01
35 36 6.157471 GGTCCTTAAAGACTAACCAGGGATTA 59.843 42.308 4.28 0.00 36.95 1.75
36 37 7.147355 GGTCCTTAAAGACTAACCAGGGATTAT 60.147 40.741 4.28 0.00 36.95 1.28
37 38 8.272889 GTCCTTAAAGACTAACCAGGGATTATT 58.727 37.037 0.00 0.00 33.79 1.40
38 39 8.272173 TCCTTAAAGACTAACCAGGGATTATTG 58.728 37.037 0.00 0.00 0.00 1.90
39 40 8.053355 CCTTAAAGACTAACCAGGGATTATTGT 58.947 37.037 0.00 0.00 0.00 2.71
40 41 9.110502 CTTAAAGACTAACCAGGGATTATTGTC 57.889 37.037 0.00 0.00 0.00 3.18
41 42 6.893020 AAGACTAACCAGGGATTATTGTCT 57.107 37.500 0.00 0.00 34.29 3.41
42 43 6.893020 AGACTAACCAGGGATTATTGTCTT 57.107 37.500 0.00 0.00 0.00 3.01
43 44 6.653989 AGACTAACCAGGGATTATTGTCTTG 58.346 40.000 0.00 0.00 0.00 3.02
44 45 6.443849 AGACTAACCAGGGATTATTGTCTTGA 59.556 38.462 0.00 0.00 0.00 3.02
45 46 6.653989 ACTAACCAGGGATTATTGTCTTGAG 58.346 40.000 0.00 0.00 0.00 3.02
46 47 5.779241 AACCAGGGATTATTGTCTTGAGA 57.221 39.130 0.00 0.00 0.00 3.27
47 48 5.104259 ACCAGGGATTATTGTCTTGAGAC 57.896 43.478 4.20 4.20 44.97 3.36
48 49 4.080299 ACCAGGGATTATTGTCTTGAGACC 60.080 45.833 8.56 0.00 44.15 3.85
49 50 4.455606 CAGGGATTATTGTCTTGAGACCC 58.544 47.826 8.56 0.00 44.15 4.46
50 51 3.134804 AGGGATTATTGTCTTGAGACCCG 59.865 47.826 8.56 0.00 44.15 5.28
51 52 3.134081 GGGATTATTGTCTTGAGACCCGA 59.866 47.826 8.56 0.00 44.15 5.14
52 53 4.383770 GGGATTATTGTCTTGAGACCCGAA 60.384 45.833 8.56 1.00 44.15 4.30
53 54 5.183228 GGATTATTGTCTTGAGACCCGAAA 58.817 41.667 8.56 0.00 44.15 3.46
54 55 5.064834 GGATTATTGTCTTGAGACCCGAAAC 59.935 44.000 8.56 0.00 44.15 2.78
55 56 3.771577 ATTGTCTTGAGACCCGAAACT 57.228 42.857 8.56 0.00 44.15 2.66
56 57 2.526304 TGTCTTGAGACCCGAAACTG 57.474 50.000 8.56 0.00 44.15 3.16
57 58 1.760613 TGTCTTGAGACCCGAAACTGT 59.239 47.619 8.56 0.00 44.15 3.55
58 59 2.960384 TGTCTTGAGACCCGAAACTGTA 59.040 45.455 8.56 0.00 44.15 2.74
59 60 3.243636 TGTCTTGAGACCCGAAACTGTAC 60.244 47.826 8.56 0.00 44.15 2.90
60 61 2.298163 TCTTGAGACCCGAAACTGTACC 59.702 50.000 0.00 0.00 0.00 3.34
61 62 0.599558 TGAGACCCGAAACTGTACCG 59.400 55.000 0.00 0.00 0.00 4.02
62 63 0.108945 GAGACCCGAAACTGTACCGG 60.109 60.000 0.00 0.00 42.64 5.28
63 64 0.540365 AGACCCGAAACTGTACCGGA 60.540 55.000 9.46 0.00 45.58 5.14
64 65 0.318120 GACCCGAAACTGTACCGGAA 59.682 55.000 9.46 0.00 45.58 4.30
65 66 0.033920 ACCCGAAACTGTACCGGAAC 59.966 55.000 9.46 0.00 45.58 3.62
66 67 0.319405 CCCGAAACTGTACCGGAACT 59.681 55.000 9.46 0.00 45.58 3.01
67 68 1.545582 CCCGAAACTGTACCGGAACTA 59.454 52.381 9.46 0.00 45.58 2.24
68 69 2.029110 CCCGAAACTGTACCGGAACTAA 60.029 50.000 9.46 0.00 45.58 2.24
69 70 3.368739 CCCGAAACTGTACCGGAACTAAT 60.369 47.826 9.46 0.00 45.58 1.73
70 71 4.142182 CCCGAAACTGTACCGGAACTAATA 60.142 45.833 9.46 0.00 45.58 0.98
71 72 5.410067 CCGAAACTGTACCGGAACTAATAA 58.590 41.667 9.46 0.00 45.58 1.40
72 73 5.517770 CCGAAACTGTACCGGAACTAATAAG 59.482 44.000 9.46 0.00 45.58 1.73
73 74 6.095377 CGAAACTGTACCGGAACTAATAAGT 58.905 40.000 9.46 0.00 37.65 2.24
74 75 7.250569 CGAAACTGTACCGGAACTAATAAGTA 58.749 38.462 9.46 0.00 33.75 2.24
75 76 7.218963 CGAAACTGTACCGGAACTAATAAGTAC 59.781 40.741 9.46 0.00 33.75 2.73
76 77 7.709149 AACTGTACCGGAACTAATAAGTACT 57.291 36.000 9.46 0.00 33.75 2.73
77 78 7.709149 ACTGTACCGGAACTAATAAGTACTT 57.291 36.000 9.46 13.68 33.75 2.24
78 79 7.766283 ACTGTACCGGAACTAATAAGTACTTC 58.234 38.462 12.39 0.00 33.75 3.01
79 80 7.100458 TGTACCGGAACTAATAAGTACTTCC 57.900 40.000 12.39 4.34 33.75 3.46
80 81 6.891908 TGTACCGGAACTAATAAGTACTTCCT 59.108 38.462 12.39 2.95 33.75 3.36
81 82 6.462552 ACCGGAACTAATAAGTACTTCCTC 57.537 41.667 12.39 1.26 33.75 3.71
82 83 5.362143 ACCGGAACTAATAAGTACTTCCTCC 59.638 44.000 12.39 8.97 33.75 4.30
83 84 5.506982 CCGGAACTAATAAGTACTTCCTCCG 60.507 48.000 12.39 18.41 43.51 4.63
84 85 5.067023 CGGAACTAATAAGTACTTCCTCCGT 59.933 44.000 12.39 1.77 40.96 4.69
85 86 6.502652 GGAACTAATAAGTACTTCCTCCGTC 58.497 44.000 12.39 4.72 33.75 4.79
86 87 6.320926 GGAACTAATAAGTACTTCCTCCGTCT 59.679 42.308 12.39 0.00 33.75 4.18
87 88 6.940831 ACTAATAAGTACTTCCTCCGTCTC 57.059 41.667 12.39 0.00 32.84 3.36
88 89 6.421485 ACTAATAAGTACTTCCTCCGTCTCA 58.579 40.000 12.39 0.00 32.84 3.27
89 90 7.061688 ACTAATAAGTACTTCCTCCGTCTCAT 58.938 38.462 12.39 0.00 32.84 2.90
90 91 8.216423 ACTAATAAGTACTTCCTCCGTCTCATA 58.784 37.037 12.39 0.00 32.84 2.15
91 92 7.893124 AATAAGTACTTCCTCCGTCTCATAA 57.107 36.000 12.39 0.00 0.00 1.90
92 93 8.480133 AATAAGTACTTCCTCCGTCTCATAAT 57.520 34.615 12.39 0.00 0.00 1.28
93 94 5.776173 AGTACTTCCTCCGTCTCATAATG 57.224 43.478 0.00 0.00 0.00 1.90
94 95 5.202004 AGTACTTCCTCCGTCTCATAATGT 58.798 41.667 0.00 0.00 0.00 2.71
95 96 6.363065 AGTACTTCCTCCGTCTCATAATGTA 58.637 40.000 0.00 0.00 0.00 2.29
96 97 6.832384 AGTACTTCCTCCGTCTCATAATGTAA 59.168 38.462 0.00 0.00 0.00 2.41
97 98 6.150396 ACTTCCTCCGTCTCATAATGTAAG 57.850 41.667 0.00 0.00 0.00 2.34
98 99 5.657302 ACTTCCTCCGTCTCATAATGTAAGT 59.343 40.000 0.00 0.00 0.00 2.24
99 100 6.832384 ACTTCCTCCGTCTCATAATGTAAGTA 59.168 38.462 0.00 0.00 0.00 2.24
100 101 6.630444 TCCTCCGTCTCATAATGTAAGTAC 57.370 41.667 0.00 0.00 0.00 2.73
101 102 5.237996 TCCTCCGTCTCATAATGTAAGTACG 59.762 44.000 0.00 0.00 0.00 3.67
102 103 5.008415 CCTCCGTCTCATAATGTAAGTACGT 59.992 44.000 0.00 0.00 0.00 3.57
103 104 6.441093 TCCGTCTCATAATGTAAGTACGTT 57.559 37.500 0.00 1.78 38.78 3.99
104 105 6.855836 TCCGTCTCATAATGTAAGTACGTTT 58.144 36.000 0.00 0.00 36.80 3.60
105 106 6.968904 TCCGTCTCATAATGTAAGTACGTTTC 59.031 38.462 0.00 0.00 36.80 2.78
106 107 6.971184 CCGTCTCATAATGTAAGTACGTTTCT 59.029 38.462 0.00 0.00 36.80 2.52
107 108 7.044249 CCGTCTCATAATGTAAGTACGTTTCTG 60.044 40.741 0.00 1.70 36.80 3.02
108 109 7.695201 CGTCTCATAATGTAAGTACGTTTCTGA 59.305 37.037 0.00 5.22 36.80 3.27
109 110 9.350357 GTCTCATAATGTAAGTACGTTTCTGAA 57.650 33.333 0.00 0.00 36.80 3.02
110 111 9.917129 TCTCATAATGTAAGTACGTTTCTGAAA 57.083 29.630 0.00 0.00 36.80 2.69
111 112 9.953825 CTCATAATGTAAGTACGTTTCTGAAAC 57.046 33.333 20.54 20.54 36.80 2.78
112 113 9.701098 TCATAATGTAAGTACGTTTCTGAAACT 57.299 29.630 25.64 16.90 39.23 2.66
117 118 9.617975 ATGTAAGTACGTTTCTGAAACTACTAC 57.382 33.333 26.79 23.98 39.23 2.73
118 119 8.620416 TGTAAGTACGTTTCTGAAACTACTACA 58.380 33.333 26.79 25.12 39.23 2.74
119 120 7.920908 AAGTACGTTTCTGAAACTACTACAC 57.079 36.000 26.79 17.72 39.23 2.90
120 121 7.269477 AGTACGTTTCTGAAACTACTACACT 57.731 36.000 26.12 18.46 39.23 3.55
121 122 8.383318 AGTACGTTTCTGAAACTACTACACTA 57.617 34.615 26.12 8.69 39.23 2.74
122 123 8.502387 AGTACGTTTCTGAAACTACTACACTAG 58.498 37.037 26.12 14.70 39.23 2.57
123 124 7.269477 ACGTTTCTGAAACTACTACACTAGT 57.731 36.000 25.64 12.52 39.23 2.57
124 125 8.383318 ACGTTTCTGAAACTACTACACTAGTA 57.617 34.615 25.64 0.00 39.23 1.82
125 126 8.840321 ACGTTTCTGAAACTACTACACTAGTAA 58.160 33.333 25.64 0.00 40.49 2.24
126 127 9.111702 CGTTTCTGAAACTACTACACTAGTAAC 57.888 37.037 25.64 0.34 40.49 2.50
127 128 9.956720 GTTTCTGAAACTACTACACTAGTAACA 57.043 33.333 22.55 0.00 40.49 2.41
132 133 9.533253 TGAAACTACTACACTAGTAACAAAACC 57.467 33.333 0.00 0.00 40.49 3.27
133 134 8.579682 AAACTACTACACTAGTAACAAAACCG 57.420 34.615 0.00 0.00 40.49 4.44
134 135 7.277174 ACTACTACACTAGTAACAAAACCGT 57.723 36.000 0.00 0.00 40.49 4.83
135 136 7.716612 ACTACTACACTAGTAACAAAACCGTT 58.283 34.615 0.00 0.00 40.49 4.44
136 137 7.862873 ACTACTACACTAGTAACAAAACCGTTC 59.137 37.037 0.00 0.00 40.49 3.95
137 138 6.809869 ACTACACTAGTAACAAAACCGTTCT 58.190 36.000 0.00 0.00 37.23 3.01
138 139 7.267857 ACTACACTAGTAACAAAACCGTTCTT 58.732 34.615 0.00 0.00 37.23 2.52
139 140 8.413229 ACTACACTAGTAACAAAACCGTTCTTA 58.587 33.333 0.00 0.00 37.23 2.10
