Multiple sequence alignment - TraesCS3B01G475600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G475600 chr3B 100.000 4847 0 0 1 4847 724181736 724186582 0.000000e+00 8951.0
1 TraesCS3B01G475600 chr3A 86.147 2411 165 76 51 2320 683543057 683545439 0.000000e+00 2446.0
2 TraesCS3B01G475600 chr3A 91.839 772 41 13 2382 3145 683545683 683546440 0.000000e+00 1057.0
3 TraesCS3B01G475600 chr3A 94.053 454 24 1 3396 3846 683546433 683546886 0.000000e+00 686.0
4 TraesCS3B01G475600 chr3A 87.652 575 28 10 3958 4526 683547028 683547565 3.180000e-176 628.0
5 TraesCS3B01G475600 chr3A 84.176 613 57 10 4253 4847 683680452 683681042 4.240000e-155 558.0
6 TraesCS3B01G475600 chr3A 85.479 303 28 6 4554 4847 24201620 24201325 7.880000e-78 302.0
7 TraesCS3B01G475600 chr3A 88.618 246 22 2 4607 4847 683547807 683548051 1.320000e-75 294.0
8 TraesCS3B01G475600 chr3D 90.275 1491 71 24 3396 4847 546999564 547001019 0.000000e+00 1882.0
9 TraesCS3B01G475600 chr3D 94.477 1213 49 7 954 2163 546997499 546998696 0.000000e+00 1853.0
10 TraesCS3B01G475600 chr3D 92.035 904 32 7 2251 3145 546998699 546999571 0.000000e+00 1234.0
11 TraesCS3B01G475600 chr3D 86.037 752 25 31 122 816 546996369 546997097 0.000000e+00 734.0
12 TraesCS3B01G475600 chr3D 96.429 56 2 0 901 956 546997420 546997475 5.170000e-15 93.5
13 TraesCS3B01G475600 chr2A 87.000 300 24 6 4554 4847 5290186 5290476 1.680000e-84 324.0
14 TraesCS3B01G475600 chr7A 84.706 255 32 5 4563 4815 115587644 115587395 1.040000e-61 248.0
15 TraesCS3B01G475600 chr6A 85.116 215 27 4 4552 4761 156674161 156673947 1.060000e-51 215.0
16 TraesCS3B01G475600 chr6A 84.038 213 27 4 4555 4761 519768130 519768341 1.060000e-46 198.0
17 TraesCS3B01G475600 chr4B 85.926 135 15 3 4685 4816 604889128 604888995 1.820000e-29 141.0
18 TraesCS3B01G475600 chr2D 94.545 55 1 2 3341 3395 607295210 607295158 3.110000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G475600 chr3B 724181736 724186582 4846 False 8951.0 8951 100.0000 1 4847 1 chr3B.!!$F1 4846
1 TraesCS3B01G475600 chr3A 683543057 683548051 4994 False 1022.2 2446 89.6618 51 4847 5 chr3A.!!$F2 4796
2 TraesCS3B01G475600 chr3A 683680452 683681042 590 False 558.0 558 84.1760 4253 4847 1 chr3A.!!$F1 594
3 TraesCS3B01G475600 chr3D 546996369 547001019 4650 False 1159.3 1882 91.8506 122 4847 5 chr3D.!!$F1 4725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.033601 TCTCCCTGACAGAGAGGAGC 60.034 60.0 13.46 0.0 44.67 4.70 F
829 935 0.033699 GCTCCTCCCCTGCAAAATCT 60.034 55.0 0.00 0.0 0.00 2.40 F
1555 1986 0.250338 GAACGGCTCCAACTCCAAGT 60.250 55.0 0.00 0.0 0.00 3.16 F
3195 3876 0.035439 CACTTGGTAGGTTGGGCGAT 60.035 55.0 0.00 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2378 0.037326 TTTGGTAGCACTCTGGAGCG 60.037 55.0 0.00 0.00 34.32 5.03 R
2175 2612 2.198827 ACAAACATCTCAATCCGGCA 57.801 45.0 0.00 0.00 0.00 5.69 R
3247 3928 0.034756 TCTAAAGCAGCCGAGCACAA 59.965 50.0 0.00 0.00 36.85 3.33 R
4713 5677 0.749049 GGCAGATCCTCCATTTTGCC 59.251 55.0 2.95 2.95 43.54 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.445436 GAGCAACAGTCCATTCAGCG 59.555 55.000 0.00 0.00 0.00 5.18
20 21 0.957395 AGCAACAGTCCATTCAGCGG 60.957 55.000 0.00 0.00 0.00 5.52
21 22 0.955428 GCAACAGTCCATTCAGCGGA 60.955 55.000 0.00 0.00 0.00 5.54
22 23 1.742761 CAACAGTCCATTCAGCGGAT 58.257 50.000 0.00 0.00 34.32 4.18
23 24 2.905075 CAACAGTCCATTCAGCGGATA 58.095 47.619 0.00 0.00 34.32 2.59
24 25 3.270027 CAACAGTCCATTCAGCGGATAA 58.730 45.455 0.00 0.00 34.32 1.75
25 26 2.906354 ACAGTCCATTCAGCGGATAAC 58.094 47.619 0.00 0.00 34.32 1.89
26 27 2.213499 CAGTCCATTCAGCGGATAACC 58.787 52.381 0.00 0.00 34.32 2.85
27 28 1.837439 AGTCCATTCAGCGGATAACCA 59.163 47.619 0.00 0.00 34.32 3.67
28 29 1.940613 GTCCATTCAGCGGATAACCAC 59.059 52.381 0.00 0.00 34.32 4.16
29 30 0.937304 CCATTCAGCGGATAACCACG 59.063 55.000 0.00 0.00 35.59 4.94
30 31 1.651987 CATTCAGCGGATAACCACGT 58.348 50.000 0.00 0.00 35.59 4.49
31 32 1.593006 CATTCAGCGGATAACCACGTC 59.407 52.381 0.00 0.00 35.59 4.34
32 33 0.892755 TTCAGCGGATAACCACGTCT 59.107 50.000 0.00 0.00 35.59 4.18
33 34 0.454600 TCAGCGGATAACCACGTCTC 59.545 55.000 0.00 0.00 35.59 3.36
34 35 0.527817 CAGCGGATAACCACGTCTCC 60.528 60.000 0.00 0.00 35.59 3.71
35 36 1.227176 GCGGATAACCACGTCTCCC 60.227 63.158 0.00 0.00 35.59 4.30
36 37 1.673808 GCGGATAACCACGTCTCCCT 61.674 60.000 0.00 0.00 35.59 4.20
37 38 0.102481 CGGATAACCACGTCTCCCTG 59.898 60.000 0.00 0.00 35.59 4.45
38 39 1.481871 GGATAACCACGTCTCCCTGA 58.518 55.000 0.00 0.00 35.97 3.86
39 40 1.136500 GGATAACCACGTCTCCCTGAC 59.864 57.143 0.00 0.00 37.96 3.51
40 41 1.822990 GATAACCACGTCTCCCTGACA 59.177 52.381 0.00 0.00 45.60 3.58
41 42 1.254026 TAACCACGTCTCCCTGACAG 58.746 55.000 0.00 0.00 45.60 3.51
42 43 0.469331 AACCACGTCTCCCTGACAGA 60.469 55.000 3.32 0.00 45.60 3.41
43 44 0.896019 ACCACGTCTCCCTGACAGAG 60.896 60.000 3.32 0.00 45.60 3.35
44 45 0.609406 CCACGTCTCCCTGACAGAGA 60.609 60.000 3.32 0.00 45.60 3.10
45 46 0.808125 CACGTCTCCCTGACAGAGAG 59.192 60.000 7.64 7.64 45.60 3.20
46 47 0.322997 ACGTCTCCCTGACAGAGAGG 60.323 60.000 13.46 12.08 46.63 3.69
47 48 0.034960 CGTCTCCCTGACAGAGAGGA 60.035 60.000 13.46 6.47 44.99 3.71
48 49 1.762708 GTCTCCCTGACAGAGAGGAG 58.237 60.000 13.46 15.02 46.11 3.69
49 50 0.033601 TCTCCCTGACAGAGAGGAGC 60.034 60.000 13.46 0.00 44.67 4.70
52 53 2.493973 CTGACAGAGAGGAGCGGC 59.506 66.667 0.00 0.00 0.00 6.53
61 62 2.769095 AGAGAGGAGCGGCTAAGAAATT 59.231 45.455 0.60 0.00 0.00 1.82
67 68 2.747446 GAGCGGCTAAGAAATTTCCACA 59.253 45.455 14.61 0.00 0.00 4.17
71 72 3.756434 CGGCTAAGAAATTTCCACAGGAA 59.244 43.478 14.61 0.00 40.27 3.36
78 79 2.770164 ATTTCCACAGGAACGAGAGG 57.230 50.000 0.00 0.00 41.87 3.69
90 91 4.466726 AGGAACGAGAGGTTAATAAGCAGT 59.533 41.667 4.96 0.00 39.50 4.40
116 117 6.094719 GGTCAAAATTCGGTTTACCATTACC 58.905 40.000 0.00 0.00 35.14 2.85
126 127 1.404479 TACCATTACCGGCGCAGGAT 61.404 55.000 33.66 18.83 34.73 3.24
152 154 3.485463 TTACCAGATATGGGCGGAAAG 57.515 47.619 11.86 0.00 0.00 2.62
163 165 1.032794 GGCGGAAAGGGGAATTGATC 58.967 55.000 0.00 0.00 0.00 2.92
184 189 3.041940 GCAACAGTGGCGCTACGT 61.042 61.111 18.69 15.82 0.00 3.57
219 224 2.203549 CTTTGAGGAGGGACAGGGGC 62.204 65.000 0.00 0.00 0.00 5.80
310 322 4.862823 CCCCCTCCCCTCGTCTCC 62.863 77.778 0.00 0.00 0.00 3.71
313 325 4.444081 CCTCCCCTCGTCTCCCGT 62.444 72.222 0.00 0.00 37.94 5.28
353 365 0.760945 CTAGAGCCACCCCGAGGAAT 60.761 60.000 0.00 0.00 36.73 3.01
510 572 4.656117 CGCCGGCAACCCAAAACC 62.656 66.667 28.98 0.00 0.00 3.27
511 573 3.541713 GCCGGCAACCCAAAACCA 61.542 61.111 24.80 0.00 0.00 3.67
512 574 3.095347 GCCGGCAACCCAAAACCAA 62.095 57.895 24.80 0.00 0.00 3.67
513 575 1.522569 CCGGCAACCCAAAACCAAA 59.477 52.632 0.00 0.00 0.00 3.28
514 576 0.107654 CCGGCAACCCAAAACCAAAA 60.108 50.000 0.00 0.00 0.00 2.44
