>input_sequence_27081
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-------------------------------------------------------------ATGGCGCCGGGAGCCGGGA
---CGGCGGCGGCGACCAAGAACCCTACCAAAACCCTCGCCGCCATCCTCCTCCTCGTCCTCCTGCTCGCCGACCTCCCG
CTCTGCGCCTCCCAGCCGCCGCTGCACTCCCAGCCCCTGCCCGCCACCCAGTCCCCGGCGGCGCCCCTCCCGCCGCCGCA
GCCGAGTGCCCCCCACGCGCGGGCCGGCGGCGCCGCGCGCCTCCGCCGCATCGCGCTCGGCGTGCTCCTCGGCTCGCTCG
CCGGCTTCCTCCTCTCCCTCGCCTTCCTCTACGCCATCCGCGTCGCCGTGCTACACGCCGGGAACGCGCCGGCCGTCGCC
CGGGGCCCCGTCTCCTTCACGCCGCAAATCTCGCCCAAGAGCCTCCAGGGCGCACTCCCCTCCGCGCGCCCGCTCGCGCG
CGGGCCCCGCGGGACGTACCACAAGCTCGACCTCGACGGCGACCTCACCGTCGCCGTCAAGGTGCTCGACCTCGCCGCCG
CCAGCCGCGCCGAGG------CCTCGCCCTCGCCCTCACGGCCGGCGAACGGCTCCAACTCCAAGTCCGACATGCGGAGG
GTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGTGCGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGA
CCGGCTCTCGCTCGTCTACGACTTCGTGCCGGGGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTCA
GCCTCAGCTGGGACACCAGGAACAGGATTGCGGCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCC
AGGATACTGCATTGCAACCTCAAGCCGTCCAATGTGATGCTGGAGGAAGGCTTCGAACCGGTGCTGGCGGATTGCGGCGT
TGCGAGGCTGATCGATTCCGGTTCGCCTGATCCGCAGTCGTCCGGCAGCCTCTACACCGCTCCAGAGTGCTACCAAAGTA
GCAGGTAAAAATCCATGCGTTGTCTTTTTTCAGTTTTCAGTGCTCAATTCAGCTAAATTTAGTAGTTTGCAGATTGCAGT
ATTACTA----TTTCTCAAATTGACAATTTGGTTTGCTTGTCTGTTCATTATAAATGAT-A-TGAGGGGAAATTAAACCT
AGGATATGCATCATTATCACTGCAAGGAAGGTAGCTCTAAAATAAAACTTATGCCGGATTGAGATGTTTGTTGTTAAATT
TTGTATTTTCTAA----AAACAGATATCATGTGTGTACATGTTCACATGCTGCATACT-CAATTTTA--TAGGTACTAAG
CAAACAACTCAATGTATTTCAGATTGCTAGAAATCTG-------CGATGTCTGCTATTGGCACTGAATAGCTTAAATTTT
AAGCTATAAATCATTATATTATTGGTAACACATACTTATACATCTGGCAACTAACATGTGTA------------------
--------------------------------------------------------------------------------
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----------------------------AATTGTGTAGTGATAATATCATGTCATTTTCTTATTTGAACCATAAGCA---
----TTGCAACATTATATAATAGTATATACTACCAAAACAAGTGTTTGACATTCCATTGCATTATTGCTTGCATCCATAG
TTTCATTTGATTTGTGTCCCCAGTTAACAGTGCGTAATAATTGGCTAGCAAACACTGTTGTCTGTTTCCTTTCATTAGAC
TCTTCTGAATTTGGTTTTCTAGTTATCTGACTGTGTTGACGATAAGTAGACTTCACTTCCGTGCCATTTGAATTTAATCA
GTGAAATGAGCAAGAGAGAAGACATAAAGCATATTAATAAAGAATACCACAGGGCTTAATCGAAGGTACCCAGCTTTCGC
TTTTTGTAACTGGAGAATCTTTACTTTGTTAGGGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTAAGCTTTC
CATATATTCCCGCATGAGCACATACAGCTGTTGGCCCACCCCCTGTTCTACT-AAAAATATCGATATATTTCGTTCTAGC
CTCTTGTATATAAATCAGAGAATAGATGCTTTGAGGATTGGTGTTCTATATTCTTATTCCAATCTCGTTCAGATAAGTAC
ATCATCAGTAAACTTATGGG----------------AATTTAACGTGCAGAAAAGGACTTTCAAGCAGGCTACTTTAACC
AGATCAGTAACTCATGATTTATTTATTTATTTTGTCATGGTTGATCATCAATTTTACAACTTTAGCTGTCTGTAATATAA
AACTTCAATTCCACTGCACTTGGTAGGTTGGGCGATAGTTCCGCTTAGGGGCTATGTTGCCTTTGGCGTTTTGGGCTGCT
GTGCGGCTTGTGCTCGGCTGCTTTAGATCTCAGGGCGTGCATCGTTCTGAACGTGTTTCCCTGGTCAGGTTTCCTTTCTG
GTAGCTTGTAACAGACATTGTGGTTTCTGATATATGAAAATCGGAGAGGCCGCTCTCTTTTTCAAAAAAAACAAAAACTT
TAGTGGTCAATCCTAATAGAGCTTGTGTTTTTCTTCTGTTAGATGGTTCAGAACTTCAACATCATGTACTGCCATCCATA
TGTTTTTCAGCTCTTA---GGTGTTTCTGAGTATTTAGATTCAAACATTTGCTGGTGCAGGTACACAGATAAGTGCGACG
TCTATGCTTTCGGCATGATCCTCGGCGTTCTGCTCACTGGGAAAGACCCCTCGGACCCATTTTTCTCGGGAGAAAGCGGA
CGGGGCAGCCTGGCTCGATGGCTCCGTCACATGCAGCATTCCGGCGACATGAAAGAAGCGCTGGACAGCAGCATTGTAGG
GGAGGAGGTCGATGAGGAGGAGATGGTGATGGCCATCAGGATCGCCATCGTGTGCCTCTCGGAGTTGCCAGCCGATCGGC
CATCCAGCGATGAACTCGTAGCCATGCTCGCCCAGCTCCACAGCTTCTAA------------------------------
