Multiple sequence alignment - TraesCS3B01G471300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G471300 chr3B 100.000 2477 0 0 1 2477 719829161 719826685 0.000000e+00 4575.0
1 TraesCS3B01G471300 chr3B 87.847 1226 54 41 294 1492 719880588 719879431 0.000000e+00 1351.0
2 TraesCS3B01G471300 chr3B 87.594 532 32 13 1170 1699 719879415 719878916 9.870000e-164 586.0
3 TraesCS3B01G471300 chr3B 89.130 414 18 3 1061 1474 790491938 790491552 7.960000e-135 490.0
4 TraesCS3B01G471300 chr3A 88.393 1904 116 60 288 2144 680971554 680969709 0.000000e+00 2194.0
5 TraesCS3B01G471300 chr3A 90.216 1063 51 27 553 1608 681050928 681049912 0.000000e+00 1338.0
6 TraesCS3B01G471300 chr3A 90.247 892 49 12 884 1752 680765119 680764243 0.000000e+00 1131.0
7 TraesCS3B01G471300 chr3A 92.530 589 24 11 2 571 681051529 681050942 0.000000e+00 826.0
8 TraesCS3B01G471300 chr3A 91.065 291 23 2 2190 2477 680969711 680969421 8.310000e-105 390.0
9 TraesCS3B01G471300 chr3A 84.638 345 37 8 2111 2450 680760874 680760541 1.840000e-86 329.0
10 TraesCS3B01G471300 chr3A 85.393 267 32 7 104 366 680767018 680766755 1.130000e-68 270.0
11 TraesCS3B01G471300 chr3A 89.820 167 14 3 80 245 680971808 680971644 6.940000e-51 211.0
12 TraesCS3B01G471300 chr3A 89.441 161 16 1 69 229 681106356 681106197 4.180000e-48 202.0
13 TraesCS3B01G471300 chr3A 88.000 175 13 4 627 800 681068216 681068049 1.500000e-47 200.0
14 TraesCS3B01G471300 chr3A 86.550 171 15 4 627 796 681085388 681085225 5.440000e-42 182.0
15 TraesCS3B01G471300 chr3A 90.000 70 6 1 1639 1707 681049907 681049838 3.390000e-14 89.8
16 TraesCS3B01G471300 chr3A 93.617 47 1 2 420 466 681104008 681103964 4.420000e-08 69.4
17 TraesCS3B01G471300 chr3D 89.943 1402 71 34 319 1706 543935948 543934603 0.000000e+00 1744.0
18 TraesCS3B01G471300 chr3D 87.315 1080 66 33 618 1695 543970775 543969765 0.000000e+00 1170.0
19 TraesCS3B01G471300 chr3D 86.614 508 46 13 103 590 543971554 543971049 2.170000e-150 542.0
20 TraesCS3B01G471300 chr3D 88.971 272 27 3 2178 2448 543933496 543933227 1.420000e-87 333.0
21 TraesCS3B01G471300 chr7B 87.773 458 25 4 1061 1517 646488068 646488495 7.900000e-140 507.0
22 TraesCS3B01G471300 chr7A 77.295 207 39 7 1857 2058 232748330 232748533 5.600000e-22 115.0
23 TraesCS3B01G471300 chr5D 76.087 184 29 14 1867 2038 268280920 268281100 5.680000e-12 82.4
24 TraesCS3B01G471300 chr5A 86.301 73 7 3 1867 1937 355465404 355465475 2.640000e-10 76.8