516 578 1.674359 GGCAACCCAAAACCAAAAGG 58.326 50.000 0.00 0.00 0.00 3.11
517 579 1.021202 GCAACCCAAAACCAAAAGGC 58.979 50.000 0.00 0.00 0.00 4.35
518 580 1.674359 CAACCCAAAACCAAAAGGCC 58.326 50.000 0.00 0.00 0.00 5.19
519 581 1.211703 CAACCCAAAACCAAAAGGCCT 59.788 47.619 0.00 0.00 0.00 5.19
520 582 1.128200 ACCCAAAACCAAAAGGCCTC 58.872 50.000 5.23 0.00 0.00 4.70
521 583 0.396435 CCCAAAACCAAAAGGCCTCC 59.604 55.000 5.23 0.00 0.00 4.30
641 716 0.815734 CGACTTAAAGCTCCTCCCGA 59.184 55.000 0.00 0.00 0.00 5.14
652 732 4.214327 CTCCCGAGGAAGCTCGCC 62.214 72.222 0.00 0.00 44.60 5.54
676 756 0.251653 TGCTCGTCTTGGTAGGAGGT 60.252 55.000 0.00 0.00 33.09 3.85
773 871 1.779683 GCCGTTTCCGTCTTCTTCG 59.220 57.895 0.00 0.00 0.00 3.79
807 905 2.223711 GGTATAATTTTGGCACCCTGCG 60.224 50.000 0.00 0.00 46.21 5.18
808 906 1.846007 ATAATTTTGGCACCCTGCGA 58.154 45.000 0.00 0.00 46.21 5.10
823 929 3.393970 CGAAGCTCCTCCCCTGCA 61.394 66.667 0.00 0.00 0.00 4.41
829 935 0.033699 GCTCCTCCCCTGCAAAATCT 60.034 55.000 0.00 0.00 0.00 2.40
830 936 2.021208 GCTCCTCCCCTGCAAAATCTC 61.021 57.143 0.00 0.00 0.00 2.75
833 939 0.749454 CTCCCCTGCAAAATCTCCGG 60.749 60.000 0.00 0.00 0.00 5.14
834 940 2.418083 CCCCTGCAAAATCTCCGGC 61.418 63.158 0.00 0.00 0.00 6.13
839 945 2.121538 GCAAAATCTCCGGCCCCTC 61.122 63.158 0.00 0.00 0.00 4.30
861 982 2.214347 TCATTGCTCGTTTCCGTTTCA 58.786 42.857 0.00 0.00 35.01 2.69
868 989 0.584876 CGTTTCCGTTTCACTGTCCC 59.415 55.000 0.00 0.00 0.00 4.46
872 993 0.395312 TCCGTTTCACTGTCCCCTTC 59.605 55.000 0.00 0.00 0.00 3.46
875 996 0.395312 GTTTCACTGTCCCCTTCCGA 59.605 55.000 0.00 0.00 0.00 4.55
883 1004 0.539986 GTCCCCTTCCGACTGCAATA 59.460 55.000 0.00 0.00 0.00 1.90
894 1020 2.222027 GACTGCAATAAATCTCCCCCG 58.778 52.381 0.00 0.00 0.00 5.73
936 1332 5.918426 TGCAGAAAATGGCATCTTGATAA 57.082 34.783 0.00 0.00 34.58 1.75
941 1337 7.098477 CAGAAAATGGCATCTTGATAAACCAA 58.902 34.615 0.00 0.00 0.00 3.67
966 1388 7.739995 TCTTTGATCCTATTTCTTCTCTCCA 57.260 36.000 0.00 0.00 0.00 3.86
968 1390 7.401493 TCTTTGATCCTATTTCTTCTCTCCACT 59.599 37.037 0.00 0.00 0.00 4.00
995 1417 2.235016 CCAAATCGGTTCTTTGGTCCA 58.765 47.619 6.64 0.00 44.95 4.02
1384 1809 4.479993 CGCCCAAGAGCCTCCAGG 62.480 72.222 0.00 0.00 38.53 4.45
1551 1982 3.119096 GCGAACGGCTCCAACTCC 61.119 66.667 0.00 0.00 39.11 3.85
1552 1983 2.342279 CGAACGGCTCCAACTCCA 59.658 61.111 0.00 0.00 0.00 3.86
1553 1984 1.301401 CGAACGGCTCCAACTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
1554 1985 1.291877 CGAACGGCTCCAACTCCAAG 61.292 60.000 0.00 0.00 0.00 3.61
1555 1986 0.250338 GAACGGCTCCAACTCCAAGT 60.250 55.000 0.00 0.00 0.00 3.16
1556 1987 0.250338 AACGGCTCCAACTCCAAGTC 60.250 55.000 0.00 0.00 0.00 3.01
1839 2270 1.244019 ATTGCAACCTCAAGCCGTCC 61.244 55.000 0.00 0.00 0.00 4.79
1908 2339 0.530650 TTGCGAGGCTGATCGATTCC 60.531 55.000 0.00 1.62 45.56 3.01
1947 2378 3.075005 TCCGGCAGCCTCTACACC 61.075 66.667 10.54 0.00 0.00 4.16
1983 2414 5.977489 ACCAAAGTAGCAGGTAAAAATCC 57.023 39.130 0.00 0.00 32.92 3.01
1987 2418 5.582689 AAGTAGCAGGTAAAAATCCATGC 57.417 39.130 0.00 0.00 33.03 4.06
1991 2422 2.923020 GCAGGTAAAAATCCATGCGTTG 59.077 45.455 0.00 0.00 0.00 4.10
2035 2466 8.669243 GTGCTCAATTCAGCTAAATTTAGTAGT 58.331 33.333 22.94 8.58 40.39 2.73
2102 2537 8.863049 GGTTTGCTTGTCTGTTCATTATAAATG 58.137 33.333 0.00 0.00 0.00 2.32
2165 2602 4.041691 ACTGCAAGGAAGGTAGCTCTAAAA 59.958 41.667 0.00 0.00 39.30 1.52
2166 2603 5.179452 TGCAAGGAAGGTAGCTCTAAAAT 57.821 39.130 0.00 0.00 0.00 1.82
2167 2604 6.070194 ACTGCAAGGAAGGTAGCTCTAAAATA 60.070 38.462 0.00 0.00 39.30 1.40
2169 2606 7.172342 TGCAAGGAAGGTAGCTCTAAAATAAA 58.828 34.615 0.00 0.00 0.00 1.40
2170 2607 7.668052 TGCAAGGAAGGTAGCTCTAAAATAAAA 59.332 33.333 0.00 0.00 0.00 1.52
2171 2608 7.968956 GCAAGGAAGGTAGCTCTAAAATAAAAC 59.031 37.037 0.00 0.00 0.00 2.43
2178 2615 9.121658 AGGTAGCTCTAAAATAAAACTTATGCC 57.878 33.333 0.00 0.00 0.00 4.40
2179 2616 8.068380 GGTAGCTCTAAAATAAAACTTATGCCG 58.932 37.037 0.00 0.00 0.00 5.69
2180 2617 7.027778 AGCTCTAAAATAAAACTTATGCCGG 57.972 36.000 0.00 0.00 0.00 6.13
2181 2618 6.826741 AGCTCTAAAATAAAACTTATGCCGGA 59.173 34.615 5.05 0.00 0.00 5.14
2182 2619 7.502561 AGCTCTAAAATAAAACTTATGCCGGAT 59.497 33.333 5.05 0.00 0.00 4.18
2183 2620 8.135529 GCTCTAAAATAAAACTTATGCCGGATT 58.864 33.333 5.05 0.00 0.00 3.01
2184 2621 9.450807 CTCTAAAATAAAACTTATGCCGGATTG 57.549 33.333 5.05 0.00 0.00 2.67
2185 2622 9.179909 TCTAAAATAAAACTTATGCCGGATTGA 57.820 29.630 5.05 0.00 0.00 2.57
2186 2623 9.450807 CTAAAATAAAACTTATGCCGGATTGAG 57.549 33.333 5.05 0.00 0.00 3.02
2189 2626 5.505173 AAAACTTATGCCGGATTGAGATG 57.495 39.130 5.05 0.00 0.00 2.90
2194 2631 2.198827 TGCCGGATTGAGATGTTTGT 57.801 45.000 5.05 0.00 0.00 2.83
2200 2637 5.563867 GCCGGATTGAGATGTTTGTTGTTAA 60.564 40.000 5.05 0.00 0.00 2.01
2269 2713 7.806487 CACATGCTGCATACTCAATTTTATAGG 59.194 37.037 15.78 0.00 0.00 2.57
2273 2717 8.210946 TGCTGCATACTCAATTTTATAGGTACT 58.789 33.333 0.00 0.00 46.37 2.73
2474 3138 8.640651 TGAACCATAAGCATTGCAACATTATAT 58.359 29.630 11.91 0.00 0.00 0.86
2515 3179 6.907206 AAACAAGTGTTTGACATTCCATTG 57.093 33.333 8.58 0.00 45.55 2.82
2541 3205 6.772360 TTATTGCTTGCATCCATAGTTTCA 57.228 33.333 0.00 0.00 0.00 2.69
2544 3208 5.664294 TGCTTGCATCCATAGTTTCATTT 57.336 34.783 0.00 0.00 0.00 2.32
2575 3239 3.514706 TCCCCAGTTAACAGTGCGTAATA 59.485 43.478 8.61 0.00 0.00 0.98
2678 3342 4.699257 ACGATAAGTAGACTTCACTTCCGT 59.301 41.667 0.00 10.31 38.95 4.69
2774 3438 2.693267 ATCGAAGGTACCCAGCTTTC 57.307 50.000 8.74 4.47 42.47 2.62
3038 3719 9.561069 GTACATCATCAGTAAACTTATGGGAAT 57.439 33.333 4.84 0.00 30.60 3.01
3040 3721 9.479549 ACATCATCAGTAAACTTATGGGAATTT 57.520 29.630 4.84 0.00 30.60 1.82
3044 3725 9.716507 CATCAGTAAACTTATGGGAATTTAACG 57.283 33.333 0.00 0.00 0.00 3.18
3045 3726 8.851541 TCAGTAAACTTATGGGAATTTAACGT 57.148 30.769 0.00 0.00 0.00 3.99
3046 3727 8.723311 TCAGTAAACTTATGGGAATTTAACGTG 58.277 33.333 0.00 0.00 0.00 4.49
3047 3728 7.483691 CAGTAAACTTATGGGAATTTAACGTGC 59.516 37.037 0.00 0.00 0.00 5.34
3048 3729 5.968528 AACTTATGGGAATTTAACGTGCA 57.031 34.783 0.00 0.00 0.00 4.57
3049 3730 5.560966 ACTTATGGGAATTTAACGTGCAG 57.439 39.130 0.00 0.00 0.00 4.41
3050 3731 5.250200 ACTTATGGGAATTTAACGTGCAGA 58.750 37.500 0.00 0.00 0.00 4.26
3051 3732 5.708230 ACTTATGGGAATTTAACGTGCAGAA 59.292 36.000 0.00 0.00 0.00 3.02
3052 3733 6.207810 ACTTATGGGAATTTAACGTGCAGAAA 59.792 34.615 0.00 0.00 0.00 2.52
3053 3734 4.920640 TGGGAATTTAACGTGCAGAAAA 57.079 36.364 0.00 0.00 0.00 2.29
3064 3745 3.065371 ACGTGCAGAAAAGGACTTTCAAG 59.935 43.478 0.00 0.00 45.15 3.02
3068 3749 3.551659 GCAGAAAAGGACTTTCAAGCAGG 60.552 47.826 0.00 0.00 45.15 4.85
3096 3777 7.907389 ACTTTAACCAGATCAGTAACTCATGA 58.093 34.615 0.00 0.00 0.00 3.07