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--------------------------------------------------------
>chr3B_1_TraesCS3B01G475600
GAGCAACAGTCCATTCAGCGGATAACCACGTCTCCCTGACAGAGAGGAGCGGCTAAGAAATTTCCACAGGAACGAGAGGT
TAATAAGCAGTCGGTCAAAATTCGGTTTACCATTACCGGCGCAGGATGAAATTTACCAGATATGGG-CGGAAAGGGGAAT
TGATCGCGGCAACA---GTGGCGCTACGTCGTGCGTGTGGGGGACTTTGAGGAGGGACAGGGGC-TAGAATAGGTTTTCG
GGGACAGGGTCTGGGCATGGCGCGCGGTTATCCACGCGCCCCTGCTCCGTCTCGGGCTCCCCC------TCCCCTCGTCT
CCCGTCCCTATGCTATCTGCTGCCGCTAGAGCCACCCCGAGGAATGAGACCGTGGTA-----------AACCCAACCGTG
GTGGGGT------------------GGGGAGGGAATCCAGGCGGACGGACGGACGGACGAGGGAGGAGAATGTCTGGTTC
CGGTCTTCATGCTCTGTCCCGTGGCTGCGTGCGTGCGTACGT---------------------GCTGCGAGATGCGCCGG
CAACCCAAAACCAAAAGGCCTCCCTCGCCCTTTTGATTCCCCCACGCCAATGCCTTTGCTGCCCCCCTGCTCTGCG----
-------CCGTGAGAGCCTGGGATTGTT--TCTCTTCTCGCCCCGCCGTTCCGTTTCGACTTAAAGCTCCTCCCGAG---
--GAAGCTCGCCCGCCTGCTCGTCTTGGTAGGAGGTGCGGGCCGCGTGACGGTGAG------------CTCTCGCACGCA
CGCCTGCTCTGCTGCTGCTGT------GGAGGAGGAGCAGGGCGACGTTTTCGCCGTTTCCGTCTTCTTCGTCGTCGTCG
TCAGGTATAATTTTGGCACCCTGCGAAGCTCCT--------CCCCTGCAAAATCTCCGGCCCCTCTTCA-----------
----TTGCTCGTTTCCGTTTCACTGTCCCCTTCCGACTGCAATAA-----ATCTCCCCCGTGTTG---------------
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---------------ATAAGCAAGAACCATGCAGAAAATGGCATCTTGATAAACCAATCTTTGATCCTATT---------
-----------------TCTTCTCTCCACTCCGCTGCCAAATCGGTTCTTTGGTCCATCCAATGGCGCCGGGAGCCGGGA
---CGGCGGCGGCGACCAAGAACCCTACCAAAACCCTCGCCGCCATCCTCCTCCTCGTCCTCCTGCTCGCCGACCTCCCG
CTCTGCGCCTCCCAGCCGCCGCTGCACTCCCAGCCCCTGCCCGCCACCCAGTCCCCGGCGGCGCCCCTCCCGCCGCCGCA
GCCGAGTGCCCCCCACGCGCGGGCCGGCGGCGCCGCGCGCCTCCGCCGCATCGCGCTCGGCGTGCTCCTCGGCTCGCTCG
CCGGCTTCCTCCTCTCCCTCGCCTTCCTCTACGCCATCCGCGTCGCCGTGCTACACGCCGGGAACGCGCCGGCCGTCGCC
CGGGGCCCCGTCTCCTTCACGCCGCAAATCTCGCCCAAGAGCCTCCAGGGCGCACTCCCCTCCGCGCGCCCGCTCGCGCG
CGGGCCCCGCGGGACGTACCACAAGCTCGACCTCGACGGCGACCTCACCGTCGCCGTCAAGGTGCTCGACCTCGCCGCCG
CCAGCCGCGCCGAGG------CCTCGCCCTCGCCCTCACGGCCGGCGAACGGCTCCAACTCCAAGTCCGACATGCGGAGG
GTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGTGCGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGA
CCGGCTCTCGCTCGTCTACGACTTCGTGCCGGGGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTCA
GCCTCAGCTGGGACACCAGGAACAGGATTGCGGCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCC
AGGATACTGCATTGCAACCTCAAGCCGTCCAATGTGATGCTGGAGGAAGGCTTCGAACCGGTGCTGGCGGATTGCGGCGT
TGCGAGGCTGATCGATTCCGGTTCGCCTGATCCGCAGTCGTCCGGCAGCCTCTACACCGCTCCAGAGTGCTACCAAAGTA
GCAGGTAAAAATCCATGCGTTGTCTTTTTTCAGTTTTCAGTGCTCAATTCAGCTAAATTTAGTAGTTTGCAGATTGCAGT
ATTACTA----TTTCTCAAATTGACAATTTGGTTTGCTTGTCTGTTCATTATAAATGAT-A-TGAGGGGAAATTAAACCT
AGGATATGCATCATTATCACTGCAAGGAAGGTAGCTCTAAAATAAAACTTATGCCGGATTGAGATGTTTGTTGTTAAATT
TTGTATTTTCTAA----AAACAGATATCATGTGTGTACATGTTCACATGCTGCATACT-CAATTTTA--TAGGTACTAAG
CAAACAACTCAATGTATTTCAGATTGCTAGAAATCTG-------CGATGTCTGCTATTGGCACTGAATAGCTTAAATTTT
AAGCTATAAATCATTATATTATTGGTAACACATACTTATACATCTGGCAACTAACATGTGTA------------------
--------------------------------------------------------------------------------
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----------------------------AATTGTGTAGTGATAATATCATGTCATTTTCTTATTTGAACCATAAGCA---
----TTGCAACATTATATAATAGTATATACTACCAAAACAAGTGTTTGACATTCCATTGCATTATTGCTTGCATCCATAG
TTTCATTTGATTTGTGTCCCCAGTTAACAGTGCGTAATAATTGGCTAGCAAACACTGTTGTCTGTTTCCTTTCATTAGAC
TCTTCTGAATTTGGTTTTCTAGTTATCTGACTGTGTTGACGATAAGTAGACTTCACTTCCGTGCCATTTGAATTTAATCA
