>input_sequence_70594
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--------------------------------------------------------------------ATGCCGACGGGA
ACCATGAGGAGGATGTTCGTCGAGTCGTCCTCGTCCTCGTCCTCGTCGTCCGGGAGCGGCAGGGAGGCGGAGCCGGCGGT
GGTGCTGTGCGCGCCTCGCCCGCGCAGGGTCCACGCCCAGCCCTGCAGCGCCGACCTCATCCTCGGCCCTCCCCCCTTCC
TCCTCAACGCCTCCTCCGCCAACAACAG---AAAGGTACACACCGGCCGTCTCCCGACTCTCAACCAGTTCTTGGAAGAA
AATTTTCATGTTCTTCTATTTCTTGGCAAACAAATATCTTCTTGAATTTTGTATGGATCTTTGTCTTACAAGAATCTGTT
CTTTCTTATTGCAGCAGAGAGAAGGGAAGAGCAAAACGCGGGAGGAG---GACGAGTCGGAGGAGGAGGGGGAGGGGGGC
TGGGCGCTGTTCGGCGGCTCGCCGCCGGCGCGCGCGGACAACCCGCTCGTCCACGACCCCCACTTCCTGCTCAACCAGCG
AAACCACGCCGCCGCCGACTTCAACCTCGCGGCGGTTTTTGACCACCACCTCCACCACCACAGCCGCGCCCACCACCACC
ACATCCCCACCACATATAGCAATAGC---AATAGCCACAGTTTTGCCCCGTCGTACACGCACGCCGCGCCGGCGGTGAGG
ATCCAGGGGTTCGACGTCGCCGCCTGCCGGGGCTCCCACGGCAGCAACGGCGGAGGCCGCGTGCTCTCCGCCCGCGCCTG
A-------------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G481600
ACACATAGATGGTCCTTAAAGACTAACCAGGGATTATTGTCTTGAGACCCGAAACTGTACCGGAACTAATAAGTACTTCC
TCCGTCTCATAATGTAAGTACGTTTCTGAAACTACTACACTAGTAACAAAACCGTTCTTACATTTTAGGACAGGGAGTAG
ATTACTTTTCCTGTTACTAGTGTAGTAGTTTCAGAAACAAAAGGAGCGATCCAGCAAGAAAATCCATCGTTTACTATATA
GACACAATAACACGCAGGGTCAATTAGTACCATATCATGACAGACATATTTCGTGATGTTAACAC--------ACACACA
AATCAAACAGGAGAGGTCGTAGGCCCGTGATAAGGATCTCTTTCGAAGGAAA------------AGAAAAAATCGGGTTC
GGTTTGATTCCCA---------CGGGGAACAATCTGGAGACACGGCACAAGTTGCGTTGGCGCGGC--------------
--GCACCTCATGTGCGCGCGGGACGGCCTCCGGCTCCCACCTCCACTGGCGCTGGACACCGATCGTG------AAGCAAC
CGCGCCAGCGTCGCCACCACTACTGGCCTACCGCCAACGTTTCGCGCCTAG------------------GGTGCGCAATA
AATAAATTTATTATGCGAGTGGCCCACTCGTCAGAAGAAAAATAATAGCGCCCCGTACTAATAATAATCCCGGCAAAAGA
AAATGGGGCCAGAGAAAAATAATGCGATGGGGACGAGAGACGTGGTCCACCTGCCCAGCCGGGCGCCAACTCAGGGGCCG
AGGGGCGGGAGCGGTTGGTATATC----AGTGGTGGCCGAGGCGGTCA---------GCACCGCATTGCCGCGCCTCCT-
-------TCCTCCTCCTACTTCACACGCACGGAAGGCA----GAGAGAGGCGACCCAACCGCCCCCTCCGCTGCTTCAGT
TCGTCCGCTCCATC----CCGTGTCTATTCCGAGTGGACGCCAACACACACAGGCGCATATATAGGTAGCTTTATTTAGC
TACGGCTGAAGAGAGCCTGATT----TACAAGATAGGAGGAGCAGATCTTTGAGGAG--G----GAGCATGCCGACGGGA
ACCATGAGGAGGATGTTCGTCGAGTCGTCCTCGTCCTCGTCCTCGTCGTCCGGGAGCGGCAGGGAGGCGGAGCCGGCGGT
GGTGCTGTGCGCGCCTCGCCCGCGCAGGGTCCACGCCCAGCCCTGCAGCGCCGACCTCATCCTCGGCCCTCCCCCCTTCC
TCCTCAACGCCTCCTCCGCCAACAACAG---AAAGGTACACACCGGCCGTCTCCCGACTCTCAACCAGTTCTTGGAAGAA
AATTTTCATGTTCTTCTATTTCTTGGCAAACAAATATCTTCTTGAATTTTGTATGGATCTTTGTCTTACAAGAATCTGTT