3097 3778 8.543774 ACTTTAACCAGATCAGTAACTCATGAT 58.456 33.333 0.00 0.00 38.84 2.45
3098 3779 9.388506 CTTTAACCAGATCAGTAACTCATGATT 57.611 33.333 0.00 0.00 36.30 2.57
3099 3780 9.739276 TTTAACCAGATCAGTAACTCATGATTT 57.261 29.630 3.60 3.60 36.30 2.17
3140 3821 8.805175 TCATGGTTGATCATCAATTTTACAACT 58.195 29.630 2.67 0.00 38.79 3.16
3141 3822 9.426837 CATGGTTGATCATCAATTTTACAACTT 57.573 29.630 2.67 0.00 38.79 2.66
3147 3828 9.844790 TGATCATCAATTTTACAACTTTAGCTG 57.155 29.630 0.00 0.00 0.00 4.24
3148 3829 9.846248 GATCATCAATTTTACAACTTTAGCTGT 57.154 29.630 0.00 0.00 0.00 4.40
3149 3830 9.846248 ATCATCAATTTTACAACTTTAGCTGTC 57.154 29.630 0.00 0.00 0.00 3.51
3150 3831 9.066892 TCATCAATTTTACAACTTTAGCTGTCT 57.933 29.630 0.00 0.00 0.00 3.41
3151 3832 9.121517 CATCAATTTTACAACTTTAGCTGTCTG 57.878 33.333 0.00 0.00 0.00 3.51
3152 3833 8.220755 TCAATTTTACAACTTTAGCTGTCTGT 57.779 30.769 0.00 0.00 0.00 3.41
3153 3834 9.332502 TCAATTTTACAACTTTAGCTGTCTGTA 57.667 29.630 0.00 0.00 0.00 2.74
3154 3835 9.944663 CAATTTTACAACTTTAGCTGTCTGTAA 57.055 29.630 0.00 0.74 0.00 2.41
3178 3859 8.986477 AATATAAAACTTCAATTCCACTGCAC 57.014 30.769 0.00 0.00 0.00 4.57
3179 3860 6.655078 ATAAAACTTCAATTCCACTGCACT 57.345 33.333 0.00 0.00 0.00 4.40
3180 3861 5.343307 AAAACTTCAATTCCACTGCACTT 57.657 34.783 0.00 0.00 0.00 3.16
3181 3862 3.996150 ACTTCAATTCCACTGCACTTG 57.004 42.857 0.00 0.00 0.00 3.16
3182 3863 2.624838 ACTTCAATTCCACTGCACTTGG 59.375 45.455 3.47 3.47 35.18 3.61
3183 3864 2.363306 TCAATTCCACTGCACTTGGT 57.637 45.000 9.06 0.00 35.42 3.67
3184 3865 3.500448 TCAATTCCACTGCACTTGGTA 57.500 42.857 9.06 1.11 35.42 3.25
3185 3866 3.411446 TCAATTCCACTGCACTTGGTAG 58.589 45.455 9.06 0.31 35.42 3.18
3186 3867 2.489329 CAATTCCACTGCACTTGGTAGG 59.511 50.000 9.06 0.00 35.42 3.18
3187 3868 1.136828 TTCCACTGCACTTGGTAGGT 58.863 50.000 9.06 0.00 35.42 3.08
3188 3869 1.136828 TCCACTGCACTTGGTAGGTT 58.863 50.000 9.06 0.00 35.42 3.50
3189 3870 1.202758 TCCACTGCACTTGGTAGGTTG 60.203 52.381 9.06 0.00 35.42 3.77
3190 3871 1.238439 CACTGCACTTGGTAGGTTGG 58.762 55.000 0.00 0.00 32.86 3.77
3191 3872 0.110486 ACTGCACTTGGTAGGTTGGG 59.890 55.000 0.00 0.00 32.86 4.12
3192 3873 1.228429 TGCACTTGGTAGGTTGGGC 60.228 57.895 0.00 0.00 0.00 5.36
3193 3874 2.332654 GCACTTGGTAGGTTGGGCG 61.333 63.158 0.00 0.00 0.00 6.13
3194 3875 1.373435 CACTTGGTAGGTTGGGCGA 59.627 57.895 0.00 0.00 0.00 5.54
3195 3876 0.035439 CACTTGGTAGGTTGGGCGAT 60.035 55.000 0.00 0.00 0.00 4.58
3196 3877 1.208535 CACTTGGTAGGTTGGGCGATA 59.791 52.381 0.00 0.00 0.00 2.92
3197 3878 1.485066 ACTTGGTAGGTTGGGCGATAG 59.515 52.381 0.00 0.00 0.00 2.08
3198 3879 1.485066 CTTGGTAGGTTGGGCGATAGT 59.515 52.381 0.00 0.00 39.35 2.12
3199 3880 1.575419 TGGTAGGTTGGGCGATAGTT 58.425 50.000 0.00 0.00 39.35 2.24
3200 3881 1.483415 TGGTAGGTTGGGCGATAGTTC 59.517 52.381 0.00 0.00 39.35 3.01
3201 3882 1.202615 GGTAGGTTGGGCGATAGTTCC 60.203 57.143 0.00 0.00 39.35 3.62
3202 3883 0.748450 TAGGTTGGGCGATAGTTCCG 59.252 55.000 0.00 0.00 39.35 4.30
3210 3891 3.888093 CGATAGTTCCGCTTAGGGG 57.112 57.895 9.22 9.22 41.52 4.79
3211 3892 0.319641 CGATAGTTCCGCTTAGGGGC 60.320 60.000 10.72 0.00 41.52 5.80
3212 3893 1.049402 GATAGTTCCGCTTAGGGGCT 58.951 55.000 10.72 5.64 41.52 5.19
3213 3894 2.245582 GATAGTTCCGCTTAGGGGCTA 58.754 52.381 10.72 7.68 41.52 3.93
3214 3895 2.393630 TAGTTCCGCTTAGGGGCTAT 57.606 50.000 10.72 1.26 41.52 2.97
3215 3896 0.759346 AGTTCCGCTTAGGGGCTATG 59.241 55.000 10.72 0.00 41.52 2.23
3216 3897 0.468648 GTTCCGCTTAGGGGCTATGT 59.531 55.000 10.72 0.00 41.52 2.29
3217 3898 1.134189 GTTCCGCTTAGGGGCTATGTT 60.134 52.381 10.72 0.00 41.52 2.71
3218 3899 0.468226 TCCGCTTAGGGGCTATGTTG 59.532 55.000 10.72 0.00 41.52 3.33
3219 3900 1.166531 CCGCTTAGGGGCTATGTTGC 61.167 60.000 1.47 0.00 35.97 4.17
3235 3916 2.664851 GCCTTTGGCGTTTTGGGC 60.665 61.111 0.00 0.00 39.62 5.36
3236 3917 3.137687 CCTTTGGCGTTTTGGGCT 58.862 55.556 0.00 0.00 0.00 5.19
3237 3918 1.300853 CCTTTGGCGTTTTGGGCTG 60.301 57.895 0.00 0.00 0.00 4.85
3238 3919 1.955663 CTTTGGCGTTTTGGGCTGC 60.956 57.895 0.00 0.00 0.00 5.25
3239 3920 2.367868 CTTTGGCGTTTTGGGCTGCT 62.368 55.000 0.00 0.00 0.00 4.24
3240 3921 2.641439 TTTGGCGTTTTGGGCTGCTG 62.641 55.000 0.00 0.00 0.00 4.41
3241 3922 3.605664 GGCGTTTTGGGCTGCTGT 61.606 61.111 0.00 0.00 0.00 4.40
3242 3923 2.355009 GCGTTTTGGGCTGCTGTG 60.355 61.111 0.00 0.00 0.00 3.66
3243 3924 2.355009 CGTTTTGGGCTGCTGTGC 60.355 61.111 0.00 0.00 0.00 4.57
3244 3925 2.355009 GTTTTGGGCTGCTGTGCG 60.355 61.111 0.00 0.00 0.00 5.34
3245 3926 3.604667 TTTTGGGCTGCTGTGCGG 61.605 61.111 0.00 0.00 38.08 5.69
3252 3933 4.695231 CTGCTGTGCGGCTTGTGC 62.695 66.667 0.00 1.33 38.76 4.57
3254 3935 4.395583 GCTGTGCGGCTTGTGCTC 62.396 66.667 0.00 0.00 39.59 4.26
3255 3936 4.081030 CTGTGCGGCTTGTGCTCG 62.081 66.667 0.00 0.00 39.59 5.03
3262 3943 3.360340 GCTTGTGCTCGGCTGCTT 61.360 61.111 0.00 0.00 36.03 3.91
3263 3944 2.912624 GCTTGTGCTCGGCTGCTTT 61.913 57.895 0.00 0.00 36.03 3.51
3264 3945 1.577328 GCTTGTGCTCGGCTGCTTTA 61.577 55.000 0.00 0.00 36.03 1.85
3265 3946 0.445436 CTTGTGCTCGGCTGCTTTAG 59.555 55.000 0.00 0.00 0.00 1.85
3266 3947 0.034756 TTGTGCTCGGCTGCTTTAGA 59.965 50.000 0.00 0.00 0.00 2.10
3267 3948 0.250234 TGTGCTCGGCTGCTTTAGAT 59.750 50.000 0.00 0.00 0.00 1.98
3268 3949 0.933796 GTGCTCGGCTGCTTTAGATC 59.066 55.000 0.00 0.00 0.00 2.75
3269 3950 0.826715 TGCTCGGCTGCTTTAGATCT 59.173 50.000 0.00 0.00 0.00 2.75
3270 3951 1.202463 TGCTCGGCTGCTTTAGATCTC 60.202 52.381 0.00 0.00 0.00 2.75
3271 3952 1.202463 GCTCGGCTGCTTTAGATCTCA 60.202 52.381 0.00 0.00 0.00 3.27
3272 3953 2.741612 CTCGGCTGCTTTAGATCTCAG 58.258 52.381 0.00 1.11 0.00 3.35
3273 3954 1.410517 TCGGCTGCTTTAGATCTCAGG 59.589 52.381 0.00 0.00 0.00 3.86
3274 3955 1.539929 CGGCTGCTTTAGATCTCAGGG 60.540 57.143 0.00 0.00 0.00 4.45
3275 3956 1.592064 GCTGCTTTAGATCTCAGGGC 58.408 55.000 0.00 0.58 0.00 5.19
3276 3957 1.863267 CTGCTTTAGATCTCAGGGCG 58.137 55.000 0.00 0.00 0.00 6.13
3277 3958 1.137872 CTGCTTTAGATCTCAGGGCGT 59.862 52.381 0.00 0.00 0.00 5.68
3278 3959 1.134699 TGCTTTAGATCTCAGGGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
3279 3960 1.576356 CTTTAGATCTCAGGGCGTGC 58.424 55.000 0.00 0.00 0.00 5.34
3280 3961 0.901827 TTTAGATCTCAGGGCGTGCA 59.098 50.000 0.00 0.00 0.00 4.57
3281 3962 1.123077 TTAGATCTCAGGGCGTGCAT 58.877 50.000 0.00 0.00 0.00 3.96
3282 3963 0.676184 TAGATCTCAGGGCGTGCATC 59.324 55.000 0.00 6.59 0.00 3.91
3283 3964 1.953138 GATCTCAGGGCGTGCATCG 60.953 63.158 1.51 0.00 43.12 3.84
3284 3965 2.635229 GATCTCAGGGCGTGCATCGT 62.635 60.000 1.51 0.00 42.13 3.73
3285 3966 2.244117 ATCTCAGGGCGTGCATCGTT 62.244 55.000 1.51 0.00 42.13 3.85
3286 3967 2.434185 TCAGGGCGTGCATCGTTC 60.434 61.111 1.51 4.04 42.13 3.95