25 TraesCS3B01G471300 chr5B 73.864 176 40 6 1886 2058 617257464 617257636 5.720000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G471300 chr3B 719826685 719829161 2476 True 4575.000000 4575 100.000000 1 2477 1 chr3B.!!$R1 2476
1 TraesCS3B01G471300 chr3B 719878916 719880588 1672 True 968.500000 1351 87.720500 294 1699 2 chr3B.!!$R3 1405
2 TraesCS3B01G471300 chr3A 680969421 680971808 2387 True 931.666667 2194 89.759333 80 2477 3 chr3A.!!$R4 2397
3 TraesCS3B01G471300 chr3A 681049838 681051529 1691 True 751.266667 1338 90.915333 2 1707 3 chr3A.!!$R5 1705
4 TraesCS3B01G471300 chr3A 680760541 680767018 6477 True 576.666667 1131 86.759333 104 2450 3 chr3A.!!$R3 2346
5 TraesCS3B01G471300 chr3D 543933227 543935948 2721 True 1038.500000 1744 89.457000 319 2448 2 chr3D.!!$R1 2129
6 TraesCS3B01G471300 chr3D 543969765 543971554 1789 True 856.000000 1170 86.964500 103 1695 2 chr3D.!!$R2 1592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 1624 0.457853 TCCTTTTCTCCGTCGATGCG 60.458 55.0 0.0 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 6918 0.250295 TTAGCAAGCGTGGCAACTCT 60.25 50.0 0.79 0.0 37.61 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.657729 GCTTTGTAGTACTTCTTATGAACCTTC 58.342 37.037 0.00 0.00 0.00 3.46
145 153 4.632153 ACAGGTTACAAGAGCACAACTAG 58.368 43.478 0.00 0.00 0.00 2.57
281 296 4.688021 GATCTTTACGCACAAGAGATCCT 58.312 43.478 0.00 0.00 37.72 3.24
314 374 2.749076 TGTGTAGCATAGCAAAAGCCTG 59.251 45.455 0.00 0.00 0.00 4.85
515 1624 0.457853 TCCTTTTCTCCGTCGATGCG 60.458 55.000 0.00 0.00 0.00 4.73
517 1626 2.025359 CTTTTCTCCGTCGATGCGCC 62.025 60.000 4.18 0.00 0.00 6.53
518 1627 2.773397 TTTTCTCCGTCGATGCGCCA 62.773 55.000 4.18 0.00 0.00 5.69
520 1629 4.498520 CTCCGTCGATGCGCCAGT 62.499 66.667 4.18 0.00 0.00 4.00
523 1632 2.102357 CGTCGATGCGCCAGTAGT 59.898 61.111 4.18 0.00 0.00 2.73
524 1633 1.354155 CGTCGATGCGCCAGTAGTA 59.646 57.895 4.18 0.00 0.00 1.82
1125 2712 0.319297 GGTGCTTCTCGGTGTACGTT 60.319 55.000 0.00 0.00 44.69 3.99
1558 3455 0.596083 GCGCATACACAGATCGAGCT 60.596 55.000 0.30 0.00 0.00 4.09
1559 3456 1.126890 CGCATACACAGATCGAGCTG 58.873 55.000 28.08 28.08 41.63 4.24
1560 3457 0.857935 GCATACACAGATCGAGCTGC 59.142 55.000 29.45 12.51 39.51 5.25
1584 3481 6.980397 GCAGGTGCTTAATTTGCATATACTTT 59.020 34.615 8.66 0.00 42.69 2.66
1637 3559 9.899226 AGCTGATTTAGATTGTAAAAGTGAAAC 57.101 29.630 0.00 0.00 0.00 2.78
1700 3623 6.148150 GTGTTGGATGTTCTTTGTATTACCGA 59.852 38.462 0.00 0.00 0.00 4.69