CTTTCTTATTGCAGCAGAGAGAAGGGAAGAGCAAAACGCGGGAGGAG---GACGAGTCGGAGGAGGAGGGGGAGGGGGGC
TGGGCGCTGTTCGGCGGCTCGCCGCCGGCGCGCGCGGACAACCCGCTCGTCCACGACCCCCACTTCCTGCTCAACCAGCG
AAACCACGCCGCCGCCGACTTCAACCTCGCGGCGGTTTTTGACCACCACCTCCACCACCACAGCCGCGCCCACCACCACC
ACATCCCCACCACATATAGCAATAGC---AATAGCCACAGTTTTGCCCCGTCGTACACGCACGCCGCGCCGGCGGTGAGG
ATCCAGGGGTTCGACGTCGCCGCCTGCCGGGGCTCCCACGGCAGCAACGGCGGAGGCCGCGTGCTCTCCGCCCGCGCCTG
AAGCCTGGGCCTCAGCCTGAGCCGAGCAGAGCCCACCCGCAAGGGAGAAGCCACCCACCGCCGTCGTCCTCACCAACCTT
GTACAGTTTTCCGCCGGCCGCCGCGTATGTACGTACGTAC-TACGTCTAGTGTACTGGT---AGTATCACGATATGCTAC
GTGTGTTCCTTGTGGTATATAC----------------ATACATACGGGTTTACGTGATGAATTAACATGAGATGGGTAG
CGAGGGTCGTCTAAAGACTAAGTAAGTTTAATTAAGAGTAGTAGAAGAAGAATGATCATCAGCAGCAGCATACACAAAGA
GGATCGATCA----AAGGAGAGGATTTCTATTTTTACTTCTTTTTCCCCAGTTAGTTTTGTCAGGAAGTGTTCTGTAGAT
ATCATGAGTGTTAATCTT-TTCTAAGAAGGGTCGGTCTTTTCTTCCCCGGATGAAGACGAAAGATGGCCTGTGCAGTTGT
GCTGGGCCATCGTCGTGTTCATCG---CACCGCCATGTAACCATGGTTGTATTTGTAAAGAAGAGAATGGAAGGAAGGAA
GAAAGAAGAAAGTGTGTACATACATAAACATGTTTGTTATGGAGCTGTACCATGTAATGGAATTGCATCAAGTTGATTCA
AACAGTCTCTCATCTGCGTTTGCCCCCTTGTT------TCAGAAACTCTTTCCTGTTGCCTTCGGTGTGTGTGTGTGTGT
GTGTGTTGGGCAGTTGAGATCAAGGGAGGGAAT--CCGTTTGGTCTCATTGTTGTAACAATTTTTTTTGGCGAAGGGTTC
GAGCAAATAGGCTGCAATCAGGCCGGGGAG-------------GGCGGTGGTTGCGAGAGAGCAGTACGTAGTACAGTGA
GATGAGATCGGATCAAATCCCATGATGATTCCATCTTGTCCTTCTCCTGGTCCCGG--ACGGCCAGGGTGAGCTGTTAGT
TGGTTCGGCCCCGATTTTCCCCGGGCAGGCACGCAGATGCACATGCACTTGCACATGCGAGATGCGACTTTTCGACGCGA
CCTGCCGCTGCC
>chr3A_267
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--------------------------GTATCATATCATCACGTACATATTTCGTGATGTTAACACACACACACACACACA
AATCAAACAGGAGAAGTCGCACGCCCGTGATAACGATTTGATGCCCCCGGCATTTGTTCGAAGCAAAAAAAATCGGGCTG
GGCTGGGTTGGGTTGGGTTCCGCGGGGAACAATCTGGAGACACGGCACAAGTTGCGTTGGCGCGGCGCACGTGATCGGCC
AGGCACCTCATGTGCGCGCGG------------CTTCCACCTCCACTGCCGCTCGACACCGATCGTG------AAGCAAC
CGCGCCAGCGTCGCCACCACTACTGGCCTACCGCCAGCGTCTCGCGCCTAC------------------CCTCCAAAAAA
TAAAAAATAAAAATA----------------------------------------------------------------A
AAATGGAGGCAGAGAAAAATAATGCGCTGGGGGTGAGAGGCGTGGTCCACCTGCCCAGCCGGGCGCCAACTCA-------
---GG----AGCGGTTGGTATATCTATGAGTGGTGGCCGAGG-------------TCGCATCGCATTGCCTCCT-TCCTC
CTCCTCCTCCTCCTCCTGCTTCACACGCACGGAAGGCAGAGCGAGAGAGGCGACCCAACCGCCCCCTCCGCTGCTTCAGT
TCCTCCGCTCCATCCACCCCGTTTCTATTCCCAGTGGACGCCAACACACGCAGGCGCATCGCTG----GCTATATTTAGC