3287 3968 2.434884 CAGGGCGTGCATCGTTCT 60.435 61.111 9.76 5.69 42.13 3.01
3288 3969 2.434884 AGGGCGTGCATCGTTCTG 60.435 61.111 9.76 0.00 42.13 3.02
3289 3970 2.434185 GGGCGTGCATCGTTCTGA 60.434 61.111 9.76 0.00 42.13 3.27
3290 3971 2.032634 GGGCGTGCATCGTTCTGAA 61.033 57.895 9.76 0.00 42.13 3.02
3291 3972 1.132640 GGCGTGCATCGTTCTGAAC 59.867 57.895 10.48 10.48 42.13 3.18
3303 3984 1.602377 GTTCTGAACGTGTTTCCCTGG 59.398 52.381 4.57 0.00 32.58 4.45
3304 3985 0.834612 TCTGAACGTGTTTCCCTGGT 59.165 50.000 0.00 0.00 32.58 4.00
3305 3986 1.202604 TCTGAACGTGTTTCCCTGGTC 60.203 52.381 0.00 0.00 32.58 4.02
3306 3987 0.542333 TGAACGTGTTTCCCTGGTCA 59.458 50.000 0.00 0.00 32.58 4.02
3307 3988 1.226746 GAACGTGTTTCCCTGGTCAG 58.773 55.000 0.00 0.00 0.00 3.51
3318 3999 2.959465 CCTGGTCAGGTTTCCTTTCT 57.041 50.000 8.78 0.00 43.61 2.52
3319 4000 2.508526 CCTGGTCAGGTTTCCTTTCTG 58.491 52.381 8.78 0.00 43.61 3.02
3320 4001 2.508526 CTGGTCAGGTTTCCTTTCTGG 58.491 52.381 0.00 0.00 37.10 3.86
3321 4002 1.850345 TGGTCAGGTTTCCTTTCTGGT 59.150 47.619 0.00 0.00 37.07 4.00
3322 4003 3.050089 TGGTCAGGTTTCCTTTCTGGTA 58.950 45.455 0.00 0.00 37.07 3.25
3323 4004 3.072476 TGGTCAGGTTTCCTTTCTGGTAG 59.928 47.826 0.00 0.00 37.07 3.18
3324 4005 3.075148 GTCAGGTTTCCTTTCTGGTAGC 58.925 50.000 0.00 0.00 37.07 3.58
3325 4006 2.979678 TCAGGTTTCCTTTCTGGTAGCT 59.020 45.455 0.00 0.00 37.07 3.32
3326 4007 3.394606 TCAGGTTTCCTTTCTGGTAGCTT 59.605 43.478 0.00 0.00 37.07 3.74
3327 4008 3.503748 CAGGTTTCCTTTCTGGTAGCTTG 59.496 47.826 0.00 0.00 37.07 4.01
3328 4009 3.138468 AGGTTTCCTTTCTGGTAGCTTGT 59.862 43.478 0.00 0.00 37.07 3.16
3329 4010 4.349930 AGGTTTCCTTTCTGGTAGCTTGTA 59.650 41.667 0.00 0.00 37.07 2.41
3330 4011 5.067954 GGTTTCCTTTCTGGTAGCTTGTAA 58.932 41.667 0.00 0.00 37.07 2.41
3331 4012 5.048921 GGTTTCCTTTCTGGTAGCTTGTAAC 60.049 44.000 0.00 0.00 37.07 2.50
3332 4013 4.967084 TCCTTTCTGGTAGCTTGTAACA 57.033 40.909 0.00 0.00 37.07 2.41
3333 4014 4.894784 TCCTTTCTGGTAGCTTGTAACAG 58.105 43.478 0.00 0.00 37.07 3.16
3334 4015 4.591498 TCCTTTCTGGTAGCTTGTAACAGA 59.409 41.667 0.00 0.00 36.49 3.41
3335 4016 4.691216 CCTTTCTGGTAGCTTGTAACAGAC 59.309 45.833 2.08 0.00 37.86 3.51
3336 4017 4.948341 TTCTGGTAGCTTGTAACAGACA 57.052 40.909 2.08 0.00 37.86 3.41
3337 4018 5.483685 TTCTGGTAGCTTGTAACAGACAT 57.516 39.130 2.08 0.00 38.07 3.06
3338 4019 5.483685 TCTGGTAGCTTGTAACAGACATT 57.516 39.130 0.00 0.00 38.07 2.71
3339 4020 5.237815 TCTGGTAGCTTGTAACAGACATTG 58.762 41.667 0.00 0.00 38.07 2.82
3340 4021 4.968259 TGGTAGCTTGTAACAGACATTGT 58.032 39.130 0.00 0.00 43.45 2.71
3341 4022 4.754618 TGGTAGCTTGTAACAGACATTGTG 59.245 41.667 0.00 0.00 40.74 3.33
3342 4023 4.154195 GGTAGCTTGTAACAGACATTGTGG 59.846 45.833 0.00 0.00 40.74 4.17
3343 4024 3.820557 AGCTTGTAACAGACATTGTGGT 58.179 40.909 0.00 0.00 40.74 4.16
3344 4025 4.207165 AGCTTGTAACAGACATTGTGGTT 58.793 39.130 0.00 1.41 40.74 3.67
3345 4026 4.644685 AGCTTGTAACAGACATTGTGGTTT 59.355 37.500 8.28 0.00 40.74 3.27
3346 4027 4.976116 GCTTGTAACAGACATTGTGGTTTC 59.024 41.667 8.28 5.21 40.74 2.78
3347 4028 5.221048 GCTTGTAACAGACATTGTGGTTTCT 60.221 40.000 8.28 0.00 40.74 2.52
3348 4029 5.749596 TGTAACAGACATTGTGGTTTCTG 57.250 39.130 8.28 5.19 40.74 3.02
3349 4030 5.432645 TGTAACAGACATTGTGGTTTCTGA 58.567 37.500 8.86 0.00 40.74 3.27
3350 4031 6.061441 TGTAACAGACATTGTGGTTTCTGAT 58.939 36.000 8.86 1.35 40.74 2.90
3351 4032 7.220740 TGTAACAGACATTGTGGTTTCTGATA 58.779 34.615 8.86 0.55 40.74 2.15
3352 4033 7.882791 TGTAACAGACATTGTGGTTTCTGATAT 59.117 33.333 8.86 0.00 40.74 1.63
3353 4034 9.378551 GTAACAGACATTGTGGTTTCTGATATA 57.621 33.333 8.86 0.00 40.74 0.86
3355 4036 8.442632 ACAGACATTGTGGTTTCTGATATATG 57.557 34.615 8.86 0.00 38.99 1.78
3356 4037 8.267183 ACAGACATTGTGGTTTCTGATATATGA 58.733 33.333 8.86 0.00 38.99 2.15
3357 4038 9.112725 CAGACATTGTGGTTTCTGATATATGAA 57.887 33.333 0.00 0.00 38.19 2.57
3358 4039 9.685276 AGACATTGTGGTTTCTGATATATGAAA 57.315 29.630 0.00 0.00 0.00 2.69
3363 4044 8.153479 TGTGGTTTCTGATATATGAAAATCGG 57.847 34.615 0.00 0.00 34.52 4.18
3364 4045 7.990314 TGTGGTTTCTGATATATGAAAATCGGA 59.010 33.333 0.00 0.00 36.06 4.55
3365 4046 8.499162 GTGGTTTCTGATATATGAAAATCGGAG 58.501 37.037 0.00 0.00 38.43 4.63
3366 4047 8.428852 TGGTTTCTGATATATGAAAATCGGAGA 58.571 33.333 0.00 0.00 38.43 3.71
3367 4048 8.930760 GGTTTCTGATATATGAAAATCGGAGAG 58.069 37.037 0.00 0.00 43.63 3.20
3368 4049 8.930760 GTTTCTGATATATGAAAATCGGAGAGG 58.069 37.037 0.00 0.00 43.63 3.69
3369 4050 6.634805 TCTGATATATGAAAATCGGAGAGGC 58.365 40.000 0.00 0.00 43.63 4.70
3370 4051 5.734720 TGATATATGAAAATCGGAGAGGCC 58.265 41.667 0.00 0.00 43.63 5.19
3379 4060 3.304251 GGAGAGGCCGCTCTCTTT 58.696 61.111 31.89 0.00 46.61 2.52
3380 4061 1.599576 GGAGAGGCCGCTCTCTTTT 59.400 57.895 31.89 0.00 46.61 2.27
3381 4062 0.035915 GGAGAGGCCGCTCTCTTTTT 60.036 55.000 31.89 0.00 46.61 1.94
3382 4063 1.364721 GAGAGGCCGCTCTCTTTTTC 58.635 55.000 27.41 0.91 43.51 2.29
3383 4064 0.687354 AGAGGCCGCTCTCTTTTTCA 59.313 50.000 1.77 0.00 40.93 2.69
3384 4065 1.072331 AGAGGCCGCTCTCTTTTTCAA 59.928 47.619 1.77 0.00 40.93 2.69
3385 4066 1.880027 GAGGCCGCTCTCTTTTTCAAA 59.120 47.619 0.00 0.00 0.00 2.69
3386 4067 2.293399 GAGGCCGCTCTCTTTTTCAAAA 59.707 45.455 0.00 0.00 0.00 2.44
3387 4068 2.693074 AGGCCGCTCTCTTTTTCAAAAA 59.307 40.909 0.00 0.00 0.00 1.94
3459 4140 6.706270 TCTGTTAGATGGTTCAGAACTTCAAC 59.294 38.462 13.13 14.63 34.61 3.18
3467 4148 6.295249 TGGTTCAGAACTTCAACATCATGTA 58.705 36.000 13.13 0.00 0.00 2.29
3508 4192 3.898123 TCAGCTCTTAGGTGTTTCTGAGT 59.102 43.478 6.06 0.00 43.70 3.41
3530 4214 9.844790 TGAGTATTTAGATTCAAACATTTGCTG 57.155 29.630 0.00 0.00 38.05 4.41
3594 4278 2.259818 CTCGGCGTTCTGCTCACT 59.740 61.111 6.85 0.00 45.43 3.41
3615 4299 1.916777 GAAAGACCCCTCGGACCCA 60.917 63.158 0.00 0.00 0.00 4.51
3624 4308 1.369625 CCTCGGACCCATTTTTCTCG 58.630 55.000 0.00 0.00 0.00 4.04
3729 4413 0.635009 TTGTAGGGGAGGAGGTCGAT 59.365 55.000 0.00 0.00 0.00 3.59
3751 4435 1.348008 GGAGGAGATGGTGATGGCCA 61.348 60.000 8.56 8.56 43.48 5.36
3781 4465 1.679305 ATCGTGTGCCTCTCGGAGT 60.679 57.895 4.69 0.00 34.40 3.85
3852 4536 2.100631 CCACAGCTTCTAACCGCCG 61.101 63.158 0.00 0.00 0.00 6.46
3853 4537 1.374252 CACAGCTTCTAACCGCCGT 60.374 57.895 0.00 0.00 0.00 5.68
3872 4581 0.599204 TCGAACTTCAGAACACCCGC 60.599 55.000 0.00 0.00 0.00 6.13
3878 4587 1.667724 CTTCAGAACACCCGCATGATC 59.332 52.381 0.00 0.00 0.00 2.92
3895 4604 2.762887 TGATCTTCCATCTCGCAAGTCT 59.237 45.455 0.00 0.00 39.48 3.24
3948 4674 1.361668 CGCCGAATTCAGTGTCCTGG 61.362 60.000 6.22 0.00 39.31 4.45
3964 4699 1.213678 CCTGGGCTGAATTCAGATGGA 59.786 52.381 34.43 15.75 46.59 3.41
4047 4782 1.881925 GCACATGCTGGTGGTTGAGTA 60.882 52.381 9.76 0.00 39.19 2.59
4330 5078 3.767902 TCATGTCACATGTCTCACCAA 57.232 42.857 17.51 0.00 0.00 3.67