1708 3631 8.554835 TGTTCTTTGTATTACCGATTTCATGA 57.445 30.769 0.00 0.00 0.00 3.07
1747 3670 6.881602 AGGTTGAGCTCCTAAATTAGAAACAG 59.118 38.462 12.15 0.00 33.04 3.16
1770 6744 2.270352 ATGTAAGTGTGTGTGTGGGG 57.730 50.000 0.00 0.00 0.00 4.96
1817 6791 6.048509 ACTTTGGGTGATCATTTTGTTTGAC 58.951 36.000 0.00 0.00 0.00 3.18
1848 6826 4.780021 AGTGGAACATGTCTCTATGGAGTT 59.220 41.667 5.93 0.00 44.52 3.01
1854 6832 6.227298 ACATGTCTCTATGGAGTTTCGAAT 57.773 37.500 5.93 0.00 40.29 3.34
1855 6833 6.045318 ACATGTCTCTATGGAGTTTCGAATG 58.955 40.000 5.93 5.30 40.29 2.67
1921 6899 1.865788 GCAAGCACGGCAAATCCTGA 61.866 55.000 0.00 0.00 0.00 3.86
1922 6900 0.813184 CAAGCACGGCAAATCCTGAT 59.187 50.000 0.00 0.00 0.00 2.90
1924 6902 1.033746 AGCACGGCAAATCCTGATGG 61.034 55.000 0.00 0.00 0.00 3.51
1937 6915 3.754965 TCCTGATGGAAAACAGAACTGG 58.245 45.455 6.76 0.00 39.87 4.00
1938 6916 2.821969 CCTGATGGAAAACAGAACTGGG 59.178 50.000 6.76 0.00 36.38 4.45
1939 6917 3.490348 CTGATGGAAAACAGAACTGGGT 58.510 45.455 6.76 0.00 36.38 4.51
1940 6918 4.506625 CCTGATGGAAAACAGAACTGGGTA 60.507 45.833 6.76 0.00 36.38 3.69
1950 6929 1.348036 AGAACTGGGTAGAGTTGCCAC 59.652 52.381 0.00 0.00 36.27 5.01
1974 6953 4.451774 GCTTGCTAACAAAATTTGCCATCA 59.548 37.500 5.52 0.00 34.74 3.07
2001 6981 5.239087 GGCCAACACAATTGTCATCAAAATT 59.761 36.000 8.48 0.00 37.11 1.82
2019 6999 0.109365 TTGTTCGCAATTGCCATCCG 60.109 50.000 24.24 10.22 37.91 4.18
2022 7002 4.573950 CGCAATTGCCATCCGCCC 62.574 66.667 24.24 0.00 37.91 6.13
2023 7003 3.459965 GCAATTGCCATCCGCCCA 61.460 61.111 20.06 0.00 36.24 5.36
2025 7005 3.149648 AATTGCCATCCGCCCAGC 61.150 61.111 0.00 0.00 36.24 4.85
2070 7081 7.605309 CCGGTCCAAAATTAACTAGTTAACTCT 59.395 37.037 26.34 13.53 37.80 3.24
2071 7082 8.654215 CGGTCCAAAATTAACTAGTTAACTCTC 58.346 37.037 26.34 14.27 37.80 3.20
2072 7083 9.722184 GGTCCAAAATTAACTAGTTAACTCTCT 57.278 33.333 26.34 10.71 37.80 3.10
2080 7091 8.516811 TTAACTAGTTAACTCTCTCTTTTGCG 57.483 34.615 21.52 0.00 30.78 4.85
2081 7092 6.086785 ACTAGTTAACTCTCTCTTTTGCGT 57.913 37.500 12.39 0.00 0.00 5.24
2082 7093 5.921408 ACTAGTTAACTCTCTCTTTTGCGTG 59.079 40.000 12.39 0.00 0.00 5.34
2083 7094 4.058817 AGTTAACTCTCTCTTTTGCGTGG 58.941 43.478 1.12 0.00 0.00 4.94
2084 7095 2.622064 AACTCTCTCTTTTGCGTGGT 57.378 45.000 0.00 0.00 0.00 4.16
2085 7096 3.746045 AACTCTCTCTTTTGCGTGGTA 57.254 42.857 0.00 0.00 0.00 3.25
2086 7097 3.746045 ACTCTCTCTTTTGCGTGGTAA 57.254 42.857 0.00 0.00 0.00 2.85