140 141 7.468922 ACACTAGTAACAAAACCGTTCTTAC 57.531 36.000 0.00 0.00 0.00 2.34
141 142 7.041107 ACACTAGTAACAAAACCGTTCTTACA 58.959 34.615 0.00 0.00 0.00 2.41
142 143 7.712205 ACACTAGTAACAAAACCGTTCTTACAT 59.288 33.333 0.00 0.63 0.00 2.29
143 144 8.553696 CACTAGTAACAAAACCGTTCTTACATT 58.446 33.333 0.00 0.00 0.00 2.71
144 145 9.112725 ACTAGTAACAAAACCGTTCTTACATTT 57.887 29.630 0.00 0.00 0.00 2.32
145 146 9.940166 CTAGTAACAAAACCGTTCTTACATTTT 57.060 29.630 8.23 0.00 0.00 1.82
147 148 9.940166 AGTAACAAAACCGTTCTTACATTTTAG 57.060 29.630 8.23 0.00 0.00 1.85
148 149 9.172820 GTAACAAAACCGTTCTTACATTTTAGG 57.827 33.333 0.00 0.00 0.00 2.69
149 150 7.571080 ACAAAACCGTTCTTACATTTTAGGA 57.429 32.000 0.00 0.00 0.00 2.94
150 151 7.420002 ACAAAACCGTTCTTACATTTTAGGAC 58.580 34.615 0.00 0.00 0.00 3.85
151 152 7.067251 ACAAAACCGTTCTTACATTTTAGGACA 59.933 33.333 0.00 0.00 0.00 4.02
152 153 6.796705 AACCGTTCTTACATTTTAGGACAG 57.203 37.500 0.00 0.00 0.00 3.51
153 154 5.243207 ACCGTTCTTACATTTTAGGACAGG 58.757 41.667 0.00 0.00 0.00 4.00
154 155 4.634443 CCGTTCTTACATTTTAGGACAGGG 59.366 45.833 0.00 0.00 0.00 4.45
155 156 5.484715 CGTTCTTACATTTTAGGACAGGGA 58.515 41.667 0.00 0.00 0.00 4.20
156 157 5.581085 CGTTCTTACATTTTAGGACAGGGAG 59.419 44.000 0.00 0.00 0.00 4.30
157 158 6.473758 GTTCTTACATTTTAGGACAGGGAGT 58.526 40.000 0.00 0.00 0.00 3.85
158 159 7.578189 CGTTCTTACATTTTAGGACAGGGAGTA 60.578 40.741 0.00 0.00 0.00 2.59
159 160 7.419711 TCTTACATTTTAGGACAGGGAGTAG 57.580 40.000 0.00 0.00 0.00 2.57
160 161 7.186972 TCTTACATTTTAGGACAGGGAGTAGA 58.813 38.462 0.00 0.00 0.00 2.59
161 162 7.844779 TCTTACATTTTAGGACAGGGAGTAGAT 59.155 37.037 0.00 0.00 0.00 1.98
162 163 6.893020 ACATTTTAGGACAGGGAGTAGATT 57.107 37.500 0.00 0.00 0.00 2.40
163 164 7.989947 ACATTTTAGGACAGGGAGTAGATTA 57.010 36.000 0.00 0.00 0.00 1.75
164 165 7.793036 ACATTTTAGGACAGGGAGTAGATTAC 58.207 38.462 0.00 0.00 0.00 1.89
165 166 7.624077 ACATTTTAGGACAGGGAGTAGATTACT 59.376 37.037 0.00 0.00 42.86 2.24
166 167 8.487028 CATTTTAGGACAGGGAGTAGATTACTT 58.513 37.037 0.00 0.00 39.59 2.24
167 168 8.445361 TTTTAGGACAGGGAGTAGATTACTTT 57.555 34.615 0.00 0.00 39.59 2.66
168 169 8.445361 TTTAGGACAGGGAGTAGATTACTTTT 57.555 34.615 0.00 0.00 39.59 2.27
169 170 6.547930 AGGACAGGGAGTAGATTACTTTTC 57.452 41.667 0.00 0.00 39.59 2.29
170 171 5.425862 AGGACAGGGAGTAGATTACTTTTCC 59.574 44.000 0.00 0.00 39.59 3.13
171 172 5.425862 GGACAGGGAGTAGATTACTTTTCCT 59.574 44.000 0.00 0.00 39.59 3.36
172 173 6.301169 ACAGGGAGTAGATTACTTTTCCTG 57.699 41.667 20.20 20.20 45.91 3.86
173 174 5.785940 ACAGGGAGTAGATTACTTTTCCTGT 59.214 40.000 20.98 20.98 46.94 4.00
174 175 6.712276 CAGGGAGTAGATTACTTTTCCTGTT 58.288 40.000 16.94 0.00 41.46 3.16
175 176 7.848128 CAGGGAGTAGATTACTTTTCCTGTTA 58.152 38.462 16.94 0.00 41.46 2.41
176 177 7.764901 CAGGGAGTAGATTACTTTTCCTGTTAC 59.235 40.741 16.94 0.00 41.46 2.50
177 178 7.679025 AGGGAGTAGATTACTTTTCCTGTTACT 59.321 37.037 0.00 0.00 39.59 2.24
178 179 8.975295 GGGAGTAGATTACTTTTCCTGTTACTA 58.025 37.037 0.00 0.00 39.59 1.82
188 189 8.703378 ACTTTTCCTGTTACTAGTGTAGTAGT 57.297 34.615 5.39 4.90 41.84 2.73
189 190 9.140874 ACTTTTCCTGTTACTAGTGTAGTAGTT 57.859 33.333 5.39 0.00 41.84 2.24
190 191 9.978044 CTTTTCCTGTTACTAGTGTAGTAGTTT 57.022 33.333 5.39 0.00 41.84 2.66
191 192 9.971922 TTTTCCTGTTACTAGTGTAGTAGTTTC 57.028 33.333 5.39 1.04 41.84 2.78
192 193 8.696043 TTCCTGTTACTAGTGTAGTAGTTTCA 57.304 34.615 5.39 4.78 41.84 2.69
193 194 8.332996 TCCTGTTACTAGTGTAGTAGTTTCAG 57.667 38.462 5.39 11.83 41.84 3.02
194 195 8.159447 TCCTGTTACTAGTGTAGTAGTTTCAGA 58.841 37.037 20.06 11.25 41.84 3.27
195 196 8.790718 CCTGTTACTAGTGTAGTAGTTTCAGAA 58.209 37.037 20.06 4.76 41.84 3.02
197 198 9.956720 TGTTACTAGTGTAGTAGTTTCAGAAAC 57.043 33.333 17.11 17.11 41.84 2.78
198 199 9.956720 GTTACTAGTGTAGTAGTTTCAGAAACA 57.043 33.333 24.85 10.54 41.84 2.83
201 202 9.880157 ACTAGTGTAGTAGTTTCAGAAACAAAA 57.120 29.630 24.85 9.60 43.79 2.44
203 204 8.209917 AGTGTAGTAGTTTCAGAAACAAAAGG 57.790 34.615 24.85 0.00 43.79 3.11
204 205 8.044908 AGTGTAGTAGTTTCAGAAACAAAAGGA 58.955 33.333 24.85 5.06 43.79 3.36
205 206 8.336080 GTGTAGTAGTTTCAGAAACAAAAGGAG 58.664 37.037 24.85 0.00 43.79 3.69
206 207 6.378710 AGTAGTTTCAGAAACAAAAGGAGC 57.621 37.500 24.85 7.95 43.79 4.70
207 208 4.292977 AGTTTCAGAAACAAAAGGAGCG 57.707 40.909 24.85 0.00 43.79 5.03
208 209 3.945285 AGTTTCAGAAACAAAAGGAGCGA 59.055 39.130 24.85 0.00 43.79 4.93
209 210 4.580580 AGTTTCAGAAACAAAAGGAGCGAT 59.419 37.500 24.85 0.20 43.79 4.58
210 211 4.749245 TTCAGAAACAAAAGGAGCGATC 57.251 40.909 0.00 0.00 0.00 3.69
211 212 3.074412 TCAGAAACAAAAGGAGCGATCC 58.926 45.455 13.00 13.00 0.00 3.36
212 213 2.813754 CAGAAACAAAAGGAGCGATCCA 59.186 45.455 23.83 0.00 0.00 3.41
213 214 3.077359 AGAAACAAAAGGAGCGATCCAG 58.923 45.455 23.83 11.02 0.00 3.86
214 215 1.168714 AACAAAAGGAGCGATCCAGC 58.831 50.000 23.83 0.00 37.41 4.85
215 216 0.036732 ACAAAAGGAGCGATCCAGCA 59.963 50.000 23.83 0.00 40.15 4.41
216 217 1.167851 CAAAAGGAGCGATCCAGCAA 58.832 50.000 23.83 0.00 40.15 3.91
217 218 1.131883 CAAAAGGAGCGATCCAGCAAG 59.868 52.381 23.83 3.56 40.15 4.01
218 219 0.615331 AAAGGAGCGATCCAGCAAGA 59.385 50.000 23.83 0.00 40.15 3.02
219 220 0.615331 AAGGAGCGATCCAGCAAGAA 59.385 50.000 23.83 0.00 40.15 2.52
220 221 0.615331 AGGAGCGATCCAGCAAGAAA 59.385 50.000 23.83 0.00 40.15 2.52
221 222 1.003580 AGGAGCGATCCAGCAAGAAAA 59.996 47.619 23.83 0.00 40.15 2.29
222 223 2.019984 GGAGCGATCCAGCAAGAAAAT 58.980 47.619 16.44 0.00 40.15 1.82
223 224 2.032675 GGAGCGATCCAGCAAGAAAATC 59.967 50.000 16.44 0.00 40.15 2.17
224 225 2.019984 AGCGATCCAGCAAGAAAATCC 58.980 47.619 0.00 0.00 40.15 3.01
225 226 1.745087 GCGATCCAGCAAGAAAATCCA 59.255 47.619 0.00 0.00 37.05 3.41
226 227 2.360165 GCGATCCAGCAAGAAAATCCAT 59.640 45.455 0.00 0.00 37.05 3.41
227 228 3.549625 GCGATCCAGCAAGAAAATCCATC 60.550 47.826 0.00 0.00 37.05 3.51
228 229 3.303593 CGATCCAGCAAGAAAATCCATCG 60.304 47.826 0.00 0.00 0.00 3.84
229 230 3.071874 TCCAGCAAGAAAATCCATCGT 57.928 42.857 0.00 0.00 0.00 3.73
230 231 3.420893 TCCAGCAAGAAAATCCATCGTT 58.579 40.909 0.00 0.00 0.00 3.85
231 232 3.826157 TCCAGCAAGAAAATCCATCGTTT 59.174 39.130 0.00 0.00 0.00 3.60
232 233 5.007034 TCCAGCAAGAAAATCCATCGTTTA 58.993 37.500 0.00 0.00 0.00 2.01
233 234 5.095490 CCAGCAAGAAAATCCATCGTTTAC 58.905 41.667 0.00 0.00 0.00 2.01
234 235 5.106157 CCAGCAAGAAAATCCATCGTTTACT 60.106 40.000 0.00 0.00 0.00 2.24
235 236 6.093495 CCAGCAAGAAAATCCATCGTTTACTA 59.907 38.462 0.00 0.00 0.00 1.82
236 237 7.201732 CCAGCAAGAAAATCCATCGTTTACTAT 60.202 37.037 0.00 0.00 0.00 2.12
237 238 8.826710 CAGCAAGAAAATCCATCGTTTACTATA 58.173 33.333 0.00 0.00 0.00 1.31
238 239 9.561069 AGCAAGAAAATCCATCGTTTACTATAT 57.439 29.630 0.00 0.00 0.00 0.86
256 257 9.673454 TTACTATATAGACACAATAACACGCAG 57.327 33.333 16.79 0.00 0.00 5.18
257 258 7.145985 ACTATATAGACACAATAACACGCAGG 58.854 38.462 16.79 0.00 0.00 4.85
258 259 1.808411 AGACACAATAACACGCAGGG 58.192 50.000 0.00 0.00 0.00 4.45
259 260 1.071699 AGACACAATAACACGCAGGGT 59.928 47.619 0.00 0.00 0.00 4.34
260 261 1.463444 GACACAATAACACGCAGGGTC 59.537 52.381 0.00 0.00 0.00 4.46
261 262 1.202710 ACACAATAACACGCAGGGTCA 60.203 47.619 0.00 0.00 0.00 4.02
262 263 1.876799 CACAATAACACGCAGGGTCAA 59.123 47.619 0.00 0.00 0.00 3.18
263 264 2.487762 CACAATAACACGCAGGGTCAAT 59.512 45.455 0.00 0.00 0.00 2.57
264 265 3.057596 CACAATAACACGCAGGGTCAATT 60.058 43.478 0.00 0.00 0.00 2.32
265 266 4.155099 CACAATAACACGCAGGGTCAATTA 59.845 41.667 0.00 0.00 0.00 1.40