4410 5160 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4412 5162 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4502 5262 2.412089 GTGCGAAGTAACAGGCTAACAG 59.588 50.000 0.00 0.00 0.00 3.16
4510 5270 0.037303 ACAGGCTAACAGCACAGCAT 59.963 50.000 0.00 0.00 44.75 3.79
4512 5272 2.092753 ACAGGCTAACAGCACAGCATAT 60.093 45.455 0.00 0.00 44.75 1.78
4546 5501 0.179020 AGGCTAACAGCACAGCACAA 60.179 50.000 0.00 0.00 44.75 3.33
4548 5503 0.384725 GCTAACAGCACAGCACAACG 60.385 55.000 0.00 0.00 41.89 4.10
4549 5504 0.937304 CTAACAGCACAGCACAACGT 59.063 50.000 0.00 0.00 0.00 3.99
4550 5505 2.131972 CTAACAGCACAGCACAACGTA 58.868 47.619 0.00 0.00 0.00 3.57
4557 5512 4.788100 CAGCACAGCACAACGTATTTATTC 59.212 41.667 0.00 0.00 0.00 1.75
4596 5560 2.030451 CACTTTTTCTGCCCTCTCAAGC 60.030 50.000 0.00 0.00 0.00 4.01
4597 5561 1.543358 CTTTTTCTGCCCTCTCAAGCC 59.457 52.381 0.00 0.00 0.00 4.35
4598 5562 0.478072 TTTTCTGCCCTCTCAAGCCA 59.522 50.000 0.00 0.00 0.00 4.75
4599 5563 0.700564 TTTCTGCCCTCTCAAGCCAT 59.299 50.000 0.00 0.00 0.00 4.40
4600 5564 0.254178 TTCTGCCCTCTCAAGCCATC 59.746 55.000 0.00 0.00 0.00 3.51
4601 5565 0.911045 TCTGCCCTCTCAAGCCATCA 60.911 55.000 0.00 0.00 0.00 3.07
4602 5566 0.034767 CTGCCCTCTCAAGCCATCAA 60.035 55.000 0.00 0.00 0.00 2.57
4603 5567 0.627451 TGCCCTCTCAAGCCATCAAT 59.373 50.000 0.00 0.00 0.00 2.57
4669 5633 1.842546 GATCGATTTGCAAAAGCTCGC 59.157 47.619 22.61 10.66 0.00 5.03
4684 5648 2.076863 GCTCGCAAGTAACCACAGATT 58.923 47.619 0.00 0.00 39.48 2.40
4690 5654 4.494690 CGCAAGTAACCACAGATTGCTATG 60.495 45.833 6.64 0.00 43.09 2.23
4693 5657 2.401583 AACCACAGATTGCTATGCGA 57.598 45.000 0.00 0.00 0.00 5.10
4778 5742 0.679505 TGTCCAAGAGACCAACGGAG 59.320 55.000 0.00 0.00 45.68 4.63
4792 5757 1.751437 ACGGAGAAAAATAGGGCAGC 58.249 50.000 0.00 0.00 0.00 5.25
4796 5761 2.492088 GGAGAAAAATAGGGCAGCGTTT 59.508 45.455 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.445436 CGCTGAATGGACTGTTGCTC 59.555 55.000 0.00 0.00 0.00 4.26
1 2 0.957395 CCGCTGAATGGACTGTTGCT 60.957 55.000 0.00 0.00 0.00 3.91
2 3 0.955428 TCCGCTGAATGGACTGTTGC 60.955 55.000 0.00 0.00 0.00 4.17
3 4 1.742761 ATCCGCTGAATGGACTGTTG 58.257 50.000 0.00 0.00 38.60 3.33
4 5 3.270877 GTTATCCGCTGAATGGACTGTT 58.729 45.455 0.00 0.00 38.60 3.16
5 6 2.420129 GGTTATCCGCTGAATGGACTGT 60.420 50.000 0.00 0.00 38.60 3.55
6 7 2.213499 GGTTATCCGCTGAATGGACTG 58.787 52.381 0.00 0.00 38.60 3.51
7 8 1.837439 TGGTTATCCGCTGAATGGACT 59.163 47.619 0.00 0.00 38.60 3.85
8 9 1.940613 GTGGTTATCCGCTGAATGGAC 59.059 52.381 0.00 0.00 38.60 4.02
9 10 1.472552 CGTGGTTATCCGCTGAATGGA 60.473 52.381 2.05 0.00 41.65 3.41
10 11 0.937304 CGTGGTTATCCGCTGAATGG 59.063 55.000 2.05 0.00 41.65 3.16
11 12 1.593006 GACGTGGTTATCCGCTGAATG 59.407 52.381 0.00 0.00 41.65 2.67
12 13 1.480954 AGACGTGGTTATCCGCTGAAT 59.519 47.619 0.00 0.00 41.65 2.57
13 14 0.892755 AGACGTGGTTATCCGCTGAA 59.107 50.000 0.00 0.00 41.65 3.02
14 15 0.454600 GAGACGTGGTTATCCGCTGA 59.545 55.000 0.00 0.00 41.65 4.26
15 16 0.527817 GGAGACGTGGTTATCCGCTG 60.528 60.000 0.00 0.00 41.65 5.18
16 17 1.673808 GGGAGACGTGGTTATCCGCT 61.674 60.000 0.00 0.00 41.65 5.52
17 18 1.227176 GGGAGACGTGGTTATCCGC 60.227 63.158 0.00 0.00 40.52 5.54
18 19 0.102481 CAGGGAGACGTGGTTATCCG 59.898 60.000 0.00 0.00 42.41 4.18
19 20 1.136500 GTCAGGGAGACGTGGTTATCC 59.864 57.143 0.00 0.00 46.03 2.59
20 21 2.580966 GTCAGGGAGACGTGGTTATC 57.419 55.000 0.00 0.00 46.03 1.75
29 30 1.762708 CTCCTCTCTGTCAGGGAGAC 58.237 60.000 28.36 0.00 45.79 3.36
30 31 0.033601 GCTCCTCTCTGTCAGGGAGA 60.034 60.000 28.36 14.57 45.79 3.71
31 32 1.383456 CGCTCCTCTCTGTCAGGGAG 61.383 65.000 21.26 21.26 45.71 4.30
32 33 1.379176 CGCTCCTCTCTGTCAGGGA 60.379 63.158 1.56 1.56 0.00 4.20
33 34 2.422231 CCGCTCCTCTCTGTCAGGG 61.422 68.421 0.00 0.00 0.00 4.45
34 35 3.074999 GCCGCTCCTCTCTGTCAGG 62.075 68.421 0.00 0.00 0.00 3.86
35 36 0.749818 TAGCCGCTCCTCTCTGTCAG 60.750 60.000 0.00 0.00 0.00 3.51
36 37 0.323451 TTAGCCGCTCCTCTCTGTCA 60.323 55.000 0.00 0.00 0.00 3.58
37 38 0.383949 CTTAGCCGCTCCTCTCTGTC 59.616 60.000 0.00 0.00 0.00 3.51
38 39 0.033991 TCTTAGCCGCTCCTCTCTGT 60.034 55.000 0.00 0.00 0.00 3.41
39 40 1.107114 TTCTTAGCCGCTCCTCTCTG 58.893 55.000 0.00 0.00 0.00 3.35
40 41 1.853963 TTTCTTAGCCGCTCCTCTCT 58.146 50.000 0.00 0.00 0.00 3.10
41 42 2.900716 ATTTCTTAGCCGCTCCTCTC 57.099 50.000 0.00 0.00 0.00 3.20
42 43 3.536570 GAAATTTCTTAGCCGCTCCTCT 58.463 45.455 11.05 0.00 0.00 3.69
43 44 2.614520 GGAAATTTCTTAGCCGCTCCTC 59.385 50.000 17.42 0.00 0.00 3.71
44 45 2.026262 TGGAAATTTCTTAGCCGCTCCT 60.026 45.455 17.42 0.00 0.00 3.69
45 46 2.097629 GTGGAAATTTCTTAGCCGCTCC 59.902 50.000 17.42 0.00 0.00 4.70
46 47 2.747446 TGTGGAAATTTCTTAGCCGCTC 59.253 45.455 17.42 1.67 0.00 5.03
47 48 2.749621 CTGTGGAAATTTCTTAGCCGCT 59.250 45.455 17.42 0.00 0.00 5.52
48 49 2.159379 CCTGTGGAAATTTCTTAGCCGC 60.159 50.000 17.42 8.55 0.00 6.53
49 50 3.343617 TCCTGTGGAAATTTCTTAGCCG 58.656 45.455 17.42 2.50 0.00 5.52
52 53 5.932303 TCTCGTTCCTGTGGAAATTTCTTAG 59.068 40.000 17.42 12.37 43.86 2.18
61 62 1.420430 AACCTCTCGTTCCTGTGGAA 58.580 50.000 0.00 0.00 39.66 3.53
67 68 4.466726 ACTGCTTATTAACCTCTCGTTCCT 59.533 41.667 0.00 0.00 35.79 3.36
71 72 3.181489 CCGACTGCTTATTAACCTCTCGT 60.181 47.826 0.00 0.00 0.00 4.18
78 79 6.464834 CGAATTTTGACCGACTGCTTATTAAC 59.535 38.462 0.00 0.00 0.00 2.01
90 91 3.474600 TGGTAAACCGAATTTTGACCGA 58.525 40.909 0.00 0.00 39.43 4.69
116 117 1.268539 GGTAAATTTCATCCTGCGCCG 60.269 52.381 4.18 0.00 0.00 6.46
126 127 4.141287 CCGCCCATATCTGGTAAATTTCA 58.859 43.478 0.00 0.00 41.37 2.69
152 154 2.118404 TTGCCGCGATCAATTCCCC 61.118 57.895 8.23 0.00 0.00 4.81
219 224 4.443034 CCTGTCCCCGAAAACCTATTCTAG 60.443 50.000 0.00 0.00 0.00 2.43
262 268 4.849310 GCAGGGGCGCGTGGATAA 62.849 66.667 22.70 0.00 0.00 1.75
310 322 3.822607 GCAGATAGCATAGGGACGG 57.177 57.895 0.00 0.00 44.79 4.79
353 365 2.837411 TGGGTTTACCACGGTCTCA 58.163 52.632 0.69 0.00 46.80 3.27
416 457 1.479709 CAGACATTCTCCTCCCTCGT 58.520 55.000 0.00 0.00 0.00 4.18
417 458 0.749649 CCAGACATTCTCCTCCCTCG 59.250 60.000 0.00 0.00 0.00 4.63
418 459 1.872773 ACCAGACATTCTCCTCCCTC 58.127 55.000 0.00 0.00 0.00 4.30
419 460 2.192263 GAACCAGACATTCTCCTCCCT 58.808 52.381 0.00 0.00 0.00 4.20
509 571 2.751837 GCGAGGGAGGCCTTTTGG 60.752 66.667 6.77 0.00 44.18 3.28
516 578 2.558380 ATCAAAAGGGCGAGGGAGGC 62.558 60.000 0.00 0.00 0.00 4.70
517 579 0.034089 AATCAAAAGGGCGAGGGAGG 60.034 55.000 0.00 0.00 0.00 4.30
518 580 1.383523 GAATCAAAAGGGCGAGGGAG 58.616 55.000 0.00 0.00 0.00 4.30
519 581 0.034477 GGAATCAAAAGGGCGAGGGA 60.034 55.000 0.00 0.00 0.00 4.20
520 582 1.037579 GGGAATCAAAAGGGCGAGGG 61.038 60.000 0.00 0.00 0.00 4.30
521 583 1.037579 GGGGAATCAAAAGGGCGAGG 61.038 60.000 0.00 0.00 0.00 4.63