2087 7098 4.273148 ACTCTCTCTTTTGCGTGGTAAT 57.727 40.909 0.00 0.00 0.00 1.89
2088 7099 4.246458 ACTCTCTCTTTTGCGTGGTAATC 58.754 43.478 0.00 0.00 0.00 1.75
2089 7100 4.245660 CTCTCTCTTTTGCGTGGTAATCA 58.754 43.478 0.00 0.00 0.00 2.57
2090 7101 4.637276 TCTCTCTTTTGCGTGGTAATCAA 58.363 39.130 0.00 0.00 0.00 2.57
2091 7102 4.451096 TCTCTCTTTTGCGTGGTAATCAAC 59.549 41.667 0.00 0.00 0.00 3.18
2092 7103 4.385825 TCTCTTTTGCGTGGTAATCAACT 58.614 39.130 0.00 0.00 0.00 3.16
2093 7104 5.543714 TCTCTTTTGCGTGGTAATCAACTA 58.456 37.500 0.00 0.00 0.00 2.24
2094 7105 5.637810 TCTCTTTTGCGTGGTAATCAACTAG 59.362 40.000 0.00 0.00 0.00 2.57
2095 7106 5.302360 TCTTTTGCGTGGTAATCAACTAGT 58.698 37.500 0.00 0.00 0.00 2.57
2096 7107 5.761234 TCTTTTGCGTGGTAATCAACTAGTT 59.239 36.000 1.12 1.12 0.00 2.24
2097 7108 6.930164 TCTTTTGCGTGGTAATCAACTAGTTA 59.070 34.615 8.04 0.00 0.00 2.24
2098 7109 7.441760 TCTTTTGCGTGGTAATCAACTAGTTAA 59.558 33.333 8.04 0.00 0.00 2.01
2099 7110 6.470557 TTGCGTGGTAATCAACTAGTTAAC 57.529 37.500 8.04 0.00 0.00 2.01
2100 7111 5.786311 TGCGTGGTAATCAACTAGTTAACT 58.214 37.500 13.68 13.68 0.00 2.24
2101 7112 5.865552 TGCGTGGTAATCAACTAGTTAACTC 59.134 40.000 12.39 0.00 0.00 3.01
2102 7113 6.098017 GCGTGGTAATCAACTAGTTAACTCT 58.902 40.000 12.39 0.00 0.00 3.24
2103 7114 6.034683 GCGTGGTAATCAACTAGTTAACTCTG 59.965 42.308 12.39 9.05 0.00 3.35
2104 7115 6.530534 CGTGGTAATCAACTAGTTAACTCTGG 59.469 42.308 12.39 6.51 0.00 3.86
2105 7116 7.384477 GTGGTAATCAACTAGTTAACTCTGGT 58.616 38.462 12.39 7.15 0.00 4.00
2106 7117 7.544915 GTGGTAATCAACTAGTTAACTCTGGTC 59.455 40.741 12.39 0.00 0.00 4.02
2107 7118 7.453752 TGGTAATCAACTAGTTAACTCTGGTCT 59.546 37.037 12.39 0.00 0.00 3.85
2108 7119 8.312564 GGTAATCAACTAGTTAACTCTGGTCTT 58.687 37.037 12.39 3.81 0.00 3.01
2109 7120 9.356433 GTAATCAACTAGTTAACTCTGGTCTTC 57.644 37.037 12.39 0.00 0.00 2.87
2118 7136 3.579534 ACTCTGGTCTTCGGCTAGATA 57.420 47.619 0.00 0.00 0.00 1.98
2119 7137 3.899726 ACTCTGGTCTTCGGCTAGATAA 58.100 45.455 0.00 0.00 0.00 1.75
2220 7406 6.073602 GCAAAACTCTTGATTTGGTCAATTCC 60.074 38.462 0.00 0.00 45.36 3.01
2228 7414 4.215399 TGATTTGGTCAATTCCTGTCGTTC 59.785 41.667 3.97 0.00 32.78 3.95
2235 7421 5.063564 GGTCAATTCCTGTCGTTCATTCTAC 59.936 44.000 0.00 0.00 0.00 2.59
2236 7422 5.869888 GTCAATTCCTGTCGTTCATTCTACT 59.130 40.000 0.00 0.00 0.00 2.57
2238 7424 7.707035 GTCAATTCCTGTCGTTCATTCTACTAT 59.293 37.037 0.00 0.00 0.00 2.12