CATAGCTGAAGAGAGTCTGATTTACGTAGAAGATAGGAGGAGCAGATCTTTGAGGAGAGAGAGAGAGCATGCCGACGGGA
ACCATGAGGAGGATGTTCGTCGAGTCG---TCGTCCTCGTCCTCGTCCTCCGGGAGCGGCAGGCAGGCGGAGGCGACGGT
GGTGCTGTGCGCGCCCCGGCCGCGCAGGGTGCACGCCCAGCCATGCAGCGCCGACCTCATCCTCGGCCCCCCACCCTTCC
TCCTCGACGCCTCCTCCGGCAGCAACAGCAGAAAGGTACCGTCCGTC---CTCCCAATCCTCAACCAGTTCTTGCAAGAA
AATTTCCATGTTCTTTTGTTTCTTGGCCTTGATTTTTTTGG--------TGTATGGATATTTGTCTTACAAGAACCTGTT
CTTTGTTATTGCAGCAGAGAGAAGGGAAGAGCAAAACGCGGGAGGTCGACGACGAGTCGGAGGAGGAGGGGGAGGGGGGC
TGGGCGCTGTTCGGCGGCTCGCCGCCGGCGCGCGCGGACAACCCGCTCGTCCACGACCCCCACTTCCTGCTCAACCAGCG
CCACCACGCCGCCGCCGACTTCAACCTCGCGGCGGTTTTTGACCACCACCTCCACCACCACAGCCGCACCCACCACCACC
ACGTCCCA---ACATATAGCAATAGCAGTAGTAACCACAGTTTTGCCCCGTCGTACACGCACGCCGCGCCGGCGGTGAGG
ATCCAGGGGTTCGACGTCGCGGCCTGCCGGGGCTCCCACGGCAGCAACGGCGGAGGCCGCGTGCTCTCCGCCCGCGCCTG
AGCCCCA-GCCCCAGCCCGAGCCGAGCAGAGCCGACCCGCAAGGGGGAAGCCACCCACCGCCGTCGTCCTCACCGACCTT
GTACAGTTTTCCGCCGGCCGCCGCGTATGTACGTACGTACCTACGTCTAGCGTACTACTAGCAGTATCACCATATGCTAC
GTGTGTTCCTTGTGGTATATACATACATACATACATACATACATACGGGTTTACGTGATGAATTAACATGAGATGGGTAG
CCAGGGTCGTCTAAAGACTAAGTAAGGTTAATTAAGAGTAGTAGAAGAAGAATGATCATCATCAGCAGCATACACAAAGA
GGATCGATCTTATCAAAGAGAGGATTTCTATTTGTACCTTTTTTTCG--AGTTAGTTTTGTCAGGAGGTGATGTGTAGAT
ATCATGAGTGTTAATCTTGTTCTAAGAAGGGTCTTT----------CCGGATGAAGATGG-AGATGGCCCTTGCAGTTGT
GCCGGGCCATCGTCGTGTTCATCTCACCACCGCCATGTAACCATGGTTGTACTTGTAAAAAAGAG----GATGGAAGGAA
GGATGAAGAAAGTGTGTACATACATAAACTTGTTGGTTATGCAGCTGTACCATGTAATCGAATTGCAT-AAGTTGATTCA
ATAACCTCTCCCGAGT--TTTGCCCCCTTGTTTCATATTCAGATATTTCTTCCTGTCGCCTTTGGTGTGTGTGTGTGTGT
GTGTTGGGAACCTCGGATGCA-----AGAGAGAGGCCTTTTGTTTTCTTTGCCGTTGCCAAAGTTTGTGGCGGTGGTTGT
--------------------------------------------------------------------GTAGTACAGTGA
GATGAGATCGGATCAAATCCCAGGAT---TCCATCCCGTCCTGGCCC-----CCGGTTGTGGACGGGGTGAGCTGTTGGC
--------CCCCGATTTTCCCCGGGCAGAG--------------GCAGATGCACATGCGAGATGCGACTTTTCGACGCGA
GCTGCCGCTGCC
>chr3D_478
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------------------------------------------CCACTGGTGCTGGACACCGATCGCCAACGCCAAGCAAC
CGCGCCAACGTCGCCACCACTACTGGCCTACCGCCAACGTTTCGCGCCTAGGGTAGCCAGCAGGAAGGCGGTGCGCAATA
AATAAATTTATTATACGAACGGGCCCCCTTTCGCAAAAATAAAAAATAA------------------------------A
AAATGGAGGCAGAGAAAAATAATGCGATGGGGGCGAGAGACGTGGTCCACCTGCCCAGCCGGGCGCCAACTCA-------
---GGCGGGAGCGGTTGGTATATC----AGTGGTGGCCGAGGCGGTCAGCACCGCTCGCATCGCATTGCCGCGCCTTCCC
TTCATTCCCACCCGCCTACTTCACGCGCA-------------------------CCAACCACCCCCTCCGCTGCTTCAGT