GTGAAATGAGCAAGAGAGAAGACATAAAGCATATTAATAAAGAATACCACAGGGCTTAATCGAAGGTACCCAGCTTTCGC
TTTTTGTAACTGGAGAATCTTTACTTTGTTAGGGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTAAGCTTTC
CATATATTCCCGCATGAGCACATACAGCTGTTGGCCCACCCCCTGTTCTACT-AAAAATATCGATATATTTCGTTCTAGC
CTCTTGTATATAAATCAGAGAATAGATGCTTTGAGGATTGGTGTTCTATATTCTTATTCCAATCTCGTTCAGATAAGTAC
ATCATCAGTAAACTTATGGG----------------AATTTAACGTGCAGAAAAGGACTTTCAAGCAGGCTACTTTAACC
AGATCAGTAACTCATGATTTATTTATTTATTTTGTCATGGTTGATCATCAATTTTACAACTTTAGCTGTCTGTAATATAA
AACTTCAATTCCACTGCACTTGGTAGGTTGGGCGATAGTTCCGCTTAGGGGCTATGTTGCCTTTGGCGTTTTGGGCTGCT
GTGCGGCTTGTGCTCGGCTGCTTTAGATCTCAGGGCGTGCATCGTTCTGAACGTGTTTCCCTGGTCAGGTTTCCTTTCTG
GTAGCTTGTAACAGACATTGTGGTTTCTGATATATGAAAATCGGAGAGGCCGCTCTCTTTTTCAAAAAAAACAAAAACTT
TAGTGGTCAATCCTAATAGAGCTTGTGTTTTTCTTCTGTTAGATGGTTCAGAACTTCAACATCATGTACTGCCATCCATA
TGTTTTTCAGCTCTTA---GGTGTTTCTGAGTATTTAGATTCAAACATTTGCTGGTGCAGGTACACAGATAAGTGCGACG
TCTATGCTTTCGGCATGATCCTCGGCGTTCTGCTCACTGGGAAAGACCCCTCGGACCCATTTTTCTCGGGAGAAAGCGGA
CGGGGCAGCCTGGCTCGATGGCTCCGTCACATGCAGCATTCCGGCGACATGAAAGAAGCGCTGGACAGCAGCATTGTAGG
GGAGGAGGTCGATGAGGAGGAGATGGTGATGGCCATCAGGATCGCCATCGTGTGCCTCTCGGAGTTGCCAGCCGATCGGC
CATCCAGCGATGAACTCGTAGCCATGCTCGCCCAGCTCCACAGCTTCTAACCGCCGTC----------------------
---GAACTTCAGAACACCCGCATGATCTTCCATCTCGCAAGTCTCGAGACGACGCCGAGTGGCGCACGATCATCAA----
-------------CCGCCGAATTCAGTGTCCTGGGCTGAATT---------CAGATGGAAGCCAGCAATGTAGAGGCCAA
GCCAAACAAGTGTGGCAAAATAGCTGCCCATCAGCTTCATGGCACATGCTGGTGGTTGAGTA----TCATGTAAGATGAT
GATGGTGATGTTCTGGCCATGAATGAGCCTGGGGACAACAAATGTGCATATATGTAGTG------GTAGTATGTGTTCTG
TAGAATGGTGCATATCTT---GTTGGATCTCCCTTTGCTGTAGGGGGAGGGTGATGTTTTGGCCTGTGCATTGACCCATC
AGAGACATGGGCCCCTCTCTCAGCTTGCCCATGGCCTGGTGTCCGTCCGTTCGACAAGCGACGTCGGGCCCATCACAGGT
TTGGGCATCATTTCTCTTCATGTCACATGTCTCACCAATCTGACTCATCCTAATCCGTACCGTACCTGGCTGTTTGCCTC
TCAAGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT--GTGTGTAAAATGTAGCCATGTTCAGTGCATAATAT----GGT
CCTGGATGTGTAAAACGAGAACCGTCTGCTTG------GTGTGCGAAGTAACAGGCTAACAGCACAGCATATCGCACA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GTAATAACAGGCTAACAGCACAGCAC----------AACGTATTTATTCAGATACAT
TATAA-TGAGCACTTTTTCTGCCCTCTCA--------AGCCATCAATGCTTCTGGCCATCAGATCTACGAGTTTAAGAAT
TTTTGGCCGTTGGATCGATTTGCAAAAGCTCGCAAGTAACCACAGATTGCTATGCGAGCTGGGCCGCTGCTCCCATGGCA
AAATGGAGGATCTGCCATTATTTGGGCCTGCTGGGCTTTAGATGTCCAAGAGACCAACGGAG-AAAAATAGGGCAGCGTT
TGCAGCCGCACGTCCC-----CTCGCGGAAAAAGGTTGTTCTCTACCGTCGATCTC
>chr3A_51
--------------------------------------------------GGTTAAGAAATCTCCACGGGAGCGAGAGAT
TAATAAGCAGCCGGTCAAAATTCGGTTTACCATTACTGGCGCAGGAGGAAACTTACCGGATATGGG-CGGAGGAGGGGAT
TGATTGCGGCAACA---GTGGCGCTACGGCGTGCGTGTGGGGGACTTTGAGGAGGGACAGGGGTGTAGAGTAGGTTTTCG
GGGACAGGGTCTGGGCATGGCGCGCGAGTATCCACGCGCCCCTGCTCCGTCTCGGGCTCCCCCCCCTC--CCCCTCGTCT
CTCCCCCCCATGCTATCTGCTGCCGCTAGAGCCACACCG------------------TGGTAAACGTAAACCCAACCGTG
GTGGGGTGGGGTGAAA------ACGGGGGAGGGAATCCAGGCGGACGGACGGACGG----GGGAGGAGAATGTCTGGTTC
CGGTCTCCATGCCCTGTCCCGTGGCTGCGTGCGTGCCGTGCGTGCGTGCTGAGCCTGAGCTGAGCTGCGAGATGCGCCGG
CAACCCAGAAAGCCTCG------CCCGCCCTTTTGATTCCCCCACGCCAACGCCTTTGCTGCCCCCTGCTCCGCTCCCCT
CCGCTCACCGTGGGAGCCTGGGACTGTTTCTCTCTTCTCGCCCCGCCGTTCCGTTTCGACTTAAAGCTCCTCTCGGGAGG
GAGAAGCT----CGCCCGCTCGTCTTGGTAGGAGGCGCGGGCCGCGTGACGTGACGGTGAGCGGCTCTCTCTCTCTCGCA
CGCCTGCTCTGCCCCTGCGGAGGAGGAGGAGGAGGAGCAAGGCGACGTTTTCGCCGTTTCTGCCTTCTTCCTCGTCGTCG
TCAGGTATAATTTTGGCACCGTGCAGAGCTCCTCGCGCCCTCTCCTGCGAAATCGGCGAGCCCTATTCATTGCGCTGAGT