2261 7452 2.758648 AAAAAGGGTGGTGATGGGC 58.241 52.632 0.00 0.00 0.00 5.36
2439 7630 5.432885 AAAAGTTCGGTTTCACCATAGTG 57.567 39.130 0.00 0.00 46.00 2.74
2465 7658 9.971744 GGTGTGCAATTATTATTTTTGTGAATC 57.028 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.379791 ACTACAAAGCATCCTAAACATAGTAAC 57.620 33.333 0.00 0.00 0.00 2.50
3 4 8.759782 AGTACTACAAAGCATCCTAAACATAGT 58.240 33.333 0.00 0.00 0.00 2.12
4 5 9.601217 AAGTACTACAAAGCATCCTAAACATAG 57.399 33.333 0.00 0.00 0.00 2.23
71 72 7.373493 CCAATGTTAAAGCTGAATTCACTTCT 58.627 34.615 17.77 8.36 34.75 2.85
72 73 6.587608 CCCAATGTTAAAGCTGAATTCACTTC 59.412 38.462 17.77 10.19 0.00 3.01
126 134 3.244457 ACCCTAGTTGTGCTCTTGTAACC 60.244 47.826 0.00 0.00 0.00 2.85
145 153 2.479566 TCTTGTCAGATTCTGCACCC 57.520 50.000 8.89 0.00 0.00 4.61
644 2196 0.252103 ACGAGGAGGAAGGCAAGGTA 60.252 55.000 0.00 0.00 0.00 3.08
718 2277 3.682315 CTTATGACTCGCGCGCCG 61.682 66.667 27.95 20.78 38.61 6.46
719 2278 2.577785 GACTTATGACTCGCGCGCC 61.578 63.158 27.95 16.96 0.00 6.53
720 2279 1.410737 TTGACTTATGACTCGCGCGC 61.411 55.000 27.95 23.91 0.00 6.86
721 2280 1.071894 CATTGACTTATGACTCGCGCG 60.072 52.381 26.76 26.76 0.00 6.86
722 2281 1.332377 GCATTGACTTATGACTCGCGC 60.332 52.381 0.00 0.00 0.00 6.86
723 2282 1.926510 TGCATTGACTTATGACTCGCG 59.073 47.619 0.00 0.00 0.00 5.87
724 2283 3.847467 GCATGCATTGACTTATGACTCGC 60.847 47.826 14.21 0.00 0.00 5.03
1104 2691 1.445582 GTACACCGAGAAGCACCCG 60.446 63.158 0.00 0.00 0.00 5.28
1558 3455 5.593909 AGTATATGCAAATTAAGCACCTGCA 59.406 36.000 7.56 4.57 45.95 4.41
1559 3456 6.076981 AGTATATGCAAATTAAGCACCTGC 57.923 37.500 7.56 0.00 45.95 4.85
1560 3457 8.190122 TCAAAGTATATGCAAATTAAGCACCTG 58.810 33.333 7.56 0.00 45.95 4.00
1584 3481 1.331399 TGTGTGGGGTTGAGACGTCA 61.331 55.000 19.50 0.00 0.00 4.35
1637 3559 7.117379 TGCATGCATAGAATAGATCTTCTTTCG 59.883 37.037 18.46 0.00 39.71 3.46
1708 3631 6.178607 AGCTCAACCTCCAAATTTCATTTT 57.821 33.333 0.00 0.00 0.00 1.82
1724 3647 7.907214 TCTGTTTCTAATTTAGGAGCTCAAC 57.093 36.000 17.19 7.61 0.00 3.18
1747 3670 4.499019 CCCCACACACACACTTACATTTTC 60.499 45.833 0.00 0.00 0.00 2.29
1770 6744 6.490381 AGTTAATCTCTTTCTTTTGTGTCCCC 59.510 38.462 0.00 0.00 0.00 4.81
1779 6753 8.712228 ATCACCCAAAGTTAATCTCTTTCTTT 57.288 30.769 0.00 0.00 33.58 2.52
1817 6791 6.227298 AGAGACATGTTCCACTTGTATAGG 57.773 41.667 0.00 0.00 36.73 2.57
1880 6858 7.230849 TGCAAACTAAAATTGTCATCCTCAT 57.769 32.000 0.00 0.00 0.00 2.90