269 270 2.968675 ACACGCAGGGTCAATTAGTAC 58.031 47.619 0.00 0.00 0.00 2.73
278 279 6.372659 GCAGGGTCAATTAGTACCATATCATG 59.627 42.308 6.24 0.00 37.51 3.07
281 282 7.292356 AGGGTCAATTAGTACCATATCATGACA 59.708 37.037 0.00 0.00 37.51 3.58
282 283 7.604164 GGGTCAATTAGTACCATATCATGACAG 59.396 40.741 0.00 0.00 37.51 3.51
326 335 4.336433 ACACACACAAATCAAACAGGAGAG 59.664 41.667 0.00 0.00 0.00 3.20
331 340 3.181454 ACAAATCAAACAGGAGAGGTCGT 60.181 43.478 0.00 0.00 0.00 4.34
333 342 4.457834 AATCAAACAGGAGAGGTCGTAG 57.542 45.455 0.00 0.00 0.00 3.51
345 354 3.564455 GTCGTAGGCCCGTGATAAG 57.436 57.895 0.00 0.00 0.00 1.73
349 358 1.067776 CGTAGGCCCGTGATAAGGATC 60.068 57.143 0.00 0.00 0.00 3.36
351 360 1.343069 AGGCCCGTGATAAGGATCTC 58.657 55.000 0.00 0.00 32.79 2.75
352 361 1.133009 AGGCCCGTGATAAGGATCTCT 60.133 52.381 0.00 0.00 32.79 3.10
354 363 2.104963 GGCCCGTGATAAGGATCTCTTT 59.895 50.000 0.00 0.00 36.93 2.52
356 365 3.643763 CCCGTGATAAGGATCTCTTTCG 58.356 50.000 2.37 3.97 36.93 3.46
357 366 3.318275 CCCGTGATAAGGATCTCTTTCGA 59.682 47.826 2.37 0.00 36.93 3.71
358 367 4.202121 CCCGTGATAAGGATCTCTTTCGAA 60.202 45.833 0.00 0.00 36.93 3.71
359 368 4.979197 CCGTGATAAGGATCTCTTTCGAAG 59.021 45.833 0.00 0.00 36.93 3.79
361 370 5.221067 CGTGATAAGGATCTCTTTCGAAGGA 60.221 44.000 9.82 9.82 36.93 3.36
362 371 6.574350 GTGATAAGGATCTCTTTCGAAGGAA 58.426 40.000 11.41 3.43 36.93 3.36
365 386 7.766278 TGATAAGGATCTCTTTCGAAGGAAAAG 59.234 37.037 11.41 0.00 36.08 2.27
389 410 3.842732 AAATCGGGTTCGGTTTGATTC 57.157 42.857 0.00 0.00 46.50 2.52
390 411 1.746470 ATCGGGTTCGGTTTGATTCC 58.254 50.000 0.00 0.00 36.95 3.01
391 412 0.321830 TCGGGTTCGGTTTGATTCCC 60.322 55.000 0.00 0.00 37.60 3.97
392 413 0.606944 CGGGTTCGGTTTGATTCCCA 60.607 55.000 0.00 0.00 39.59 4.37
596 666 2.719531 TTTATTATGCGAGTGGCCCA 57.280 45.000 0.00 0.00 42.61 5.36
607 677 1.374758 GTGGCCCACTCGTCAGAAG 60.375 63.158 6.63 0.00 0.00 2.85
610 680 0.034896 GGCCCACTCGTCAGAAGAAA 59.965 55.000 0.00 0.00 0.00 2.52
613 683 2.814336 GCCCACTCGTCAGAAGAAAAAT 59.186 45.455 0.00 0.00 0.00 1.82
616 686 5.123979 GCCCACTCGTCAGAAGAAAAATAAT 59.876 40.000 0.00 0.00 0.00 1.28
617 687 6.315393 GCCCACTCGTCAGAAGAAAAATAATA 59.685 38.462 0.00 0.00 0.00 0.98
618 688 7.466050 GCCCACTCGTCAGAAGAAAAATAATAG 60.466 40.741 0.00 0.00 0.00 1.73
619 689 7.402640 CCACTCGTCAGAAGAAAAATAATAGC 58.597 38.462 0.00 0.00 0.00 2.97
620 690 7.113658 CACTCGTCAGAAGAAAAATAATAGCG 58.886 38.462 0.00 0.00 0.00 4.26
621 691 6.032722 TCGTCAGAAGAAAAATAATAGCGC 57.967 37.500 0.00 0.00 0.00 5.92
622 692 5.006358 TCGTCAGAAGAAAAATAATAGCGCC 59.994 40.000 2.29 0.00 0.00 6.53
623 693 5.511571 GTCAGAAGAAAAATAATAGCGCCC 58.488 41.667 2.29 0.00 0.00 6.13
624 694 4.578928 TCAGAAGAAAAATAATAGCGCCCC 59.421 41.667 2.29 0.00 0.00 5.80
625 695 3.564225 AGAAGAAAAATAATAGCGCCCCG 59.436 43.478 2.29 0.00 0.00 5.73
626 696 2.927028 AGAAAAATAATAGCGCCCCGT 58.073 42.857 2.29 0.00 0.00 5.28
627 697 4.075963 AGAAAAATAATAGCGCCCCGTA 57.924 40.909 2.29 0.00 0.00 4.02
628 698 3.811497 AGAAAAATAATAGCGCCCCGTAC 59.189 43.478 2.29 0.00 0.00 3.67
629 699 3.480505 AAAATAATAGCGCCCCGTACT 57.519 42.857 2.29 0.00 0.00 2.73
630 700 4.605640 AAAATAATAGCGCCCCGTACTA 57.394 40.909 2.29 0.00 0.00 1.82
631 701 4.605640 AAATAATAGCGCCCCGTACTAA 57.394 40.909 2.29 0.00 0.00 2.24
632 702 4.813750 AATAATAGCGCCCCGTACTAAT 57.186 40.909 2.29 0.00 0.00 1.73
633 703 5.920193 AATAATAGCGCCCCGTACTAATA 57.080 39.130 2.29 0.00 0.00 0.98
634 704 5.920193 ATAATAGCGCCCCGTACTAATAA 57.080 39.130 2.29 0.00 0.00 1.40
635 705 4.813750 AATAGCGCCCCGTACTAATAAT 57.186 40.909 2.29 0.00 0.00 1.28
636 706 5.920193 AATAGCGCCCCGTACTAATAATA 57.080 39.130 2.29 0.00 0.00 0.98
637 707 5.920193 ATAGCGCCCCGTACTAATAATAA 57.080 39.130 2.29 0.00 0.00 1.40
638 708 4.813750 AGCGCCCCGTACTAATAATAAT 57.186 40.909 2.29 0.00 0.00 1.28
639 709 4.752146 AGCGCCCCGTACTAATAATAATC 58.248 43.478 2.29 0.00 0.00 1.75
640 710 3.867493 GCGCCCCGTACTAATAATAATCC 59.133 47.826 0.00 0.00 0.00 3.01
641 711 4.436332 CGCCCCGTACTAATAATAATCCC 58.564 47.826 0.00 0.00 0.00 3.85
642 712 4.436332 GCCCCGTACTAATAATAATCCCG 58.564 47.826 0.00 0.00 0.00 5.14
643 713 4.681512 GCCCCGTACTAATAATAATCCCGG 60.682 50.000 0.00 0.00 0.00 5.73
644 714 4.436332 CCCGTACTAATAATAATCCCGGC 58.564 47.826 0.00 0.00 0.00 6.13
645 715 4.081531 CCCGTACTAATAATAATCCCGGCA 60.082 45.833 0.00 0.00 0.00 5.69
646 716 5.481105 CCGTACTAATAATAATCCCGGCAA 58.519 41.667 0.00 0.00 0.00 4.52
647 717 5.933463 CCGTACTAATAATAATCCCGGCAAA 59.067 40.000 0.00 0.00 0.00 3.68
648 718 6.427547 CCGTACTAATAATAATCCCGGCAAAA 59.572 38.462 0.00 0.00 0.00 2.44
649 719 7.360607 CCGTACTAATAATAATCCCGGCAAAAG 60.361 40.741 0.00 0.00 0.00 2.27
657 727 0.972883 TCCCGGCAAAAGAAAATGGG 59.027 50.000 0.00 0.00 36.48 4.00
659 729 0.673333 CCGGCAAAAGAAAATGGGGC 60.673 55.000 0.00 0.00 0.00 5.80
683 753 4.580167 CAGAGAAAAATAATGCGATGGGGA 59.420 41.667 0.00 0.00 0.00 4.81
732 802 4.785453 GCCAACTCAGGGGCCGAG 62.785 72.222 6.87 6.87 44.53 4.63
733 803 4.101448 CCAACTCAGGGGCCGAGG 62.101 72.222 12.31 0.00 34.66 4.63
884 983 4.873129 CGTCCGCTCCATCCCGTG 62.873 72.222 0.00 0.00 0.00 4.94
911 1010 1.522806 GAGTGGACGCCAACACACA 60.523 57.895 0.00 0.00 39.99 3.72
921 1020 1.233950 CCAACACACACAGGCGCATA 61.234 55.000 10.83 0.00 0.00 3.14
922 1021 0.804364 CAACACACACAGGCGCATAT 59.196 50.000 10.83 0.00 0.00 1.78
923 1022 2.006169 CAACACACACAGGCGCATATA 58.994 47.619 10.83 0.00 0.00 0.86
925 1024 3.744238 ACACACACAGGCGCATATATA 57.256 42.857 10.83 0.00 0.00 0.86
926 1025 3.653344 ACACACACAGGCGCATATATAG 58.347 45.455 10.83 0.00 0.00 1.31
927 1026 2.995939 CACACACAGGCGCATATATAGG 59.004 50.000 10.83 0.00 0.00 2.57
928 1027 2.632996 ACACACAGGCGCATATATAGGT 59.367 45.455 10.83 0.00 0.00 3.08
929 1028 3.830178 ACACACAGGCGCATATATAGGTA 59.170 43.478 10.83 0.00 0.00 3.08
933 1032 3.769844 ACAGGCGCATATATAGGTAGCTT 59.230 43.478 10.83 6.44 0.00 3.74
1039 1148 0.447011 GAGGATGTTCGTCGAGTCGT 59.553 55.000 13.12 0.00 0.00 4.34
1040 1149 0.447011 AGGATGTTCGTCGAGTCGTC 59.553 55.000 13.12 6.02 0.00 4.20
1041 1150 0.522915 GGATGTTCGTCGAGTCGTCC 60.523 60.000 13.12 18.26 0.00 4.79
1059 1168 2.800581 CTCGTCCTCGTCCTCGTCG 61.801 68.421 0.00 0.00 38.33 5.12
1161 1270 2.444895 GACCTCATCCTCGGCCCT 60.445 66.667 0.00 0.00 0.00 5.19
1164 1273 3.237741 CTCATCCTCGGCCCTCCC 61.238 72.222 0.00 0.00 0.00 4.30
1190 1299 4.821589 CCTCAACGCCTCCTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
1193 1302 4.697756 CAACGCCTCCTCCGCCAA 62.698 66.667 0.00 0.00 0.00 4.52
1208 1320 1.944024 CGCCAACAACAGAAAGGTACA 59.056 47.619 0.00 0.00 0.00 2.90
1209 1321 2.286772 CGCCAACAACAGAAAGGTACAC 60.287 50.000 0.00 0.00 0.00 2.90
1210 1322 2.685897 GCCAACAACAGAAAGGTACACA 59.314 45.455 0.00 0.00 0.00 3.72
1277 1389 7.523293 TTCATGTTCTTCTATTTCTTGGCAA 57.477 32.000 0.00 0.00 0.00 4.52
1279 1391 7.370383 TCATGTTCTTCTATTTCTTGGCAAAC 58.630 34.615 0.00 0.00 0.00 2.93
1281 1393 7.106439 TGTTCTTCTATTTCTTGGCAAACAA 57.894 32.000 0.00 0.00 37.55 2.83
1282 1394 7.551585 TGTTCTTCTATTTCTTGGCAAACAAA 58.448 30.769 0.00 3.94 38.91 2.83
1284 1396 9.691362 GTTCTTCTATTTCTTGGCAAACAAATA 57.309 29.630 17.02 17.02 38.91 1.40
1292 1404 8.592105 TTTCTTGGCAAACAAATATCTTCTTG 57.408 30.769 0.00 0.00 38.91 3.02
1293 1405 7.523293 TCTTGGCAAACAAATATCTTCTTGA 57.477 32.000 0.00 0.00 38.91 3.02
1294 1406 7.950512 TCTTGGCAAACAAATATCTTCTTGAA 58.049 30.769 0.00 0.00 38.91 2.69
1295 1407 8.587608 TCTTGGCAAACAAATATCTTCTTGAAT 58.412 29.630 0.00 0.00 38.91 2.57
1296 1408 9.211485 CTTGGCAAACAAATATCTTCTTGAATT 57.789 29.630 0.00 0.00 38.91 2.17