GAGCTTGCTCGTTTCCGTTTCGCTGTCCTCTTTCGGCTGCAATCAATCTCATCTCCCCCTTGTTG---------------
--------------------------------------------------------------------------------
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---------------ATAAGCAGGAAGCATGCGGAAAATGGCATCTTGGTACACCACTCTTTGATTCTATTCCTCGAGCA
TTATCCCTAGAGCGAATTTTTCTCTCCTCCCCGCTGCCAAATCGGTTCTTTGC----TCCAATGGCTACGGGAGCCGGGA
CGGCGGCGGCGGCGGCCAAGAACCCTACAAAAACCCTCGCCACTCTCCTCCTCCTCGTCCTCTTGCTCGCCGACCTCCCG
CTCTGCGCCTCCCAGCCGCCGCTGCACTCCCAGCCCCTGCCCGCCACGCAGTCCCCGGCCGCGCCCCTCCCGCCGCCGCA
GCCCAGGGGCCCCCGCGCGCAGGCCGGCGGCGCGGCCCGCCTCCGCCGCATCGCGCTCGGCGTGCTCCTCGGCTCGCTCG
CCGGCTTCATCCTCTCGCTCGCCTTCCTCTACGCCATCCGCGTCGCCGTGCTCCACGCCGGGAACGCGCCGGCCGTCGCC
AGGGGGCCCGTCTCCTTCACCCCGCAAATCTCGCCCAAGAGCCTCCAGTGCGCGCTCCCCTCCGCGCGCCCGCTTGCACG
CGGGCCCCGCGGGACGTACCACAAGCTCGACCTCGACGGCGACCTCACCGTCGCCGTCAAGGTGCTCGACCTCGCCGCCG
CCGCCGGCGCCTCACCCTCACCCTCGCCGTCGCCCTCGCGGCCGGCGAGCGGCTCCAAGTC------CGACATGCGGAGG
GTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGTGAGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGA
CCGGCTCTCGCTCGTCTACGACTTCGTCCCGGGGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTCA
GCCTCAGCTGGGACACCAGGAACAGGATTGCGGCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCC
AGGATACTGCATTGCAACCTCAAGCCGTCGAATGTGATGCTGGAAGAAGGGTTTGAACCGGTGCTGGCGGATTGCGGCGT
TGCGAGGCTGCTCGATTCGGGTTCGCCTGATCCGGAGTCGTCCGGCAGCCTCTACGCAGCTCCAGAGTGCTACCAAAGTA
GCAGGTAAAATTCGATGTGTTATCTTTTTTCAGAGTTCAGTGTTCAATTCAGCTAAATCTAGTACCTTGCATATTGCAGT
ATAACTACTACTTTCTCAAATTGACAATGTGGTTTGTTTGTCTGTTCATTATAAATTATAA-TGAGGGAAAATTAAACCT
AGGATGTGCATCGTTATCACTGCGAGGAAGGTAGCTCTAAATATATCTTTCGTAAAATCAAGAATTTTTGCTGTTAGATT
TTGTATTTTTTTATTAGAAGCAGATATCATGTGTGTGCATGTTCAAATGTTGCATACCACAATTTTG--TAGATATGAAG
CAAACAAGAG---GTATTTCAGATTGCTAGAAATCTG-------TGATGTGTGATAGCAACAGC----------------
----------TCATTAAAATTTTGTTAACCCATACTTATTCATCTGGCATGGGAGGAGTCCGTTAAGAGAGACCTGAAGG
ATTGGGGTATCACCGAAGAGCTAGCTATGGACAGGGGTGCATGGAAGCTTGCTATCCATGTGCCAGAGCCATGAGTTGGT
TGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAACTTGCTTGGGACTAAAGGCTTTGTTGTTGTTGTTGTTGTTTA
TACTTATTCATCTGGCAACTAAATGTGTAATTCTGTGGTGATAATATCAGACCATTTTTTTTTCATTTGAACTAGCACAA
GCATTTGCAACATTATG--------TACACTACCAAAACAAGTATTTGACATTCCATTTCATTATTGCTTGCATCCATAG
TTTCTTTCGATTTGCGTCCCCAGTTAACAGTGCGTAATCATTGGCTAGCAAACAGTGTTGTCTGTTTCCTTTCATTAGAC
TCTTCTGAATTTGGTTTTCTAGTCATTTGACTGTGTTGACGATAAGTAGACTTCACTTCTGCGCCATTTAAATTTAATCA
GTGAAATGAGTAAGAGAGAAAACATAAAGCATATTAATAAAGAATACCAGAGGGCTTAATCGAAGGTACCCAGCTTTTGC
TTTTTGTAACTGGAGAATCTTTACTTTGTTAGGGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTACGCTTTC
CATATATTCCCGCATGAGCACATACAGCTGTTGGCCCACACCCTGTTCTACTAAAAAATATCGATATATTTCATTCTAGC
CTCTTGTATATCAATCAGAGAATAGATGCTTTCAGGATTGGTGTTCTATATTCTTATTCCAATATCCTTCAGATAAGTAC
ATCATCGGTAAACTTATGGGAAGTTAACATGCAGATAA----------------GGACTTTTAACCAGACTACTTTAACC
AGATCAGTAACTCATG----ATTTGTTTATTTTGTCATGGTTGATCATCAATTTTGC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AACTT
TAGTGGTCAATCCTAATAGAGCTTGTGTTTTTCTTCTGTTAGATGGTTCAGAACTTCAATATCATGTGCTGCCATCCATA
TGTTTTTCAGCTCTTATTAGGTGTTTCTGAGCATTTAGATTCAAACATATGCTTGTGCAGGTACACGGATAAGTGCGACG
TCTATGCCTTCGGCATGATCCTTGGCGTTCTGCTCACCGGGAAAGACCCCGCAGACCCGTTTTTCTCAGGAGAAAGTGGA
CGGGGCAGCCTGGCTCGATGGCTCCGTCACATGCAGCATTCCGGCGACACGAAAGAAGCGCTGGACAGCAGCATCGTAGG
GGAGGAGGTCGACGAGGAGGAGATGGTGATGGCCGTCAGGGTCGCCATCGTGTGCCTCTCGGAGCTGCCCGCCGATCGGC