1921 6899 4.351111 ACTCTACCCAGTTCTGTTTTCCAT 59.649 41.667 0.00 0.00 0.00 3.41
1922 6900 3.714798 ACTCTACCCAGTTCTGTTTTCCA 59.285 43.478 0.00 0.00 0.00 3.53
1924 6902 4.023963 GCAACTCTACCCAGTTCTGTTTTC 60.024 45.833 0.00 0.00 34.17 2.29
1937 6915 1.912371 GCAAGCGTGGCAACTCTACC 61.912 60.000 0.79 0.00 37.61 3.18
1938 6916 0.951040 AGCAAGCGTGGCAACTCTAC 60.951 55.000 0.79 0.00 37.61 2.59
1939 6917 0.606096 TAGCAAGCGTGGCAACTCTA 59.394 50.000 0.79 0.00 37.61 2.43
1940 6918 0.250295 TTAGCAAGCGTGGCAACTCT 60.250 50.000 0.79 0.00 37.61 3.24
1950 6929 2.799412 TGGCAAATTTTGTTAGCAAGCG 59.201 40.909 10.65 0.00 35.82 4.68
1974 6953 1.614996 TGACAATTGTGTTGGCCGAT 58.385 45.000 17.58 0.00 38.41 4.18
2001 6981 1.505807 CGGATGGCAATTGCGAACA 59.494 52.632 23.48 16.29 43.26 3.18
2025 7005 0.373716 GCTTAACCAGCGAATGTCCG 59.626 55.000 0.00 0.00 39.29 4.79
2070 7081 4.385825 AGTTGATTACCACGCAAAAGAGA 58.614 39.130 0.00 0.00 0.00 3.10
2071 7082 4.749245 AGTTGATTACCACGCAAAAGAG 57.251 40.909 0.00 0.00 0.00 2.85
2072 7083 5.302360 ACTAGTTGATTACCACGCAAAAGA 58.698 37.500 0.00 0.00 0.00 2.52
2073 7084 5.607119 ACTAGTTGATTACCACGCAAAAG 57.393 39.130 0.00 0.00 0.00 2.27
2074 7085 7.227116 AGTTAACTAGTTGATTACCACGCAAAA 59.773 33.333 18.56 0.00 0.00 2.44
2075 7086 6.707161 AGTTAACTAGTTGATTACCACGCAAA 59.293 34.615 18.56 0.00 0.00 3.68
2076 7087 6.225318 AGTTAACTAGTTGATTACCACGCAA 58.775 36.000 18.56 0.00 0.00 4.85
2077 7088 5.786311 AGTTAACTAGTTGATTACCACGCA 58.214 37.500 18.56 0.00 0.00 5.24
2078 7089 6.034683 CAGAGTTAACTAGTTGATTACCACGC 59.965 42.308 18.56 5.36 0.00 5.34
2079 7090 6.530534 CCAGAGTTAACTAGTTGATTACCACG 59.469 42.308 18.56 0.00 0.00 4.94
2080 7091 7.384477 ACCAGAGTTAACTAGTTGATTACCAC 58.616 38.462 18.56 8.00 0.00 4.16
2081 7092 7.453752 AGACCAGAGTTAACTAGTTGATTACCA 59.546 37.037 18.56 0.00 0.00 3.25
2082 7093 7.838884 AGACCAGAGTTAACTAGTTGATTACC 58.161 38.462 18.56 0.00 0.00 2.85
2083 7094 9.356433 GAAGACCAGAGTTAACTAGTTGATTAC 57.644 37.037 18.56 10.36 0.00 1.89
2084 7095 8.242053 CGAAGACCAGAGTTAACTAGTTGATTA 58.758 37.037 18.56 0.00 0.00 1.75
2085 7096 7.091443 CGAAGACCAGAGTTAACTAGTTGATT 58.909 38.462 18.56 6.75 0.00 2.57
2086 7097 6.350277 CCGAAGACCAGAGTTAACTAGTTGAT 60.350 42.308 18.56 3.63 0.00 2.57
2087 7098 5.048224 CCGAAGACCAGAGTTAACTAGTTGA 60.048 44.000 18.56 7.24 0.00 3.18
2088 7099 5.162075 CCGAAGACCAGAGTTAACTAGTTG 58.838 45.833 18.56 7.59 0.00 3.16
2089 7100 4.321824 GCCGAAGACCAGAGTTAACTAGTT 60.322 45.833 13.68 13.68 0.00 2.24