1297 1409 9.558396 TTGGCAAACAAATATCTTCTTGAATTT 57.442 25.926 0.00 0.00 35.79 1.82
1573 1688 2.035626 CACCACCACCACATCCCC 59.964 66.667 0.00 0.00 0.00 4.81
1756 1874 4.527583 CTGAGCCGAGCAGAGCCC 62.528 72.222 0.00 0.00 35.39 5.19
1859 1978 4.768659 CGTACTACGTCTAGTGTACTGG 57.231 50.000 0.00 0.00 36.74 4.00
1869 1991 5.051173 CGTCTAGTGTACTGGTAGTATCACG 60.051 48.000 0.00 0.00 37.57 4.35
1944 2082 5.056480 TGAATTAACATGAGATGGGTAGCG 58.944 41.667 0.00 0.00 33.60 4.26
1969 2107 6.244654 AGGGTCGTCTAAAGACTAAGTAAGT 58.755 40.000 8.41 0.00 42.66 2.24
2004 2142 9.897744 GAGTAGTAGAAGAAGAATGATCATCAG 57.102 37.037 9.06 0.00 0.00 2.90
2032 2170 4.100035 AGCATACACAAAGAGGATCGATCA 59.900 41.667 25.93 2.53 42.67 2.92
2035 2177 6.510799 GCATACACAAAGAGGATCGATCAAAG 60.511 42.308 25.93 11.74 42.67 2.77
2052 2194 8.267894 TCGATCAAAGGAGAGGATTTCTATTTT 58.732 33.333 0.00 0.00 35.87 1.82
2085 2227 3.460340 TCCCCAGTTAGTTTTGTCAGGAA 59.540 43.478 0.00 0.00 0.00 3.36
2089 2231 4.881850 CCAGTTAGTTTTGTCAGGAAGTGT 59.118 41.667 0.00 0.00 0.00 3.55
2091 2233 6.458342 CCAGTTAGTTTTGTCAGGAAGTGTTC 60.458 42.308 0.00 0.00 0.00 3.18
2131 2274 7.603024 AGTGTTAATCTTTTCTAAGAAGGGTCG 59.397 37.037 0.00 0.00 43.32 4.79
2132 2275 6.877322 TGTTAATCTTTTCTAAGAAGGGTCGG 59.123 38.462 0.00 0.00 43.32 4.79
2134 2277 4.532314 TCTTTTCTAAGAAGGGTCGGTC 57.468 45.455 0.00 0.00 37.45 4.79
2135 2278 4.158015 TCTTTTCTAAGAAGGGTCGGTCT 58.842 43.478 0.00 0.00 37.45 3.85
2136 2279 4.591924 TCTTTTCTAAGAAGGGTCGGTCTT 59.408 41.667 0.00 0.00 37.45 3.01
2137 2280 4.968971 TTTCTAAGAAGGGTCGGTCTTT 57.031 40.909 0.00 0.00 35.69 2.52
2138 2281 4.968971 TTCTAAGAAGGGTCGGTCTTTT 57.031 40.909 0.00 0.00 35.69 2.27
2139 2282 4.532314 TCTAAGAAGGGTCGGTCTTTTC 57.468 45.455 0.00 0.00 35.69 2.29
2140 2283 4.158015 TCTAAGAAGGGTCGGTCTTTTCT 58.842 43.478 0.00 0.00 35.69 2.52
2141 2284 3.859061 AAGAAGGGTCGGTCTTTTCTT 57.141 42.857 0.00 0.00 34.29 2.52
2142 2285 3.404224 AGAAGGGTCGGTCTTTTCTTC 57.596 47.619 0.00 0.00 0.00 2.87
2143 2286 2.038689 AGAAGGGTCGGTCTTTTCTTCC 59.961 50.000 0.00 0.00 33.25 3.46
2155 2298 2.781681 TTTCTTCCCCGGATGAAGAC 57.218 50.000 26.45 0.00 45.79 3.01
2157 2300 0.323999 TCTTCCCCGGATGAAGACGA 60.324 55.000 24.18 9.89 42.38 4.20
2158 2301 0.535335 CTTCCCCGGATGAAGACGAA 59.465 55.000 22.23 3.43 41.38 3.85
2167 2310 2.420687 GGATGAAGACGAAAGATGGCCT 60.421 50.000 3.32 0.00 0.00 5.19
2168 2311 2.099141 TGAAGACGAAAGATGGCCTG 57.901 50.000 3.32 0.00 0.00 4.85
2201 2344 1.631072 GCCATCGTCGTGTTCATCG 59.369 57.895 0.00 0.00 0.00 3.84
2234 2380 9.352784 CATGTAACCATGGTTGTATTTGTAAAG 57.647 33.333 35.49 13.98 43.95 1.85
2240 2386 7.942341 ACCATGGTTGTATTTGTAAAGAAGAGA 59.058 33.333 13.00 0.00 0.00 3.10
2241 2387 8.792633 CCATGGTTGTATTTGTAAAGAAGAGAA 58.207 33.333 2.57 0.00 0.00 2.87
2256 2402 5.097234 AGAAGAGAATGGAAGGAAGGAAGA 58.903 41.667 0.00 0.00 0.00 2.87
2258 2404 5.850046 AGAGAATGGAAGGAAGGAAGAAA 57.150 39.130 0.00 0.00 0.00 2.52
2336 2482 6.522946 TGGAATTGCATCAAGTTGATTCAAA 58.477 32.000 27.11 16.95 41.74 2.69
2337 2483 6.424509 TGGAATTGCATCAAGTTGATTCAAAC 59.575 34.615 27.11 22.84 41.74 2.93
2339 2485 7.359765 GGAATTGCATCAAGTTGATTCAAACAG 60.360 37.037 27.11 12.25 41.74 3.16
2341 2487 5.522456 TGCATCAAGTTGATTCAAACAGTC 58.478 37.500 15.85 1.38 34.28 3.51
2342 2488 5.300034 TGCATCAAGTTGATTCAAACAGTCT 59.700 36.000 15.85 0.00 34.28 3.24
2343 2489 5.855395 GCATCAAGTTGATTCAAACAGTCTC 59.145 40.000 15.85 0.00 34.28 3.36
2344 2490 6.293845 GCATCAAGTTGATTCAAACAGTCTCT 60.294 38.462 15.85 0.00 34.28 3.10
2346 2492 6.348498 TCAAGTTGATTCAAACAGTCTCTCA 58.652 36.000 0.08 0.00 32.21 3.27
2347 2493 6.994496 TCAAGTTGATTCAAACAGTCTCTCAT 59.006 34.615 0.08 0.00 32.21 2.90
2348 2494 7.172190 TCAAGTTGATTCAAACAGTCTCTCATC 59.828 37.037 0.08 0.00 32.21 2.92
2349 2495 6.767456 AGTTGATTCAAACAGTCTCTCATCT 58.233 36.000 0.00 0.00 32.21 2.90
2350 2496 6.649973 AGTTGATTCAAACAGTCTCTCATCTG 59.350 38.462 0.00 0.00 37.65 2.90
2351 2497 4.934001 TGATTCAAACAGTCTCTCATCTGC 59.066 41.667 0.00 0.00 35.37 4.26
2352 2498 2.951726 TCAAACAGTCTCTCATCTGCG 58.048 47.619 0.00 0.00 35.37 5.18
2377 2529 2.753168 GCCCCCTTGTTTCAGAAACTCT 60.753 50.000 23.57 0.00 41.90 3.24
2391 2543 3.885901 AGAAACTCTTTCCTGTTGCCTTC 59.114 43.478 0.00 0.00 40.54 3.46
2413 2565 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2414 2566 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2415 2567 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
2417 2569 0.877743 TGTGTGTGTGTGTGTGTTGG 59.122 50.000 0.00 0.00 0.00 3.77
2418 2570 0.170116 GTGTGTGTGTGTGTGTTGGG 59.830 55.000 0.00 0.00 0.00 4.12
2420 2572 1.303643 TGTGTGTGTGTGTTGGGCA 60.304 52.632 0.00 0.00 0.00 5.36
2421 2573 1.311651 TGTGTGTGTGTGTTGGGCAG 61.312 55.000 0.00 0.00 0.00 4.85
2422 2574 1.001517 TGTGTGTGTGTTGGGCAGT 60.002 52.632 0.00 0.00 0.00 4.40
2423 2575 0.610509 TGTGTGTGTGTTGGGCAGTT 60.611 50.000 0.00 0.00 0.00 3.16
2426 2578 0.381801 GTGTGTGTTGGGCAGTTGAG 59.618 55.000 0.00 0.00 0.00 3.02
2427 2579 0.254462 TGTGTGTTGGGCAGTTGAGA 59.746 50.000 0.00 0.00 0.00 3.27
2428 2580 1.133823 TGTGTGTTGGGCAGTTGAGAT 60.134 47.619 0.00 0.00 0.00 2.75
2429 2581 1.537202 GTGTGTTGGGCAGTTGAGATC 59.463 52.381 0.00 0.00 0.00 2.75
2430 2582 1.142667 TGTGTTGGGCAGTTGAGATCA 59.857 47.619 0.00 0.00 0.00 2.92
2431 2583 2.229792 GTGTTGGGCAGTTGAGATCAA 58.770 47.619 0.00 0.00 0.00 2.57
2432 2584 2.227388 GTGTTGGGCAGTTGAGATCAAG 59.773 50.000 0.00 0.00 36.39 3.02
2433 2585 1.815003 GTTGGGCAGTTGAGATCAAGG 59.185 52.381 0.00 0.00 36.39 3.61
2434 2586 0.329261 TGGGCAGTTGAGATCAAGGG 59.671 55.000 0.00 0.00 36.39 3.95
2441 2593 3.201708 CAGTTGAGATCAAGGGAGGGAAT 59.798 47.826 0.00 0.00 36.39 3.01
2451 2605 3.170360 GGAGGGAATCCGTTTGGTC 57.830 57.895 0.00 0.00 38.67 4.02
2454 2608 1.278127 GAGGGAATCCGTTTGGTCTCA 59.722 52.381 0.00 0.00 38.33 3.27
2462 2616 4.074627 TCCGTTTGGTCTCATTGTTGTA 57.925 40.909 0.00 0.00 36.30 2.41
2463 2617 4.452825 TCCGTTTGGTCTCATTGTTGTAA 58.547 39.130 0.00 0.00 36.30 2.41
2465 2619 4.035792 CCGTTTGGTCTCATTGTTGTAACA 59.964 41.667 0.00 0.00 37.08 2.41
2467 2621 8.812977 TCCGTTTGGTCTCATTGTTGTAACAAT 61.813 37.037 15.26 15.26 46.63 2.71
2534 2701 4.373116 GGCGGTGGTTGCGAGAGA 62.373 66.667 0.00 0.00 0.00 3.10
2535 2702 2.811317 GCGGTGGTTGCGAGAGAG 60.811 66.667 0.00 0.00 0.00 3.20
2536 2703 2.811317 CGGTGGTTGCGAGAGAGC 60.811 66.667 0.00 0.00 37.71 4.09
2537 2704 2.343758 GGTGGTTGCGAGAGAGCA 59.656 61.111 0.00 0.00 46.54 4.26
2629 2798 2.954684 CGGCCAGGGTGAGCTGTTA 61.955 63.158 2.24 0.00 0.00 2.41
2639 2808 1.798813 GTGAGCTGTTAGTTGGTTCGG 59.201 52.381 0.00 0.00 0.00 4.30
2660 2829 2.828549 CGATTTTCCCCGGGCAGG 60.829 66.667 17.73 0.68 40.63 4.85
2661 2830 3.147595 GATTTTCCCCGGGCAGGC 61.148 66.667 17.73 0.00 39.21 4.85
2662 2831 3.955543 GATTTTCCCCGGGCAGGCA 62.956 63.158 17.73 0.00 39.21 4.75
2663 2832 4.986708 TTTTCCCCGGGCAGGCAC 62.987 66.667 17.73 0.00 39.21 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.875972 AGTCTTTAAGGACCATCTATGTGT 57.124 37.500 13.64 0.00 36.95 3.72
1 2 7.711339 GGTTAGTCTTTAAGGACCATCTATGTG 59.289 40.741 13.64 0.00 36.95 3.21
2 3 7.402071 TGGTTAGTCTTTAAGGACCATCTATGT 59.598 37.037 13.64 0.00 36.95 2.29
3 4 7.792032 TGGTTAGTCTTTAAGGACCATCTATG 58.208 38.462 13.64 0.00 36.95 2.23
4 5 7.071321 CCTGGTTAGTCTTTAAGGACCATCTAT 59.929 40.741 13.64 0.00 36.65 1.98
5 6 6.383147 CCTGGTTAGTCTTTAAGGACCATCTA 59.617 42.308 13.64 0.00 36.65 1.98
6 7 5.189934 CCTGGTTAGTCTTTAAGGACCATCT 59.810 44.000 13.64 0.00 36.65 2.90
7 8 5.429130 CCTGGTTAGTCTTTAAGGACCATC 58.571 45.833 13.64 2.93 36.65 3.51