CATCCAGCGATGAACTCGTCGCGATGCTTGCCCAGCTCCACAGCTTCTAGCCACCTCCATCATCGTTCTAGCAGAAAGTT
TCTTCAGAA---------------------CATCTTCCATCGCGCCAGACGACGCCGAATGGAGCTGGATCGGACCCCGG
CCGGCCATACAGTCCCACCATTTCAGCTTCTTGAGCTGAATTCAGTTTGTCCAGATGGGAACCAGCAATGTAGAGGCCGA
AC--AACAAGTGTGGCAAAAT-----------AGCTTCATGGCACATGCTGGTGGTTGAGG----TTCATGTAAGATGAT
GATGGTGATGTTCTGGCCATGAATGAGCCTGGGGACAACAAATGTGCATATATGTAGTGTAGACTGTAGTGTGTGTTCTC
CAGAATGGTGCATATCTT---GTTGGATCTCCCTTTGCTGTAGAGGGAGGGTGATGTTTTGGCCTGTGCATTGACCCATC
AGAGACATGGGCACCGCTCTCTGCTTGCCCATGGCCTGGTGTCCGTCCGTTCGACAAGCGTCGTCGGGCCCATCACAGGT
TTGGGCATCATTTCTCTTCATGTCACATGTCTCACCACTCCGACTCACCCTAATCCGTACCGTACCTGGCTGTTTGCCTC
TCAAGTAC-------------------TGTGTGTGT--GAGAGTAAAATGTAGCCATGTTCAGGGCATAGTAT----GGT
CTTGGATGTGTAAAACGAGACCCGTCTGCTTG------GTGTTTGAAGTAACAGCCTAACAACACAACACACAGTAATAA
AAGAGTAATGCTAGAGCTACAGACTTGTTTTACAGGGTTTATTGCACAGGCTGATGTGGAGCAAACTGATTGGTTTAGGA
TTAGCAGCCGGGCCCCCACCCCCTGAAATCAGGAGGGGCGAGCGAATTAGCAAGAGGGGGTCCGTAACACACTCGTAAAA
CCCCCGTACGTTTAGGATTACTCGTAATAAAATGCTAACAGCACAGCAC----------A-----TTTATTTAGATACAT
TATAACTGAGTACCTT---------------------------------TTCTGGCCATTAGATCAACGAGTTTAAGAAT
TTTTGACCGTTGGATCGATTTGCAAAAGCTCGTAAGTAACCACAGATCGCCATACGGAATGGGCCGCTGCTCCTGTAACA
AAATGGACGACCTGCCATTATTTGGGCCTGCTGGGCTTTAGATGTCCAAGGCACCAACTG--AAAAAATAGGGCAGTGTT
CGCAGCCGCACGTCCCTCAATCTCGCGGAAAAAGGTTGTTCTCTACTGTCGATCTC
>chr3D_122
--------------------------------------------------------------------------------
-----------------------------------------CAGGAGGAAATTTACCAGATATGGGGCGGAAAAGGGAAT
TGATTGCGGCAACAACAGTGGCGCTAGGGTGTGCGTGTGGGGGACTTTGAGGAGGGACAGGGGTGTAGAATAGGTTTTCG
GGGACAGGTTCTGGGCATGGCGCGCGGGTATCCACGCGCCCCTGCTCCGTCTCGGGTTCCCCCTTCCCCTCGCCTCGTCT
CTCGCCCCTATGCTATGTGCTGCCGCTAGAGCCACCCCGAGGAACGAGACCGTGGTATGGTAAACGTAAACCCAACCGGG
GTGGTGTGGGGGGTGAAAACGGACGGGGGAGGGAATCCAGGCGGACGGACGGACGG----GGGAGGAGAATGTCTGGTTC
CGGTCTTCATGCTCTGTCCCGTGGCTGCGTGCGTACGT--------------------GCTGAGCTGCGAGATGCGCCGG
CAACCCAAAAAGCCTCG------CTCGCCCTTTTGATTCCCCCACGCCAATGCCTTTGCTGCTCCCTGCTCTGCTCCCCT
CCGCTCACCGTGAGAGCCTGGGATAGCT--TCTCTTCTCGCCCCGCCGTTCCGTTTCGACTTAAAGCTCCTCCCGTG---
--GAAGCT----CGCCCGCTCGTCTTGGTAGGAGGCGCGGGCCGCGTGACGGTGAG------------CTATCGCACGCA
CGCCTGCTCTGCTCCGCTGCTGCTGC-GGAGGAGGAGCAGGGCGACGTTTTCGCCGTTTCCGTCTTCT---------TCC
TCAGGTATAATTTTGGCACCCTGCAGAGCTCCT-----------------------------------------------
-------------TCCGTTTCTCTGTCCTCTTTCGGCTGTAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAGCATAAGCAAGAACCATGCAGAAAATGGCATCTTGATAGACCACTCTTTGATCCTATTACTCGAGCA
TTTCCCGTTGAGCGATTTCTTCTCTCCTCCCCGCTGCCAAATCGGTTCTTTGG----TCCAATGGCGCCGGGAGCCGGGA
---CGGCGGCGGCGGCCAAGAACCCTACCAAAACCCTCGCCGCCACCCTCCTCCTCGTCCTCCTGCTCGCCGACCTCCCG
CTCTGCGCCTCCCAGCCGCCGCTGCACTCCCAGCCCCTGCCCGCCACGCAGTCCCCGGCCGCGCCCCTGCCGCCGCCGCA
GCCCAGGGCCCCCCACGCGCGGGCCGGCGGCGCCGCCCGCCTCCGCCGCATCGCGCTCGGGGTCCTCCTCGGCTCGCTCG
CCGGCTTCCTCCTCTCCCTCGCCTTCCTCTACGCCATCCGCGTCGCCGTGCTCCATGCCGGGAACGCGCCGGCCGTCGCC
CGGGGCCCCGTCTCCTTCACGCCGCAAATCTCGCCCAAGAGCCTCCAGTGCGCGCTCCCCTCCGCGCGCCCGCTCGCGCG
CGGGCCCCGCGGGACGTACCACAAGCTCGACCTCGACGGCGACGTCACCGTCGCCGTCAAGGTGCTCGACCTTGCCGCCG
CCAGCCGCGCCTCGCCCTCGCCCTCGCCCTCGCCCTCGCGGCCGGCGAGCGGCTCCAAGTC------CGACATGCGGAGG
GTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGTGCGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGA
CCGGCTCTCGCTCGTCTACGACTTCGTCCCGGGGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTGA
GCCTCAGCTGGGACACCAGGAACAGGATTGCGGCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCC
AGGATACTGCATTGCAACCTCAAGCCGTCGAATGTGATGCTGGAGGAAGGCTTCGAACCGGTGCTGGCGGATTGCGGGGT
TGCGAGGCTGCTCGATTCGGGTTCGCCTGATCCGGAGTCGTCCGGTAGCCTCTACACTGCTCCAGAGTGCTACCAAAGTA
GCAGGTAAATC---------TATGTGTTGTCTGTTTTCAGTGCTCAATTCAGCTAAATTTAGTAGCTTGAAGATTGCAGT
ATTACTA----TTTCTCAAATTGACAATTTGGTTTGCTTGTCTGTTCATTATAAATTAT-AATGAGGGGAAATTGAACCC
AGGCTATGCATCATTATCACTGCCAGGAAAGTAGATCTATAT--------------------------------------
---------------------------------------------------GCATACT-CAATTTTATATAGATACGAAG
CAAACAACTCAATGTATTTCAGATTGCTAGAAATCTGAGATGTGCGATGTCTGCTATTGGCACTGAATAGCTTAAATTTT
AAGCTATAAATCATTATACTATTGGTAACCCATACTTATACATCTGGCAACTAACATGTGTA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AATTGTGTAGTGATAATATCATGTCATTTTCTTATTTGAACCATAAGCA---
----TTGCAACATTATA----------TACTACCAAAACAAGCGTTTGACATTCCATTTCATTATTGCTTGCGTCCATAG
GTTCTTTCGATTTGTGTCCCCGGTTAACAGTGCCTAATCATTAGCTAGCAAGCACTGTTGTGTGTTTCCTTTCATTAGAC
TCTTCTGAATTTGGTTTTCTAGTTAT-TGACTGTGTTGACGATAAGTAGACTTCAGTTCCGCGCCATTTGAATTTAATCA
GTGAAATGAGTAAGAGAGAAGACATAAAGCATATTAATAAAGAATACCAGAGGGCTTAATCGAAGGTACCCAGCTTTTGC
TTTTTGTAACTGGAGAATCTTTACTTTGTTAGGGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTACGCTTTC
CATATATTCCCGCATGAGCACACACAGCTGTTGGCCCACCCCCTGTTCTACTAAAAA-TATTGATATATTTCATTCTAGC
CTCTTGTATATCAATCAGAGAATAGATGCTTTCAGGATTGGTGTTCTATATTCTTATTCCAATCTTCTTCAGATAAGTAC
ATCATCAGTTAACTTATGGG----------------AA----------------GGACTTTCAACCAGACTACTTTAACC
AGATCAGTAACTCATG----ATTTATTTATTTTGTCATGGTTGATCATCAATTTTACAAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TAGAGGTCAATCCTAATAGAGCTTGTGTTTTTCTTCTGTTAGATGGTTCAGAACTTCA---------GCTGCCATCCATA
TGTTTTTCAGCTCTTA---GGTGTTTCTGAGCATTTAGATTCAAACATTTGCTTGTGCAGGTACACAGATAAGTGCGACG
TCTATGCTTTCGGCATGATCCTCGGCGTTCTGCTCACCGGGAAAGACCCCGCAGACCTGTTTTTCTCAGGAGAAAGTGGA
CGGGGCAGCCTGGCACGATGGCTCCGTCACATGCAGCATTCCGGCGACATGAAAGAAGCGCTGGACAGCAGCATTGTAGG
GGAGGAGGTCGACGAGGAGGAGATGGTGATGGCCGTCAGGGTCGCCATCGTGTGCCTCTCGGAGCTGCCAGCCGATCGGC
CATCCAGCGACGAACTCGTAGCCATGCTCGCCCAGCTCCACAGCTTCTAACTGC------CATCGTCGTTGCTGGAAATT
TCTGAACTTCAGAACACCCGTATGATATTCCATCTCGCGAGTCGCGAGACGACGCAGAGTGGCGCAGGATCATCAA----
-------------CCGCCGAATTCAGTGTCCTGAGCTGAATT---------CAGATGGGAGCCAGCAATGTAGAGGCCAA
GCCAAGCAAGTGTGGCAAAATAGCTGCCCATCAGCTTCATGGCGCATGCTGGTGGTTGAATGAGCTTCATGTAAGATGAT
GATGGTGATGTTCTGGCCATGGATGAGCCTGGGGACAACAAATGTGCATATATGTAGT---------AGTATGTGTTCTG
TAGAATGGTGCATATCTTCTTGTTGGATCTCCCTTTGCTGTAGGGGGAGGGTGATGTTTTGTCCTGTGCATTGACCCATC
AGAGACATGGGCCCCTCTCTCAGCTTGCCCATGGCCTGGTGTCCGTCCGTTCGACAAGCGCGGTCGGGCCCATCACGGGT
TTGGGCATCATTTCTCTTCATGTCACATGTCTCACCACTCCGACTCGTCCTAATCCGTACCGTACCTGGCTGTTTGCCTC
TCAAGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGTAAAATGTAGCTATGTTCAGTGAGTAAAATGTAGGGT
CCTGGATGTGTAAAACGAGAACCGTCTGCTTG------GTGTGCGAAGTAACAGGCCAACAACACAGCACA--ACACA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GTAATAACAGGCTAACAGCACAGCAC----------AGCACC----TTTAGATACAT
TATAACTGAGCACTTTTCCTGCCCTCTCA--------AG--------GCTTCTGGCCATCAGATCTACGAGTTTAAGAAT
TTTTGGCCGTTGGATTGATTTGCAAAAGCTCGTAAGTTC---------GCTATACGGGCTGGGCCGCTGCTTCCGTAACA
AAATGGACGATCTGCCATTATTTGGGCCTGCTGGGCTTTGAATGTCCAAGAGACCAACGGAAAAAAAATAGGGCAGTGTT
CGCAGCCGCAAGTCCCTCAATCTCGCGGAAAAAGGTTGTTCTCTACCGTCGATCTC
>chr3A_4253
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---------------------------------------TGTCCGTCCGTTCGACAAGTGTACTCGGGCCCATCATAGGT