TCGTCCGCTCCATCCATCCCGTTTCTATTCCGAGTGGACGCCAGGCGCATAGGTATATTTG-------------------
----GCTGTAGAGAGCCTGATT----TAGAAGATAGGAGGAGCACATCTTTGAGAGGGAG----GAGCATGCCGACGGGA
ACCATGAGGAGGATGTTCGTCGAG---------TCGTCCTCGTCCTCCTCCGGGAGCGGCAGGGAGGCGGAGCCGGCGGT
GGTGCTGTGCGCGCCCCGGCCCCGCAGGGTCCACGCCCAGCCCTGCAGCGCCGACCTCATCCTCGGCCCCCCGCCCTTCC
TGCTCAACGCCTCCTCCGGCAGCAT------AAAGGTACCGTCCGTC---CTCCCGATTCCCAACCACTTCTTGGAAGAA
AATTTCCATGCTCTTTTGTTTCTTGGCAGAGATCTGCTCTCGA-------------ATTTTTGTCTTACAAGAATCT---
CTTTCTTATTGCAGCAGAGACAAGGGAAGAGCAAAACGCG------------------GGAGGAGGAGGGGGAGGGGGGC
TGGGCGCTGTTCGGCGGCTCGCCGCCGGCGCGCGCGGACAACCCGCTCGTCCACGACCCCCACTTCCTGCTCAACCAGCG
CCACCACGCCGCCGCGGAATTCAACCTCGCGGCGGTTTTTGACCACCACCTCCACCACCACAGCCGCA---ACCACCACC
ACGCCCCAACCACATATAGCAATAGCGGCAATAGCCACAGTTTTGCCCCGTCGTACACGCACGCCGCGCCGGCGGTGAGG
ATCCAGGGGTTCGACGTCGCCGCCTGCCGGGGCTCCCACGCCAGCAACGGCGGAGGCCGCGTGCTCTCCGCCCGCGCATG
AGCCTGA-GCCCTGCGGAATTGCAT-------------------------------------------------------
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----------------------------CATGTTGGTTATGCAGCTGTACCATGTAATGGAATTGCATCAAGTTGATTCA
ATAATTTCTCCTGAGT--TTTGCACCCTTGTTTCAGA-TCAGAAACTCCTTCATGTTGCCTTTGGTGTGTGTGTGTTGTG
GGGAACCT--CCTCAGATGCA-----AGGGAAA--CCTTTTGTTTTGCTTGTTGTTGCCAAGGTTTCGGGCGATGGATTC
GAGCAAACAGGCAGCAATCAGGGCGGGGAGGTGCGGTCCTGCCGGCGGTGGTTGCGAGTA--------GTAGTACAGTGA
GATGAGATGGGATGAAATCCCATGAT---TCCATCTCGTCCTTGGCCTGGTCCCGGGCACGGCCAGGGTGAGCTGTTGGT
TGGTTCGACCCCGATTTTCCCCGGGCA--G--------------GCAGATGCACATGC----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S--SS-------------------------------------
--------------S----S-S-----------S---S-SS-S-SSSS-SS--------------S-----------S-S
--S-S-S--SSSS-------------------------------------------------------------------
---------------------SSSSSSSSSSSS--S--------------------------------------------
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--------------S---SS--S--S-SSS--SS--S--S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------S-S-----------------------S----------------------------------------SSSSSSS
SSS---------------------------------------------------------S-------------------
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----------------------S--------------------------S---------SSS-SSSSS---S--------
S-SS------------------------S---------------------------------------------------
---------------------------SSS-----------------S--------------------------------