8 9 4.227527 CCCTGGTTAGTCTTTAAGGACCAT 59.772 45.833 13.64 0.00 36.65 3.55
9 10 3.585732 CCCTGGTTAGTCTTTAAGGACCA 59.414 47.826 13.64 5.09 36.95 4.02
10 11 3.842436 TCCCTGGTTAGTCTTTAAGGACC 59.158 47.826 13.64 0.53 36.95 4.46
11 12 5.695424 ATCCCTGGTTAGTCTTTAAGGAC 57.305 43.478 9.61 9.61 36.56 3.85
12 13 8.272173 CAATAATCCCTGGTTAGTCTTTAAGGA 58.728 37.037 0.00 0.00 0.00 3.36
13 14 8.053355 ACAATAATCCCTGGTTAGTCTTTAAGG 58.947 37.037 0.00 0.00 0.00 2.69
14 15 9.110502 GACAATAATCCCTGGTTAGTCTTTAAG 57.889 37.037 0.00 0.00 0.00 1.85
15 16 8.832735 AGACAATAATCCCTGGTTAGTCTTTAA 58.167 33.333 0.00 0.00 30.32 1.52
16 17 8.388656 AGACAATAATCCCTGGTTAGTCTTTA 57.611 34.615 0.00 0.00 30.32 1.85
17 18 7.272144 AGACAATAATCCCTGGTTAGTCTTT 57.728 36.000 0.00 0.00 30.32 2.52
18 19 6.893020 AGACAATAATCCCTGGTTAGTCTT 57.107 37.500 0.00 0.00 30.32 3.01
19 20 6.443849 TCAAGACAATAATCCCTGGTTAGTCT 59.556 38.462 0.00 0.00 35.53 3.24
20 21 6.650120 TCAAGACAATAATCCCTGGTTAGTC 58.350 40.000 0.00 0.00 0.00 2.59
21 22 6.443849 TCTCAAGACAATAATCCCTGGTTAGT 59.556 38.462 0.00 0.00 0.00 2.24
22 23 6.763610 GTCTCAAGACAATAATCCCTGGTTAG 59.236 42.308 5.28 0.00 44.18 2.34
23 24 6.352737 GGTCTCAAGACAATAATCCCTGGTTA 60.353 42.308 11.99 0.00 46.47 2.85
24 25 5.501156 GTCTCAAGACAATAATCCCTGGTT 58.499 41.667 5.28 0.00 44.18 3.67
25 26 4.080299 GGTCTCAAGACAATAATCCCTGGT 60.080 45.833 11.99 0.00 46.47 4.00
26 27 4.455606 GGTCTCAAGACAATAATCCCTGG 58.544 47.826 11.99 0.00 46.47 4.45
27 28 4.455606 GGGTCTCAAGACAATAATCCCTG 58.544 47.826 11.99 0.00 46.47 4.45
28 29 3.134804 CGGGTCTCAAGACAATAATCCCT 59.865 47.826 11.99 0.00 46.47 4.20
29 30 3.134081 TCGGGTCTCAAGACAATAATCCC 59.866 47.826 11.99 1.65 46.47 3.85
30 31 4.402056 TCGGGTCTCAAGACAATAATCC 57.598 45.455 11.99 2.35 46.47 3.01
31 32 5.875359 AGTTTCGGGTCTCAAGACAATAATC 59.125 40.000 11.99 2.79 46.47 1.75
32 33 5.643777 CAGTTTCGGGTCTCAAGACAATAAT 59.356 40.000 11.99 0.00 46.47 1.28
33 34 4.994852 CAGTTTCGGGTCTCAAGACAATAA 59.005 41.667 11.99 0.43 46.47 1.40
34 35 4.039973 ACAGTTTCGGGTCTCAAGACAATA 59.960 41.667 11.99 0.00 46.47 1.90
35 36 3.181454 ACAGTTTCGGGTCTCAAGACAAT 60.181 43.478 11.99 0.00 46.47 2.71
36 37 2.169769 ACAGTTTCGGGTCTCAAGACAA 59.830 45.455 11.99 0.00 46.47 3.18
37 38 1.760613 ACAGTTTCGGGTCTCAAGACA 59.239 47.619 11.99 0.00 46.47 3.41
38 39 2.528041 ACAGTTTCGGGTCTCAAGAC 57.472 50.000 1.37 1.37 44.04 3.01
39 40 2.298163 GGTACAGTTTCGGGTCTCAAGA 59.702 50.000 0.00 0.00 0.00 3.02
40 41 2.685100 GGTACAGTTTCGGGTCTCAAG 58.315 52.381 0.00 0.00 0.00 3.02
41 42 1.000060 CGGTACAGTTTCGGGTCTCAA 60.000 52.381 0.00 0.00 0.00 3.02
42 43 0.599558 CGGTACAGTTTCGGGTCTCA 59.400 55.000 0.00 0.00 0.00 3.27
43 44 0.108945 CCGGTACAGTTTCGGGTCTC 60.109 60.000 0.00 0.00 40.07 3.36
44 45 0.540365 TCCGGTACAGTTTCGGGTCT 60.540 55.000 0.00 0.00 43.54 3.85
45 46 0.318120 TTCCGGTACAGTTTCGGGTC 59.682 55.000 0.00 0.00 43.54 4.46
46 47 0.033920 GTTCCGGTACAGTTTCGGGT 59.966 55.000 6.31 0.00 43.54 5.28
47 48 0.319405 AGTTCCGGTACAGTTTCGGG 59.681 55.000 14.14 5.43 43.54 5.14
48 49 3.302365 TTAGTTCCGGTACAGTTTCGG 57.698 47.619 14.14 7.68 44.59 4.30
49 50 6.095377 ACTTATTAGTTCCGGTACAGTTTCG 58.905 40.000 14.14 0.61 0.00 3.46
50 51 8.246871 AGTACTTATTAGTTCCGGTACAGTTTC 58.753 37.037 14.14 5.13 35.78 2.78
51 52 8.127150 AGTACTTATTAGTTCCGGTACAGTTT 57.873 34.615 14.14 0.00 35.78 2.66
52 53 7.709149 AGTACTTATTAGTTCCGGTACAGTT 57.291 36.000 14.14 0.00 35.78 3.16
53 54 7.148000 GGAAGTACTTATTAGTTCCGGTACAGT 60.148 40.741 14.14 9.77 46.14 3.55
54 55 7.199078 GGAAGTACTTATTAGTTCCGGTACAG 58.801 42.308 14.14 4.10 46.14 2.74
55 56 7.100458 GGAAGTACTTATTAGTTCCGGTACA 57.900 40.000 14.14 0.00 46.14 2.90
62 63 7.066766 TGAGACGGAGGAAGTACTTATTAGTTC 59.933 40.741 8.42 2.18 38.85 3.01
63 64 6.888632 TGAGACGGAGGAAGTACTTATTAGTT 59.111 38.462 8.42 0.00 35.78 2.24
64 65 6.421485 TGAGACGGAGGAAGTACTTATTAGT 58.579 40.000 8.42 5.59 38.44 2.24
65 66 6.939132 TGAGACGGAGGAAGTACTTATTAG 57.061 41.667 8.42 2.35 0.00 1.73
66 67 8.985315 TTATGAGACGGAGGAAGTACTTATTA 57.015 34.615 8.42 0.00 0.00 0.98
67 68 7.893124 TTATGAGACGGAGGAAGTACTTATT 57.107 36.000 8.42 0.00 0.00 1.40
68 69 7.506261 ACATTATGAGACGGAGGAAGTACTTAT 59.494 37.037 8.42 0.00 0.00 1.73
69 70 6.832384 ACATTATGAGACGGAGGAAGTACTTA 59.168 38.462 8.42 0.00 0.00 2.24
70 71 5.657302 ACATTATGAGACGGAGGAAGTACTT 59.343 40.000 8.13 8.13 0.00 2.24
71 72 5.202004 ACATTATGAGACGGAGGAAGTACT 58.798 41.667 0.00 0.00 0.00 2.73
72 73 5.517322 ACATTATGAGACGGAGGAAGTAC 57.483 43.478 0.00 0.00 0.00 2.73
73 74 6.832384 ACTTACATTATGAGACGGAGGAAGTA 59.168 38.462 0.00 0.00 0.00 2.24
74 75 5.657302 ACTTACATTATGAGACGGAGGAAGT 59.343 40.000 0.00 0.00 0.00 3.01
75 76 6.150396 ACTTACATTATGAGACGGAGGAAG 57.850 41.667 0.00 0.00 0.00 3.46
76 77 6.238566 CGTACTTACATTATGAGACGGAGGAA 60.239 42.308 0.00 0.00 0.00 3.36
77 78 5.237996 CGTACTTACATTATGAGACGGAGGA 59.762 44.000 0.00 0.00 0.00 3.71
78 79 5.008415 ACGTACTTACATTATGAGACGGAGG 59.992 44.000 0.00 0.00 33.54 4.30
79 80 6.057627 ACGTACTTACATTATGAGACGGAG 57.942 41.667 0.00 0.00 33.54 4.63
80 81 6.441093 AACGTACTTACATTATGAGACGGA 57.559 37.500 0.00 0.00 33.54 4.69
81 82 6.971184 AGAAACGTACTTACATTATGAGACGG 59.029 38.462 0.00 0.00 33.54 4.79
82 83 7.695201 TCAGAAACGTACTTACATTATGAGACG 59.305 37.037 0.00 3.78 35.30 4.18
83 84 8.906636 TCAGAAACGTACTTACATTATGAGAC 57.093 34.615 0.00 0.00 0.00 3.36
84 85 9.917129 TTTCAGAAACGTACTTACATTATGAGA 57.083 29.630 0.00 0.00 30.21 3.27
85 86 9.953825 GTTTCAGAAACGTACTTACATTATGAG 57.046 33.333 10.30 0.00 30.21 2.90
86 87 9.701098 AGTTTCAGAAACGTACTTACATTATGA 57.299 29.630 18.43 0.00 45.88 2.15
91 92 9.617975 GTAGTAGTTTCAGAAACGTACTTACAT 57.382 33.333 26.29 14.70 45.88 2.29
92 93 8.620416 TGTAGTAGTTTCAGAAACGTACTTACA 58.380 33.333 26.29 23.63 45.88 2.41
93 94 8.896826 GTGTAGTAGTTTCAGAAACGTACTTAC 58.103 37.037 26.29 22.68 45.88 2.34
94 95 8.840321 AGTGTAGTAGTTTCAGAAACGTACTTA 58.160 33.333 26.29 18.94 45.88 2.24
95 96 7.710896 AGTGTAGTAGTTTCAGAAACGTACTT 58.289 34.615 26.29 16.74 45.88 2.24
96 97 7.269477 AGTGTAGTAGTTTCAGAAACGTACT 57.731 36.000 25.36 25.36 45.88 2.73
97 98 8.286097 ACTAGTGTAGTAGTTTCAGAAACGTAC 58.714 37.037 18.43 19.07 45.88 3.67
98 99 8.383318 ACTAGTGTAGTAGTTTCAGAAACGTA 57.617 34.615 18.43 10.08 45.88 3.57
99 100 7.269477 ACTAGTGTAGTAGTTTCAGAAACGT 57.731 36.000 18.43 10.94 45.88 3.99
100 101 9.111702 GTTACTAGTGTAGTAGTTTCAGAAACG 57.888 37.037 18.43 4.90 41.84 3.60
101 102 9.956720 TGTTACTAGTGTAGTAGTTTCAGAAAC 57.043 33.333 17.11 17.11 41.84 2.78
106 107 9.533253 GGTTTTGTTACTAGTGTAGTAGTTTCA 57.467 33.333 5.39 3.21 41.84 2.69
107 108 8.694394 CGGTTTTGTTACTAGTGTAGTAGTTTC 58.306 37.037 5.39 1.04 41.84 2.78
108 109 8.197439 ACGGTTTTGTTACTAGTGTAGTAGTTT 58.803 33.333 5.39 0.00 41.84 2.66
109 110 7.716612 ACGGTTTTGTTACTAGTGTAGTAGTT 58.283 34.615 5.39 0.00 41.84 2.24
110 111 7.277174 ACGGTTTTGTTACTAGTGTAGTAGT 57.723 36.000 5.39 4.90 41.84 2.73
111 112 8.078596 AGAACGGTTTTGTTACTAGTGTAGTAG 58.921 37.037 5.39 0.00 41.84 2.57
112 113 7.940850 AGAACGGTTTTGTTACTAGTGTAGTA 58.059 34.615 5.39 0.00 40.14 1.82
113 114 6.809869 AGAACGGTTTTGTTACTAGTGTAGT 58.190 36.000 5.39 0.00 42.68 2.73
114 115 7.704789 AAGAACGGTTTTGTTACTAGTGTAG 57.295 36.000 5.39 0.00 30.75 2.74
115 116 8.194104 TGTAAGAACGGTTTTGTTACTAGTGTA 58.806 33.333 5.39 0.00 30.75 2.90
116 117 7.041107 TGTAAGAACGGTTTTGTTACTAGTGT 58.959 34.615 5.39 0.00 30.75 3.55
117 118 7.467557 TGTAAGAACGGTTTTGTTACTAGTG 57.532 36.000 5.39 0.00 30.75 2.74
118 119 8.667076 AATGTAAGAACGGTTTTGTTACTAGT 57.333 30.769 0.00 0.00 30.75 2.57