TTTGACATCATTTCTCTTCATGTCACATGTCTCACCACTCTGACTCATCCTAATCCGTACCGTACCTGGTTGTTTGCCTC
TCAAGTATGTGTGTGTGTGT----------------------GTAAAATGTAGCCATGTTCAGTTCATGGTAT----GCT
CCTGGATGTGTAAAACGAGAACCGTCTGCTTGTGCTTGGTGTGCGAAGTAGCAGGCTAACAACACAACACCGCACACA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GTAATAATAGGCTAAGAGCATAACATGGCACATTTAA-----TTTATTTAGATAAAT
TATAACTGAGCACTTTTCCTGCCCTCTCAACCCGTCAAG--------GCTTCTGGCCATCAGATCTACAAGTTTAAGAAT
TTTTGGCTGTTAGATCGATTTGCGAAAGCTCATAAGTAACCACATATCACTATACGGGATGGGCCGCTGCTCCTGTAACA
AAATGGACGACCTGCCATTGTTTGGGCCTACTGGGCTTTAGATGTCCAAGACACCAACTG--AAAAAATAGGAAAGTGTA
AGCAGCCGCACGTCCCTCAAACTCGCGGAAAAAGGTTCTTCTCTACCGTCGATCTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------S-----S---S------S-
----------S-------------------------S---------S--------------------------S------
----S-----------------------S----------------------------------S----------------
---------------------------S----------------------------------------------------
-S--S---------------------------------------S-----------------------------------
--------------------------------------------------------SSSS--------------------
--------------------------------------SSSS--------------------------------------
----------SSSSSS-SSSSSS-------------------------------------------SSSSS-SSSS----
---------------------------------------------------------------------------S----
--------SSSS----S------------------S--------------------------------------------
-------------S----S---------------------------------------------------S---------
------------------------SS----------------S-----S-----SS--SS----S---------------
---------------------S------S---S--S-------S---------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----S-----------------------
---------------------------S-S-----------------------SSSS-----------------------
--------------S-----------------------------------------------------------------
-----------------------------------------------S-----------S--------------------
---S--S-----------------------------S-------------------------------------------
----------------------------------------------------S---------------------------
------------------------------------------------S----S--------------------------
--------------------------------------------------------------------------------
-----------SS-S----------------------S----------S---------S--SSSSSS-------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
----------S-------S---------------S----------------------S----------------------
----------S--S---S---S-------------------------------------------S--------------
--------------------------------------------------------S-----------------------
-----------------------S-----------------SSS-SSS--SSSSSSSSSSSSS--S----S-----S---
---------S-S-------S----------------S--------S---S----------------------S---S---
--------------------------------------------------------------------------------
------------------S----------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------SSSSSSSS---------------------------------S---------------------
----S--S------------------------------S-----------------------------------------
--------------------------S----------------------------------S------------------
----------S--------------------------------------S---------------------------S--
-------------------------------------------------------------------------S------