574 636 3.036429 AATCCCAGGCTCTCACGGC 62.036 63.158 0.00 0.00 0.00 5.68
652 732 2.890847 CTACCAAGACGAGCAGGCGG 62.891 65.000 0.00 0.00 35.12 6.13
657 737 0.251653 ACCTCCTACCAAGACGAGCA 60.252 55.000 0.00 0.00 0.00 4.26
722 814 2.583520 CTCCTCCTCCACAGCAGC 59.416 66.667 0.00 0.00 0.00 5.25
727 819 2.284921 CCCTGCTCCTCCTCCACA 60.285 66.667 0.00 0.00 0.00 4.17
773 871 3.599046 ATTATACCTGACGACGACGAC 57.401 47.619 15.32 8.68 42.66 4.34
807 905 0.251341 TTTTGCAGGGGAGGAGCTTC 60.251 55.000 0.00 0.00 0.00 3.86
808 906 0.411058 ATTTTGCAGGGGAGGAGCTT 59.589 50.000 0.00 0.00 0.00 3.74
817 923 2.418083 GGCCGGAGATTTTGCAGGG 61.418 63.158 5.05 0.00 0.00 4.45
823 929 0.256177 GAAGAGGGGCCGGAGATTTT 59.744 55.000 5.05 0.00 0.00 1.82
829 935 2.998097 CAATGAAGAGGGGCCGGA 59.002 61.111 5.05 0.00 0.00 5.14
830 936 2.830370 GCAATGAAGAGGGGCCGG 60.830 66.667 0.00 0.00 0.00 6.13
833 939 0.678048 AACGAGCAATGAAGAGGGGC 60.678 55.000 0.00 0.00 0.00 5.80
834 940 1.740025 GAAACGAGCAATGAAGAGGGG 59.260 52.381 0.00 0.00 0.00 4.79
861 982 2.584391 GCAGTCGGAAGGGGACAGT 61.584 63.158 0.00 0.00 36.87 3.55
868 989 3.561725 GGAGATTTATTGCAGTCGGAAGG 59.438 47.826 0.00 0.00 0.00 3.46
872 993 2.222027 GGGGAGATTTATTGCAGTCGG 58.778 52.381 0.00 0.00 0.00 4.79
875 996 1.564348 ACGGGGGAGATTTATTGCAGT 59.436 47.619 0.00 0.00 0.00 4.40
883 1004 3.886123 CTTATCAACACGGGGGAGATTT 58.114 45.455 0.00 0.00 0.00 2.17
894 1020 4.168760 GCATGGTTCTTGCTTATCAACAC 58.831 43.478 0.00 0.00 37.14 3.32
936 1332 9.183368 GAGAAGAAATAGGATCAAAGATTGGTT 57.817 33.333 0.00 0.00 0.00 3.67
941 1337 8.210265 GTGGAGAGAAGAAATAGGATCAAAGAT 58.790 37.037 0.00 0.00 0.00 2.40
994 1416 4.873810 TCCCGGCGCCATTGGATG 62.874 66.667 28.98 7.87 0.00 3.51
995 1417 4.569180 CTCCCGGCGCCATTGGAT 62.569 66.667 28.98 0.00 0.00 3.41
1030 1455 2.425247 GGGTTTTGGTAGGGTTCTTGGT 60.425 50.000 0.00 0.00 0.00 3.67
1538 1969 1.371558 GACTTGGAGTTGGAGCCGT 59.628 57.895 0.00 0.00 0.00 5.68
1548 1979 3.786101 CGCATGTCGGACTTGGAG 58.214 61.111 21.18 5.24 33.78 3.86
1839 2270 2.022195 CCTTCCTCCAGCATCACATTG 58.978 52.381 0.00 0.00 0.00 2.82
1900 2331 1.227263 CAGGCGAACCGGAATCGAT 60.227 57.895 29.31 17.87 42.76 3.59
1924 2355 4.803426 GAGGCTGCCGGACGACTG 62.803 72.222 13.96 0.00 0.00 3.51
1947 2378 0.037326 TTTGGTAGCACTCTGGAGCG 60.037 55.000 0.00 0.00 34.32 5.03
2102 2537 7.985589 TCCTAGGTTTAATTTCCCCTCATATC 58.014 38.462 9.08 0.00 0.00 1.63
2147 2584 9.809395 AAGTTTTATTTTAGAGCTACCTTCCTT 57.191 29.630 0.00 0.00 0.00 3.36
2165 2602 6.772716 ACATCTCAATCCGGCATAAGTTTTAT 59.227 34.615 0.00 0.00 0.00 1.40
2166 2603 6.119536 ACATCTCAATCCGGCATAAGTTTTA 58.880 36.000 0.00 0.00 0.00 1.52
2167 2604 4.949856 ACATCTCAATCCGGCATAAGTTTT 59.050 37.500 0.00 0.00 0.00 2.43
2169 2606 4.156455 ACATCTCAATCCGGCATAAGTT 57.844 40.909 0.00 0.00 0.00 2.66
2170 2607 3.845781 ACATCTCAATCCGGCATAAGT 57.154 42.857 0.00 0.00 0.00 2.24
2171 2608 4.336433 ACAAACATCTCAATCCGGCATAAG 59.664 41.667 0.00 0.00 0.00 1.73
2174 2611 2.726821 ACAAACATCTCAATCCGGCAT 58.273 42.857 0.00 0.00 0.00 4.40
2175 2612 2.198827 ACAAACATCTCAATCCGGCA 57.801 45.000 0.00 0.00 0.00 5.69
2176 2613 2.228822 ACAACAAACATCTCAATCCGGC 59.771 45.455 0.00 0.00 0.00 6.13
2177 2614 4.503741 AACAACAAACATCTCAATCCGG 57.496 40.909 0.00 0.00 0.00 5.14
2178 2615 8.519492 AATTTAACAACAAACATCTCAATCCG 57.481 30.769 0.00 0.00 0.00 4.18
2245 2686 7.879070 ACCTATAAAATTGAGTATGCAGCATG 58.121 34.615 18.81 0.00 40.87 4.06
2269 2713 9.893305 AAATACATTGAGTTGTTTGCTTAGTAC 57.107 29.630 0.00 0.00 0.00 2.73
2273 2717 8.845227 TCTGAAATACATTGAGTTGTTTGCTTA 58.155 29.630 0.00 0.00 0.00 3.09
2379 2830 8.482943 TGTTAGTTGCCAGATGTATAAGTATGT 58.517 33.333 0.00 0.00 0.00 2.29
2481 3145 9.344772 TGTCAAACACTTGTTTTGGTAGTATAT 57.655 29.630 4.56 0.00 45.07 0.86
2541 3205 5.600484 TGTTAACTGGGGACACAAATCAAAT 59.400 36.000 7.22 0.00 35.60 2.32
2544 3208 4.141287 CTGTTAACTGGGGACACAAATCA 58.859 43.478 7.22 0.00 35.60 2.57
2575 3239 3.384467 ACAACAGTGTTTGCTAGCCAATT 59.616 39.130 13.29 0.00 32.58 2.32
2643 3307 5.795939 GTCTACTTATCGTCAACACAGTCAG 59.204 44.000 0.00 0.00 0.00 3.51
2678 3342 8.937884 CATTTCACTGATTAAATTCAAATGGCA 58.062 29.630 0.00 0.00 0.00 4.92
2746 3410 2.835027 GGTACCTTCGATTAAGCCCTG 58.165 52.381 4.06 0.00 33.49 4.45
2774 3438 5.613358 AGATTCTCCAGTTACAAAAAGCG 57.387 39.130 0.00 0.00 0.00 4.68
2850 3514 3.788227 TGCGGGAATATATGGAAAGCT 57.212 42.857 0.00 0.00 0.00 3.74
2947 3612 7.571919 TCCTCAAAGCATCTATTCTCTGATTT 58.428 34.615 0.00 0.00 0.00 2.17
3038 3719 5.124138 TGAAAGTCCTTTTCTGCACGTTAAA 59.876 36.000 0.00 0.00 44.49 1.52
3039 3720 4.636648 TGAAAGTCCTTTTCTGCACGTTAA 59.363 37.500 0.00 0.00 44.49 2.01
3040 3721 4.193090 TGAAAGTCCTTTTCTGCACGTTA 58.807 39.130 0.00 0.00 44.49 3.18
3041 3722 3.013921 TGAAAGTCCTTTTCTGCACGTT 58.986 40.909 0.00 0.00 44.49 3.99
3042 3723 2.639065 TGAAAGTCCTTTTCTGCACGT 58.361 42.857 0.00 0.00 44.49 4.49
3043 3724 3.621794 CTTGAAAGTCCTTTTCTGCACG 58.378 45.455 0.00 0.00 44.49 5.34
3044 3725 3.181487 TGCTTGAAAGTCCTTTTCTGCAC 60.181 43.478 12.81 0.00 43.61 4.57
3045 3726 3.023119 TGCTTGAAAGTCCTTTTCTGCA 58.977 40.909 12.81 12.81 44.82 4.41
3046 3727 3.551659 CCTGCTTGAAAGTCCTTTTCTGC 60.552 47.826 0.00 6.33 44.49 4.26
3047 3728 3.551659 GCCTGCTTGAAAGTCCTTTTCTG 60.552 47.826 0.00 0.00 44.49 3.02
3048 3729 2.625314 GCCTGCTTGAAAGTCCTTTTCT 59.375 45.455 0.00 0.00 44.49 2.52
3049 3730 2.625314 AGCCTGCTTGAAAGTCCTTTTC 59.375 45.455 0.00 0.00 44.45 2.29
3050 3731 2.670939 AGCCTGCTTGAAAGTCCTTTT 58.329 42.857 0.00 0.00 32.11 2.27
3051 3732 2.371658 AGCCTGCTTGAAAGTCCTTT 57.628 45.000 0.00 0.00 35.14 3.11
3052 3733 2.373502 AGTAGCCTGCTTGAAAGTCCTT 59.626 45.455 0.00 0.00 0.00 3.36
3053 3734 1.981495 AGTAGCCTGCTTGAAAGTCCT 59.019 47.619 0.00 0.00 0.00 3.85
3064 3745 3.873910 TGATCTGGTTAAAGTAGCCTGC 58.126 45.455 0.00 0.00 0.00 4.85
3068 3749 7.321153 TGAGTTACTGATCTGGTTAAAGTAGC 58.679 38.462 4.49 0.00 0.00 3.58
3153 3834 8.806146 AGTGCAGTGGAATTGAAGTTTTATATT 58.194 29.630 0.00 0.00 0.00 1.28
3154 3835 8.353423 AGTGCAGTGGAATTGAAGTTTTATAT 57.647 30.769 0.00 0.00 0.00 0.86
3155 3836 7.759489 AGTGCAGTGGAATTGAAGTTTTATA 57.241 32.000 0.00 0.00 0.00 0.98
3156 3837 6.655078 AGTGCAGTGGAATTGAAGTTTTAT 57.345 33.333 0.00 0.00 0.00 1.40
3157 3838 6.272318 CAAGTGCAGTGGAATTGAAGTTTTA 58.728 36.000 18.54 0.00 0.00 1.52
3158 3839 5.111293 CAAGTGCAGTGGAATTGAAGTTTT 58.889 37.500 18.54 0.00 0.00 2.43
3159 3840 4.441913 CCAAGTGCAGTGGAATTGAAGTTT 60.442 41.667 23.90 0.00 38.54 2.66
3160 3841 3.068590 CCAAGTGCAGTGGAATTGAAGTT 59.931 43.478 23.90 0.00 38.54 2.66
3161 3842 2.624838 CCAAGTGCAGTGGAATTGAAGT 59.375 45.455 23.90 0.00 38.54 3.01
3162 3843 2.624838 ACCAAGTGCAGTGGAATTGAAG 59.375 45.455 23.90 11.95 39.62 3.02
3163 3844 2.665165 ACCAAGTGCAGTGGAATTGAA 58.335 42.857 23.90 0.00 39.62 2.69