119 120 9.940166 AAAATGTAAGAACGGTTTTGTTACTAG 57.060 29.630 16.19 0.00 29.89 2.57
121 122 9.940166 CTAAAATGTAAGAACGGTTTTGTTACT 57.060 29.630 16.19 0.00 32.05 2.24
122 123 9.172820 CCTAAAATGTAAGAACGGTTTTGTTAC 57.827 33.333 0.00 5.06 32.05 2.50
123 124 9.118300 TCCTAAAATGTAAGAACGGTTTTGTTA 57.882 29.630 0.00 0.00 32.05 2.41
124 125 7.916977 GTCCTAAAATGTAAGAACGGTTTTGTT 59.083 33.333 0.00 0.00 32.05 2.83
125 126 7.067251 TGTCCTAAAATGTAAGAACGGTTTTGT 59.933 33.333 0.00 0.00 32.05 2.83
126 127 7.419204 TGTCCTAAAATGTAAGAACGGTTTTG 58.581 34.615 0.00 0.00 32.05 2.44
127 128 7.255346 CCTGTCCTAAAATGTAAGAACGGTTTT 60.255 37.037 0.00 0.00 33.39 2.43
128 129 6.206048 CCTGTCCTAAAATGTAAGAACGGTTT 59.794 38.462 0.00 0.00 0.00 3.27
129 130 5.704053 CCTGTCCTAAAATGTAAGAACGGTT 59.296 40.000 0.00 0.00 0.00 4.44
130 131 5.243207 CCTGTCCTAAAATGTAAGAACGGT 58.757 41.667 0.00 0.00 0.00 4.83
131 132 4.634443 CCCTGTCCTAAAATGTAAGAACGG 59.366 45.833 0.00 0.00 0.00 4.44
132 133 5.484715 TCCCTGTCCTAAAATGTAAGAACG 58.515 41.667 0.00 0.00 0.00 3.95
133 134 6.473758 ACTCCCTGTCCTAAAATGTAAGAAC 58.526 40.000 0.00 0.00 0.00 3.01
134 135 6.697641 ACTCCCTGTCCTAAAATGTAAGAA 57.302 37.500 0.00 0.00 0.00 2.52
135 136 7.186972 TCTACTCCCTGTCCTAAAATGTAAGA 58.813 38.462 0.00 0.00 0.00 2.10
136 137 7.419711 TCTACTCCCTGTCCTAAAATGTAAG 57.580 40.000 0.00 0.00 0.00 2.34
137 138 7.989947 ATCTACTCCCTGTCCTAAAATGTAA 57.010 36.000 0.00 0.00 0.00 2.41
138 139 7.989947 AATCTACTCCCTGTCCTAAAATGTA 57.010 36.000 0.00 0.00 0.00 2.29
139 140 6.893020 AATCTACTCCCTGTCCTAAAATGT 57.107 37.500 0.00 0.00 0.00 2.71
140 141 8.024145 AGTAATCTACTCCCTGTCCTAAAATG 57.976 38.462 0.00 0.00 32.47 2.32
141 142 8.625467 AAGTAATCTACTCCCTGTCCTAAAAT 57.375 34.615 0.00 0.00 38.26 1.82
142 143 8.445361 AAAGTAATCTACTCCCTGTCCTAAAA 57.555 34.615 0.00 0.00 38.26 1.52
143 144 8.445361 AAAAGTAATCTACTCCCTGTCCTAAA 57.555 34.615 0.00 0.00 38.26 1.85
144 145 7.125356 GGAAAAGTAATCTACTCCCTGTCCTAA 59.875 40.741 0.00 0.00 38.26 2.69
145 146 6.610425 GGAAAAGTAATCTACTCCCTGTCCTA 59.390 42.308 0.00 0.00 38.26 2.94
146 147 5.425862 GGAAAAGTAATCTACTCCCTGTCCT 59.574 44.000 0.00 0.00 38.26 3.85
147 148 5.425862 AGGAAAAGTAATCTACTCCCTGTCC 59.574 44.000 0.00 0.00 38.26 4.02
148 149 6.342111 CAGGAAAAGTAATCTACTCCCTGTC 58.658 44.000 14.98 0.00 41.14 3.51
149 150 5.785940 ACAGGAAAAGTAATCTACTCCCTGT 59.214 40.000 19.23 19.23 46.78 4.00
150 151 6.301169 ACAGGAAAAGTAATCTACTCCCTG 57.699 41.667 18.43 18.43 45.71 4.45
151 152 6.954352 AACAGGAAAAGTAATCTACTCCCT 57.046 37.500 0.00 0.00 38.26 4.20
152 153 7.849160 AGTAACAGGAAAAGTAATCTACTCCC 58.151 38.462 0.00 0.00 38.26 4.30
162 163 9.799106 ACTACTACACTAGTAACAGGAAAAGTA 57.201 33.333 0.00 0.00 40.49 2.24
163 164 8.703378 ACTACTACACTAGTAACAGGAAAAGT 57.297 34.615 0.00 0.00 40.49 2.66
164 165 9.978044 AAACTACTACACTAGTAACAGGAAAAG 57.022 33.333 0.00 0.00 40.49 2.27
165 166 9.971922 GAAACTACTACACTAGTAACAGGAAAA 57.028 33.333 0.00 0.00 40.49 2.29
166 167 9.135189 TGAAACTACTACACTAGTAACAGGAAA 57.865 33.333 0.00 0.00 40.49 3.13
167 168 8.696043 TGAAACTACTACACTAGTAACAGGAA 57.304 34.615 0.00 0.00 40.49 3.36
168 169 8.159447 TCTGAAACTACTACACTAGTAACAGGA 58.841 37.037 0.00 0.00 40.49 3.86
169 170 8.332996 TCTGAAACTACTACACTAGTAACAGG 57.667 38.462 0.00 0.00 40.49 4.00
171 172 9.956720 GTTTCTGAAACTACTACACTAGTAACA 57.043 33.333 22.55 0.00 40.49 2.41
172 173 9.956720 TGTTTCTGAAACTACTACACTAGTAAC 57.043 33.333 27.75 3.06 40.49 2.50
175 176 9.880157 TTTTGTTTCTGAAACTACTACACTAGT 57.120 29.630 27.75 0.00 41.90 2.57
177 178 9.321562 CCTTTTGTTTCTGAAACTACTACACTA 57.678 33.333 27.75 7.30 41.90 2.74
178 179 8.044908 TCCTTTTGTTTCTGAAACTACTACACT 58.955 33.333 27.75 0.00 41.90 3.55
179 180 8.205131 TCCTTTTGTTTCTGAAACTACTACAC 57.795 34.615 27.75 6.29 41.90 2.90
180 181 7.012044 GCTCCTTTTGTTTCTGAAACTACTACA 59.988 37.037 27.75 9.94 41.90 2.74
181 182 7.353497 GCTCCTTTTGTTTCTGAAACTACTAC 58.647 38.462 27.75 7.60 41.90 2.73
182 183 6.202188 CGCTCCTTTTGTTTCTGAAACTACTA 59.798 38.462 27.75 13.76 41.90 1.82
183 184 5.007724 CGCTCCTTTTGTTTCTGAAACTACT 59.992 40.000 27.75 0.00 41.90 2.57
184 185 5.007332 TCGCTCCTTTTGTTTCTGAAACTAC 59.993 40.000 27.75 8.92 41.90 2.73
185 186 5.120399 TCGCTCCTTTTGTTTCTGAAACTA 58.880 37.500 27.75 20.47 41.90 2.24
186 187 3.945285 TCGCTCCTTTTGTTTCTGAAACT 59.055 39.130 27.75 0.00 41.90 2.66
187 188 4.287238 TCGCTCCTTTTGTTTCTGAAAC 57.713 40.909 22.94 22.94 41.73 2.78
188 189 4.023193 GGATCGCTCCTTTTGTTTCTGAAA 60.023 41.667 0.00 0.00 38.65 2.69
189 190 3.502211 GGATCGCTCCTTTTGTTTCTGAA 59.498 43.478 0.00 0.00 38.65 3.02
190 191 3.074412 GGATCGCTCCTTTTGTTTCTGA 58.926 45.455 0.00 0.00 38.65 3.27
191 192 2.813754 TGGATCGCTCCTTTTGTTTCTG 59.186 45.455 6.88 0.00 42.59 3.02
192 193 3.077359 CTGGATCGCTCCTTTTGTTTCT 58.923 45.455 6.88 0.00 42.59 2.52
193 194 2.414691 GCTGGATCGCTCCTTTTGTTTC 60.415 50.000 6.88 0.00 42.59 2.78
194 195 1.541588 GCTGGATCGCTCCTTTTGTTT 59.458 47.619 6.88 0.00 42.59 2.83
195 196 1.168714 GCTGGATCGCTCCTTTTGTT 58.831 50.000 6.88 0.00 42.59 2.83
196 197 0.036732 TGCTGGATCGCTCCTTTTGT 59.963 50.000 6.88 0.00 42.59 2.83
197 198 1.131883 CTTGCTGGATCGCTCCTTTTG 59.868 52.381 6.88 0.00 42.59 2.44
198 199 1.003580 TCTTGCTGGATCGCTCCTTTT 59.996 47.619 6.88 0.00 42.59 2.27
199 200 0.615331 TCTTGCTGGATCGCTCCTTT 59.385 50.000 6.88 0.00 42.59 3.11
200 201 0.615331 TTCTTGCTGGATCGCTCCTT 59.385 50.000 6.88 0.00 42.59 3.36
201 202 0.615331 TTTCTTGCTGGATCGCTCCT 59.385 50.000 6.88 0.00 42.59 3.69
202 203 1.453155 TTTTCTTGCTGGATCGCTCC 58.547 50.000 0.00 0.00 42.45 4.70
203 204 2.032675 GGATTTTCTTGCTGGATCGCTC 59.967 50.000 0.00 0.00 0.00 5.03
204 205 2.019984 GGATTTTCTTGCTGGATCGCT 58.980 47.619 0.00 0.00 0.00 4.93
205 206 1.745087 TGGATTTTCTTGCTGGATCGC 59.255 47.619 0.00 0.00 0.00 4.58
206 207 3.303593 CGATGGATTTTCTTGCTGGATCG 60.304 47.826 0.00 0.00 0.00 3.69
207 208 3.629398 ACGATGGATTTTCTTGCTGGATC 59.371 43.478 0.00 0.00 0.00 3.36
208 209 3.624777 ACGATGGATTTTCTTGCTGGAT 58.375 40.909 0.00 0.00 0.00 3.41
209 210 3.071874 ACGATGGATTTTCTTGCTGGA 57.928 42.857 0.00 0.00 0.00 3.86
210 211 3.855689 AACGATGGATTTTCTTGCTGG 57.144 42.857 0.00 0.00 0.00 4.85
211 212 5.942872 AGTAAACGATGGATTTTCTTGCTG 58.057 37.500 0.00 0.00 0.00 4.41
212 213 7.865706 ATAGTAAACGATGGATTTTCTTGCT 57.134 32.000 0.00 0.00 0.00 3.91
230 231 9.673454 CTGCGTGTTATTGTGTCTATATAGTAA 57.327 33.333 9.58 2.68 0.00 2.24
231 232 8.294577 CCTGCGTGTTATTGTGTCTATATAGTA 58.705 37.037 9.58 0.00 0.00 1.82
232 233 7.145985 CCTGCGTGTTATTGTGTCTATATAGT 58.854 38.462 9.58 0.00 0.00 2.12
233 234 6.586463 CCCTGCGTGTTATTGTGTCTATATAG 59.414 42.308 3.10 3.10 0.00 1.31
234 235 6.041182 ACCCTGCGTGTTATTGTGTCTATATA 59.959 38.462 0.00 0.00 0.00 0.86
235 236 5.163343 ACCCTGCGTGTTATTGTGTCTATAT 60.163 40.000 0.00 0.00 0.00 0.86
236 237 4.160814 ACCCTGCGTGTTATTGTGTCTATA 59.839 41.667 0.00 0.00 0.00 1.31
237 238 3.055385 ACCCTGCGTGTTATTGTGTCTAT 60.055 43.478 0.00 0.00 0.00 1.98
238 239 2.300723 ACCCTGCGTGTTATTGTGTCTA 59.699 45.455 0.00 0.00 0.00 2.59
239 240 1.071699 ACCCTGCGTGTTATTGTGTCT 59.928 47.619 0.00 0.00 0.00 3.41
240 241 1.463444 GACCCTGCGTGTTATTGTGTC 59.537 52.381 0.00 0.00 0.00 3.67
241 242 1.202710 TGACCCTGCGTGTTATTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
242 243 1.518325 TGACCCTGCGTGTTATTGTG 58.482 50.000 0.00 0.00 0.00 3.33
243 244 2.264005 TTGACCCTGCGTGTTATTGT 57.736 45.000 0.00 0.00 0.00 2.71
244 245 3.848272 AATTGACCCTGCGTGTTATTG 57.152 42.857 0.00 0.00 0.00 1.90
245 246 4.585879 ACTAATTGACCCTGCGTGTTATT 58.414 39.130 0.00 0.00 0.00 1.40