2090 7101 3.193056 GCCGAAGACCAGAGTTAACTAGT 59.807 47.826 8.42 6.61 0.00 2.57
2091 7102 3.444388 AGCCGAAGACCAGAGTTAACTAG 59.556 47.826 8.42 4.34 0.00 2.57
2092 7103 3.428532 AGCCGAAGACCAGAGTTAACTA 58.571 45.455 8.42 0.00 0.00 2.24
2093 7104 2.249139 AGCCGAAGACCAGAGTTAACT 58.751 47.619 8.13 8.13 0.00 2.24
2094 7105 2.745515 AGCCGAAGACCAGAGTTAAC 57.254 50.000 0.00 0.00 0.00 2.01
2095 7106 3.693807 TCTAGCCGAAGACCAGAGTTAA 58.306 45.455 0.00 0.00 0.00 2.01
2096 7107 3.361281 TCTAGCCGAAGACCAGAGTTA 57.639 47.619 0.00 0.00 0.00 2.24
2097 7108 2.217510 TCTAGCCGAAGACCAGAGTT 57.782 50.000 0.00 0.00 0.00 3.01
2098 7109 2.445682 ATCTAGCCGAAGACCAGAGT 57.554 50.000 0.00 0.00 0.00 3.24
2099 7110 4.920640 TTTATCTAGCCGAAGACCAGAG 57.079 45.455 0.00 0.00 0.00 3.35
2100 7111 5.416947 GTTTTTATCTAGCCGAAGACCAGA 58.583 41.667 0.00 0.00 0.00 3.86
2101 7112 4.571176 GGTTTTTATCTAGCCGAAGACCAG 59.429 45.833 6.62 0.00 0.00 4.00
2102 7113 4.224370 AGGTTTTTATCTAGCCGAAGACCA 59.776 41.667 11.38 0.00 0.00 4.02
2103 7114 4.767478 AGGTTTTTATCTAGCCGAAGACC 58.233 43.478 0.00 0.00 0.00 3.85
2104 7115 8.358895 AGTATAGGTTTTTATCTAGCCGAAGAC 58.641 37.037 0.00 0.00 0.00 3.01
2105 7116 8.474710 AGTATAGGTTTTTATCTAGCCGAAGA 57.525 34.615 0.00 0.00 0.00 2.87
2106 7117 7.813627 GGAGTATAGGTTTTTATCTAGCCGAAG 59.186 40.741 0.00 0.00 0.00 3.79
2107 7118 7.256083 GGGAGTATAGGTTTTTATCTAGCCGAA 60.256 40.741 0.00 0.00 0.00 4.30
2108 7119 6.210185 GGGAGTATAGGTTTTTATCTAGCCGA 59.790 42.308 0.00 0.00 0.00 5.54
2109 7120 6.210984 AGGGAGTATAGGTTTTTATCTAGCCG 59.789 42.308 0.00 0.00 0.00 5.52
2188 7206 9.807649 GACCAAATCAAGAGTTTTGCATAATAT 57.192 29.630 0.00 0.00 34.56 1.28
2189 7207 8.801299 TGACCAAATCAAGAGTTTTGCATAATA 58.199 29.630 0.00 0.00 34.56 0.98
2190 7208 7.669427 TGACCAAATCAAGAGTTTTGCATAAT 58.331 30.769 0.00 0.00 34.56 1.28
2191 7209 7.048629 TGACCAAATCAAGAGTTTTGCATAA 57.951 32.000 0.00 0.00 34.56 1.90
2252 7443 1.838112 TTCTGTCAATGCCCATCACC 58.162 50.000 0.00 0.00 0.00 4.02
2256 7447 3.021695 CTGTCATTCTGTCAATGCCCAT 58.978 45.455 0.00 0.00 0.00 4.00
2261 7452 4.276678 ACAACACCTGTCATTCTGTCAATG 59.723 41.667 0.00 0.00 29.87 2.82
2397 7588 0.819259 TGAAGGTGTGCCACTTCTGC 60.819 55.000 0.00 0.00 37.19 4.26
2399 7590 2.435372 TTTGAAGGTGTGCCACTTCT 57.565 45.000 0.00 0.00 37.19 2.85
2439 7630 9.971744 GATTCACAAAAATAATAATTGCACACC 57.028 29.630 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.