3164 3845 2.363306 ACCAAGTGCAGTGGAATTGA 57.637 45.000 23.90 0.00 39.62 2.57
3165 3846 2.489329 CCTACCAAGTGCAGTGGAATTG 59.511 50.000 20.71 16.72 39.62 2.32
3166 3847 2.108250 ACCTACCAAGTGCAGTGGAATT 59.892 45.455 20.71 0.00 39.62 2.17
3167 3848 1.705186 ACCTACCAAGTGCAGTGGAAT 59.295 47.619 20.71 4.40 39.62 3.01
3168 3849 1.136828 ACCTACCAAGTGCAGTGGAA 58.863 50.000 20.71 0.00 39.62 3.53
3169 3850 1.136828 AACCTACCAAGTGCAGTGGA 58.863 50.000 20.71 6.01 39.62 4.02
3170 3851 1.238439 CAACCTACCAAGTGCAGTGG 58.762 55.000 13.71 13.71 42.28 4.00
3171 3852 1.238439 CCAACCTACCAAGTGCAGTG 58.762 55.000 0.00 0.00 0.00 3.66
3172 3853 0.110486 CCCAACCTACCAAGTGCAGT 59.890 55.000 0.00 0.00 0.00 4.40
3173 3854 1.244019 GCCCAACCTACCAAGTGCAG 61.244 60.000 0.00 0.00 0.00 4.41
3174 3855 1.228429 GCCCAACCTACCAAGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
3175 3856 2.332654 CGCCCAACCTACCAAGTGC 61.333 63.158 0.00 0.00 0.00 4.40
3176 3857 0.035439 ATCGCCCAACCTACCAAGTG 60.035 55.000 0.00 0.00 0.00 3.16
3177 3858 1.485066 CTATCGCCCAACCTACCAAGT 59.515 52.381 0.00 0.00 0.00 3.16
3178 3859 1.485066 ACTATCGCCCAACCTACCAAG 59.515 52.381 0.00 0.00 0.00 3.61
3179 3860 1.575419 ACTATCGCCCAACCTACCAA 58.425 50.000 0.00 0.00 0.00 3.67
3180 3861 1.483415 GAACTATCGCCCAACCTACCA 59.517 52.381 0.00 0.00 0.00 3.25
3181 3862 1.202615 GGAACTATCGCCCAACCTACC 60.203 57.143 0.00 0.00 0.00 3.18
3182 3863 1.537562 CGGAACTATCGCCCAACCTAC 60.538 57.143 0.00 0.00 0.00 3.18
3183 3864 0.748450 CGGAACTATCGCCCAACCTA 59.252 55.000 0.00 0.00 0.00 3.08
3184 3865 1.520666 CGGAACTATCGCCCAACCT 59.479 57.895 0.00 0.00 0.00 3.50
3185 3866 2.178235 GCGGAACTATCGCCCAACC 61.178 63.158 0.00 0.00 46.55 3.77
3186 3867 3.406559 GCGGAACTATCGCCCAAC 58.593 61.111 0.00 0.00 46.55 3.77
3192 3873 0.319641 GCCCCTAAGCGGAACTATCG 60.320 60.000 0.00 0.00 33.16 2.92
3193 3874 1.049402 AGCCCCTAAGCGGAACTATC 58.951 55.000 0.00 0.00 38.01 2.08
3194 3875 2.393630 TAGCCCCTAAGCGGAACTAT 57.606 50.000 0.00 0.00 38.01 2.12
3195 3876 1.968493 CATAGCCCCTAAGCGGAACTA 59.032 52.381 0.00 0.00 38.01 2.24
3196 3877 0.759346 CATAGCCCCTAAGCGGAACT 59.241 55.000 0.00 0.00 38.01 3.01
3197 3878 0.468648 ACATAGCCCCTAAGCGGAAC 59.531 55.000 0.00 0.00 38.01 3.62
3198 3879 1.134220 CAACATAGCCCCTAAGCGGAA 60.134 52.381 0.00 0.00 38.01 4.30
3199 3880 0.468226 CAACATAGCCCCTAAGCGGA 59.532 55.000 0.00 0.00 38.01 5.54
3200 3881 1.166531 GCAACATAGCCCCTAAGCGG 61.167 60.000 0.00 0.00 38.01 5.52
3201 3882 2.321213 GCAACATAGCCCCTAAGCG 58.679 57.895 0.00 0.00 38.01 4.68
3218 3899 2.664851 GCCCAAAACGCCAAAGGC 60.665 61.111 0.00 0.00 46.75 4.35
3219 3900 1.300853 CAGCCCAAAACGCCAAAGG 60.301 57.895 0.00 0.00 0.00 3.11
3220 3901 1.955663 GCAGCCCAAAACGCCAAAG 60.956 57.895 0.00 0.00 0.00 2.77
3221 3902 2.107953 GCAGCCCAAAACGCCAAA 59.892 55.556 0.00 0.00 0.00 3.28
3222 3903 2.837291 AGCAGCCCAAAACGCCAA 60.837 55.556 0.00 0.00 0.00 4.52
3223 3904 3.604667 CAGCAGCCCAAAACGCCA 61.605 61.111 0.00 0.00 0.00 5.69
3224 3905 3.605664 ACAGCAGCCCAAAACGCC 61.606 61.111 0.00 0.00 0.00 5.68
3225 3906 2.355009 CACAGCAGCCCAAAACGC 60.355 61.111 0.00 0.00 0.00 4.84
3226 3907 2.355009 GCACAGCAGCCCAAAACG 60.355 61.111 0.00 0.00 0.00 3.60
3227 3908 2.355009 CGCACAGCAGCCCAAAAC 60.355 61.111 0.00 0.00 0.00 2.43
3228 3909 3.604667 CCGCACAGCAGCCCAAAA 61.605 61.111 0.00 0.00 0.00 2.44
3234 3915 4.695231 CACAAGCCGCACAGCAGC 62.695 66.667 0.00 0.00 34.23 5.25
3235 3916 4.695231 GCACAAGCCGCACAGCAG 62.695 66.667 0.00 0.00 34.23 4.24
3237 3918 4.395583 GAGCACAAGCCGCACAGC 62.396 66.667 0.00 0.00 43.56 4.40
3238 3919 4.081030 CGAGCACAAGCCGCACAG 62.081 66.667 0.00 0.00 43.56 3.66
3245 3926 1.577328 TAAAGCAGCCGAGCACAAGC 61.577 55.000 0.00 0.00 42.56 4.01
3246 3927 0.445436 CTAAAGCAGCCGAGCACAAG 59.555 55.000 0.00 0.00 36.85 3.16
3247 3928 0.034756 TCTAAAGCAGCCGAGCACAA 59.965 50.000 0.00 0.00 36.85 3.33
3248 3929 0.250234 ATCTAAAGCAGCCGAGCACA 59.750 50.000 0.00 0.00 36.85 4.57
3249 3930 0.933796 GATCTAAAGCAGCCGAGCAC 59.066 55.000 0.00 0.00 36.85 4.40
3250 3931 0.826715 AGATCTAAAGCAGCCGAGCA 59.173 50.000 0.00 0.00 36.85 4.26
3251 3932 1.202463 TGAGATCTAAAGCAGCCGAGC 60.202 52.381 0.00 0.00 0.00 5.03
3252 3933 2.545532 CCTGAGATCTAAAGCAGCCGAG 60.546 54.545 0.00 0.00 0.00 4.63
3253 3934 1.410517 CCTGAGATCTAAAGCAGCCGA 59.589 52.381 0.00 0.00 0.00 5.54
3254 3935 1.539929 CCCTGAGATCTAAAGCAGCCG 60.540 57.143 0.00 0.00 0.00 5.52
3255 3936 1.813477 GCCCTGAGATCTAAAGCAGCC 60.813 57.143 0.00 0.00 0.00 4.85
3256 3937 1.592064 GCCCTGAGATCTAAAGCAGC 58.408 55.000 0.00 0.00 0.00 5.25
3257 3938 1.137872 ACGCCCTGAGATCTAAAGCAG 59.862 52.381 0.00 0.00 0.00 4.24
3258 3939 1.134699 CACGCCCTGAGATCTAAAGCA 60.135 52.381 0.00 0.00 0.00 3.91
3259 3940 1.576356 CACGCCCTGAGATCTAAAGC 58.424 55.000 0.00 0.00 0.00 3.51
3260 3941 1.134699 TGCACGCCCTGAGATCTAAAG 60.135 52.381 0.00 0.00 0.00 1.85
3261 3942 0.901827 TGCACGCCCTGAGATCTAAA 59.098 50.000 0.00 0.00 0.00 1.85
3262 3943 1.069204 GATGCACGCCCTGAGATCTAA 59.931 52.381 0.00 0.00 0.00 2.10
3263 3944 0.676184 GATGCACGCCCTGAGATCTA 59.324 55.000 0.00 0.00 0.00 1.98
3264 3945 1.445095 GATGCACGCCCTGAGATCT 59.555 57.895 0.00 0.00 0.00 2.75
3265 3946 1.953138 CGATGCACGCCCTGAGATC 60.953 63.158 0.00 0.00 34.51 2.75
3266 3947 2.107750 CGATGCACGCCCTGAGAT 59.892 61.111 0.00 0.00 34.51 2.75
3267 3948 2.835701 GAACGATGCACGCCCTGAGA 62.836 60.000 8.31 0.00 46.94 3.27
3268 3949 2.434884 AACGATGCACGCCCTGAG 60.435 61.111 8.31 0.00 46.94 3.35
3269 3950 2.434185 GAACGATGCACGCCCTGA 60.434 61.111 8.31 0.00 46.94 3.86
3270 3951 2.434884 AGAACGATGCACGCCCTG 60.435 61.111 8.31 0.00 46.94 4.45
3271 3952 2.434884 CAGAACGATGCACGCCCT 60.435 61.111 8.31 3.91 46.94 5.19
3272 3953 2.032634 TTCAGAACGATGCACGCCC 61.033 57.895 8.31 1.99 46.94 6.13
3273 3954 1.132640 GTTCAGAACGATGCACGCC 59.867 57.895 0.00 2.28 46.94 5.68
3274 3955 4.725758 GTTCAGAACGATGCACGC 57.274 55.556 0.00 0.00 46.94 5.34
3283 3964 1.602377 CCAGGGAAACACGTTCAGAAC 59.398 52.381 2.85 2.85 38.06 3.01
3284 3965 1.210967 ACCAGGGAAACACGTTCAGAA 59.789 47.619 0.00 0.00 38.06 3.02
3285 3966 0.834612 ACCAGGGAAACACGTTCAGA 59.165 50.000 0.00 0.00 38.06 3.27
3286 3967 1.226746 GACCAGGGAAACACGTTCAG 58.773 55.000 0.00 0.00 38.06 3.02
3287 3968 0.542333 TGACCAGGGAAACACGTTCA 59.458 50.000 0.00 0.00 38.06 3.18
3288 3969 1.226746 CTGACCAGGGAAACACGTTC 58.773 55.000 0.00 0.00 35.28 3.95
3289 3970 0.179029 CCTGACCAGGGAAACACGTT 60.179 55.000 8.17 0.00 44.87 3.99
3290 3971 1.450211 CCTGACCAGGGAAACACGT 59.550 57.895 8.17 0.00 44.87 4.49
3291 3972 4.379174 CCTGACCAGGGAAACACG 57.621 61.111 8.17 0.00 44.87 4.49
3298 3979 5.958690 CCAGAAAGGAAACCTGACCAGGG 62.959 56.522 19.22 3.02 46.89 4.45
3300 3981 2.158608 ACCAGAAAGGAAACCTGACCAG 60.159 50.000 0.00 0.00 41.22 4.00