246 247 4.216411 ACTAATTGACCCTGCGTGTTAT 57.784 40.909 0.00 0.00 0.00 1.89
247 248 3.688694 ACTAATTGACCCTGCGTGTTA 57.311 42.857 0.00 0.00 0.00 2.41
248 249 2.561478 ACTAATTGACCCTGCGTGTT 57.439 45.000 0.00 0.00 0.00 3.32
249 250 2.354403 GGTACTAATTGACCCTGCGTGT 60.354 50.000 0.00 0.00 0.00 4.49
250 251 2.277084 GGTACTAATTGACCCTGCGTG 58.723 52.381 0.00 0.00 0.00 5.34
251 252 1.903860 TGGTACTAATTGACCCTGCGT 59.096 47.619 0.00 0.00 34.58 5.24
252 253 2.684001 TGGTACTAATTGACCCTGCG 57.316 50.000 0.00 0.00 34.58 5.18
253 254 5.865085 TGATATGGTACTAATTGACCCTGC 58.135 41.667 0.00 0.00 34.58 4.85
254 255 7.604164 GTCATGATATGGTACTAATTGACCCTG 59.396 40.741 0.00 0.00 34.58 4.45
255 256 7.292356 TGTCATGATATGGTACTAATTGACCCT 59.708 37.037 0.00 0.00 34.58 4.34
256 257 7.450074 TGTCATGATATGGTACTAATTGACCC 58.550 38.462 0.00 0.00 34.58 4.46
257 258 8.367911 TCTGTCATGATATGGTACTAATTGACC 58.632 37.037 0.00 0.00 36.17 4.02
258 259 9.197694 GTCTGTCATGATATGGTACTAATTGAC 57.802 37.037 0.00 0.00 33.37 3.18
259 260 8.923270 TGTCTGTCATGATATGGTACTAATTGA 58.077 33.333 0.00 0.00 0.00 2.57
260 261 9.716531 ATGTCTGTCATGATATGGTACTAATTG 57.283 33.333 0.00 0.00 35.19 2.32
265 266 9.935241 GAAATATGTCTGTCATGATATGGTACT 57.065 33.333 0.00 0.00 37.91 2.73
269 270 7.599998 TCACGAAATATGTCTGTCATGATATGG 59.400 37.037 0.00 0.00 37.91 2.74
278 279 7.898309 GTGTTAACATCACGAAATATGTCTGTC 59.102 37.037 12.26 0.00 35.30 3.51
281 282 7.386573 TGTGTGTTAACATCACGAAATATGTCT 59.613 33.333 23.77 0.00 38.92 3.41
282 283 7.477422 GTGTGTGTTAACATCACGAAATATGTC 59.523 37.037 23.77 6.52 38.92 3.06
326 335 0.031721 CTTATCACGGGCCTACGACC 59.968 60.000 8.49 0.00 37.61 4.79
331 340 2.110188 AGAGATCCTTATCACGGGCCTA 59.890 50.000 0.84 0.00 34.28 3.93
333 342 1.343069 AGAGATCCTTATCACGGGCC 58.657 55.000 0.00 0.00 34.28 5.80
345 354 6.803154 TTTCTTTTCCTTCGAAAGAGATCC 57.197 37.500 0.00 0.00 42.27 3.36
377 398 0.606944 CCCGTGGGAATCAAACCGAA 60.607 55.000 0.00 0.00 37.50 4.30
379 400 3.585856 CCCGTGGGAATCAAACCG 58.414 61.111 0.00 0.00 37.50 4.44
389 410 1.378514 CCAGATTGTTCCCCGTGGG 60.379 63.158 0.00 0.00 46.11 4.61
390 411 0.392998 CTCCAGATTGTTCCCCGTGG 60.393 60.000 0.00 0.00 0.00 4.94
391 412 0.613260 TCTCCAGATTGTTCCCCGTG 59.387 55.000 0.00 0.00 0.00 4.94
392 413 0.613777 GTCTCCAGATTGTTCCCCGT 59.386 55.000 0.00 0.00 0.00 5.28
465 511 4.087892 CAGTGGAGGTGGGAGCCG 62.088 72.222 0.00 0.00 0.00 5.52
466 512 3.721706 CCAGTGGAGGTGGGAGCC 61.722 72.222 1.68 0.00 0.00 4.70
467 513 4.416738 GCCAGTGGAGGTGGGAGC 62.417 72.222 15.20 0.00 35.39 4.70
589 659 1.374758 CTTCTGACGAGTGGGCCAC 60.375 63.158 29.32 29.32 34.10 5.01
590 660 1.118965 TTCTTCTGACGAGTGGGCCA 61.119 55.000 0.00 0.00 0.00 5.36
593 663 6.743575 ATTATTTTTCTTCTGACGAGTGGG 57.256 37.500 0.00 0.00 0.00 4.61
596 666 6.237861 GCGCTATTATTTTTCTTCTGACGAGT 60.238 38.462 0.00 0.00 0.00 4.18
598 668 5.006358 GGCGCTATTATTTTTCTTCTGACGA 59.994 40.000 7.64 0.00 0.00 4.20
599 669 5.198274 GGCGCTATTATTTTTCTTCTGACG 58.802 41.667 7.64 0.00 0.00 4.35
600 670 5.505819 GGGGCGCTATTATTTTTCTTCTGAC 60.506 44.000 7.64 0.00 0.00 3.51
603 673 3.564225 CGGGGCGCTATTATTTTTCTTCT 59.436 43.478 7.64 0.00 0.00 2.85
604 674 3.314357 ACGGGGCGCTATTATTTTTCTTC 59.686 43.478 7.64 0.00 0.00 2.87
607 677 3.811497 AGTACGGGGCGCTATTATTTTTC 59.189 43.478 7.64 0.00 0.00 2.29
610 680 4.605640 TTAGTACGGGGCGCTATTATTT 57.394 40.909 7.64 0.00 0.00 1.40
613 683 5.920193 ATTATTAGTACGGGGCGCTATTA 57.080 39.130 7.64 0.00 0.00 0.98
616 686 5.163519 GGATTATTATTAGTACGGGGCGCTA 60.164 44.000 7.64 0.00 0.00 4.26
617 687 4.382362 GGATTATTATTAGTACGGGGCGCT 60.382 45.833 7.64 0.00 0.00 5.92
618 688 3.867493 GGATTATTATTAGTACGGGGCGC 59.133 47.826 0.00 0.00 0.00 6.53
619 689 4.436332 GGGATTATTATTAGTACGGGGCG 58.564 47.826 0.00 0.00 0.00 6.13
620 690 4.436332 CGGGATTATTATTAGTACGGGGC 58.564 47.826 0.00 0.00 0.00 5.80
621 691 4.681512 GCCGGGATTATTATTAGTACGGGG 60.682 50.000 2.18 0.00 39.21 5.73
622 692 4.081531 TGCCGGGATTATTATTAGTACGGG 60.082 45.833 2.18 0.00 39.21 5.28
623 693 5.075858 TGCCGGGATTATTATTAGTACGG 57.924 43.478 2.18 0.00 41.52 4.02
624 694 7.385752 TCTTTTGCCGGGATTATTATTAGTACG 59.614 37.037 2.18 0.00 0.00 3.67
625 695 8.611654 TCTTTTGCCGGGATTATTATTAGTAC 57.388 34.615 2.18 0.00 0.00 2.73
626 696 9.629878 TTTCTTTTGCCGGGATTATTATTAGTA 57.370 29.630 2.18 0.00 0.00 1.82
627 697 8.528044 TTTCTTTTGCCGGGATTATTATTAGT 57.472 30.769 2.18 0.00 0.00 2.24
628 698 9.981114 ATTTTCTTTTGCCGGGATTATTATTAG 57.019 29.630 2.18 0.00 0.00 1.73
629 699 9.757227 CATTTTCTTTTGCCGGGATTATTATTA 57.243 29.630 2.18 0.00 0.00 0.98
630 700 7.714813 CCATTTTCTTTTGCCGGGATTATTATT 59.285 33.333 2.18 0.00 0.00 1.40
631 701 7.216494 CCATTTTCTTTTGCCGGGATTATTAT 58.784 34.615 2.18 0.00 0.00 1.28
632 702 6.407525 CCCATTTTCTTTTGCCGGGATTATTA 60.408 38.462 2.18 0.00 33.83 0.98
633 703 5.427378 CCATTTTCTTTTGCCGGGATTATT 58.573 37.500 2.18 0.00 0.00 1.40
634 704 4.141733 CCCATTTTCTTTTGCCGGGATTAT 60.142 41.667 2.18 0.00 33.83 1.28
635 705 3.196685 CCCATTTTCTTTTGCCGGGATTA 59.803 43.478 2.18 0.00 33.83 1.75
636 706 2.027285 CCCATTTTCTTTTGCCGGGATT 60.027 45.455 2.18 0.00 33.83 3.01
637 707 1.554617 CCCATTTTCTTTTGCCGGGAT 59.445 47.619 2.18 0.00 33.83 3.85
638 708 0.972883 CCCATTTTCTTTTGCCGGGA 59.027 50.000 2.18 0.00 33.83 5.14
639 709 0.036483 CCCCATTTTCTTTTGCCGGG 60.036 55.000 2.18 0.00 0.00 5.73
640 710 0.673333 GCCCCATTTTCTTTTGCCGG 60.673 55.000 0.00 0.00 0.00 6.13
641 711 0.673333 GGCCCCATTTTCTTTTGCCG 60.673 55.000 0.00 0.00 0.00 5.69
642 712 0.399833 TGGCCCCATTTTCTTTTGCC 59.600 50.000 0.00 0.00 37.90 4.52
643 713 1.347378 TCTGGCCCCATTTTCTTTTGC 59.653 47.619 0.00 0.00 0.00 3.68
644 714 2.899256 TCTCTGGCCCCATTTTCTTTTG 59.101 45.455 0.00 0.00 0.00 2.44
645 715 3.258722 TCTCTGGCCCCATTTTCTTTT 57.741 42.857 0.00 0.00 0.00 2.27
646 716 2.999185 TCTCTGGCCCCATTTTCTTT 57.001 45.000 0.00 0.00 0.00 2.52
647 717 2.999185 TTCTCTGGCCCCATTTTCTT 57.001 45.000 0.00 0.00 0.00 2.52
648 718 2.999185 TTTCTCTGGCCCCATTTTCT 57.001 45.000 0.00 0.00 0.00 2.52
649 719 4.558226 ATTTTTCTCTGGCCCCATTTTC 57.442 40.909 0.00 0.00 0.00 2.29
657 727 4.293415 CATCGCATTATTTTTCTCTGGCC 58.707 43.478 0.00 0.00 0.00 5.36
659 729 4.261741 CCCCATCGCATTATTTTTCTCTGG 60.262 45.833 0.00 0.00 0.00 3.86
884 983 0.248949 GGCGTCCACTCGGAATAGAC 60.249 60.000 0.00 0.00 45.20 2.59
911 1010 3.366396 AGCTACCTATATATGCGCCTGT 58.634 45.455 4.18 0.00 0.00 4.00
966 1069 5.070180 TCAAAGATCTGCTCCTCCTATCTTG 59.930 44.000 0.00 0.00 37.08 3.02
1039 1148 2.125229 CGAGGACGAGGACGAGGA 60.125 66.667 0.00 0.00 42.66 3.71
1040 1149 2.436292 ACGAGGACGAGGACGAGG 60.436 66.667 0.00 0.00 42.66 4.63
1041 1150 2.800581 CGACGAGGACGAGGACGAG 61.801 68.421 0.00 0.00 42.66 4.18
1164 1273 2.269241 GCGTTGAGGAGGAAGGGG 59.731 66.667 0.00 0.00 0.00 4.79
1190 1299 3.066203 GGTGTGTACCTTTCTGTTGTTGG 59.934 47.826 0.00 0.00 43.97 3.77
1193 1302 2.557317 CGGTGTGTACCTTTCTGTTGT 58.443 47.619 0.00 0.00 45.22 3.32
1218 1330 0.112606 ACTGGTTGAGAGTCGGGAGA 59.887 55.000 0.00 0.00 0.00 3.71
1226 1338 4.342862 TCTTCCAAGAACTGGTTGAGAG 57.657 45.455 0.00 0.00 46.51 3.20
1254 1366 7.014134 TGTTTGCCAAGAAATAGAAGAACATGA 59.986 33.333 0.00 0.00 0.00 3.07
1266 1378 9.211485 CAAGAAGATATTTGTTTGCCAAGAAAT 57.789 29.630 10.03 10.03 38.88 2.17
1286 1398 9.918630 ACAAAGATCCATACAAAATTCAAGAAG 57.081 29.630 0.00 0.00 0.00 2.85
1295 1407 9.567776 TCTTGTAAGACAAAGATCCATACAAAA 57.432 29.630 0.00 0.00 37.69 2.44
1296 1408 9.567776 TTCTTGTAAGACAAAGATCCATACAAA 57.432 29.630 0.00 0.00 37.69 2.83