------------------------------------------------------------------------S-------
-----------S--------------------S---------------------------------S-------------
--------------------------------------SSSSSSSSSSSSSSSS----------S---S-----------
----------------SSSS----------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-----------------------------------------------------------S-------S------------
-------------------------------S---------------------S--------------------------
-------------------------------------S------------S-S-----S--------S--------S---
--------------------------------------------------------------------------------
------------S---------------------S-----S-----------------------S---------------
-------------------------------------------------------SS-----------------------
--------------------S-----S----------------S----------------------S-------------
---------------------------------S------------------------S---------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------S------------------------------------------
---------------------------------------S-S--------------------------------------
-------------------------------------------------------------S-------S-S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-SSS------S--------
-----------------S---------------------SSSSSSSS---------------------------------
--------------------------------S--------------S-----S--S-----------------S-SS--
-------S-----------------------------------------------------S--------------S---
S-------------------------------------------------------
>forward_50
------------------------------TCTCCCTGACAGAGAGGAGC------------------------------
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>reverse_2378
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---------------------------------------------------------CGCTCCAGAGTGCTACCAAA---
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--------------------------------------------------------
>forward_935
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-----------------------------------GCTCCTCCCCTGCAAAATCT-------------------------
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>reverse_2612
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---------------------------------------------------TGCCGGATTGAGATGTTTGT---------
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--------------------------------------------------------
>forward_1986
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----------------------------------------------GAACGGCTCCAACTCCAAGT--------------
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>reverse_3928
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-------TTGTGCTCGGCTGCTTTAGA-----------------------------------------------------
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>forward_3876
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----------------CACTTGGTAGGTTGGGCGAT--------------------------------------------
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>reverse_5677
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----------------------------------------------------------------------------GGCA
AAATGGAGGATCTGCC----------------------------------------------------------------
--------------------------------------------------------