---------------S--S--------------------------------------------------S--S-------
------------------S--S-----------------SSS---S-SSS-------S----------------------
-----S---------S-S----------S-S-SS-S-S---SSSSSSSS---------S---------------------
---------------------------------------------SS---------------------------------
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SS-----------------------------------------------------------------S------------
--S----S------------------------------------------------------------------------
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-SS--SSS---S-----S---------------S-----------S----------------------------S-----
--------------------------------------------------S-----SS------------S---------
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-S------------------------S----------------------------------S------------------
---------S------S----------------S---S-S------SSS-----------------S---S-S-------
---------------------------------SS-SSSSSSSSSS-----------S-SS--------SS---------
--S--------------------S---------------------------S-------S-----SSSS--S--------
-S-S------------------------------S------S--------------------------------------
-SS-S-SSSS-SSSSSSS------------------------------S-------------S-----------------
----SSS-SS-SSSS--SSSSSSSSS------S----S----S-S--S-------SS-S-SSS---S------S--S---
-------S----S---------S-----------------------------------SSSSSSSSSS------------
--------------------------SSS-------S------SS--------------------------------S--
-------S--------------------SSSSSSSSSSSSSSSS---SS-------------------------------
S-----------
>forward_66
----------------------------------------------ACCCGAAACTGTACCGGAAC--------------
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>reverse_1330
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-------------------------------------------------TCTCCCGACTCTCAACCAGT-----------
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>forward_680
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--------------------GGCCCACTCGTCAGAAGAAA----------------------------------------
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>reverse_2497
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----------------CGTTTGCCCCCTTGTTTCAG--------------------------------------------
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