1297 1409 9.739276 ATTCTTGTAAGACAAAGATCCATACAA 57.261 29.630 0.00 0.00 37.69 2.41
1374 1486 2.260088 CTCCTCCTCCGACTCGTCCT 62.260 65.000 0.00 0.00 0.00 3.85
1375 1487 1.820481 CTCCTCCTCCGACTCGTCC 60.820 68.421 0.00 0.00 0.00 4.79
1553 1668 2.676471 GATGTGGTGGTGGTGGGC 60.676 66.667 0.00 0.00 0.00 5.36
1568 1683 4.324563 GCTATTGCTATATGTGGTGGGGAT 60.325 45.833 0.00 0.00 36.03 3.85
1573 1688 6.183360 GGCTATTGCTATTGCTATATGTGGTG 60.183 42.308 13.22 0.00 36.59 4.17
1797 1915 1.951602 GGCGGAAAACTGTACAAGGTT 59.048 47.619 0.00 0.00 37.44 3.50
1852 1971 6.002082 AGCATATCGTGATACTACCAGTACA 58.998 40.000 0.00 0.00 32.84 2.90
1858 1977 5.542616 ACGTAGCATATCGTGATACTACC 57.457 43.478 9.99 0.00 45.29 3.18
1869 1991 4.032900 CACAAGGAACACACGTAGCATATC 59.967 45.833 0.00 0.00 0.00 1.63
2004 2142 1.131883 CCTCTTTGTGTATGCTGCTGC 59.868 52.381 8.89 8.89 40.20 5.25
2052 2194 8.471609 CAAAACTAACTGGGGAAAAAGAAGTAA 58.528 33.333 0.00 0.00 0.00 2.24
2056 2198 6.437793 TGACAAAACTAACTGGGGAAAAAGAA 59.562 34.615 0.00 0.00 0.00 2.52
2058 2200 6.215495 TGACAAAACTAACTGGGGAAAAAG 57.785 37.500 0.00 0.00 0.00 2.27
2065 2207 4.275936 CACTTCCTGACAAAACTAACTGGG 59.724 45.833 0.00 0.00 0.00 4.45
2066 2208 4.881850 ACACTTCCTGACAAAACTAACTGG 59.118 41.667 0.00 0.00 0.00 4.00
2067 2209 6.316390 AGAACACTTCCTGACAAAACTAACTG 59.684 38.462 0.00 0.00 0.00 3.16
2085 2227 7.652524 ACACTCATGATATCTACAGAACACT 57.347 36.000 3.98 0.00 0.00 3.55
2131 2274 1.280998 TCATCCGGGGAAGAAAAGACC 59.719 52.381 0.00 0.00 0.00 3.85
2132 2275 2.781681 TCATCCGGGGAAGAAAAGAC 57.218 50.000 0.00 0.00 0.00 3.01
2134 2277 3.350219 TCTTCATCCGGGGAAGAAAAG 57.650 47.619 26.85 11.99 45.62 2.27
2138 2281 0.323999 TCGTCTTCATCCGGGGAAGA 60.324 55.000 25.88 25.88 46.21 2.87
2139 2282 0.535335 TTCGTCTTCATCCGGGGAAG 59.465 55.000 23.05 23.05 42.42 3.46
2140 2283 0.978151 TTTCGTCTTCATCCGGGGAA 59.022 50.000 0.00 5.39 0.00 3.97
2141 2284 0.535335 CTTTCGTCTTCATCCGGGGA 59.465 55.000 0.00 0.00 0.00 4.81
2142 2285 0.535335 TCTTTCGTCTTCATCCGGGG 59.465 55.000 0.00 0.00 0.00 5.73
2143 2286 2.205074 CATCTTTCGTCTTCATCCGGG 58.795 52.381 0.00 0.00 0.00 5.73
2155 2298 0.957395 ACTGCACAGGCCATCTTTCG 60.957 55.000 5.01 0.00 40.13 3.46
2157 2300 0.963962 CAACTGCACAGGCCATCTTT 59.036 50.000 5.01 0.00 40.13 2.52
2158 2301 0.178981 ACAACTGCACAGGCCATCTT 60.179 50.000 5.01 0.00 40.13 2.40
2167 2310 3.218470 GCCCAGCACAACTGCACA 61.218 61.111 0.00 0.00 46.97 4.57
2168 2311 3.982241 GGCCCAGCACAACTGCAC 61.982 66.667 0.00 0.00 46.97 4.57
2180 2323 2.047655 GAACACGACGATGGCCCA 60.048 61.111 0.00 0.00 0.00 5.36
2201 2344 3.918544 ATGGTTACATGGCGGTGC 58.081 55.556 0.00 0.00 35.57 5.01
2226 2372 7.448469 CCTTCCTTCCATTCTCTTCTTTACAAA 59.552 37.037 0.00 0.00 0.00 2.83
2234 2380 5.428184 TCTTCCTTCCTTCCATTCTCTTC 57.572 43.478 0.00 0.00 0.00 2.87
2240 2386 6.206180 TCTTCTTTCTTCCTTCCTTCCATT 57.794 37.500 0.00 0.00 0.00 3.16
2241 2387 5.850046 TCTTCTTTCTTCCTTCCTTCCAT 57.150 39.130 0.00 0.00 0.00 3.41
2242 2388 5.646692 TTCTTCTTTCTTCCTTCCTTCCA 57.353 39.130 0.00 0.00 0.00 3.53
2243 2389 6.016693 CACTTTCTTCTTTCTTCCTTCCTTCC 60.017 42.308 0.00 0.00 0.00 3.46
2246 2392 5.825151 CACACTTTCTTCTTTCTTCCTTCCT 59.175 40.000 0.00 0.00 0.00 3.36
2258 2404 9.772973 TGTTTATGTATGTACACACTTTCTTCT 57.227 29.630 5.77 0.00 39.30 2.85
2336 2482 2.681706 CAAACGCAGATGAGAGACTGT 58.318 47.619 0.00 0.00 36.62 3.55
2337 2483 1.392853 GCAAACGCAGATGAGAGACTG 59.607 52.381 0.00 0.00 37.22 3.51
2339 2485 0.723981 GGCAAACGCAGATGAGAGAC 59.276 55.000 0.00 0.00 0.00 3.36
2341 2487 1.372087 GGGGCAAACGCAGATGAGAG 61.372 60.000 0.00 0.00 0.00 3.20
2342 2488 1.377202 GGGGCAAACGCAGATGAGA 60.377 57.895 0.00 0.00 0.00 3.27
2343 2489 2.409870 GGGGGCAAACGCAGATGAG 61.410 63.158 0.00 0.00 0.00 2.90
2344 2490 2.361104 GGGGGCAAACGCAGATGA 60.361 61.111 0.00 0.00 0.00 2.92
2346 2492 1.978617 CAAGGGGGCAAACGCAGAT 60.979 57.895 0.00 0.00 0.00 2.90
2347 2493 2.597217 CAAGGGGGCAAACGCAGA 60.597 61.111 0.00 0.00 0.00 4.26
2348 2494 2.026945 AAACAAGGGGGCAAACGCAG 62.027 55.000 0.00 0.00 0.00 5.18
2349 2495 2.022240 GAAACAAGGGGGCAAACGCA 62.022 55.000 0.00 0.00 0.00 5.24
2350 2496 1.300620 GAAACAAGGGGGCAAACGC 60.301 57.895 0.00 0.00 0.00 4.84
2351 2497 0.031994 CTGAAACAAGGGGGCAAACG 59.968 55.000 0.00 0.00 0.00 3.60
2352 2498 1.408969 TCTGAAACAAGGGGGCAAAC 58.591 50.000 0.00 0.00 0.00 2.93
2391 2543 1.295357 ACACACACACACACACACCG 61.295 55.000 0.00 0.00 0.00 4.94
2413 2565 1.815003 CCTTGATCTCAACTGCCCAAC 59.185 52.381 0.00 0.00 0.00 3.77
2414 2566 1.272092 CCCTTGATCTCAACTGCCCAA 60.272 52.381 0.00 0.00 0.00 4.12
2415 2567 0.329261 CCCTTGATCTCAACTGCCCA 59.671 55.000 0.00 0.00 0.00 5.36
2417 2569 1.407989 CCTCCCTTGATCTCAACTGCC 60.408 57.143 0.00 0.00 0.00 4.85
2418 2570 1.407989 CCCTCCCTTGATCTCAACTGC 60.408 57.143 0.00 0.00 0.00 4.40
2420 2572 2.649742 TCCCTCCCTTGATCTCAACT 57.350 50.000 0.00 0.00 0.00 3.16
2421 2573 3.434310 GGATTCCCTCCCTTGATCTCAAC 60.434 52.174 0.00 0.00 38.19 3.18
2422 2574 2.780010 GGATTCCCTCCCTTGATCTCAA 59.220 50.000 0.00 0.00 38.19 3.02
2423 2575 2.412591 GGATTCCCTCCCTTGATCTCA 58.587 52.381 0.00 0.00 38.19 3.27
2426 2578 1.132500 ACGGATTCCCTCCCTTGATC 58.868 55.000 0.00 0.00 41.49 2.92
2427 2579 1.596496 AACGGATTCCCTCCCTTGAT 58.404 50.000 0.00 0.00 41.49 2.57
2428 2580 1.004277 CAAACGGATTCCCTCCCTTGA 59.996 52.381 0.00 0.00 41.49 3.02
2429 2581 1.463674 CAAACGGATTCCCTCCCTTG 58.536 55.000 0.00 0.00 41.49 3.61
2430 2582 0.331616 CCAAACGGATTCCCTCCCTT 59.668 55.000 0.00 0.00 41.49 3.95
2431 2583 0.845102 ACCAAACGGATTCCCTCCCT 60.845 55.000 0.00 0.00 41.49 4.20
2432 2584 0.393944 GACCAAACGGATTCCCTCCC 60.394 60.000 0.00 0.00 41.49 4.30
2433 2585 0.618981 AGACCAAACGGATTCCCTCC 59.381 55.000 0.00 0.00 41.07 4.30
2434 2586 1.278127 TGAGACCAAACGGATTCCCTC 59.722 52.381 0.00 0.00 0.00 4.30
2441 2593 2.925724 ACAACAATGAGACCAAACGGA 58.074 42.857 0.00 0.00 0.00 4.69
2480 2634 0.912486 AGCCTATTTGCTCGAACCCT 59.088 50.000 0.00 0.00 36.75 4.34
2483 2637 1.086696 TGCAGCCTATTTGCTCGAAC 58.913 50.000 0.00 0.00 40.32 3.95
2494 2648 2.190313 CGGCCTGATTGCAGCCTA 59.810 61.111 11.67 0.00 40.91 3.93
2499 2653 4.113815 CTCCCCGGCCTGATTGCA 62.114 66.667 0.00 0.00 0.00 4.08
2532 2699 3.933955 CTCACTGTACTACGTACTGCTCT 59.066 47.826 9.89 0.00 40.13 4.09
2533 2700 3.931468 TCTCACTGTACTACGTACTGCTC 59.069 47.826 9.89 0.00 40.13 4.26
2534 2701 3.935315 TCTCACTGTACTACGTACTGCT 58.065 45.455 9.89 0.00 40.13 4.24
2535 2702 4.331992 TCATCTCACTGTACTACGTACTGC 59.668 45.833 9.89 0.00 40.13 4.40
2536 2703 5.811100 TCTCATCTCACTGTACTACGTACTG 59.189 44.000 8.79 8.79 41.50 2.74
2537 2704 5.975282 TCTCATCTCACTGTACTACGTACT 58.025 41.667 5.83 0.00 39.49 2.73
2538 2705 6.345961 CGATCTCATCTCACTGTACTACGTAC 60.346 46.154 0.00 0.00 39.24 3.67
2539 2706 5.690857 CGATCTCATCTCACTGTACTACGTA 59.309 44.000 0.00 0.00 0.00 3.57
2540 2707 4.508492 CGATCTCATCTCACTGTACTACGT 59.492 45.833 0.00 0.00 0.00 3.57
2541 2708 4.084276 CCGATCTCATCTCACTGTACTACG 60.084 50.000 0.00 0.00 0.00 3.51
2580 2747 4.450053 CAGGAGAAGGACAAGATGGAATC 58.550 47.826 0.00 0.00 46.04 2.52
2581 2748 3.201708 CCAGGAGAAGGACAAGATGGAAT 59.798 47.826 0.00 0.00 0.00 3.01
2582 2749 2.573462 CCAGGAGAAGGACAAGATGGAA 59.427 50.000 0.00 0.00 0.00 3.53
2590 2757 1.609501 CGGGACCAGGAGAAGGACA 60.610 63.158 0.00 0.00 0.00 4.02
2660 2829 2.578713 GCATGTGCATCTGCGTGC 60.579 61.111 7.57 5.69 45.83 5.34
2679 2848 1.297378 CGCATCTCGCATGTGCAAG 60.297 57.895 0.00 0.00 42.60 4.01
2680 2849 1.741032 TCGCATCTCGCATGTGCAA 60.741 52.632 0.00 0.00 42.60 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.