3301 3982 1.850345 ACCAGAAAGGAAACCTGACCA 59.150 47.619 0.00 0.00 41.22 4.02
3302 3983 2.658807 ACCAGAAAGGAAACCTGACC 57.341 50.000 0.00 0.00 41.22 4.02
3303 3984 3.075148 GCTACCAGAAAGGAAACCTGAC 58.925 50.000 0.00 0.00 41.22 3.51
3304 3985 2.979678 AGCTACCAGAAAGGAAACCTGA 59.020 45.455 0.00 0.00 41.22 3.86
3305 3986 3.425162 AGCTACCAGAAAGGAAACCTG 57.575 47.619 0.00 0.00 41.22 4.00
3306 3987 3.138468 ACAAGCTACCAGAAAGGAAACCT 59.862 43.478 0.00 0.00 41.22 3.50
3307 3988 3.487372 ACAAGCTACCAGAAAGGAAACC 58.513 45.455 0.00 0.00 41.22 3.27
3308 3989 5.529800 TGTTACAAGCTACCAGAAAGGAAAC 59.470 40.000 0.00 0.00 41.22 2.78
3309 3990 5.686753 TGTTACAAGCTACCAGAAAGGAAA 58.313 37.500 0.00 0.00 41.22 3.13
3310 3991 5.071250 TCTGTTACAAGCTACCAGAAAGGAA 59.929 40.000 0.00 0.00 41.22 3.36
3311 3992 4.591498 TCTGTTACAAGCTACCAGAAAGGA 59.409 41.667 0.00 0.00 41.22 3.36
3312 3993 4.691216 GTCTGTTACAAGCTACCAGAAAGG 59.309 45.833 0.00 0.00 45.67 3.11
3313 3994 5.297547 TGTCTGTTACAAGCTACCAGAAAG 58.702 41.667 0.00 0.00 34.29 2.62
3314 3995 5.284861 TGTCTGTTACAAGCTACCAGAAA 57.715 39.130 0.00 0.00 34.29 2.52
3315 3996 4.948341 TGTCTGTTACAAGCTACCAGAA 57.052 40.909 0.00 0.00 34.29 3.02
3316 3997 5.221641 ACAATGTCTGTTACAAGCTACCAGA 60.222 40.000 0.00 0.00 42.70 3.86
3317 3998 4.997395 ACAATGTCTGTTACAAGCTACCAG 59.003 41.667 0.00 0.00 42.70 4.00
3318 3999 4.754618 CACAATGTCTGTTACAAGCTACCA 59.245 41.667 0.00 0.00 42.70 3.25
3319 4000 4.154195 CCACAATGTCTGTTACAAGCTACC 59.846 45.833 0.00 0.00 42.70 3.18
3320 4001 4.755123 ACCACAATGTCTGTTACAAGCTAC 59.245 41.667 0.00 0.00 42.70 3.58
3321 4002 4.968259 ACCACAATGTCTGTTACAAGCTA 58.032 39.130 0.00 0.00 42.70 3.32
3322 4003 3.820557 ACCACAATGTCTGTTACAAGCT 58.179 40.909 0.00 0.00 42.70 3.74
3323 4004 4.568152 AACCACAATGTCTGTTACAAGC 57.432 40.909 0.00 0.00 42.70 4.01
3324 4005 6.038161 TCAGAAACCACAATGTCTGTTACAAG 59.962 38.462 0.00 0.00 42.70 3.16
3325 4006 5.883115 TCAGAAACCACAATGTCTGTTACAA 59.117 36.000 0.00 0.00 42.70 2.41
3326 4007 5.432645 TCAGAAACCACAATGTCTGTTACA 58.567 37.500 0.00 0.00 43.86 2.41
3327 4008 6.560253 ATCAGAAACCACAATGTCTGTTAC 57.440 37.500 0.00 0.00 38.87 2.50
3329 4010 8.896744 CATATATCAGAAACCACAATGTCTGTT 58.103 33.333 0.00 0.00 38.87 3.16
3330 4011 8.267183 TCATATATCAGAAACCACAATGTCTGT 58.733 33.333 0.00 0.00 38.87 3.41
3331 4012 8.667076 TCATATATCAGAAACCACAATGTCTG 57.333 34.615 0.00 0.00 39.09 3.51
3332 4013 9.685276 TTTCATATATCAGAAACCACAATGTCT 57.315 29.630 0.00 0.00 0.00 3.41
3337 4018 8.620416 CCGATTTTCATATATCAGAAACCACAA 58.380 33.333 2.87 0.00 33.82 3.33
3338 4019 7.990314 TCCGATTTTCATATATCAGAAACCACA 59.010 33.333 2.87 0.00 33.82 4.17
3339 4020 8.378172 TCCGATTTTCATATATCAGAAACCAC 57.622 34.615 2.87 0.00 33.82 4.16
3340 4021 8.428852 TCTCCGATTTTCATATATCAGAAACCA 58.571 33.333 2.87 0.00 33.82 3.67
3341 4022 8.833231 TCTCCGATTTTCATATATCAGAAACC 57.167 34.615 2.87 0.00 33.82 3.27
3342 4023 8.930760 CCTCTCCGATTTTCATATATCAGAAAC 58.069 37.037 2.87 0.00 33.82 2.78
3343 4024 7.604164 GCCTCTCCGATTTTCATATATCAGAAA 59.396 37.037 0.00 0.00 32.34 2.52
3344 4025 7.099764 GCCTCTCCGATTTTCATATATCAGAA 58.900 38.462 0.00 0.00 0.00 3.02
3345 4026 6.351371 GGCCTCTCCGATTTTCATATATCAGA 60.351 42.308 0.00 0.00 0.00 3.27
3346 4027 5.814705 GGCCTCTCCGATTTTCATATATCAG 59.185 44.000 0.00 0.00 0.00 2.90
3347 4028 5.734720 GGCCTCTCCGATTTTCATATATCA 58.265 41.667 0.00 0.00 0.00 2.15
3365 4046 1.523758 TTGAAAAAGAGAGCGGCCTC 58.476 50.000 0.00 9.57 38.42 4.70
3366 4047 1.981256 TTTGAAAAAGAGAGCGGCCT 58.019 45.000 0.00 0.00 0.00 5.19
3367 4048 2.793278 TTTTGAAAAAGAGAGCGGCC 57.207 45.000 0.00 0.00 0.00 6.13
3386 4067 8.941977 GGATTGACCACTAAAGTTTTTGTTTTT 58.058 29.630 0.00 0.00 38.79 1.94
3387 4068 8.318412 AGGATTGACCACTAAAGTTTTTGTTTT 58.682 29.630 0.00 0.00 42.04 2.43
3388 4069 7.847096 AGGATTGACCACTAAAGTTTTTGTTT 58.153 30.769 0.00 0.00 42.04 2.83
3389 4070 7.418337 AGGATTGACCACTAAAGTTTTTGTT 57.582 32.000 0.00 0.00 42.04 2.83
3390 4071 8.528044 TTAGGATTGACCACTAAAGTTTTTGT 57.472 30.769 0.00 0.00 42.04 2.83
3394 4075 9.892130 CTCTATTAGGATTGACCACTAAAGTTT 57.108 33.333 0.00 0.00 42.04 2.66
3459 4140 5.250982 ACATATGGATGGCAGTACATGATG 58.749 41.667 7.80 11.23 37.39 3.07
3467 4148 4.142093 GCTGAAAAACATATGGATGGCAGT 60.142 41.667 7.80 0.00 37.39 4.40
3508 4192 7.545265 GCACCAGCAAATGTTTGAATCTAAATA 59.455 33.333 9.53 0.00 40.55 1.40
3530 4214 3.262420 CACTTATCTGTGTACCTGCACC 58.738 50.000 0.00 0.00 38.52 5.01
3607 4291 0.035820 CCCGAGAAAAATGGGTCCGA 60.036 55.000 0.00 0.00 38.18 4.55
3609 4293 1.280998 TCTCCCGAGAAAAATGGGTCC 59.719 52.381 0.00 0.00 43.75 4.46
3624 4308 4.468689 CCCCGTCCGCTTTCTCCC 62.469 72.222 0.00 0.00 0.00 4.30
3729 4413 1.798626 CCATCACCATCTCCTCCTCA 58.201 55.000 0.00 0.00 0.00 3.86
3751 4435 0.249615 CACACGATGGCGATCCTGAT 60.250 55.000 13.14 0.00 41.64 2.90
3852 4536 1.137513 CGGGTGTTCTGAAGTTCGAC 58.862 55.000 0.00 0.00 0.00 4.20
3853 4537 0.599204 GCGGGTGTTCTGAAGTTCGA 60.599 55.000 0.00 0.00 0.00 3.71
3895 4604 3.785499 CACTCGGCGTCGTCTCGA 61.785 66.667 10.18 1.53 37.69 4.04
3918 4627 0.937304 AATTCGGCGGTTGATGATCG 59.063 50.000 7.21 0.00 0.00 3.69
3948 4674 1.680207 GGCTTCCATCTGAATTCAGCC 59.320 52.381 27.45 20.66 43.46 4.85
3964 4699 0.394899 GGCCTCTACATTGCTGGCTT 60.395 55.000 0.00 0.00 42.84 4.35
4047 4782 7.459234 ACATCACCATCATCATCTTACATGAT 58.541 34.615 0.00 0.00 39.83 2.45
4273 5021 4.082523 CTGTGATGGGCCCGACGT 62.083 66.667 19.37 2.29 0.00 4.34
4330 5078 4.767928 GGTACGGATTAGGATGAGTCAGAT 59.232 45.833 0.00 0.00 0.00 2.90
4410 5160 5.767665 ACTGAACATGGCTACATTTTACACA 59.232 36.000 0.00 0.00 34.35 3.72
4412 5162 5.335583 GCACTGAACATGGCTACATTTTACA 60.336 40.000 0.00 0.00 34.35 2.41
4502 5262 1.570813 TACTGTGCGATATGCTGTGC 58.429 50.000 0.00 0.00 46.63 4.57
4510 5270 4.665833 AGCCTGTTATTACTGTGCGATA 57.334 40.909 0.00 0.00 0.00 2.92
4512 5272 4.178540 GTTAGCCTGTTATTACTGTGCGA 58.821 43.478 0.00 0.00 0.00 5.10
4582 5538 0.911045 TGATGGCTTGAGAGGGCAGA 60.911 55.000 0.00 0.00 42.26 4.26
4596 5560 1.340248 GATGGCCAGAAGCATTGATGG 59.660 52.381 13.05 0.00 46.50 3.51
4597 5561 2.028876 TGATGGCCAGAAGCATTGATG 58.971 47.619 13.05 0.00 46.50 3.07
4598 5562 2.307768 CTGATGGCCAGAAGCATTGAT 58.692 47.619 13.05 0.00 45.78 2.57
4599 5563 1.758936 CTGATGGCCAGAAGCATTGA 58.241 50.000 13.05 0.00 45.78 2.57
4669 5633 4.494690 CGCATAGCAATCTGTGGTTACTTG 60.495 45.833 0.00 0.00 39.22 3.16
4711 5675 2.037144 GCAGATCCTCCATTTTGCCAT 58.963 47.619 0.00 0.00 0.00 4.40
4713 5677 0.749049 GGCAGATCCTCCATTTTGCC 59.251 55.000 2.95 2.95 43.54 4.52
4714 5678 1.477553 TGGCAGATCCTCCATTTTGC 58.522 50.000 0.00 0.00 35.26 3.68
4778 5742 1.992667 GCAAACGCTGCCCTATTTTTC 59.007 47.619 0.00 0.00 46.13 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.